AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032601.t1 MTR_6g005360 96.818 220 7 0 1 220 1 220 4.25e-156 431
MS.gene032601.t1 MTR_6g005310 97.260 219 6 0 1 219 1 219 1.49e-155 430
MS.gene032601.t1 MTR_6g005340 96.818 220 7 0 1 220 1 220 2.46e-155 429
MS.gene032601.t1 MTR_6g005330 95.455 220 10 0 1 220 1 220 1.28e-153 425
MS.gene032601.t1 MTR_1g079490 81.279 219 38 3 5 220 4 222 1.06e-125 354
MS.gene032601.t1 MTR_4g017040 76.923 221 50 1 1 220 1 221 1.75e-121 343
MS.gene032601.t1 MTR_2g019250 76.923 221 50 1 1 220 1 221 5.97e-121 342
MS.gene032601.t1 MTR_5g046410 76.018 221 52 1 1 220 1 221 2.86e-120 340
MS.gene032601.t1 MTR_5g046430 76.018 221 52 1 1 220 1 221 2.86e-120 340
MS.gene032601.t1 MTR_4g017030 76.018 221 52 1 1 220 1 221 2.86e-120 340
MS.gene032601.t1 MTR_4g017050 76.018 221 52 1 1 220 1 221 2.96e-120 340
MS.gene032601.t1 MTR_6g005350 75.455 220 53 1 1 220 1 219 7.57e-114 324
MS.gene032601.t1 MTR_6g005380 72.115 208 57 1 1 207 1 208 3.45e-104 300
MS.gene032601.t1 MTR_1g023770 62.814 199 64 2 19 215 19 209 3.14e-84 249
MS.gene032601.t1 MTR_2g030855 62.312 199 68 2 19 215 19 212 2.23e-83 247
MS.gene032601.t1 MTR_2g031270 62.000 200 68 3 19 215 19 213 1.08e-80 240
MS.gene032601.t1 MTR_2g030895 65.116 172 57 2 47 215 7 178 7.67e-76 226
MS.gene032601.t1 MTR_2g030865 65.116 172 57 2 47 215 7 178 2.37e-74 223
MS.gene032601.t1 MTR_2g031300 60.000 160 42 2 47 204 7 146 1.28e-59 184
MS.gene032601.t1 MTR_1g085500 47.143 210 101 4 11 214 8 213 2.21e-59 186
MS.gene032601.t1 MTR_7g111240 51.531 196 89 3 22 215 20 211 7.60e-57 179
MS.gene032601.t1 MTR_1g085140 48.500 200 97 3 18 215 20 215 7.95e-56 177
MS.gene032601.t1 MTR_7g111240 51.020 196 87 3 22 215 20 208 2.15e-54 173
MS.gene032601.t1 MTR_5g036570 47.716 197 96 4 22 215 27 219 5.35e-53 170
MS.gene032601.t1 MTR_1g112200 42.791 215 107 6 3 215 7 207 1.26e-47 156
MS.gene032601.t1 MTR_1g060120 38.462 221 125 5 2 215 5 221 5.41e-44 147
MS.gene032601.t1 MTR_2g041550 45.455 187 94 4 28 212 23 203 1.49e-42 143
MS.gene032601.t1 MTR_8g020750 47.337 169 75 4 27 189 24 184 1.08e-41 140
MS.gene032601.t1 MTR_2g041580 38.785 214 116 5 1 212 3 203 1.85e-38 132
MS.gene032601.t1 MTR_2g041570 38.605 215 117 5 1 213 3 204 1.98e-38 132
MS.gene032601.t1 MTR_8g007300 41.899 179 100 3 22 199 26 201 3.90e-35 124
MS.gene032601.t1 MTR_8g020590 39.474 190 107 4 26 213 19 202 5.54e-35 123
MS.gene032601.t1 MTR_8g020630 37.688 199 116 4 18 215 14 205 6.79e-34 120
MS.gene032601.t1 MTR_3g019710 38.693 199 114 4 18 215 14 205 8.32e-34 120
MS.gene032601.t1 MTR_8g020650 39.683 189 106 4 28 215 24 205 2.43e-33 119
MS.gene032601.t1 MTR_3g019680 37.441 211 118 5 6 215 7 204 2.42e-32 117
MS.gene032601.t1 MTR_3g019650 36.967 211 119 5 6 215 7 204 5.65e-32 115
MS.gene032601.t1 MTR_2g045100 37.441 211 119 5 6 215 7 205 1.04e-31 115
MS.gene032601.t1 MTR_2g036120 37.688 199 116 4 18 215 14 205 1.62e-31 114
MS.gene032601.t1 MTR_8g020670 37.173 191 112 4 26 215 22 205 2.22e-30 111
MS.gene032601.t1 MTR_8g020610 39.474 190 105 6 28 215 22 203 3.45e-30 111
MS.gene032601.t1 MTR_4g010340 39.080 174 99 4 43 215 34 201 3.98e-30 110
MS.gene032601.t1 MTR_2g044040 36.683 199 118 4 18 215 14 205 4.84e-30 110
MS.gene032601.t1 MTR_8g020770 37.500 216 114 6 6 215 8 208 7.26e-30 110
MS.gene032601.t1 MTR_3g096330 33.649 211 135 4 3 211 557 764 6.08e-29 114
MS.gene032601.t1 MTR_2g019780 34.101 217 132 6 1 215 1 208 3.95e-28 105
MS.gene032601.t1 MTR_8g020763 36.000 175 105 3 43 215 17 186 1.00e-27 104
MS.gene032601.t1 MTR_8g020760 34.123 211 131 4 6 215 4 207 1.05e-27 104
MS.gene032601.t1 MTR_5g031460 34.171 199 123 4 18 215 14 205 2.47e-27 103
MS.gene032601.t1 MTR_0284s0010 35.176 199 121 4 18 215 14 205 2.60e-27 103
MS.gene032601.t1 MTR_7g011340 35.602 191 115 4 26 215 22 205 9.82e-27 102
MS.gene032601.t1 MTR_4g052770 39.161 143 82 3 74 215 67 205 4.10e-26 100
MS.gene032601.t1 MTR_2g086620 34.562 217 111 8 6 215 12 204 5.99e-26 100
MS.gene032601.t1 MTR_4g052780 39.161 143 82 3 74 215 67 205 6.60e-26 100
MS.gene032601.t1 MTR_2g086630 34.562 217 111 8 6 215 12 204 7.97e-26 99.8
MS.gene032601.t1 MTR_3g073170 35.450 189 112 5 28 215 27 206 4.66e-25 97.8
MS.gene032601.t1 MTR_2g086640 34.123 211 120 7 6 215 11 203 7.21e-25 97.4
MS.gene032601.t1 MTR_2g030915 55.405 74 19 1 93 166 1 60 9.17e-20 80.9
MS.gene032601.t1 MTR_3g019810 32.487 197 117 7 18 212 120 302 4.83e-17 78.6
MS.gene032601.t1 MTR_4g027415 38.889 126 71 3 26 150 22 142 1.66e-16 73.6
MS.gene032601.t1 MTR_2g072560 41.346 104 58 2 18 120 14 115 1.83e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032601.t1 AT5G39120 64.840 219 73 3 1 215 1 219 3.08e-93 272
MS.gene032601.t1 AT5G39150 64.384 219 74 3 1 215 1 219 1.81e-92 270
MS.gene032601.t1 AT5G39180 64.384 219 74 3 1 215 1 219 3.03e-92 270
MS.gene032601.t1 AT5G39110 64.651 215 73 2 4 215 6 220 1.46e-91 268
MS.gene032601.t1 AT5G38940 67.347 196 62 1 22 215 26 221 1.55e-90 265
MS.gene032601.t1 AT5G38940 67.347 196 62 1 22 215 50 245 2.61e-90 266
MS.gene032601.t1 AT5G38930 67.677 198 62 1 20 215 24 221 9.44e-90 263
MS.gene032601.t1 AT3G05950 66.986 209 64 4 11 215 14 221 1.59e-88 261
MS.gene032601.t1 AT5G39130 66.332 199 63 3 20 215 22 219 1.73e-88 260
MS.gene032601.t1 AT5G39160 66.834 199 62 3 20 215 22 219 1.79e-88 260
MS.gene032601.t1 AT5G39190 63.636 220 74 5 1 215 1 219 2.59e-88 260
MS.gene032601.t1 AT5G38910 63.470 219 76 4 1 215 1 219 8.44e-88 258
MS.gene032601.t1 AT5G38960 64.677 201 68 2 18 215 22 222 2.84e-87 257
MS.gene032601.t1 AT4G14630 61.574 216 79 3 4 215 7 222 1.16e-85 253
MS.gene032601.t1 AT5G39160 64.322 199 63 3 20 215 22 215 1.03e-83 248
MS.gene032601.t1 AT3G04200 63.426 216 72 4 6 215 8 222 3.76e-82 244
MS.gene032601.t1 AT3G04150 57.658 222 86 5 1 215 1 221 2.17e-75 227
MS.gene032601.t1 AT3G04190 59.804 204 78 3 15 215 19 221 3.72e-75 226
MS.gene032601.t1 AT5G39190 57.339 218 69 4 1 215 1 197 2.05e-74 224
MS.gene032601.t1 AT5G39160 56.881 218 70 4 1 215 1 197 5.18e-74 223
MS.gene032601.t1 AT3G04150 54.274 234 88 5 1 215 1 234 3.83e-73 222
MS.gene032601.t1 AT3G04170 56.279 215 86 5 5 215 8 218 1.72e-71 217
MS.gene032601.t1 AT3G04180 56.863 204 84 3 15 215 19 221 2.32e-71 217
MS.gene032601.t1 AT5G38910 51.598 219 65 5 1 215 1 182 2.82e-61 190
MS.gene032601.t1 AT1G09560 50.254 197 92 3 22 216 24 216 1.38e-57 182
MS.gene032601.t1 AT1G02335 47.980 198 97 3 20 215 22 215 1.49e-57 181
MS.gene032601.t1 AT3G62020 47.642 212 104 4 7 215 8 215 2.26e-56 179
MS.gene032601.t1 AT3G05930 46.364 220 108 5 1 215 1 215 5.82e-56 177
MS.gene032601.t1 AT1G18970 46.009 213 107 4 7 217 14 220 1.16e-55 177
MS.gene032601.t1 AT1G18980 46.296 216 106 5 4 217 13 220 4.33e-54 173
MS.gene032601.t1 AT5G26700 46.890 209 92 6 11 215 16 209 2.18e-53 171
MS.gene032601.t1 AT3G62020 48.889 180 87 3 39 215 9 186 3.31e-49 159
MS.gene032601.t1 AT1G10460 42.211 199 108 5 22 215 19 215 5.80e-48 157
MS.gene032601.t1 AT3G10080 40.796 201 111 4 19 215 23 219 4.98e-44 147
MS.gene032601.t1 AT3G10080 40.594 202 112 4 18 215 93 290 2.26e-43 147
MS.gene032601.t1 AT5G20630 43.976 166 87 3 26 189 22 183 4.46e-39 134
MS.gene032601.t1 AT5G61750 41.848 184 97 4 6 187 8 183 1.29e-37 130
MS.gene032601.t1 AT1G74820 37.615 218 120 5 8 215 14 225 3.86e-36 127
MS.gene032601.t1 AT1G72610 38.095 189 109 4 26 212 19 201 1.64e-32 117
MS.gene032601.t1 AT5G38950 64.062 64 23 0 144 207 2 65 2.61e-20 82.8
MS.gene032601.t1 AT5G39100 66.038 53 18 0 4 56 6 58 2.66e-17 73.6

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGCTAATGCTGTATT+TGG 0.057045 6.3:-1423988 MS.gene032601:CDS
CTTGTTTGTGACAGCCTTCT+TGG 0.126065 6.3:-1424691 MS.gene032601:CDS
TAGTGATTACACCTGGATTT+TGG 0.253401 6.3:+1424007 None:intergenic
TTCACTTTCAATTGAATGTT+GGG 0.325573 6.3:-1424065 MS.gene032601:CDS
AGTATACATACCACCATTCT+TGG 0.333982 6.3:+1424599 None:intergenic
ATACTAGGACTAAACACTTT+AGG 0.375557 6.3:-1424279 MS.gene032601:CDS
TCATTTGCAGTAGCAAGCTT+TGG 0.385081 6.3:+1424378 None:intergenic
TTGGAGGGCACTCTTTATGT+TGG 0.393903 6.3:-1424171 MS.gene032601:CDS
GGAAATGCAGTTGTCATTGC+TGG 0.408325 6.3:-1424039 MS.gene032601:CDS
TGGAGGGCACTCTTTATGTT+GGG 0.413131 6.3:-1424170 MS.gene032601:CDS
AGTATCTCATTAACTGTAAC+CGG 0.413639 6.3:+1424297 None:intergenic
CCACTATGTTATTGTCCACT+TGG 0.415021 6.3:+1423923 None:intergenic
TGAAAGTGAATGAGGCCAAT+TGG 0.419001 6.3:+1424078 None:intergenic
ATTCACTTTCAATTGAATGT+TGG 0.434824 6.3:-1424066 MS.gene032601:CDS
TTTCAATTGAATGTTGGGTA+TGG 0.435827 6.3:-1424060 MS.gene032601:CDS
ACAAAAGTCTTGTAAAGGGC+TGG 0.441843 6.3:+1424638 None:intergenic
GATGTCTTCGTGTTTCCAAT+TGG 0.447280 6.3:-1424093 MS.gene032601:CDS
CTATTGCTAATGCTGTATTT+GGG 0.459960 6.3:-1423987 MS.gene032601:CDS
ATTGTCCACTTGGAAAGCTT+TGG 0.467417 6.3:+1423933 None:intergenic
ATAAGAATCTCAGTGGCTCT+AGG 0.470121 6.3:+1424198 None:intergenic
TTCTTCTACTCAGTGAAAGA+AGG 0.477471 6.3:-1424354 MS.gene032601:CDS
TGAGATTCTTATCGTGTTGG+AGG 0.479548 6.3:-1424187 MS.gene032601:CDS
TCGCATTGACTTCGCTGCTA+GGG 0.481033 6.3:-1424244 MS.gene032601:CDS
GCCACACAAAAGTCTTGTAA+AGG 0.484515 6.3:+1424633 None:intergenic
CTCGCATTGACTTCGCTGCT+AGG 0.500918 6.3:-1424245 MS.gene032601:CDS
CCACACAAAAGTCTTGTAAA+GGG 0.505298 6.3:+1424634 None:intergenic
CAAAAGTCTTGTAAAGGGCT+GGG 0.515376 6.3:+1424639 None:intergenic
TTGTAAAGGGCTGGGATCAA+AGG 0.516879 6.3:+1424647 None:intergenic
CACTGAGATTCTTATCGTGT+TGG 0.542092 6.3:-1424190 MS.gene032601:CDS
GTGGCTCTAGGGTGAGTATG+TGG 0.548107 6.3:+1424210 None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG 0.548530 6.3:+1424199 None:intergenic
CGCATTGACTTCGCTGCTAG+GGG 0.548623 6.3:-1424243 MS.gene032601:CDS
GGACTTAGCAGCCAAAATCC+AGG 0.549743 6.3:-1424018 MS.gene032601:CDS
CATTCAATTGAAAGTGAATG+AGG 0.551568 6.3:+1424070 None:intergenic
GTTACAGTTAATGAGATACT+AGG 0.558743 6.3:-1424294 MS.gene032601:CDS
ACAAGATGCTAAAGCCAAGA+AGG 0.574992 6.3:+1424677 None:intergenic
TGTGAATGGCAAATTCTGCA+AGG 0.584711 6.3:-1424403 MS.gene032601:CDS
GAGATTCTTATCGTGTTGGA+GGG 0.598384 6.3:-1424186 MS.gene032601:CDS
CCAAGTGGACAATAACATAG+TGG 0.613774 6.3:-1423923 MS.gene032601:CDS
TTAGCAATAGTGATTACACC+TGG 0.624375 6.3:+1424000 None:intergenic
ATCAATGATACCAAGAATGG+TGG 0.631783 6.3:-1424609 MS.gene032601:intron
GCTATCAATGATACCAAGAA+TGG 0.640005 6.3:-1424612 MS.gene032601:CDS
ATCACAAAAGTACTCAACAA+AGG 0.644517 6.3:-1424117 MS.gene032601:CDS
AGGGCTGGGATCAAAGGCAA+AGG 0.658426 6.3:+1424653 None:intergenic
GGAAACACGTCAAATCCACT+TGG 0.662851 6.3:-1424333 MS.gene032601:CDS
TCTCACCAAAGCTTTCCAAG+TGG 0.665947 6.3:-1423938 MS.gene032601:CDS
ACTTGGTTCAAAAGTGACAC+CGG 0.669513 6.3:-1424316 MS.gene032601:CDS
GCTCTAGGGTGAGTATGTGG+AGG 0.673911 6.3:+1424213 None:intergenic
CAACACGATAAGAATCTCAG+TGG 0.757588 6.3:+1424191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATATACGTATATAAG+TGG - chr6.3:1424121-1424140 MS.gene032601:CDS 15.0%
!! TACGTATATATTAATGTTGT+CGG + chr6.3:1424115-1424134 None:intergenic 20.0%
! ACAATCTTCAAAAACAATTC+TGG - chr6.3:1424690-1424709 MS.gene032601:CDS 25.0%
! ACTATGATACAAAAGTTTCA+CGG - chr6.3:1424075-1424094 MS.gene032601:CDS 25.0%
! ATTCACTTTCAATTGAATGT+TGG - chr6.3:1424524-1424543 MS.gene032601:intron 25.0%
! CAATCTTCAAAAACAATTCT+GGG - chr6.3:1424691-1424710 MS.gene032601:CDS 25.0%
! TCATAGTTCAATCAGTTTAA+CGG + chr6.3:1424062-1424081 None:intergenic 25.0%
! TTCACTTTCAATTGAATGTT+GGG - chr6.3:1424525-1424544 MS.gene032601:intron 25.0%
!!! AGAACTTCTGAAGAAATTTT+TGG + chr6.3:1424635-1424654 None:intergenic 25.0%
ACTATTGCTAATGCTGTATT+TGG - chr6.3:1424602-1424621 MS.gene032601:intron 30.0%
AGTATCTCATTAACTGTAAC+CGG + chr6.3:1424296-1424315 None:intergenic 30.0%
ATACTAGGACTAAACACTTT+AGG - chr6.3:1424311-1424330 MS.gene032601:CDS 30.0%
CATAGTTCAATCAGTTTAAC+GGG + chr6.3:1424061-1424080 None:intergenic 30.0%
CATTCAATTGAAAGTGAATG+AGG + chr6.3:1424523-1424542 None:intergenic 30.0%
CTATTGCTAATGCTGTATTT+GGG - chr6.3:1424603-1424622 MS.gene032601:intron 30.0%
GTTACAGTTAATGAGATACT+AGG - chr6.3:1424296-1424315 MS.gene032601:CDS 30.0%
TTTCAATTGAATGTTGGGTA+TGG - chr6.3:1424530-1424549 MS.gene032601:intron 30.0%
!! ATCACAAAAGTACTCAACAA+AGG - chr6.3:1424473-1424492 MS.gene032601:intron 30.0%
AGTATACATACCACCATTCT+TGG + chr6.3:1423994-1424013 None:intergenic 35.0%
ATCAATGATACCAAGAATGG+TGG - chr6.3:1423981-1424000 MS.gene032601:CDS 35.0%
GCTATCAATGATACCAAGAA+TGG - chr6.3:1423978-1423997 MS.gene032601:CDS 35.0%
TCTTCAAAAACAATTCTGGG+TGG - chr6.3:1424694-1424713 MS.gene032601:CDS 35.0%
TTAGCAATAGTGATTACACC+TGG + chr6.3:1424593-1424612 None:intergenic 35.0%
TTCTTCTACTCAGTGAAAGA+AGG - chr6.3:1424236-1424255 MS.gene032601:CDS 35.0%
! CCACACAAAAGTCTTGTAAA+GGG + chr6.3:1423959-1423978 None:intergenic 35.0%
! TAGTGATTACACCTGGATTT+TGG + chr6.3:1424586-1424605 None:intergenic 35.0%
! TGAGTACTTTTGTGATGAGA+CGG + chr6.3:1424469-1424488 None:intergenic 35.0%
! TGTTGTGCAGTTTTTGTGAA+TGG - chr6.3:1424173-1424192 MS.gene032601:CDS 35.0%
ACAAGATGCTAAAGCCAAGA+AGG + chr6.3:1423916-1423935 None:intergenic 40.0%
ACTTGGTTCAAAAGTGACAC+CGG - chr6.3:1424274-1424293 MS.gene032601:CDS 40.0%
ATAAGAATCTCAGTGGCTCT+AGG + chr6.3:1424395-1424414 None:intergenic 40.0%
ATTGTCCACTTGGAAAGCTT+TGG + chr6.3:1424660-1424679 None:intergenic 40.0%
CAACACGATAAGAATCTCAG+TGG + chr6.3:1424402-1424421 None:intergenic 40.0%
CACTGAGATTCTTATCGTGT+TGG - chr6.3:1424400-1424419 MS.gene032601:CDS 40.0%
CCAAGTGGACAATAACATAG+TGG - chr6.3:1424667-1424686 MS.gene032601:CDS 40.0%
CCACTATGTTATTGTCCACT+TGG + chr6.3:1424670-1424689 None:intergenic 40.0%
GAGATTCTTATCGTGTTGGA+GGG - chr6.3:1424404-1424423 MS.gene032601:CDS 40.0%
GATGTCTTCGTGTTTCCAAT+TGG - chr6.3:1424497-1424516 MS.gene032601:intron 40.0%
TCATTTGCAGTAGCAAGCTT+TGG + chr6.3:1424215-1424234 None:intergenic 40.0%
TGAAAGTGAATGAGGCCAAT+TGG + chr6.3:1424515-1424534 None:intergenic 40.0%
TGAGATTCTTATCGTGTTGG+AGG - chr6.3:1424403-1424422 MS.gene032601:CDS 40.0%
TGTGAATGGCAAATTCTGCA+AGG - chr6.3:1424187-1424206 MS.gene032601:CDS 40.0%
! ACAAAAGTCTTGTAAAGGGC+TGG + chr6.3:1423955-1423974 None:intergenic 40.0%
! CAAAAGTCTTGTAAAGGGCT+GGG + chr6.3:1423954-1423973 None:intergenic 40.0%
! CCCTTTACAAGACTTTTGTG+TGG - chr6.3:1423956-1423975 MS.gene032601:CDS 40.0%
! GCCACACAAAAGTCTTGTAA+AGG + chr6.3:1423960-1423979 None:intergenic 40.0%
! TAAGAATCTCAGTGGCTCTA+GGG + chr6.3:1424394-1424413 None:intergenic 40.0%
! TTTGTGATGAGACGGTTTTC+TGG + chr6.3:1424461-1424480 None:intergenic 40.0%
CTTGTTTGTGACAGCCTTCT+TGG - chr6.3:1423899-1423918 MS.gene032601:CDS 45.0%
GGAAACACGTCAAATCCACT+TGG - chr6.3:1424257-1424276 MS.gene032601:CDS 45.0%
GGAAATGCAGTTGTCATTGC+TGG - chr6.3:1424551-1424570 MS.gene032601:intron 45.0%
TCTCACCAAAGCTTTCCAAG+TGG - chr6.3:1424652-1424671 MS.gene032601:CDS 45.0%
TTGTAAAGGGCTGGGATCAA+AGG + chr6.3:1423946-1423965 None:intergenic 45.0%
!! TGGAGGGCACTCTTTATGTT+GGG - chr6.3:1424420-1424439 MS.gene032601:intron 45.0%
!! TTGGAGGGCACTCTTTATGT+TGG - chr6.3:1424419-1424438 MS.gene032601:intron 45.0%
!!! GGTGTCACTTTTGAACCAAG+TGG + chr6.3:1424275-1424294 None:intergenic 45.0%
GGACTTAGCAGCCAAAATCC+AGG - chr6.3:1424572-1424591 MS.gene032601:intron 50.0%
!! TCGCATTGACTTCGCTGCTA+GGG - chr6.3:1424346-1424365 MS.gene032601:CDS 50.0%
AGGGCTGGGATCAAAGGCAA+AGG + chr6.3:1423940-1423959 None:intergenic 55.0%
!! CGCATTGACTTCGCTGCTAG+GGG - chr6.3:1424347-1424366 MS.gene032601:CDS 55.0%
!! CTCGCATTGACTTCGCTGCT+AGG - chr6.3:1424345-1424364 MS.gene032601:CDS 55.0%
!! GCTCTAGGGTGAGTATGTGG+AGG + chr6.3:1424380-1424399 None:intergenic 55.0%
!! GTGGCTCTAGGGTGAGTATG+TGG + chr6.3:1424383-1424402 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 1423885 1424727 1423885 ID=MS.gene032601
chr6.3 mRNA 1423885 1424727 1423885 ID=MS.gene032601.t1;Parent=MS.gene032601
chr6.3 exon 1424610 1424727 1424610 ID=MS.gene032601.t1.exon1;Parent=MS.gene032601.t1
chr6.3 CDS 1424610 1424727 1424610 ID=cds.MS.gene032601.t1;Parent=MS.gene032601.t1
chr6.3 exon 1423885 1424429 1423885 ID=MS.gene032601.t1.exon2;Parent=MS.gene032601.t1
chr6.3 CDS 1423885 1424429 1423885 ID=cds.MS.gene032601.t1;Parent=MS.gene032601.t1
Gene Sequence

>MS.gene032601

ATGAAGACTTCTTACTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCCAGCCCTTTACAAGACTTTTGTGTGGCTATCAATGATACCAAGAATGGTGGTATGTATACTTTTTTACACTTATTTATTTATTCATCTTTACTCTTTTGATTCAACCCGTTAAACTGATTGAACTATGATACAAAAGTTTCACGGATTCAATCTCATGTCCGACAACATTAATATATACGTATATAAGTGGAGCATATTATTTAATTACATGATAAAAATTGTTGTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACTGCAAATGATTTCTTCTACTCAGTGAAAGAAGGAAACACGTCAAATCCACTTGGTTCAAAAGTGACACCGGTTACAGTTAATGAGATACTAGGACTAAACACTTTAGGTATCTCTCTTGCTCGCATTGACTTCGCTGCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGCACTCTTTATGTTGGGTTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTCTTCGTGTTTCCAATTGGCCTCATTCACTTTCAATTGAATGTTGGGTATGGAAATGCAGTTGTCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTAATCACTATTGCTAATGCTGTATTTGGGTCTAATCCAAAAATTTCTTCAGAAGTTCTCACCAAAGCTTTCCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTCTGGGTGGACAACAACTAG
Protein sequence

>MS.gene032601.t1

MKTSYLFVTAFLALASCAFAFDPSPLQDFCVAINDTKNGVFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARIDFAARGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVVIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN