AlfalfaGEDB | MS.gene82855

M. sativa cultivar XinJiangDaYe / MS.gene82855

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82855.t1	XP_003618162.1	96.8	219	7	0	1	219	1	219	5.20E-115	423.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82855.t1	Q9FID0	64.7	215	73	2	4	215	6	220	1.8e-71	270.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82855.t1	G7KQ15	96.8	219	7	0	1	219	1	219	3.8e-115	423.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene82855	0.802278	6.05E-49	-1.69E-46
MS.gene049549	MS.gene82855	0.814827	1.26E-51	-1.69E-46
MS.gene049611	MS.gene82855	0.806607	7.58E-50	-1.69E-46
MS.gene049634	MS.gene82855	0.805559	1.26E-49	-1.69E-46
MS.gene050095	MS.gene82855	0.805972	1.03E-49	-1.69E-46
MS.gene050096	MS.gene82855	0.802966	4.37E-49	-1.69E-46
MS.gene050647	MS.gene82855	0.806627	7.50E-50	-1.69E-46
MS.gene05079	MS.gene82855	0.80756	4.76E-50	-1.69E-46
MS.gene050809	MS.gene82855	0.800738	1.25E-48	-1.69E-46
MS.gene051138	MS.gene82855	0.801237	9.90E-49	-1.69E-46
MS.gene051158	MS.gene82855	0.805766	1.14E-49	-1.69E-46
MS.gene05240	MS.gene82855	0.819887	9.17E-53	-1.69E-46
MS.gene052606	MS.gene82855	0.808909	2.46E-50	-1.69E-46
MS.gene052702	MS.gene82855	0.801121	1.05E-48	-1.69E-46
MS.gene052805	MS.gene82855	0.82182	3.29E-53	-1.69E-46
MS.gene053030	MS.gene82855	0.806495	8.00E-50	-1.69E-46
MS.gene053031	MS.gene82855	0.825781	3.89E-54	-1.69E-46
MS.gene053033	MS.gene82855	0.873165	1.82E-67	-1.69E-46
MS.gene053406	MS.gene82855	0.82496	6.08E-54	-1.69E-46
MS.gene054146	MS.gene82855	0.816366	5.74E-52	-1.69E-46
MS.gene054181	MS.gene82855	0.802318	5.94E-49	-1.69E-46
MS.gene054290	MS.gene82855	0.85363	2.10E-61	-1.69E-46
MS.gene054742	MS.gene82855	0.805587	1.24E-49	-1.69E-46
MS.gene055124	MS.gene82855	0.801933	7.13E-49	-1.69E-46
MS.gene055158	MS.gene82855	0.80188	7.31E-49	-1.69E-46
MS.gene055240	MS.gene82855	0.800232	1.59E-48	-1.69E-46
MS.gene057544	MS.gene82855	0.830397	3.00E-55	-1.69E-46
MS.gene057547	MS.gene82855	0.804081	2.56E-49	-1.69E-46
MS.gene058218	MS.gene82855	0.812765	3.60E-51	-1.69E-46
MS.gene058928	MS.gene82855	-0.800591	1.34E-48	-1.69E-46
MS.gene059402	MS.gene82855	0.830845	2.33E-55	-1.69E-46
MS.gene059955	MS.gene82855	0.81951	1.12E-52	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene50786	MS.gene82855	PPI
MS.gene053031	MS.gene82855	PPI
MS.gene032601	MS.gene82855	PPI
MS.gene037518	MS.gene82855	PPI
MS.gene053026	MS.gene82855	PPI
MS.gene82855	MS.gene50789	PPI
MS.gene032597	MS.gene82855	PPI
MS.gene96244	MS.gene82855	PPI
MS.gene82859	MS.gene82855	PPI
MS.gene89775	MS.gene82855	PPI
MS.gene70061	MS.gene82855	PPI
MS.gene82858	MS.gene82855	PPI
MS.gene82855	MS.gene70061	PPI
MS.gene82855	MS.gene82857	PPI
MS.gene004411	MS.gene82855	PPI
MS.gene70062	MS.gene82855	PPI
MS.gene002728	MS.gene82855	PPI
MS.gene07591	MS.gene82855	PPI
MS.gene037517	MS.gene82855	PPI
MS.gene82855	MS.gene037518	PPI
MS.gene82860	MS.gene82855	PPI
MS.gene50788	MS.gene82855	PPI
MS.gene005041	MS.gene82855	PPI
MS.gene82855	MS.gene047464	PPI
MS.gene037516	MS.gene82855	PPI
MS.gene82857	MS.gene82855	PPI
MS.gene50790	MS.gene82855	PPI
MS.gene037519	MS.gene82855	PPI
MS.gene032598	MS.gene82855	PPI
MS.gene89773	MS.gene82855	PPI
MS.gene032596	MS.gene82855	PPI
MS.gene50789	MS.gene82855	PPI
MS.gene70064	MS.gene82855	PPI
MS.gene74887	MS.gene82855	PPI
MS.gene89772	MS.gene82855	PPI
MS.gene032599	MS.gene82855	PPI
MS.gene047464	MS.gene82855	PPI
MS.gene89774	MS.gene82855	PPI
MS.gene82855	MS.gene053031	PPI
MS.gene82855	MS.gene82859	PPI
MS.gene053029	MS.gene82855	PPI
MS.gene053030	MS.gene82855	PPI
MS.gene70063	MS.gene82855	PPI
MS.gene82855	MS.gene07591	PPI
MS.gene053033	MS.gene82855	PPI
MS.gene037520	MS.gene82855	PPI
MS.gene053027	MS.gene82855	PPI
MS.gene82855	MS.gene037520	PPI
MS.gene50787	MS.gene82855	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82855.t1	MTR_6g005310	96.804	219	7	0	1	219	1	219	5.08e-154	426
MS.gene82855.t1	MTR_6g005340	96.364	220	8	0	1	220	1	220	8.06e-154	425
MS.gene82855.t1	MTR_6g005360	95.455	220	10	0	1	220	1	220	1.43e-152	422
MS.gene82855.t1	MTR_6g005330	94.091	220	13	0	1	220	1	220	5.00e-150	416
MS.gene82855.t1	MTR_1g079490	81.567	217	37	3	7	220	6	222	1.34e-124	352
MS.gene82855.t1	MTR_2g019250	77.982	218	46	2	5	220	4	221	1.82e-119	338
MS.gene82855.t1	MTR_4g017050	77.523	218	47	2	5	220	4	221	3.19e-119	338
MS.gene82855.t1	MTR_5g046410	77.523	218	47	2	5	220	4	221	3.37e-119	338
MS.gene82855.t1	MTR_5g046430	77.523	218	47	2	5	220	4	221	3.37e-119	338
MS.gene82855.t1	MTR_4g017030	77.523	218	47	2	5	220	4	221	3.37e-119	338
MS.gene82855.t1	MTR_4g017040	76.018	221	52	1	1	220	1	221	3.80e-119	338
MS.gene82855.t1	MTR_6g005350	74.545	220	55	1	1	220	1	219	1.12e-111	319
MS.gene82855.t1	MTR_6g005380	70.673	208	60	1	1	207	1	208	1.00e-100	291
MS.gene82855.t1	MTR_1g023770	62.312	199	65	2	19	215	19	209	6.35e-83	246
MS.gene82855.t1	MTR_2g030855	61.809	199	69	2	19	215	19	212	4.03e-82	244
MS.gene82855.t1	MTR_2g031270	61.500	200	69	3	19	215	19	213	1.64e-79	237
MS.gene82855.t1	MTR_2g030895	64.535	172	58	2	47	215	7	178	1.14e-74	223
MS.gene82855.t1	MTR_2g030865	64.535	172	58	2	47	215	7	178	3.57e-73	220
MS.gene82855.t1	MTR_1g085500	47.368	209	100	4	12	214	9	213	7.14e-60	187
MS.gene82855.t1	MTR_2g031300	59.375	160	43	2	47	204	7	146	2.77e-58	181
MS.gene82855.t1	MTR_7g111240	51.531	196	89	3	22	215	20	211	1.41e-57	181
MS.gene82855.t1	MTR_1g085140	48.500	200	97	3	18	215	20	215	4.37e-56	178
MS.gene82855.t1	MTR_7g111240	51.020	196	87	3	22	215	20	208	4.86e-55	175
MS.gene82855.t1	MTR_5g036570	47.716	197	96	4	22	215	27	219	3.58e-53	170
MS.gene82855.t1	MTR_1g112200	43.981	216	106	6	2	215	5	207	3.29e-50	162
MS.gene82855.t1	MTR_1g060120	38.249	217	124	4	5	215	9	221	7.25e-44	147
MS.gene82855.t1	MTR_2g041550	42.056	214	109	5	1	212	3	203	4.83e-43	144
MS.gene82855.t1	MTR_8g020750	44.103	195	90	5	1	189	3	184	1.12e-41	140
MS.gene82855.t1	MTR_2g041570	39.070	215	116	5	1	213	3	204	2.26e-39	135
MS.gene82855.t1	MTR_2g041580	39.252	214	115	5	1	212	3	203	2.34e-39	135
MS.gene82855.t1	MTR_8g007300	41.899	179	100	3	22	199	26	201	1.07e-35	125
MS.gene82855.t1	MTR_8g020590	39.474	190	107	4	26	213	19	202	5.66e-35	123
MS.gene82855.t1	MTR_8g020630	37.688	199	116	4	18	215	14	205	1.72e-34	122
MS.gene82855.t1	MTR_8g020650	39.683	189	106	4	28	215	24	205	5.91e-34	120
MS.gene82855.t1	MTR_3g019710	39.791	191	107	4	26	215	22	205	6.94e-34	120
MS.gene82855.t1	MTR_3g019680	37.264	212	119	5	5	215	6	204	5.08e-32	115
MS.gene82855.t1	MTR_2g045100	39.267	191	108	4	26	215	22	205	5.38e-32	115
MS.gene82855.t1	MTR_3g019650	38.220	191	110	4	26	215	21	204	6.42e-32	115
MS.gene82855.t1	MTR_2g036120	37.688	199	116	4	18	215	14	205	1.07e-31	115
MS.gene82855.t1	MTR_8g020670	35.981	214	124	6	3	215	4	205	3.69e-31	114
MS.gene82855.t1	MTR_8g020770	37.788	217	114	6	5	215	7	208	3.89e-31	114
MS.gene82855.t1	MTR_4g010340	39.080	174	99	4	43	215	34	201	7.51e-31	112
MS.gene82855.t1	MTR_8g020610	39.474	190	105	6	28	215	22	203	1.69e-30	112
MS.gene82855.t1	MTR_2g044040	36.683	199	118	4	18	215	14	205	3.33e-30	111
MS.gene82855.t1	MTR_3g096330	33.649	211	135	4	3	211	557	764	5.41e-29	114
MS.gene82855.t1	MTR_8g020763	36.000	175	105	3	43	215	17	186	1.87e-28	106
MS.gene82855.t1	MTR_8g020760	34.272	213	127	5	4	215	7	207	4.92e-28	105
MS.gene82855.t1	MTR_5g031460	34.171	199	123	4	18	215	14	205	6.88e-28	105
MS.gene82855.t1	MTR_0284s0010	35.176	199	121	4	18	215	14	205	1.30e-27	104
MS.gene82855.t1	MTR_7g011340	35.602	191	115	4	26	215	22	205	6.84e-27	102
MS.gene82855.t1	MTR_2g019780	34.722	216	130	6	1	215	3	208	1.10e-26	102
MS.gene82855.t1	MTR_4g052770	39.161	143	82	3	74	215	67	205	4.05e-26	100
MS.gene82855.t1	MTR_4g052780	39.161	143	82	3	74	215	67	205	6.39e-26	100
MS.gene82855.t1	MTR_2g086620	32.110	218	118	6	5	215	10	204	1.19e-25	99.4
MS.gene82855.t1	MTR_2g086630	32.110	218	118	6	5	215	10	204	1.66e-25	99.0
MS.gene82855.t1	MTR_3g073170	35.450	189	112	5	28	215	27	206	4.42e-25	98.2
MS.gene82855.t1	MTR_2g086640	40.000	135	76	3	82	215	73	203	6.77e-25	97.4
MS.gene82855.t1	MTR_2g030915	55.405	74	19	1	93	166	1	60	1.17e-19	80.9
MS.gene82855.t1	MTR_3g019810	31.455	213	128	8	2	212	106	302	1.40e-17	80.1
MS.gene82855.t1	MTR_4g027415	38.889	126	71	3	26	150	22	142	1.02e-16	74.3
MS.gene82855.t1	MTR_2g072560	41.346	104	58	2	18	120	14	115	1.29e-13	66.2
MS.gene82855.t1	MTR_3g019610	43.023	86	46	2	26	110	22	105	6.53e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82855.t1	AT5G39150	64.384	219	74	3	1	215	1	219	3.79e-93	272
MS.gene82855.t1	AT5G39110	64.651	215	73	2	4	215	6	220	6.55e-93	271
MS.gene82855.t1	AT5G39180	64.384	219	74	3	1	215	1	219	7.38e-93	271
MS.gene82855.t1	AT5G39120	64.384	219	74	3	1	215	1	219	9.49e-93	271
MS.gene82855.t1	AT5G38940	66.837	196	63	1	22	215	26	221	1.69e-89	263
MS.gene82855.t1	AT5G38940	66.837	196	63	1	22	215	50	245	3.01e-89	263
MS.gene82855.t1	AT3G05950	67.308	208	63	4	12	215	15	221	4.83e-89	262
MS.gene82855.t1	AT5G39130	63.134	217	75	4	2	215	5	219	8.13e-89	261
MS.gene82855.t1	AT5G39160	66.834	199	62	3	20	215	22	219	1.03e-88	261
MS.gene82855.t1	AT5G38930	67.172	198	63	1	20	215	24	221	1.41e-88	260
MS.gene82855.t1	AT5G39190	66.834	199	62	3	20	215	22	219	1.66e-88	260
MS.gene82855.t1	AT5G38910	63.551	214	71	3	4	215	11	219	1.90e-86	255
MS.gene82855.t1	AT5G38960	64.179	201	69	2	18	215	22	222	3.01e-86	254
MS.gene82855.t1	AT4G14630	61.860	215	74	3	4	215	13	222	1.10e-84	251
MS.gene82855.t1	AT5G39160	64.322	199	63	3	20	215	22	215	5.77e-84	249
MS.gene82855.t1	AT3G04200	62.037	216	75	4	3	215	11	222	4.37e-83	247
MS.gene82855.t1	AT3G04190	59.804	204	78	3	15	215	19	221	5.27e-75	226
MS.gene82855.t1	AT3G04150	57.207	222	87	5	1	215	1	221	1.06e-74	226
MS.gene82855.t1	AT5G39190	59.898	197	57	2	20	215	22	197	3.31e-74	223
MS.gene82855.t1	AT5G39160	59.391	197	58	2	20	215	22	197	7.51e-74	222
MS.gene82855.t1	AT3G04150	53.846	234	89	5	1	215	1	234	1.88e-72	220
MS.gene82855.t1	AT3G04180	56.863	204	84	3	15	215	19	221	9.49e-72	218
MS.gene82855.t1	AT3G04170	57.212	208	81	5	12	215	15	218	1.76e-70	215
MS.gene82855.t1	AT1G02335	45.833	216	110	4	2	215	5	215	4.58e-60	188
MS.gene82855.t1	AT5G38910	51.402	214	60	4	4	215	11	182	1.03e-59	186
MS.gene82855.t1	AT1G09560	50.254	197	92	3	22	216	24	216	2.07e-57	181
MS.gene82855.t1	AT3G62020	47.642	212	104	4	7	215	8	215	5.61e-57	180
MS.gene82855.t1	AT3G05930	46.364	220	108	5	1	215	1	215	1.63e-56	179
MS.gene82855.t1	AT1G18970	48.485	198	94	4	22	217	29	220	1.59e-55	176
MS.gene82855.t1	AT1G18980	48.485	198	94	4	22	217	29	220	6.13e-54	172
MS.gene82855.t1	AT5G26700	48.454	194	87	5	26	215	25	209	3.01e-53	170
MS.gene82855.t1	AT3G62020	48.889	180	87	3	39	215	9	186	1.04e-49	160
MS.gene82855.t1	AT1G10460	42.211	199	108	5	22	215	19	215	2.55e-48	158
MS.gene82855.t1	AT3G10080	40.670	209	111	5	11	215	20	219	4.48e-45	150
MS.gene82855.t1	AT3G10080	40.670	209	111	5	11	215	91	290	2.38e-44	150
MS.gene82855.t1	AT5G20630	40.838	191	101	4	1	189	3	183	1.57e-39	135
MS.gene82855.t1	AT5G61750	44.048	168	89	3	22	187	19	183	9.55e-38	130
MS.gene82855.t1	AT1G74820	37.736	212	120	5	6	215	24	225	1.94e-36	128
MS.gene82855.t1	AT1G72610	38.624	189	108	4	26	212	19	201	3.30e-34	121
MS.gene82855.t1	AT5G38950	64.062	64	23	0	144	207	2	65	2.35e-20	82.8
MS.gene82855.t1	AT5G39100	66.038	53	18	0	4	56	6	58	2.13e-18	76.3

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATTGCTAATGCTGTATT+TGG	0.057045	6.1:-1283821	MS.gene82855:CDS
TAGTGATTACACCTGGATTT+TGG	0.253401	6.1:+1283840	None:intergenic
TTCACTTTCAATTGAATGTT+GGG	0.325573	6.1:-1283898	MS.gene82855:CDS
AGTATACATACCACCATTCT+TGG	0.333982	6.1:+1284433	None:intergenic
CTTGTTTGTGACTGCCTGCT+TGG	0.350107	6.1:-1284525	MS.gene82855:CDS
TCATTTGCTGTAGCATGCTT+TGG	0.351870	6.1:+1284211	None:intergenic
ATACTAGGACTAAACACTTT+AGG	0.375557	6.1:-1284112	MS.gene82855:CDS
TTGGAGGGTACTCTTTATGT+TGG	0.391607	6.1:-1284004	MS.gene82855:CDS
GGAAATGCAGTTGTCATTGC+TGG	0.408325	6.1:-1283872	MS.gene82855:CDS
AGTATCTCATTAACTGTAAC+CGG	0.413639	6.1:+1284130	None:intergenic
CCACTATGTTATTGTCCACT+TGG	0.415021	6.1:+1283756	None:intergenic
TGAAAGTGAATGAGGCCAAT+TGG	0.419001	6.1:+1283911	None:intergenic
TGGAGGGTACTCTTTATGTT+GGG	0.430272	6.1:-1284003	MS.gene82855:CDS
ATTCACTTTCAATTGAATGT+TGG	0.434824	6.1:-1283899	MS.gene82855:CDS
TTTCAATTGAATGTTGGGTA+TGG	0.435827	6.1:-1283893	MS.gene82855:CDS
GATGTCTTCGTGTTTCCAAT+TGG	0.447280	6.1:-1283926	MS.gene82855:CDS
CTATTGCTAATGCTGTATTT+GGG	0.459960	6.1:-1283820	MS.gene82855:CDS
TTCTTCTACTCGGTGAAAGA+AGG	0.467010	6.1:-1284187	MS.gene82855:CDS
ATTGTCCACTTGGAAAGCTT+TGG	0.467417	6.1:+1283766	None:intergenic
ATAAGAATCTCAGTGGCTCT+AGG	0.470121	6.1:+1284031	None:intergenic
TGAGATTCTTATCGTGTTGG+AGG	0.479548	6.1:-1284020	MS.gene82855:CDS
TCGCATTGACTTCGCTGCTA+GGG	0.481033	6.1:-1284077	MS.gene82855:CDS
CTCGCATTGACTTCGCTGCT+AGG	0.500918	6.1:-1284078	MS.gene82855:CDS
CAAAAGTCTTGCAAAGGGCT+AGG	0.509807	6.1:+1284473	None:intergenic
ACAAGATGCTAAAGCCAAGC+AGG	0.517868	6.1:+1284511	None:intergenic
TTGCAAAGGGCTAGGATCAA+AGG	0.525409	6.1:+1284481	None:intergenic
CACTGAGATTCTTATCGTGT+TGG	0.542092	6.1:-1284023	MS.gene82855:CDS
GTGGCTCTAGGGTGAGTATG+TGG	0.548107	6.1:+1284043	None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG	0.548530	6.1:+1284032	None:intergenic
CGCATTGACTTCGCTGCTAG+GGG	0.548623	6.1:-1284076	MS.gene82855:CDS
GGACTTAGCAGCCAAAATCC+AGG	0.549743	6.1:-1283851	MS.gene82855:CDS
CATTCAATTGAAAGTGAATG+AGG	0.551568	6.1:+1283903	None:intergenic
AGCAAATGATTTCTTCTACT+CGG	0.553402	6.1:-1284197	MS.gene82855:CDS
GTTACAGTTAATGAGATACT+AGG	0.558743	6.1:-1284127	MS.gene82855:CDS
GCCACACAAAAGTCTTGCAA+AGG	0.561294	6.1:+1284467	None:intergenic
CCACACAAAAGTCTTGCAAA+GGG	0.572371	6.1:+1284468	None:intergenic
TGTGAATGGCAAATTCTGCA+AGG	0.584711	6.1:-1284236	MS.gene82855:CDS
GAGATTCTTATCGTGTTGGA+GGG	0.612927	6.1:-1284019	MS.gene82855:CDS
CCAAGTGGACAATAACATAG+TGG	0.613774	6.1:-1283756	MS.gene82855:CDS
TTAGCAATAGTGATTACACC+TGG	0.624375	6.1:+1283833	None:intergenic
ATCAATGATACCAAGAATGG+TGG	0.631783	6.1:-1284443	MS.gene82855:intron
AGGGCTAGGATCAAAGGCAA+AGG	0.638564	6.1:+1284487	None:intergenic
GCTATCAATGATACCAAGAA+TGG	0.640005	6.1:-1284446	MS.gene82855:CDS
GGAAATACATCAAATCCACT+TGG	0.640192	6.1:-1284166	MS.gene82855:CDS
ATCACAAAAGTACTCAACAA+AGG	0.644517	6.1:-1283950	MS.gene82855:CDS
TCTCACCAAAGCTTTCCAAG+TGG	0.665947	6.1:-1283771	MS.gene82855:CDS
ACTTGGTTCAAAAGTGACAC+CGG	0.669513	6.1:-1284149	MS.gene82855:CDS
GCTCTAGGGTGAGTATGTGG+AGG	0.673911	6.1:+1284046	None:intergenic
CAACACGATAAGAATCTCAG+TGG	0.757588	6.1:+1284024	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAATATATACGTATATAAG+TGG	-	chr6.1:1283955-1283974	MS.gene82855:CDS	15.0%
!!	TACGTATATATTAATGTTGT+CGG	+	chr6.1:1283949-1283968	None:intergenic	20.0%
!	ACAATCTTCAAAAACAATTC+TGG	-	chr6.1:1284524-1284543	MS.gene82855:CDS	25.0%
!	ATTCACTTTCAATTGAATGT+TGG	-	chr6.1:1284358-1284377	MS.gene82855:intron	25.0%
!	CAATCTTCAAAAACAATTCT+GGG	-	chr6.1:1284525-1284544	MS.gene82855:CDS	25.0%
!	TCATAGTTCAATCAGTTTAA+CGG	+	chr6.1:1283896-1283915	None:intergenic	25.0%
!	TTCACTTTCAATTGAATGTT+GGG	-	chr6.1:1284359-1284378	MS.gene82855:intron	25.0%
!!!	AGAACTTCTGAAGAAATTTT+TGG	+	chr6.1:1284469-1284488	None:intergenic	25.0%
	ACTATGATACAAAAGTCTCA+CGG	-	chr6.1:1283909-1283928	MS.gene82855:CDS	30.0%
	ACTATTGCTAATGCTGTATT+TGG	-	chr6.1:1284436-1284455	MS.gene82855:intron	30.0%
	AGCAAATGATTTCTTCTACT+CGG	-	chr6.1:1284060-1284079	MS.gene82855:CDS	30.0%
	AGTATCTCATTAACTGTAAC+CGG	+	chr6.1:1284130-1284149	None:intergenic	30.0%
	ATACTAGGACTAAACACTTT+AGG	-	chr6.1:1284145-1284164	MS.gene82855:CDS	30.0%
	CATAGTTCAATCAGTTTAAC+GGG	+	chr6.1:1283895-1283914	None:intergenic	30.0%
	CATTCAATTGAAAGTGAATG+AGG	+	chr6.1:1284357-1284376	None:intergenic	30.0%
	CTATTGCTAATGCTGTATTT+GGG	-	chr6.1:1284437-1284456	MS.gene82855:intron	30.0%
	GTTACAGTTAATGAGATACT+AGG	-	chr6.1:1284130-1284149	MS.gene82855:CDS	30.0%
	TTTCAATTGAATGTTGGGTA+TGG	-	chr6.1:1284364-1284383	MS.gene82855:intron	30.0%
!!	ATCACAAAAGTACTCAACAA+AGG	-	chr6.1:1284307-1284326	MS.gene82855:intron	30.0%
	AGTATACATACCACCATTCT+TGG	+	chr6.1:1283827-1283846	None:intergenic	35.0%
	ATCAATGATACCAAGAATGG+TGG	-	chr6.1:1283814-1283833	MS.gene82855:CDS	35.0%
	GCTATCAATGATACCAAGAA+TGG	-	chr6.1:1283811-1283830	MS.gene82855:CDS	35.0%
	GGAAATACATCAAATCCACT+TGG	-	chr6.1:1284091-1284110	MS.gene82855:CDS	35.0%
	TCTTCAAAAACAATTCTGGG+TGG	-	chr6.1:1284528-1284547	MS.gene82855:CDS	35.0%
	TTAGCAATAGTGATTACACC+TGG	+	chr6.1:1284427-1284446	None:intergenic	35.0%
!	TAGTGATTACACCTGGATTT+TGG	+	chr6.1:1284420-1284439	None:intergenic	35.0%
!	TGAGTACTTTTGTGATGAGA+CGG	+	chr6.1:1284303-1284322	None:intergenic	35.0%
!	TGTTGTGCAGTTTTTGTGAA+TGG	-	chr6.1:1284007-1284026	MS.gene82855:CDS	35.0%
	ACTTGGTTCAAAAGTGACAC+CGG	-	chr6.1:1284108-1284127	MS.gene82855:CDS	40.0%
	ATAAGAATCTCAGTGGCTCT+AGG	+	chr6.1:1284229-1284248	None:intergenic	40.0%
	ATTGTCCACTTGGAAAGCTT+TGG	+	chr6.1:1284494-1284513	None:intergenic	40.0%
	CAACACGATAAGAATCTCAG+TGG	+	chr6.1:1284236-1284255	None:intergenic	40.0%
	CACTGAGATTCTTATCGTGT+TGG	-	chr6.1:1284234-1284253	MS.gene82855:CDS	40.0%
	CCAAGTGGACAATAACATAG+TGG	-	chr6.1:1284501-1284520	MS.gene82855:CDS	40.0%
	CCACACAAAAGTCTTGCAAA+GGG	+	chr6.1:1283792-1283811	None:intergenic	40.0%
	CCACTATGTTATTGTCCACT+TGG	+	chr6.1:1284504-1284523	None:intergenic	40.0%
	GAGATTCTTATCGTGTTGGA+GGG	-	chr6.1:1284238-1284257	MS.gene82855:CDS	40.0%
	GATGTCTTCGTGTTTCCAAT+TGG	-	chr6.1:1284331-1284350	MS.gene82855:intron	40.0%
	TGAAAGTGAATGAGGCCAAT+TGG	+	chr6.1:1284349-1284368	None:intergenic	40.0%
	TGAGATTCTTATCGTGTTGG+AGG	-	chr6.1:1284237-1284256	MS.gene82855:CDS	40.0%
	TGTGAATGGCAAATTCTGCA+AGG	-	chr6.1:1284021-1284040	MS.gene82855:CDS	40.0%
!	TAAGAATCTCAGTGGCTCTA+GGG	+	chr6.1:1284228-1284247	None:intergenic	40.0%
!	TTCTTCTACTCGGTGAAAGA+AGG	-	chr6.1:1284070-1284089	MS.gene82855:CDS	40.0%
!	TTTGTGATGAGACGGTTTTC+TGG	+	chr6.1:1284295-1284314	None:intergenic	40.0%
!!	TCATTTGCTGTAGCATGCTT+TGG	+	chr6.1:1284049-1284068	None:intergenic	40.0%
!!	TGGAGGGTACTCTTTATGTT+GGG	-	chr6.1:1284254-1284273	MS.gene82855:intron	40.0%
!!	TTGGAGGGTACTCTTTATGT+TGG	-	chr6.1:1284253-1284272	MS.gene82855:intron	40.0%
	ACAAGATGCTAAAGCCAAGC+AGG	+	chr6.1:1283749-1283768	None:intergenic	45.0%
	CAAAAGTCTTGCAAAGGGCT+AGG	+	chr6.1:1283787-1283806	None:intergenic	45.0%
	GCCACACAAAAGTCTTGCAA+AGG	+	chr6.1:1283793-1283812	None:intergenic	45.0%
	GGAAATGCAGTTGTCATTGC+TGG	-	chr6.1:1284385-1284404	MS.gene82855:intron	45.0%
	TCTCACCAAAGCTTTCCAAG+TGG	-	chr6.1:1284486-1284505	MS.gene82855:CDS	45.0%
	TTGCAAAGGGCTAGGATCAA+AGG	+	chr6.1:1283779-1283798	None:intergenic	45.0%
!	CCCTTTGCAAGACTTTTGTG+TGG	-	chr6.1:1283789-1283808	MS.gene82855:CDS	45.0%
!!!	GGTGTCACTTTTGAACCAAG+TGG	+	chr6.1:1284109-1284128	None:intergenic	45.0%
	AGGGCTAGGATCAAAGGCAA+AGG	+	chr6.1:1283773-1283792	None:intergenic	50.0%
	CTTGTTTGTGACTGCCTGCT+TGG	-	chr6.1:1283732-1283751	MS.gene82855:CDS	50.0%
	GGACTTAGCAGCCAAAATCC+AGG	-	chr6.1:1284406-1284425	MS.gene82855:intron	50.0%
!!	TCGCATTGACTTCGCTGCTA+GGG	-	chr6.1:1284180-1284199	MS.gene82855:CDS	50.0%
!!	CGCATTGACTTCGCTGCTAG+GGG	-	chr6.1:1284181-1284200	MS.gene82855:CDS	55.0%
!!	CTCGCATTGACTTCGCTGCT+AGG	-	chr6.1:1284179-1284198	MS.gene82855:CDS	55.0%
!!	GCTCTAGGGTGAGTATGTGG+AGG	+	chr6.1:1284214-1284233	None:intergenic	55.0%
!!	GTGGCTCTAGGGTGAGTATG+TGG	+	chr6.1:1284217-1284236	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	1283718	1284561	1283718	ID=MS.gene82855
chr6.1	mRNA	1283718	1284561	1283718	ID=MS.gene82855.t1;Parent=MS.gene82855
chr6.1	exon	1284444	1284561	1284444	ID=MS.gene82855.t1.exon1;Parent=MS.gene82855.t1
chr6.1	CDS	1284444	1284561	1284444	ID=cds.MS.gene82855.t1;Parent=MS.gene82855.t1
chr6.1	exon	1283718	1284262	1283718	ID=MS.gene82855.t1.exon2;Parent=MS.gene82855.t1
chr6.1	CDS	1283718	1284262	1283718	ID=cds.MS.gene82855.t1;Parent=MS.gene82855.t1

Gene Sequence

>MS.gene82855

ATGAAGACTTCAATCTTGTTTGTGACTGCCTGCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCTAGCCCTTTGCAAGACTTTTGTGTGGCTATCAATGATACCAAGAATGGTGGTATGTATACTTTTTTTACACTTATTTATTTATTCATCTTTACTCTTTTGATTCAACCCGTTAAACTGATTGAACTATGATACAAAAGTCTCACGGATTCAATCTCATGTCCGACAACATTAATATATACGTATATAAGTGGAGCATATTATTTAATTACATGATAAAATTTGTTGTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCATGCTACAGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACACCGGTTACAGTTAATGAGATACTAGGACTAAACACTTTAGGTATCTCTCTTGCTCGCATTGACTTCGCTGCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCAGTTGTCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG

Protein sequence

>MS.gene82855.t1

MKTSILFVTACLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKHATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFAARGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVVIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN