AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032598.t1 MTR_6g005310 98.174 219 4 0 1 219 1 219 3.37e-157 434
MS.gene032598.t1 MTR_6g005340 97.727 220 5 0 1 220 1 220 4.07e-157 434
MS.gene032598.t1 MTR_6g005360 96.818 220 7 0 1 220 1 220 1.14e-155 430
MS.gene032598.t1 MTR_6g005330 95.455 220 10 0 1 220 1 220 3.43e-153 424
MS.gene032598.t1 MTR_1g079490 82.949 217 34 3 7 220 6 222 2.22e-126 356
MS.gene032598.t1 MTR_5g046410 78.899 218 44 2 5 220 4 221 3.81e-121 343
MS.gene032598.t1 MTR_5g046430 78.899 218 44 2 5 220 4 221 3.81e-121 343
MS.gene032598.t1 MTR_4g017030 78.899 218 44 2 5 220 4 221 3.81e-121 343
MS.gene032598.t1 MTR_4g017050 78.899 218 44 2 5 220 4 221 3.90e-121 343
MS.gene032598.t1 MTR_4g017040 77.376 221 49 1 1 220 1 221 4.16e-121 343
MS.gene032598.t1 MTR_2g019250 78.440 218 45 2 5 220 4 221 5.84e-121 342
MS.gene032598.t1 MTR_6g005350 74.545 220 55 1 1 220 1 219 4.00e-113 322
MS.gene032598.t1 MTR_6g005380 71.635 208 58 1 1 207 1 208 2.42e-103 297
MS.gene032598.t1 MTR_1g023770 63.819 199 62 2 19 215 19 209 3.49e-85 251
MS.gene032598.t1 MTR_2g030855 63.317 199 66 2 19 215 19 212 2.82e-84 249
MS.gene032598.t1 MTR_2g031270 63.000 200 66 3 19 215 19 213 1.09e-81 243
MS.gene032598.t1 MTR_2g030895 66.279 172 55 2 47 215 7 178 9.82e-77 229
MS.gene032598.t1 MTR_2g030865 66.279 172 55 2 47 215 7 178 2.91e-75 225
MS.gene032598.t1 MTR_2g031300 60.625 160 41 2 47 204 7 146 9.62e-60 185
MS.gene032598.t1 MTR_1g085500 46.190 210 103 4 11 214 8 213 1.97e-58 184
MS.gene032598.t1 MTR_7g111240 50.510 196 91 3 22 215 20 211 8.04e-56 177
MS.gene032598.t1 MTR_1g085140 47.500 200 99 3 18 215 20 215 7.87e-55 174
MS.gene032598.t1 MTR_5g036570 48.731 197 94 4 22 215 27 219 1.06e-53 172
MS.gene032598.t1 MTR_7g111240 50.000 196 89 3 22 215 20 208 2.48e-53 171
MS.gene032598.t1 MTR_1g112200 43.056 216 108 6 2 215 5 207 1.87e-47 155
MS.gene032598.t1 MTR_2g041550 42.056 214 109 5 1 212 3 203 4.94e-43 144
MS.gene032598.t1 MTR_1g060120 39.048 210 118 4 12 215 16 221 7.38e-43 144
MS.gene032598.t1 MTR_8g020750 44.103 195 90 5 1 189 3 184 3.58e-42 142
MS.gene032598.t1 MTR_2g041570 39.070 215 116 5 1 213 3 204 5.78e-39 134
MS.gene032598.t1 MTR_2g041580 39.252 214 115 5 1 212 3 203 7.10e-39 133
MS.gene032598.t1 MTR_8g020590 40.000 190 106 4 26 213 19 202 1.59e-35 125
MS.gene032598.t1 MTR_8g020630 37.736 212 119 5 5 215 6 205 4.74e-35 124
MS.gene032598.t1 MTR_3g019710 38.679 212 117 5 5 215 6 205 7.28e-35 123
MS.gene032598.t1 MTR_8g007300 41.071 168 96 2 22 188 26 191 1.06e-34 123
MS.gene032598.t1 MTR_8g020650 40.212 189 105 4 28 215 24 205 6.64e-34 120
MS.gene032598.t1 MTR_3g019680 38.208 212 117 5 5 215 6 204 9.03e-34 120
MS.gene032598.t1 MTR_3g019650 37.736 212 118 5 5 215 6 204 2.15e-33 119
MS.gene032598.t1 MTR_2g045100 38.208 212 118 5 5 215 6 205 5.04e-33 118
MS.gene032598.t1 MTR_2g036120 37.688 199 116 4 18 215 14 205 5.10e-32 115
MS.gene032598.t1 MTR_8g020670 36.449 214 123 6 3 215 4 205 3.57e-31 114
MS.gene032598.t1 MTR_8g020770 37.788 217 114 6 5 215 7 208 7.01e-31 113
MS.gene032598.t1 MTR_4g010340 39.655 174 98 4 43 215 34 201 7.68e-31 112
MS.gene032598.t1 MTR_2g044040 36.683 199 118 4 18 215 14 205 1.74e-30 112
MS.gene032598.t1 MTR_8g020610 40.000 190 104 6 28 215 22 203 1.96e-30 112
MS.gene032598.t1 MTR_8g020760 34.906 212 130 4 5 215 3 207 7.17e-29 107
MS.gene032598.t1 MTR_0284s0010 35.377 212 124 5 5 215 6 205 8.09e-29 107
MS.gene032598.t1 MTR_5g031460 34.673 199 122 4 18 215 14 205 3.96e-28 105
MS.gene032598.t1 MTR_2g019780 35.023 217 130 6 1 215 1 208 4.68e-28 105
MS.gene032598.t1 MTR_3g096330 33.488 215 136 4 1 211 553 764 8.22e-28 110
MS.gene032598.t1 MTR_7g011340 36.649 191 113 4 26 215 22 205 1.20e-27 104
MS.gene032598.t1 MTR_8g020763 36.000 175 105 3 43 215 17 186 4.31e-27 102
MS.gene032598.t1 MTR_4g052770 39.860 143 81 3 74 215 67 205 1.43e-26 102
MS.gene032598.t1 MTR_2g086620 34.842 221 113 8 2 215 8 204 1.90e-26 101
MS.gene032598.t1 MTR_4g052780 39.860 143 81 3 74 215 67 205 1.99e-26 101
MS.gene032598.t1 MTR_2g086630 35.023 217 110 8 6 215 12 204 2.76e-26 101
MS.gene032598.t1 MTR_3g073170 36.508 189 110 5 28 215 27 206 1.03e-25 99.8
MS.gene032598.t1 MTR_2g086640 34.419 215 122 7 2 215 7 203 1.88e-25 99.0
MS.gene032598.t1 MTR_2g030915 54.667 75 20 1 93 167 1 61 3.13e-20 82.4
MS.gene032598.t1 MTR_3g019810 30.986 213 129 8 2 212 106 302 3.30e-17 79.0
MS.gene032598.t1 MTR_4g027415 39.683 126 70 3 26 150 22 142 8.42e-17 74.3
MS.gene032598.t1 MTR_2g072560 40.385 104 59 2 18 120 14 115 2.65e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032598.t1 AT5G39120 64.840 219 73 3 1 215 1 219 5.64e-94 274
MS.gene032598.t1 AT5G39150 64.384 219 74 3 1 215 1 219 3.75e-93 272
MS.gene032598.t1 AT5G39180 64.384 219 74 3 1 215 1 219 5.68e-93 271
MS.gene032598.t1 AT5G39110 64.651 215 73 2 4 215 6 220 2.25e-92 270
MS.gene032598.t1 AT5G38940 67.347 196 62 1 22 215 26 221 9.09e-91 266
MS.gene032598.t1 AT5G38940 67.347 196 62 1 22 215 50 245 1.46e-90 266
MS.gene032598.t1 AT5G38930 67.677 198 62 1 20 215 24 221 6.95e-90 264
MS.gene032598.t1 AT5G39160 66.834 199 62 3 20 215 22 219 4.36e-89 262
MS.gene032598.t1 AT3G05950 66.986 209 64 4 11 215 14 221 5.45e-89 262
MS.gene032598.t1 AT5G39130 66.332 199 63 3 20 215 22 219 5.67e-89 261
MS.gene032598.t1 AT5G39190 66.834 199 62 3 20 215 22 219 8.22e-89 261
MS.gene032598.t1 AT5G38910 63.470 219 76 4 1 215 1 219 1.59e-87 258
MS.gene032598.t1 AT5G38960 64.677 201 68 2 18 215 22 222 1.80e-87 258
MS.gene032598.t1 AT4G14630 64.824 199 67 2 20 215 24 222 9.92e-86 253
MS.gene032598.t1 AT5G39160 64.322 199 63 3 20 215 22 215 2.46e-84 249
MS.gene032598.t1 AT3G04200 62.500 216 74 4 3 215 11 222 4.18e-83 247
MS.gene032598.t1 AT3G04150 58.108 222 85 5 1 215 1 221 1.37e-76 230
MS.gene032598.t1 AT5G39190 59.898 197 57 2 20 215 22 197 7.18e-75 225
MS.gene032598.t1 AT5G39160 59.391 197 58 2 20 215 22 197 2.09e-74 224
MS.gene032598.t1 AT3G04190 58.824 204 80 3 15 215 19 221 2.15e-74 224
MS.gene032598.t1 AT3G04150 54.701 234 87 5 1 215 1 234 2.51e-74 225
MS.gene032598.t1 AT3G04170 57.416 209 81 5 11 215 14 218 4.41e-72 219
MS.gene032598.t1 AT3G04180 56.373 204 85 3 15 215 19 221 7.96e-71 215
MS.gene032598.t1 AT5G38910 51.598 219 65 5 1 215 1 182 7.28e-61 189
MS.gene032598.t1 AT1G02335 44.444 216 113 4 2 215 5 215 1.10e-56 179
MS.gene032598.t1 AT1G09560 49.239 197 94 3 22 216 24 216 1.36e-56 179
MS.gene032598.t1 AT3G62020 46.698 212 106 4 7 215 8 215 1.42e-55 176
MS.gene032598.t1 AT1G18970 46.479 213 106 4 7 217 14 220 1.59e-55 176
MS.gene032598.t1 AT3G05930 45.455 220 110 5 1 215 1 215 2.39e-55 176
MS.gene032598.t1 AT1G18980 48.990 198 93 4 22 217 29 220 2.02e-53 171
MS.gene032598.t1 AT5G26700 45.933 209 94 6 11 215 16 209 1.49e-52 169
MS.gene032598.t1 AT1G10460 42.714 199 107 5 22 215 19 215 2.39e-48 158
MS.gene032598.t1 AT3G62020 47.778 180 89 3 39 215 9 186 3.06e-48 157
MS.gene032598.t1 AT3G10080 40.796 201 111 4 19 215 23 219 1.29e-43 146
MS.gene032598.t1 AT3G10080 40.594 202 112 4 18 215 93 290 7.27e-43 146
MS.gene032598.t1 AT5G20630 41.361 191 100 4 1 189 3 183 1.24e-39 135
MS.gene032598.t1 AT5G61750 42.703 185 96 4 5 187 7 183 4.34e-39 134
MS.gene032598.t1 AT1G74820 38.073 218 119 5 8 215 14 225 5.99e-36 126
MS.gene032598.t1 AT1G72610 38.624 189 108 4 26 212 19 201 4.88e-33 118
MS.gene032598.t1 AT5G38950 65.625 64 22 0 144 207 2 65 5.12e-21 84.3
MS.gene032598.t1 AT5G39100 66.038 53 18 0 4 56 6 58 1.15e-17 74.3

Find 50 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.046653 6.3:+1437389 MS.gene032598:CDS
CTTGTTTGTGACAGCCTTCT+TGG 0.121595 6.3:+1436683 MS.gene032598:CDS
TAGTAATAACACCTGGATTT+TGG 0.212711 6.3:-1437370 None:intergenic
AGTATCTCATTAACAGTAAC+CGG 0.338632 6.3:-1437080 None:intergenic
AGTATACATACCACCATTCT+TGG 0.343654 6.3:-1436775 None:intergenic
GGAAATGCAGTTGCCATTGC+TGG 0.378013 6.3:+1437338 MS.gene032598:CDS
TTGGAGGGCACTCTTTATGT+TGG 0.393903 6.3:+1437206 MS.gene032598:CDS
TCGTTTGCTGTAGCAAGCTT+TGG 0.401677 6.3:-1436999 None:intergenic
CTCGTGTTGACTTTGCATCT+AGG 0.405287 6.3:+1437132 MS.gene032598:CDS
TTCCATACCCCACATTCAAT+TGG 0.409845 6.3:-1437319 None:intergenic
TGGAAGTGAATGAGACCAAT+TGG 0.411740 6.3:-1437299 None:intergenic
TGGAGGGCACTCTTTATGTT+GGG 0.413131 6.3:+1437207 MS.gene032598:CDS
CTATTGCTAATGCTGTATTT+GGG 0.423500 6.3:+1437390 MS.gene032598:CDS
TCGTGTTGACTTTGCATCTA+GGG 0.430505 6.3:+1437133 MS.gene032598:CDS
ATTGTCCACTTGAAAAGCTT+TGG 0.448442 6.3:-1437444 None:intergenic
ACAAAAGTCTTGTAGAGGGC+TGG 0.457530 6.3:-1436736 None:intergenic
CAAAAGTCTTGTAGAGGGCT+GGG 0.476086 6.3:-1436735 None:intergenic
TTCTTCTACTCAGTGAAAGA+AGG 0.477471 6.3:+1437023 MS.gene032598:CDS
ATAAGAATTTCAGTGGCTCT+AGG 0.484696 6.3:-1437179 None:intergenic
TGAAATTCTTATCGTGTTGG+AGG 0.496658 6.3:+1437190 MS.gene032598:CDS
TTCCAATTGAATGTGGGGTA+TGG 0.505417 6.3:+1437317 MS.gene032598:CDS
CATTCACTTCCAATTGAATG+TGG 0.512147 6.3:+1437310 MS.gene032598:CDS
TTGTAGAGGGCTGGGATCAA+AGG 0.523699 6.3:-1436727 None:intergenic
ATTCACTTCCAATTGAATGT+GGG 0.537723 6.3:+1437311 MS.gene032598:CDS
CACTGAAATTCTTATCGTGT+TGG 0.547757 6.3:+1437187 MS.gene032598:CDS
TAAGAATTTCAGTGGCTCTA+GGG 0.548407 6.3:-1437178 None:intergenic
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6.3:+1437359 MS.gene032598:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.550279 6.3:-1437167 None:intergenic
TTCACTTCCAATTGAATGTG+GGG 0.551943 6.3:+1437312 MS.gene032598:CDS
ATACTAGGACTAAATACTCT+AGG 0.556333 6.3:+1437098 MS.gene032598:CDS
TCAAGTGGACAATAACATAG+TGG 0.579525 6.3:+1437454 MS.gene032598:CDS
GTTACTGTTAATGAGATACT+AGG 0.582511 6.3:+1437083 MS.gene032598:CDS
TGTGAATGGCAAATTCTGCA+AGG 0.584711 6.3:+1436974 MS.gene032598:CDS
ACATGATGCTAAAGCCAAGA+AGG 0.585634 6.3:-1436697 None:intergenic
CGTGTTGACTTTGCATCTAG+GGG 0.592403 6.3:+1437134 MS.gene032598:CDS
GAAATTCTTATCGTGTTGGA+GGG 0.596752 6.3:+1437191 MS.gene032598:CDS
TTGGCTGCTAAGTCCAGCAA+TGG 0.600072 6.3:-1437351 None:intergenic
GCCACACAAAAGTCTTGTAG+AGG 0.603085 6.3:-1436741 None:intergenic
GTATCTCATTAACAGTAACC+GGG 0.609818 6.3:-1437079 None:intergenic
ATCAATGACACCAAGAATGG+TGG 0.627435 6.3:+1436765 MS.gene032598:CDS
GCTATCAATGACACCAAGAA+TGG 0.633041 6.3:+1436762 MS.gene032598:CDS
GGAAATACATCAAATCCACT+TGG 0.640192 6.3:+1437044 MS.gene032598:CDS
AGGGCTGGGATCAAAGGCAA+AGG 0.641928 6.3:-1436721 None:intergenic
ATCACAAAAGTACTGAACAA+AGG 0.644517 6.3:+1437260 MS.gene032598:CDS
ACTTGGTTCAAAAGTGACCC+CGG 0.652639 6.3:+1437061 MS.gene032598:CDS
CAACACGATAAGAATTTCAG+TGG 0.652942 6.3:-1437186 None:intergenic
CCACACAAAAGTCTTGTAGA+GGG 0.655758 6.3:-1436740 None:intergenic
GCTCTAGGGTGAGTATGTGG+AGG 0.673911 6.3:-1437164 None:intergenic
TTAGCAATAGTAATAACACC+TGG 0.687379 6.3:-1437377 None:intergenic
TATCTCATTAACAGTAACCG+GGG 0.698800 6.3:-1437078 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTATATATCAATGTTGT+TGG - chr6.3:1436903-1436922 None:intergenic 20.0%
! ACAATCTTCAAAAACAATTC+TGG + chr6.3:1437477-1437496 MS.gene032598:CDS 25.0%
! CAATCTTCAAAAACAATTCT+GGG + chr6.3:1437478-1437497 MS.gene032598:CDS 25.0%
! TCATAGTTCAATCAGTTTAA+CGG - chr6.3:1436850-1436869 None:intergenic 25.0%
! TTTATTCATCTTTACTCGTT+TGG + chr6.3:1436818-1436837 MS.gene032598:intron 25.0%
ACTATGATACAAAAGTCTCA+CGG + chr6.3:1436863-1436882 MS.gene032598:intron 30.0%
ACTATTGCTAATGCTGTATT+TGG + chr6.3:1437389-1437408 MS.gene032598:CDS 30.0%
AGTATCTCATTAACAGTAAC+CGG - chr6.3:1437083-1437102 None:intergenic 30.0%
ATACTAGGACTAAATACTCT+AGG + chr6.3:1437098-1437117 MS.gene032598:CDS 30.0%
ATTCACTTCCAATTGAATGT+GGG + chr6.3:1437311-1437330 MS.gene032598:CDS 30.0%
CATAGTTCAATCAGTTTAAC+GGG - chr6.3:1436849-1436868 None:intergenic 30.0%
CTATTGCTAATGCTGTATTT+GGG + chr6.3:1437390-1437409 MS.gene032598:CDS 30.0%
GTTACTGTTAATGAGATACT+AGG + chr6.3:1437083-1437102 MS.gene032598:CDS 30.0%
TTAGCAATAGTAATAACACC+TGG - chr6.3:1437380-1437399 None:intergenic 30.0%
! AGAACTTCTGATGAGATTTT+AGG - chr6.3:1437422-1437441 None:intergenic 30.0%
! TAGTAATAACACCTGGATTT+TGG - chr6.3:1437373-1437392 None:intergenic 30.0%
! TGTTTTGCAGTTTTTGTGAA+TGG + chr6.3:1436960-1436979 MS.gene032598:intron 30.0%
!! ATCACAAAAGTACTGAACAA+AGG + chr6.3:1437260-1437279 MS.gene032598:CDS 30.0%
!! GATGTTTTTGTGTTTCCAAT+TGG + chr6.3:1437284-1437303 MS.gene032598:CDS 30.0%
AGTATACATACCACCATTCT+TGG - chr6.3:1436778-1436797 None:intergenic 35.0%
ATAAGAATTTCAGTGGCTCT+AGG - chr6.3:1437182-1437201 None:intergenic 35.0%
ATTGTCCACTTGAAAAGCTT+TGG - chr6.3:1437447-1437466 None:intergenic 35.0%
CAACACGATAAGAATTTCAG+TGG - chr6.3:1437189-1437208 None:intergenic 35.0%
CACTGAAATTCTTATCGTGT+TGG + chr6.3:1437187-1437206 MS.gene032598:CDS 35.0%
CATTCACTTCCAATTGAATG+TGG + chr6.3:1437310-1437329 MS.gene032598:CDS 35.0%
CTATGATACAAAAGTCTCAC+GGG + chr6.3:1436864-1436883 MS.gene032598:intron 35.0%
GAAATTCTTATCGTGTTGGA+GGG + chr6.3:1437191-1437210 MS.gene032598:CDS 35.0%
GGAAATACATCAAATCCACT+TGG + chr6.3:1437044-1437063 MS.gene032598:CDS 35.0%
GTATCTCATTAACAGTAACC+GGG - chr6.3:1437082-1437101 None:intergenic 35.0%
TATCTCATTAACAGTAACCG+GGG - chr6.3:1437081-1437100 None:intergenic 35.0%
TCAAGTGGACAATAACATAG+TGG + chr6.3:1437454-1437473 MS.gene032598:CDS 35.0%
TCTTCAAAAACAATTCTGGG+TGG + chr6.3:1437481-1437500 MS.gene032598:CDS 35.0%
TGAAATTCTTATCGTGTTGG+AGG + chr6.3:1437190-1437209 MS.gene032598:CDS 35.0%
TTCACTTCCAATTGAATGTG+GGG + chr6.3:1437312-1437331 MS.gene032598:CDS 35.0%
TTCTTCTACTCAGTGAAAGA+AGG + chr6.3:1437023-1437042 MS.gene032598:CDS 35.0%
! TAAGAATTTCAGTGGCTCTA+GGG - chr6.3:1437181-1437200 None:intergenic 35.0%
! TCAGTACTTTTGTGATGAGA+CGG - chr6.3:1437256-1437275 None:intergenic 35.0%
ACATGATGCTAAAGCCAAGA+AGG - chr6.3:1436700-1436719 None:intergenic 40.0%
AGTTCAATCAGTTTAACGGG+TGG - chr6.3:1436846-1436865 None:intergenic 40.0%
ATCAATGACACCAAGAATGG+TGG + chr6.3:1436765-1436784 MS.gene032598:CDS 40.0%
GCTATCAATGACACCAAGAA+TGG + chr6.3:1436762-1436781 MS.gene032598:CDS 40.0%
TATCAATGTTGTTGGACGTG+AGG - chr6.3:1436895-1436914 None:intergenic 40.0%
TGGAAGTGAATGAGACCAAT+TGG - chr6.3:1437302-1437321 None:intergenic 40.0%
TGTGAATGGCAAATTCTGCA+AGG + chr6.3:1436974-1436993 MS.gene032598:CDS 40.0%
TTCCAATTGAATGTGGGGTA+TGG + chr6.3:1437317-1437336 MS.gene032598:CDS 40.0%
TTCCATACCCCACATTCAAT+TGG - chr6.3:1437322-1437341 None:intergenic 40.0%
! CCACACAAAAGTCTTGTAGA+GGG - chr6.3:1436743-1436762 None:intergenic 40.0%
! TTTGTGATGAGACGGTTTTC+TGG - chr6.3:1437248-1437267 None:intergenic 40.0%
!! TCGTGTTGACTTTGCATCTA+GGG + chr6.3:1437133-1437152 MS.gene032598:CDS 40.0%
!! TCTCACCAAAGCTTTTCAAG+TGG + chr6.3:1437439-1437458 MS.gene032598:CDS 40.0%
ACTTGGTTCAAAAGTGACCC+CGG + chr6.3:1437061-1437080 MS.gene032598:CDS 45.0%
CTTGTTTGTGACAGCCTTCT+TGG + chr6.3:1436683-1436702 MS.gene032598:CDS 45.0%
! ACAAAAGTCTTGTAGAGGGC+TGG - chr6.3:1436739-1436758 None:intergenic 45.0%
! CAAAAGTCTTGTAGAGGGCT+GGG - chr6.3:1436738-1436757 None:intergenic 45.0%
! CCCTCTACAAGACTTTTGTG+TGG + chr6.3:1436740-1436759 MS.gene032598:CDS 45.0%
! GCCACACAAAAGTCTTGTAG+AGG - chr6.3:1436744-1436763 None:intergenic 45.0%
!! CGTGTTGACTTTGCATCTAG+GGG + chr6.3:1437134-1437153 MS.gene032598:CDS 45.0%
!! CTCGTGTTGACTTTGCATCT+AGG + chr6.3:1437132-1437151 MS.gene032598:CDS 45.0%
!! TCGTTTGCTGTAGCAAGCTT+TGG - chr6.3:1437002-1437021 None:intergenic 45.0%
!! TGGAGGGCACTCTTTATGTT+GGG + chr6.3:1437207-1437226 MS.gene032598:CDS 45.0%
!! TTGGAGGGCACTCTTTATGT+TGG + chr6.3:1437206-1437225 MS.gene032598:CDS 45.0%
GGAAATGCAGTTGCCATTGC+TGG + chr6.3:1437338-1437357 MS.gene032598:CDS 50.0%
GGACTTAGCAGCCAAAATCC+AGG + chr6.3:1437359-1437378 MS.gene032598:CDS 50.0%
TTGGCTGCTAAGTCCAGCAA+TGG - chr6.3:1437354-1437373 None:intergenic 50.0%
TTGTAGAGGGCTGGGATCAA+AGG - chr6.3:1436730-1436749 None:intergenic 50.0%
!!! GGGGTCACTTTTGAACCAAG+TGG - chr6.3:1437062-1437081 None:intergenic 50.0%
AGGGCTGGGATCAAAGGCAA+AGG - chr6.3:1436724-1436743 None:intergenic 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG - chr6.3:1437167-1437186 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG - chr6.3:1437170-1437189 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 1436669 1437514 1436669 ID=MS.gene032598
chr6.3 mRNA 1436669 1437514 1436669 ID=MS.gene032598.t1;Parent=MS.gene032598
chr6.3 exon 1436669 1436786 1436669 ID=MS.gene032598.t1.exon1;Parent=MS.gene032598.t1
chr6.3 CDS 1436669 1436786 1436669 ID=cds.MS.gene032598.t1;Parent=MS.gene032598.t1
chr6.3 exon 1436970 1437514 1436970 ID=MS.gene032598.t1.exon2;Parent=MS.gene032598.t1
chr6.3 CDS 1436970 1437514 1436970 ID=cds.MS.gene032598.t1;Parent=MS.gene032598.t1
Gene Sequence

>MS.gene032598

ATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCATGTGCCTTTGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGGTATGTATACTTTTTCATGCTTATTTATTTATTTATTCATCTTTACTCGTTTGGTTCCACCCGTTAAACTGATTGAACTATGATACAAAAGTCTCACGGGTTCAACCTCACGTCCAACAACATTGATATATACATATATAAGCAGAGCATGTTATTTAATTACATGATGAATTTGTTTTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACAGCAAACGATTTCTTCTACTCAGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACCCCGGTTACTGTTAATGAGATACTAGGACTAAATACTCTAGGTATCTCTCTTGCTCGTGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAAATTCTTATCGTGTTGGAGGGCACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTGAACAAAGGAGATGTTTTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAATGTGGGGTATGGAAATGCAGTTGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATTACTATTGCTAATGCTGTATTTGGGTCTAATCCTAAAATCTCATCAGAAGTTCTCACCAAAGCTTTTCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG
Protein sequence

>MS.gene032598.t1

MKTSILFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN