AlfalfaGEDB | MS.gene82857

M. sativa cultivar XinJiangDaYe / MS.gene82857

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82857.t1	XP_003618164.1	95.9	220	9	0	1	220	1	220	4.00E-115	424.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82857.t1	Q6K5Q0	67.0	218	67	3	1	215	1	216	3.0e-71	269.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82857.t1	G7KQ17	95.9	220	9	0	1	220	1	220	2.9e-115	424.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene82857	0.822251	2.62E-53	-1.69E-46
MS.gene050096	MS.gene82857	0.814225	1.72E-51	-1.69E-46
MS.gene050381	MS.gene82857	0.804346	2.26E-49	-1.69E-46
MS.gene050647	MS.gene82857	0.852524	4.36E-61	-1.69E-46
MS.gene051385	MS.gene82857	0.801375	9.27E-49	-1.69E-46
MS.gene05240	MS.gene82857	0.838921	2.16E-57	-1.69E-46
MS.gene053030	MS.gene82857	0.800582	1.35E-48	-1.69E-46
MS.gene053031	MS.gene82857	0.864532	1.14E-64	-1.69E-46
MS.gene053033	MS.gene82857	0.830151	3.45E-55	-1.69E-46
MS.gene053406	MS.gene82857	0.80896	2.40E-50	-1.69E-46
MS.gene054146	MS.gene82857	0.805449	1.33E-49	-1.69E-46
MS.gene054147	MS.gene82857	0.817197	3.74E-52	-1.69E-46
MS.gene054290	MS.gene82857	0.818232	2.18E-52	-1.69E-46
MS.gene054742	MS.gene82857	0.836622	8.40E-57	-1.69E-46
MS.gene05483	MS.gene82857	0.813978	1.95E-51	-1.69E-46
MS.gene055124	MS.gene82857	0.804796	1.82E-49	-1.69E-46
MS.gene056590	MS.gene82857	0.810917	9.08E-51	-1.69E-46
MS.gene056591	MS.gene82857	0.809829	1.56E-50	-1.69E-46
MS.gene056920	MS.gene82857	0.816438	5.53E-52	-1.69E-46
MS.gene059955	MS.gene82857	0.806989	6.29E-50	-1.69E-46
MS.gene060087	MS.gene82857	0.807125	5.89E-50	-1.69E-46
MS.gene061094	MS.gene82857	0.804024	2.63E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene70062	MS.gene82857	PPI
MS.gene82857	MS.gene053031	PPI
MS.gene82857	MS.gene82859	PPI
MS.gene032599	MS.gene82857	PPI
MS.gene07591	MS.gene82857	PPI
MS.gene89774	MS.gene82857	PPI
MS.gene82857	MS.gene07591	PPI
MS.gene053029	MS.gene82857	PPI
MS.gene053030	MS.gene82857	PPI
MS.gene82857	MS.gene037520	PPI
MS.gene037520	MS.gene82857	PPI
MS.gene82859	MS.gene82857	PPI
MS.gene89775	MS.gene82857	PPI
MS.gene82855	MS.gene82857	PPI
MS.gene50786	MS.gene82857	PPI
MS.gene82857	MS.gene50789	PPI
MS.gene053031	MS.gene82857	PPI
MS.gene032601	MS.gene82857	PPI
MS.gene037518	MS.gene82857	PPI
MS.gene053026	MS.gene82857	PPI
MS.gene032597	MS.gene82857	PPI
MS.gene96244	MS.gene82857	PPI
MS.gene005041	MS.gene82857	PPI
MS.gene82857	MS.gene82855	PPI
MS.gene82857	MS.gene70061	PPI
MS.gene70061	MS.gene82857	PPI
MS.gene82858	MS.gene82857	PPI
MS.gene037519	MS.gene82857	PPI
MS.gene82857	MS.gene037518	PPI
MS.gene004411	MS.gene82857	PPI
MS.gene002728	MS.gene82857	PPI
MS.gene037517	MS.gene82857	PPI
MS.gene032596	MS.gene82857	PPI
MS.gene82860	MS.gene82857	PPI
MS.gene50788	MS.gene82857	PPI
MS.gene89772	MS.gene82857	PPI
MS.gene82857	MS.gene047464	PPI
MS.gene047464	MS.gene82857	PPI
MS.gene037516	MS.gene82857	PPI
MS.gene50790	MS.gene82857	PPI
MS.gene032598	MS.gene82857	PPI
MS.gene89773	MS.gene82857	PPI
MS.gene70063	MS.gene82857	PPI
MS.gene053033	MS.gene82857	PPI
MS.gene053027	MS.gene82857	PPI
MS.gene50789	MS.gene82857	PPI
MS.gene70064	MS.gene82857	PPI
MS.gene74887	MS.gene82857	PPI
MS.gene50787	MS.gene82857	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82857.t1	MTR_6g005330	95.909	220	9	0	1	220	1	220	3.28e-154	426
MS.gene82857.t1	MTR_6g005360	94.091	220	13	0	1	220	1	220	3.67e-151	419
MS.gene82857.t1	MTR_6g005310	94.064	219	13	0	1	219	1	219	8.10e-150	415
MS.gene82857.t1	MTR_6g005340	93.636	220	14	0	1	220	1	220	1.18e-149	415
MS.gene82857.t1	MTR_1g079490	80.000	220	41	3	4	220	3	222	1.38e-123	349
MS.gene82857.t1	MTR_4g017040	75.113	221	54	1	1	220	1	221	2.79e-118	335
MS.gene82857.t1	MTR_2g019250	77.027	222	48	3	1	220	1	221	3.05e-118	335
MS.gene82857.t1	MTR_4g017050	76.577	222	49	3	1	220	1	221	5.27e-118	335
MS.gene82857.t1	MTR_5g046410	76.577	222	49	3	1	220	1	221	6.35e-118	335
MS.gene82857.t1	MTR_5g046430	76.577	222	49	3	1	220	1	221	6.35e-118	335
MS.gene82857.t1	MTR_4g017030	76.577	222	49	3	1	220	1	221	6.35e-118	335
MS.gene82857.t1	MTR_6g005350	74.545	220	55	1	1	220	1	219	1.28e-112	321
MS.gene82857.t1	MTR_6g005380	72.115	208	57	1	1	207	1	208	9.25e-104	298
MS.gene82857.t1	MTR_1g023770	62.814	199	64	2	19	215	19	209	9.07e-84	248
MS.gene82857.t1	MTR_2g030855	62.814	199	67	3	19	215	19	212	1.48e-81	242
MS.gene82857.t1	MTR_2g031270	62.000	200	68	4	19	215	19	213	7.67e-79	235
MS.gene82857.t1	MTR_2g030895	64.535	172	58	2	47	215	7	178	1.77e-74	223
MS.gene82857.t1	MTR_2g030865	64.535	172	58	2	47	215	7	178	5.06e-73	219
MS.gene82857.t1	MTR_1g085500	47.143	210	101	4	11	214	8	213	3.30e-60	188
MS.gene82857.t1	MTR_2g031300	57.895	171	49	3	47	215	7	156	5.57e-59	183
MS.gene82857.t1	MTR_7g111240	51.020	196	90	3	22	215	20	211	1.02e-56	179
MS.gene82857.t1	MTR_1g085140	48.000	200	98	3	18	215	20	215	2.77e-55	176
MS.gene82857.t1	MTR_7g111240	51.020	196	87	4	22	215	20	208	4.81e-54	172
MS.gene82857.t1	MTR_5g036570	47.208	197	97	4	22	215	27	219	3.13e-52	168
MS.gene82857.t1	MTR_1g112200	42.791	215	107	6	3	215	7	207	1.39e-47	155
MS.gene82857.t1	MTR_1g060120	38.914	221	124	5	2	215	5	221	2.75e-45	150
MS.gene82857.t1	MTR_8g020750	46.597	191	91	4	1	189	3	184	5.40e-44	147
MS.gene82857.t1	MTR_2g041550	44.920	187	95	4	28	212	23	203	7.52e-42	141
MS.gene82857.t1	MTR_2g041570	40.000	215	116	6	1	213	1	204	1.96e-37	130
MS.gene82857.t1	MTR_2g041580	40.187	214	115	6	1	212	1	203	2.48e-37	129
MS.gene82857.t1	MTR_8g020630	38.249	217	120	6	1	215	1	205	2.63e-36	127
MS.gene82857.t1	MTR_8g007300	39.796	196	113	4	5	199	10	201	4.61e-36	126
MS.gene82857.t1	MTR_8g020650	40.741	189	104	4	28	215	24	205	2.16e-35	124
MS.gene82857.t1	MTR_3g019710	38.967	213	116	5	4	215	6	205	4.35e-35	124
MS.gene82857.t1	MTR_8g020590	36.279	215	122	5	1	213	1	202	1.92e-34	122
MS.gene82857.t1	MTR_3g019650	37.441	211	118	5	6	215	7	204	1.30e-33	120
MS.gene82857.t1	MTR_2g045100	40.314	191	106	4	26	215	22	205	1.55e-33	120
MS.gene82857.t1	MTR_2g044040	37.615	218	120	6	1	215	1	205	4.73e-33	118
MS.gene82857.t1	MTR_8g020770	38.009	221	116	6	1	215	3	208	5.05e-33	118
MS.gene82857.t1	MTR_2g036120	37.615	218	120	6	1	215	1	205	6.88e-33	118
MS.gene82857.t1	MTR_3g019680	37.441	211	118	5	6	215	7	204	7.46e-33	118
MS.gene82857.t1	MTR_8g020670	38.220	191	110	4	26	215	22	205	2.10e-32	117
MS.gene82857.t1	MTR_4g010340	38.947	190	107	5	27	215	20	201	1.18e-31	115
MS.gene82857.t1	MTR_8g020610	40.000	190	104	6	28	215	22	203	7.65e-31	112
MS.gene82857.t1	MTR_8g020760	36.073	219	124	6	1	215	1	207	9.52e-31	112
MS.gene82857.t1	MTR_2g019780	36.574	216	126	6	1	215	3	208	6.74e-30	110
MS.gene82857.t1	MTR_3g096330	34.884	215	133	4	1	211	553	764	1.51e-29	115
MS.gene82857.t1	MTR_5g031460	34.562	217	128	6	1	215	1	205	4.91e-29	108
MS.gene82857.t1	MTR_0284s0010	35.780	218	124	7	1	215	1	205	1.55e-28	107
MS.gene82857.t1	MTR_8g020763	36.000	175	105	3	43	215	17	186	6.46e-28	104
MS.gene82857.t1	MTR_4g052770	41.259	143	79	3	74	215	67	205	1.08e-27	104
MS.gene82857.t1	MTR_4g052780	41.259	143	79	3	74	215	67	205	1.46e-27	104
MS.gene82857.t1	MTR_2g086640	35.814	215	119	7	2	215	7	203	1.97e-27	103
MS.gene82857.t1	MTR_7g011340	36.126	191	114	4	26	215	22	205	2.02e-27	103
MS.gene82857.t1	MTR_2g086620	42.963	135	72	3	82	215	74	204	3.37e-27	103
MS.gene82857.t1	MTR_2g086630	42.963	135	72	3	82	215	74	204	4.83e-27	103
MS.gene82857.t1	MTR_3g073170	36.126	191	108	6	28	215	27	206	5.10e-26	100
MS.gene82857.t1	MTR_2g030915	54.667	75	20	1	93	167	1	61	7.49e-20	81.3
MS.gene82857.t1	MTR_3g019810	32.710	214	124	8	1	212	107	302	3.29e-19	84.3
MS.gene82857.t1	MTR_4g027415	38.889	126	71	3	26	150	22	142	5.25e-17	75.1
MS.gene82857.t1	MTR_2g072560	41.346	104	58	2	18	120	14	115	6.42e-14	67.0
MS.gene82857.t1	MTR_3g019610	39.815	108	56	3	4	110	6	105	5.79e-12	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82857.t1	AT5G39120	64.352	216	74	2	3	215	4	219	3.08e-93	272
MS.gene82857.t1	AT5G39150	63.889	216	75	2	3	215	4	219	2.16e-92	270
MS.gene82857.t1	AT5G39180	63.889	216	75	2	3	215	4	219	3.03e-92	270
MS.gene82857.t1	AT5G39110	64.516	217	73	3	2	215	5	220	6.40e-91	266
MS.gene82857.t1	AT5G38940	66.837	196	63	1	22	215	26	221	7.11e-90	264
MS.gene82857.t1	AT5G38940	66.837	196	63	1	22	215	50	245	1.13e-89	264
MS.gene82857.t1	AT5G39160	67.337	199	61	3	20	215	22	219	1.40e-89	263
MS.gene82857.t1	AT3G05950	64.414	222	71	5	1	215	1	221	1.89e-89	263
MS.gene82857.t1	AT5G39190	67.337	199	61	3	20	215	22	219	2.10e-89	263
MS.gene82857.t1	AT5G39130	66.834	199	62	3	20	215	22	219	4.31e-89	262
MS.gene82857.t1	AT5G38930	67.172	198	63	1	20	215	24	221	5.26e-89	261
MS.gene82857.t1	AT5G38910	63.470	219	76	4	1	215	1	219	5.66e-87	256
MS.gene82857.t1	AT5G38960	64.677	201	68	2	18	215	22	222	9.56e-87	256
MS.gene82857.t1	AT5G39160	64.824	199	62	3	20	215	22	215	7.73e-85	251
MS.gene82857.t1	AT4G14630	64.824	199	67	2	20	215	24	222	1.46e-84	250
MS.gene82857.t1	AT3G04200	65.550	209	67	4	11	215	15	222	1.33e-83	248
MS.gene82857.t1	AT5G39190	60.406	197	56	2	20	215	22	197	6.94e-75	225
MS.gene82857.t1	AT3G04150	56.757	222	88	5	1	215	1	221	1.42e-74	225
MS.gene82857.t1	AT5G39160	59.898	197	57	2	20	215	22	197	1.52e-74	224
MS.gene82857.t1	AT3G04150	54.274	234	88	5	1	215	1	234	1.18e-73	223
MS.gene82857.t1	AT3G04190	58.333	204	81	3	15	215	19	221	1.21e-72	220
MS.gene82857.t1	AT3G04170	54.955	222	89	6	1	215	1	218	1.03e-69	213
MS.gene82857.t1	AT3G04180	55.392	204	87	3	15	215	19	221	1.56e-69	212
MS.gene82857.t1	AT5G38910	51.598	219	65	5	1	215	1	182	2.55e-60	187
MS.gene82857.t1	AT3G62020	47.642	212	104	4	7	215	8	215	2.89e-57	181
MS.gene82857.t1	AT1G09560	50.254	197	92	3	22	216	24	216	3.03e-57	181
MS.gene82857.t1	AT1G02335	46.970	198	99	3	20	215	22	215	3.57e-56	178
MS.gene82857.t1	AT1G18970	45.205	219	109	5	1	217	11	220	2.09e-55	176
MS.gene82857.t1	AT3G05930	45.581	215	109	4	4	215	6	215	1.09e-54	174
MS.gene82857.t1	AT1G18980	46.789	218	102	6	7	217	10	220	1.84e-54	174
MS.gene82857.t1	AT5G26700	46.890	209	92	6	11	215	16	209	1.73e-53	171
MS.gene82857.t1	AT1G10460	43.216	199	106	5	22	215	19	215	1.56e-49	161
MS.gene82857.t1	AT3G62020	48.333	180	88	3	39	215	9	186	1.14e-48	158
MS.gene82857.t1	AT3G10080	41.872	203	106	5	19	215	23	219	4.06e-44	147
MS.gene82857.t1	AT3G10080	41.176	204	108	5	18	215	93	290	2.12e-43	148
MS.gene82857.t1	AT5G20630	41.627	209	111	5	1	207	1	200	2.83e-41	140
MS.gene82857.t1	AT5G61750	41.000	200	105	5	4	198	6	197	9.84e-39	133
MS.gene82857.t1	AT1G74820	38.605	215	116	5	11	215	17	225	1.02e-37	131
MS.gene82857.t1	AT1G72610	39.153	189	107	4	26	212	19	201	2.13e-34	122
MS.gene82857.t1	AT5G38950	60.563	71	28	0	144	214	2	72	1.10e-21	86.3
MS.gene82857.t1	AT5G39100	65.455	55	18	1	2	56	5	58	1.34e-16	71.6

Find 49 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATTGCTAATGCTGTATT+TGG	0.046653	6.1:-1295959	MS.gene82857:CDS
TAGTAATAACACCTGGATTT+TGG	0.212711	6.1:+1295978	None:intergenic
AGAACTTCTGAAGAGATCTT+TGG	0.276106	6.1:+1295929	None:intergenic
TTCACTTTCAATTGAATGTT+GGG	0.325573	6.1:-1296036	MS.gene82857:CDS
GGAAATGCTCTCGCCATTGC+TGG	0.341695	6.1:-1296010	MS.gene82857:CDS
ATTATCCACTTGAAAAGCTT+TGG	0.360758	6.1:+1295904	None:intergenic
TCATTTGCCGTAGCATGCTT+TGG	0.383442	6.1:+1296349	None:intergenic
TAGTCCTAGTATCTCATTAA+CGG	0.408621	6.1:+1296261	None:intergenic
TGAAAGTGAATGAGGCCAAT+TGG	0.419001	6.1:+1296049	None:intergenic
CTATTGCTAATGCTGTATTT+GGG	0.423500	6.1:-1295958	MS.gene82857:CDS
AGTATCTCATTAACGGTAAC+CGG	0.427049	6.1:+1296268	None:intergenic
TCGTATTGACTTTGCATCTA+GGG	0.428209	6.1:-1296215	MS.gene82857:CDS
ATTCACTTTCAATTGAATGT+TGG	0.434824	6.1:-1296037	MS.gene82857:CDS
TTTCAATTGAATGTTGGGTA+TGG	0.435827	6.1:-1296031	MS.gene82857:CDS
GATGTCTTCGTGTTTCCAAT+TGG	0.447280	6.1:-1296064	MS.gene82857:CDS
CTCGTATTGACTTTGCATCT+AGG	0.450503	6.1:-1296216	MS.gene82857:CDS
TTTCACAGCCTTCTTAGCAT+TGG	0.455174	6.1:-1296654	MS.gene82857:CDS
ATAAGAATCTCAGTGGCTCT+AGG	0.464256	6.1:+1296169	None:intergenic
TTCTTCTACTCGGTGAAAGA+AGG	0.467010	6.1:-1296325	MS.gene82857:CDS
CAAAAGTCTTGTAGAGGGCT+AGG	0.473790	6.1:+1296608	None:intergenic
TGAGATTCTTATAGTGTTGG+AGG	0.480868	6.1:-1296158	MS.gene82857:CDS
AGTATACATACCACCGGTCT+TGG	0.500629	6.1:+1296568	None:intergenic
ACAAGATGCCAATGCTAAGA+AGG	0.503312	6.1:+1296646	None:intergenic
TGGAGGGTACTCTCTATGTC+GGG	0.514884	6.1:-1296141	MS.gene82857:CDS
CACTGAGATTCTTATAGTGT+TGG	0.518785	6.1:-1296161	MS.gene82857:CDS
TTGGAGGGTACTCTCTATGT+CGG	0.525841	6.1:-1296142	MS.gene82857:CDS
TAAGAATCTCAGTGGCTCTA+GGG	0.542644	6.1:+1296170	None:intergenic
GTGGCTCTAGGGTGAGTATG+TGG	0.548107	6.1:+1296181	None:intergenic
GGACTTAGCAGCCAAAATCC+AGG	0.549743	6.1:-1295989	MS.gene82857:CDS
CATTCAATTGAAAGTGAATG+AGG	0.551568	6.1:+1296041	None:intergenic
GGCAAATGATTTCTTCTACT+CGG	0.569753	6.1:-1296335	MS.gene82857:CDS
GTTACCGTTAATGAGATACT+AGG	0.571440	6.1:-1296265	MS.gene82857:CDS
ATACTAGGACTAAACACTCT+AGG	0.572011	6.1:-1296250	MS.gene82857:CDS
TGTGAATGGCAAATTCTGCA+AGG	0.584711	6.1:-1296374	MS.gene82857:CDS
CGTATTGACTTTGCATCTAG+GGG	0.590107	6.1:-1296214	MS.gene82857:CDS
CAAGGATCCAAAGCATGCTA+CGG	0.595077	6.1:-1296356	MS.gene82857:CDS
TTGGCTGCTAAGTCCAGCAA+TGG	0.600072	6.1:+1295997	None:intergenic
GCAATCAATGACACCAAGAC+CGG	0.602384	6.1:-1296581	MS.gene82857:CDS
GCCACACAAAAGTCTTGTAG+AGG	0.609133	6.1:+1296602	None:intergenic
GAGATTCTTATAGTGTTGGA+GGG	0.619014	6.1:-1296157	MS.gene82857:CDS
GGAAATACATCAAATCCACT+TGG	0.640192	6.1:-1296304	MS.gene82857:CDS
ATCACAAAAGTACTCAACAA+AGG	0.644517	6.1:-1296088	MS.gene82857:CDS
CCACACAAAAGTCTTGTAGA+GGG	0.655758	6.1:+1296603	None:intergenic
ATCAATGACACCAAGACCGG+TGG	0.659585	6.1:-1296578	MS.gene82857:intron
AGGGCTAGGATCAAATGCAA+AGG	0.662548	6.1:+1296622	None:intergenic
ACTTGGTTCAAAAGTGACAC+CGG	0.669513	6.1:-1296287	MS.gene82857:CDS
GCTCTAGGGTGAGTATGTGG+AGG	0.673911	6.1:+1296184	None:intergenic
TTAGCAATAGTAATAACACC+TGG	0.687379	6.1:+1295971	None:intergenic
CAACACTATAAGAATCTCAG+TGG	0.721951	6.1:+1296162	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATGTATATATCAATGTTGT+CGG	+	chr6.1:1296085-1296104	None:intergenic	20.0%
!!!	ACAATCTTCAAAAACAATTT+TGG	-	chr6.1:1296659-1296678	MS.gene82857:CDS	20.0%
!!!	CAATCTTCAAAAACAATTTT+GGG	-	chr6.1:1296660-1296679	MS.gene82857:CDS	20.0%
!!!	TTTATTTATTTTGACTCGTT+TGG	-	chr6.1:1296001-1296020	MS.gene82857:CDS	20.0%
!	ATTCACTTTCAATTGAATGT+TGG	-	chr6.1:1296493-1296512	MS.gene82857:intron	25.0%
!	TTCACTTTCAATTGAATGTT+GGG	-	chr6.1:1296494-1296513	MS.gene82857:intron	25.0%
!!	CTTTTGTATCATAGTTCAAT+TGG	+	chr6.1:1296040-1296059	None:intergenic	25.0%
!!	TTAAAAAGTATACATACCAC+CGG	+	chr6.1:1295971-1295990	None:intergenic	25.0%
	ACTATGATACAAAAGTCTCA+CGG	-	chr6.1:1296045-1296064	MS.gene82857:CDS	30.0%
	ACTATTGCTAATGCTGTATT+TGG	-	chr6.1:1296571-1296590	MS.gene82857:intron	30.0%
	ATTATCCACTTGAAAAGCTT+TGG	+	chr6.1:1296629-1296648	None:intergenic	30.0%
	CATTCAATTGAAAGTGAATG+AGG	+	chr6.1:1296492-1296511	None:intergenic	30.0%
	CTATTGCTAATGCTGTATTT+GGG	-	chr6.1:1296572-1296591	MS.gene82857:intron	30.0%
	TAGTCCTAGTATCTCATTAA+CGG	+	chr6.1:1296272-1296291	None:intergenic	30.0%
	TTAGCAATAGTAATAACACC+TGG	+	chr6.1:1296562-1296581	None:intergenic	30.0%
	TTTCAATTGAATGTTGGGTA+TGG	-	chr6.1:1296499-1296518	MS.gene82857:intron	30.0%
!	TAGTAATAACACCTGGATTT+TGG	+	chr6.1:1296555-1296574	None:intergenic	30.0%
!	TCTTCAAAAACAATTTTGGG+TGG	-	chr6.1:1296663-1296682	MS.gene82857:CDS	30.0%
!	TGTTTTGCAGTTTTTGTGAA+TGG	-	chr6.1:1296142-1296161	MS.gene82857:CDS	30.0%
!!	ATCACAAAAGTACTCAACAA+AGG	-	chr6.1:1296442-1296461	MS.gene82857:intron	30.0%
	AGTATCTCATTAACGGTAAC+CGG	+	chr6.1:1296265-1296284	None:intergenic	35.0%
	ATACTAGGACTAAACACTCT+AGG	-	chr6.1:1296280-1296299	MS.gene82857:CDS	35.0%
	CAACACTATAAGAATCTCAG+TGG	+	chr6.1:1296371-1296390	None:intergenic	35.0%
	CACTGAGATTCTTATAGTGT+TGG	-	chr6.1:1296369-1296388	MS.gene82857:CDS	35.0%
	CTATGATACAAAAGTCTCAC+GGG	-	chr6.1:1296046-1296065	MS.gene82857:CDS	35.0%
	GGAAATACATCAAATCCACT+TGG	-	chr6.1:1296226-1296245	MS.gene82857:CDS	35.0%
	GGCAAATGATTTCTTCTACT+CGG	-	chr6.1:1296195-1296214	MS.gene82857:CDS	35.0%
	GTTACCGTTAATGAGATACT+AGG	-	chr6.1:1296265-1296284	MS.gene82857:CDS	35.0%
!	AGAACTTCTGAAGAGATCTT+TGG	+	chr6.1:1296604-1296623	None:intergenic	35.0%
!	GAGATTCTTATAGTGTTGGA+GGG	-	chr6.1:1296373-1296392	MS.gene82857:CDS	35.0%
!	TGAGATTCTTATAGTGTTGG+AGG	-	chr6.1:1296372-1296391	MS.gene82857:CDS	35.0%
!	TGAGTACTTTTGTGATGAGA+CGG	+	chr6.1:1296438-1296457	None:intergenic	35.0%
!!	TCGTATTGACTTTGCATCTA+GGG	-	chr6.1:1296315-1296334	MS.gene82857:CDS	35.0%
	ACAAGATGCCAATGCTAAGA+AGG	+	chr6.1:1295887-1295906	None:intergenic	40.0%
	ACTTGGTTCAAAAGTGACAC+CGG	-	chr6.1:1296243-1296262	MS.gene82857:CDS	40.0%
	ATAAGAATCTCAGTGGCTCT+AGG	+	chr6.1:1296364-1296383	None:intergenic	40.0%
	GATGTCTTCGTGTTTCCAAT+TGG	-	chr6.1:1296466-1296485	MS.gene82857:intron	40.0%
	TGAAAGTGAATGAGGCCAAT+TGG	+	chr6.1:1296484-1296503	None:intergenic	40.0%
	TGTGAATGGCAAATTCTGCA+AGG	-	chr6.1:1296156-1296175	MS.gene82857:CDS	40.0%
	TTTCACAGCCTTCTTAGCAT+TGG	-	chr6.1:1295876-1295895	MS.gene82857:CDS	40.0%
!	CCACACAAAAGTCTTGTAGA+GGG	+	chr6.1:1295930-1295949	None:intergenic	40.0%
!	TAAGAATCTCAGTGGCTCTA+GGG	+	chr6.1:1296363-1296382	None:intergenic	40.0%
!	TTCTTCTACTCGGTGAAAGA+AGG	-	chr6.1:1296205-1296224	MS.gene82857:CDS	40.0%
!	TTTGTGATGAGACGGTTTTC+TGG	+	chr6.1:1296430-1296449	None:intergenic	40.0%
!!	CGTATTGACTTTGCATCTAG+GGG	-	chr6.1:1296316-1296335	MS.gene82857:CDS	40.0%
!!	CTCGTATTGACTTTGCATCT+AGG	-	chr6.1:1296314-1296333	MS.gene82857:CDS	40.0%
	AGGGCTAGGATCAAATGCAA+AGG	+	chr6.1:1295911-1295930	None:intergenic	45.0%
	AGTATACATACCACCGGTCT+TGG	+	chr6.1:1295965-1295984	None:intergenic	45.0%
	CAAGGATCCAAAGCATGCTA+CGG	-	chr6.1:1296174-1296193	MS.gene82857:CDS	45.0%
	GCAATCAATGACACCAAGAC+CGG	-	chr6.1:1295949-1295968	MS.gene82857:CDS	45.0%
	TATCAATGTTGTCGGACGTG+AGG	+	chr6.1:1296077-1296096	None:intergenic	45.0%
	TCATTTGCCGTAGCATGCTT+TGG	+	chr6.1:1296184-1296203	None:intergenic	45.0%
!	CAAAAGTCTTGTAGAGGGCT+AGG	+	chr6.1:1295925-1295944	None:intergenic	45.0%
!	CCCTCTACAAGACTTTTGTG+TGG	-	chr6.1:1295927-1295946	MS.gene82857:CDS	45.0%
!	GCCACACAAAAGTCTTGTAG+AGG	+	chr6.1:1295931-1295950	None:intergenic	45.0%
!!	TCTCGCCAAAGCTTTTCAAG+TGG	-	chr6.1:1296621-1296640	MS.gene82857:CDS	45.0%
!!	TTGGAGGGTACTCTCTATGT+CGG	-	chr6.1:1296388-1296407	MS.gene82857:intron	45.0%
!!!	GGTGTCACTTTTGAACCAAG+TGG	+	chr6.1:1296244-1296263	None:intergenic	45.0%
	ATCAATGACACCAAGACCGG+TGG	-	chr6.1:1295952-1295971	MS.gene82857:CDS	50.0%
	GGACTTAGCAGCCAAAATCC+AGG	-	chr6.1:1296541-1296560	MS.gene82857:intron	50.0%
	TTGGCTGCTAAGTCCAGCAA+TGG	+	chr6.1:1296536-1296555	None:intergenic	50.0%
!!	TGGAGGGTACTCTCTATGTC+GGG	-	chr6.1:1296389-1296408	MS.gene82857:intron	50.0%
	GGAAATGCTCTCGCCATTGC+TGG	-	chr6.1:1296520-1296539	MS.gene82857:intron	55.0%
!!	GCTCTAGGGTGAGTATGTGG+AGG	+	chr6.1:1296349-1296368	None:intergenic	55.0%
!!	GTGGCTCTAGGGTGAGTATG+TGG	+	chr6.1:1296352-1296371	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	1295856	1296696	1295856	ID=MS.gene82857
chr6.1	mRNA	1295856	1296696	1295856	ID=MS.gene82857.t1;Parent=MS.gene82857
chr6.1	exon	1296579	1296696	1296579	ID=MS.gene82857.t1.exon1;Parent=MS.gene82857.t1
chr6.1	CDS	1296579	1296696	1296579	ID=cds.MS.gene82857.t1;Parent=MS.gene82857.t1
chr6.1	exon	1295856	1296400	1295856	ID=MS.gene82857.t1.exon2;Parent=MS.gene82857.t1
chr6.1	CDS	1295856	1296400	1295856	ID=cds.MS.gene82857.t1;Parent=MS.gene82857.t1

Gene Sequence

>MS.gene82857

ATGAAGAGTATTTACTTGTTTTTCACAGCCTTCTTAGCATTGGCATCTTGTGCCTTTGCATTTGATCCTAGCCCTCTACAAGACTTTTGTGTGGCAATCAATGACACCAAGACCGGTGGTATGTATACTTTTTAATACTTCTTCATTTATTTATTTTGACTCGTTTGGTCAACATGTTGAACCAATTGAACTATGATACAAAAGTCTCACGGGTTCAACCTCACGTCCGACAACATTGATATATACATATATAAGTAGAGCATGTTATTTAATTACATGATGAATTTGTTTTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCATGCTACGGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACACCGGTTACCGTTAATGAGATACTAGGACTAAACACTCTAGGTATCTCTCTTGCTCGTATTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATAGTGTTGGAGGGTACTCTCTATGTCGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCTCTCGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATTACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAGATCTCTTCAGAAGTTCTCGCCAAAGCTTTTCAAGTGGATAATAAAATAGTGAACAATCTTCAAAAACAATTTTGGGTGGACAACAACTAG

Protein sequence

>MS.gene82857.t1

MKSIYLFFTAFLALASCAFAFDPSPLQDFCVAINDTKTGVFVNGKFCKDPKHATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNALAIAGLSSQNPGVITIANAVFGSNPKISSEVLAKAFQVDNKIVNNLQKQFWVDNN