AlfalfaGEDB | MS.gene032598

M. sativa cultivar XinJiangDaYe / MS.gene032598

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032598.t1	XP_003618162.1	98.2	219	4	0	1	219	1	219	1.10E-117	432.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032598.t1	Q9FIC9	64.8	219	73	3	1	215	1	219	6.1e-72	271.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032598.t1	G7KQ15	98.2	219	4	0	1	219	1	219	8.1e-118	432.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene032598	MS.gene037519	PPI
MS.gene032598	MS.gene70064	PPI
MS.gene032598	MS.gene005041	PPI
MS.gene032598	MS.gene82859	PPI
MS.gene032598	MS.gene82858	PPI
MS.gene032598	MS.gene037517	PPI
MS.gene032598	MS.gene70062	PPI
MS.gene032598	MS.gene50790	PPI
MS.gene032598	MS.gene96244	PPI
MS.gene032598	MS.gene032601	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032598.t1	MTR_6g005310	98.174	219	4	0	1	219	1	219	3.37e-157	434
MS.gene032598.t1	MTR_6g005340	97.727	220	5	0	1	220	1	220	4.07e-157	434
MS.gene032598.t1	MTR_6g005360	96.818	220	7	0	1	220	1	220	1.14e-155	430
MS.gene032598.t1	MTR_6g005330	95.455	220	10	0	1	220	1	220	3.43e-153	424
MS.gene032598.t1	MTR_1g079490	82.949	217	34	3	7	220	6	222	2.22e-126	356
MS.gene032598.t1	MTR_5g046410	78.899	218	44	2	5	220	4	221	3.81e-121	343
MS.gene032598.t1	MTR_5g046430	78.899	218	44	2	5	220	4	221	3.81e-121	343
MS.gene032598.t1	MTR_4g017030	78.899	218	44	2	5	220	4	221	3.81e-121	343
MS.gene032598.t1	MTR_4g017050	78.899	218	44	2	5	220	4	221	3.90e-121	343
MS.gene032598.t1	MTR_4g017040	77.376	221	49	1	1	220	1	221	4.16e-121	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene032598.t1	AT5G39120	64.840	219	73	3	1	215	1	219	5.64e-94	274
MS.gene032598.t1	AT5G39150	64.384	219	74	3	1	215	1	219	3.75e-93	272
MS.gene032598.t1	AT5G39180	64.384	219	74	3	1	215	1	219	5.68e-93	271
MS.gene032598.t1	AT5G39110	64.651	215	73	2	4	215	6	220	2.25e-92	270
MS.gene032598.t1	AT5G38940	67.347	196	62	1	22	215	26	221	9.09e-91	266
MS.gene032598.t1	AT5G38940	67.347	196	62	1	22	215	50	245	1.46e-90	266
MS.gene032598.t1	AT5G38930	67.677	198	62	1	20	215	24	221	6.95e-90	264
MS.gene032598.t1	AT5G39160	66.834	199	62	3	20	215	22	219	4.36e-89	262
MS.gene032598.t1	AT3G05950	66.986	209	64	4	11	215	14	221	5.45e-89	262
MS.gene032598.t1	AT5G39130	66.332	199	63	3	20	215	22	219	5.67e-89	261

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Find 50 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAAGTCTTGTAGAGGGC+TGG	0.457530	6.3:-1436736	None:intergenic
ACATGATGCTAAAGCCAAGA+AGG	0.585634	6.3:-1436697	None:intergenic
ACTATTGCTAATGCTGTATT+TGG	0.046653	6.3:+1437389	MS.gene032598:CDS
ACTTGGTTCAAAAGTGACCC+CGG	0.652639	6.3:+1437061	MS.gene032598:CDS
AGGGCTGGGATCAAAGGCAA+AGG	0.641928	6.3:-1436721	None:intergenic
AGTATACATACCACCATTCT+TGG	0.343654	6.3:-1436775	None:intergenic
AGTATCTCATTAACAGTAAC+CGG	0.338632	6.3:-1437080	None:intergenic
ATAAGAATTTCAGTGGCTCT+AGG	0.484696	6.3:-1437179	None:intergenic
ATACTAGGACTAAATACTCT+AGG	0.556333	6.3:+1437098	MS.gene032598:CDS
ATCAATGACACCAAGAATGG+TGG	0.627435	6.3:+1436765	MS.gene032598:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATGATACAAAAGTCTCA+CGG	+	chr6.3:1436863-1436882	MS.gene032598:intron	30.0%
ACTATTGCTAATGCTGTATT+TGG	+	chr6.3:1437389-1437408	MS.gene032598:CDS	30.0%
AGTATCTCATTAACAGTAAC+CGG	-	chr6.3:1437083-1437102	None:intergenic	30.0%
ATACTAGGACTAAATACTCT+AGG	+	chr6.3:1437098-1437117	MS.gene032598:CDS	30.0%
ATTCACTTCCAATTGAATGT+GGG	+	chr6.3:1437311-1437330	MS.gene032598:CDS	30.0%
CATAGTTCAATCAGTTTAAC+GGG	-	chr6.3:1436849-1436868	None:intergenic	30.0%
CTATTGCTAATGCTGTATTT+GGG	+	chr6.3:1437390-1437409	MS.gene032598:CDS	30.0%
GTTACTGTTAATGAGATACT+AGG	+	chr6.3:1437083-1437102	MS.gene032598:CDS	30.0%
TTAGCAATAGTAATAACACC+TGG	-	chr6.3:1437380-1437399	None:intergenic	30.0%
AGTATACATACCACCATTCT+TGG	-	chr6.3:1436778-1436797	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	1436669	1437514	1436669	ID=MS.gene032598
chr6.3	mRNA	1436669	1437514	1436669	ID=MS.gene032598.t1;Parent=MS.gene032598
chr6.3	exon	1436669	1436786	1436669	ID=MS.gene032598.t1.exon1;Parent=MS.gene032598.t1
chr6.3	CDS	1436669	1436786	1436669	ID=cds.MS.gene032598.t1;Parent=MS.gene032598.t1
chr6.3	exon	1436970	1437514	1436970	ID=MS.gene032598.t1.exon2;Parent=MS.gene032598.t1
chr6.3	CDS	1436970	1437514	1436970	ID=cds.MS.gene032598.t1;Parent=MS.gene032598.t1

Gene Sequence

>MS.gene032598

ATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCATGTGCCTTTGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATCAATGACACCAAGAATGGTGGTATGTATACTTTTTCATGCTTATTTATTTATTTATTCATCTTTACTCGTTTGGTTCCACCCGTTAAACTGATTGAACTATGATACAAAAGTCTCACGGGTTCAACCTCACGTCCAACAACATTGATATATACATATATAAGCAGAGCATGTTATTTAATTACATGATGAATTTGTTTTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACAGCAAACGATTTCTTCTACTCAGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACCCCGGTTACTGTTAATGAGATACTAGGACTAAATACTCTAGGTATCTCTCTTGCTCGTGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAAATTCTTATCGTGTTGGAGGGCACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTGAACAAAGGAGATGTTTTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAATGTGGGGTATGGAAATGCAGTTGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATTACTATTGCTAATGCTGTATTTGGGTCTAATCCTAAAATCTCATCAGAAGTTCTCACCAAAGCTTTTCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG

Protein sequence

>MS.gene032598.t1

MKTSILFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN