Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24420.t1 | XP_003589171.1 | 95.5 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 7.40E-268 | 932.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24420.t1 | P19515 | 29.1 | 175 | 95 | 6 | 186 | 358 | 156 | 303 | 1.4e-09 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24420.t1 | G7I3I7 | 95.5 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 5.3e-268 | 932.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene24420 | -0.839426 | 1.60E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene24420 | -0.822961 | 1.79E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene24420 | -0.841853 | 3.69E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene24420 | -0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene24420 | -0.82482 | 6.56E-54 | -1.69E-46 |
| MS.gene049402 | MS.gene24420 | 0.842388 | 2.67E-58 | -1.69E-46 |
| MS.gene049611 | MS.gene24420 | 0.828654 | 7.97E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene24420 | -0.808875 | 2.50E-50 | -1.69E-46 |
| MS.gene049634 | MS.gene24420 | 0.840878 | 6.67E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene24420 | -0.832253 | 1.05E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene24420 | -0.8439 | 1.05E-58 | -1.69E-46 |
| MS.gene050170 | MS.gene24420 | -0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene24420 | -0.803741 | 3.02E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene24420 | -0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene24420 | -0.834677 | 2.61E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene24420 | -0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene24420 | -0.857025 | 2.16E-62 | -1.69E-46 |
| MS.gene050518 | MS.gene24420 | -0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene24420 | -0.82903 | 6.46E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene24420 | -0.852608 | 4.13E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene24420 | -0.823893 | 1.08E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene24420 | -0.816889 | 4.38E-52 | -1.69E-46 |
| MS.gene050720 | MS.gene24420 | 0.811271 | 7.61E-51 | -1.69E-46 |
| MS.gene05079 | MS.gene24420 | 0.821079 | 4.88E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene24420 | -0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene24420 | -0.858707 | 6.85E-63 | -1.69E-46 |
| MS.gene050871 | MS.gene24420 | -0.85598 | 4.38E-62 | -1.69E-46 |
| MS.gene050904 | MS.gene24420 | -0.846939 | 1.58E-59 | -1.69E-46 |
| MS.gene050986 | MS.gene24420 | -0.818069 | 2.38E-52 | -1.69E-46 |
| MS.gene051044 | MS.gene24420 | 0.815811 | 7.63E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene24420 | 0.824939 | 6.15E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene24420 | 0.823835 | 1.12E-53 | -1.69E-46 |
| MS.gene051138 | MS.gene24420 | 0.870183 | 1.77E-66 | -1.69E-46 |
| MS.gene051268 | MS.gene24420 | -0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene24420 | -0.836995 | 6.75E-57 | -1.69E-46 |
| MS.gene051364 | MS.gene24420 | 0.828262 | 9.91E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene24420 | 0.814179 | 1.76E-51 | -1.69E-46 |
| MS.gene051651 | MS.gene24420 | 0.824371 | 8.37E-54 | -1.69E-46 |
| MS.gene051863 | MS.gene24420 | 0.802935 | 4.43E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene24420 | 0.809004 | 2.34E-50 | -1.69E-46 |
| MS.gene051973 | MS.gene24420 | 0.83259 | 8.67E-56 | -1.69E-46 |
| MS.gene052015 | MS.gene24420 | 0.818648 | 1.76E-52 | -1.69E-46 |
| MS.gene052129 | MS.gene24420 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene24420 | -0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene24420 | -0.806865 | 6.68E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene24420 | -0.811632 | 6.35E-51 | -1.69E-46 |
| MS.gene052494 | MS.gene24420 | 0.822761 | 1.99E-53 | -1.69E-46 |
| MS.gene052606 | MS.gene24420 | 0.838364 | 3.00E-57 | -1.69E-46 |
| MS.gene052802 | MS.gene24420 | 0.833468 | 5.24E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene24420 | -0.802533 | 5.36E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene24420 | -0.824707 | 6.97E-54 | -1.69E-46 |
| MS.gene053097 | MS.gene24420 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene24420 | -0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene24420 | 0.840896 | 6.60E-58 | -1.69E-46 |
| MS.gene053421 | MS.gene24420 | 0.828253 | 9.97E-55 | -1.69E-46 |
| MS.gene053479 | MS.gene24420 | -0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene24420 | -0.801379 | 9.26E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene24420 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene24420 | 0.831246 | 1.86E-55 | -1.69E-46 |
| MS.gene054707 | MS.gene24420 | 0.812848 | 3.45E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene24420 | -0.863437 | 2.49E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene24420 | -0.814556 | 1.45E-51 | -1.69E-46 |
| MS.gene055202 | MS.gene24420 | 0.818756 | 1.66E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene24420 | -0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene24420 | -0.854031 | 1.61E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene24420 | -0.850731 | 1.41E-60 | -1.69E-46 |
| MS.gene055729 | MS.gene24420 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene055731 | MS.gene24420 | 0.80873 | 2.68E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene24420 | -0.853517 | 2.27E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene24420 | -0.821111 | 4.80E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene24420 | -0.851939 | 6.40E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene24420 | -0.858796 | 6.44E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene24420 | -0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene056198 | MS.gene24420 | 0.803367 | 3.61E-49 | -1.69E-46 |
| MS.gene056224 | MS.gene24420 | 0.82323 | 1.55E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene24420 | -0.817434 | 3.30E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene24420 | -0.846231 | 2.47E-59 | -1.69E-46 |
| MS.gene056510 | MS.gene24420 | -0.81464 | 1.39E-51 | -1.69E-46 |
| MS.gene056550 | MS.gene24420 | 0.811201 | 7.88E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene24420 | -0.810481 | 1.13E-50 | -1.69E-46 |
| MS.gene056678 | MS.gene24420 | 0.813004 | 3.19E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene24420 | -0.812644 | 3.82E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene24420 | 0.808721 | 2.70E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene24420 | 0.842744 | 2.14E-58 | -1.69E-46 |
| MS.gene056857 | MS.gene24420 | 0.805501 | 1.29E-49 | -1.69E-46 |
| MS.gene056988 | MS.gene24420 | 0.827596 | 1.43E-54 | -1.69E-46 |
| MS.gene057014 | MS.gene24420 | 0.825552 | 4.41E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene24420 | -0.806722 | 7.16E-50 | -1.69E-46 |
| MS.gene057717 | MS.gene24420 | 0.808941 | 2.42E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene24420 | 0.843057 | 1.77E-58 | -1.69E-46 |
| MS.gene057831 | MS.gene24420 | -0.827241 | 1.74E-54 | -1.69E-46 |
| MS.gene058068 | MS.gene24420 | 0.803562 | 3.29E-49 | -1.69E-46 |
| MS.gene058111 | MS.gene24420 | 0.807009 | 6.23E-50 | -1.69E-46 |
| MS.gene058117 | MS.gene24420 | 0.820179 | 7.86E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene24420 | 0.849646 | 2.83E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene24420 | 0.836128 | 1.12E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene24420 | 0.853717 | 1.99E-61 | -1.69E-46 |
| MS.gene058334 | MS.gene24420 | 0.838239 | 3.24E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene24420 | -0.827452 | 1.55E-54 | -1.69E-46 |
| MS.gene058418 | MS.gene24420 | 0.80632 | 8.71E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene24420 | -0.811177 | 7.98E-51 | -1.69E-46 |
| MS.gene058452 | MS.gene24420 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene24420 | -0.832379 | 9.78E-56 | -1.69E-46 |
| MS.gene058603 | MS.gene24420 | 0.870562 | 1.33E-66 | -1.69E-46 |
| MS.gene058773 | MS.gene24420 | -0.834596 | 2.74E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene24420 | -0.8135 | 2.48E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene24420 | -0.84739 | 1.19E-59 | -1.69E-46 |
| MS.gene059023 | MS.gene24420 | -0.845426 | 4.09E-59 | -1.69E-46 |
| MS.gene059102 | MS.gene24420 | 0.813719 | 2.22E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene24420 | -0.842833 | 2.03E-58 | -1.69E-46 |
| MS.gene059479 | MS.gene24420 | 0.803538 | 3.32E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene24420 | 0.826617 | 2.46E-54 | -1.69E-46 |
| MS.gene05960 | MS.gene24420 | 0.839997 | 1.13E-57 | -1.69E-46 |
| MS.gene059677 | MS.gene24420 | -0.841258 | 5.30E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene24420 | -0.809994 | 1.44E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene24420 | -0.832864 | 7.41E-56 | -1.69E-46 |
| MS.gene059916 | MS.gene24420 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene24420 | -0.82251 | 2.28E-53 | -1.69E-46 |
| MS.gene060405 | MS.gene24420 | 0.800239 | 1.58E-48 | -1.69E-46 |
| MS.gene060595 | MS.gene24420 | 0.802279 | 6.05E-49 | -1.69E-46 |
| MS.gene060602 | MS.gene24420 | 0.813493 | 2.49E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene24420 | -0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene24420 | -0.867185 | 1.65E-65 | -1.69E-46 |
| MS.gene06077 | MS.gene24420 | -0.850021 | 2.22E-60 | -1.69E-46 |
| MS.gene060823 | MS.gene24420 | 0.817258 | 3.62E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene24420 | -0.835087 | 2.06E-56 | -1.69E-46 |
| MS.gene061044 | MS.gene24420 | 0.826675 | 2.38E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene24420 | -0.802742 | 4.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24420.t1 | MTR_1g019270 | 95.541 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 0.0 | 932 |
| MS.gene24420.t1 | MTR_5g017260 | 49.342 | 456 | 228 | 3 | 11 | 464 | 13 | 467 | 2.53e-162 | 467 |
| MS.gene24420.t1 | MTR_3g086880 | 43.074 | 462 | 213 | 7 | 11 | 457 | 13 | 439 | 3.91e-121 | 361 |
| MS.gene24420.t1 | MTR_7g117505 | 40.702 | 484 | 249 | 5 | 11 | 457 | 8 | 490 | 4.33e-121 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24420.t1 | AT5G42930 | 54.428 | 463 | 202 | 4 | 10 | 464 | 6 | 467 | 0.0 | 537 |
| MS.gene24420.t1 | AT1G56630 | 53.863 | 466 | 196 | 6 | 10 | 457 | 6 | 470 | 1.39e-176 | 504 |
| MS.gene24420.t1 | AT1G45201 | 50.216 | 462 | 222 | 5 | 3 | 459 | 4 | 462 | 7.24e-160 | 461 |
| MS.gene24420.t1 | AT1G45201 | 50.216 | 462 | 222 | 5 | 3 | 459 | 29 | 487 | 1.39e-159 | 461 |
| MS.gene24420.t1 | AT5G42930 | 53.543 | 381 | 169 | 3 | 10 | 383 | 6 | 385 | 4.61e-150 | 434 |
| MS.gene24420.t1 | AT5G67050 | 47.033 | 455 | 227 | 7 | 11 | 456 | 13 | 462 | 1.10e-147 | 430 |
| MS.gene24420.t1 | AT1G45201 | 49.482 | 386 | 187 | 5 | 3 | 383 | 4 | 386 | 1.22e-126 | 373 |
| MS.gene24420.t1 | AT3G14360 | 38.076 | 499 | 266 | 7 | 2 | 457 | 10 | 508 | 1.46e-122 | 367 |
| MS.gene24420.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.28e-11 | 65.1 |
| MS.gene24420.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.80e-11 | 65.5 |
| MS.gene24420.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.80e-11 | 65.5 |
| MS.gene24420.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 110 | 250 | 3.06e-11 | 65.5 |
| MS.gene24420.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 110 | 250 | 3.06e-11 | 65.5 |
Find 107 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCCTTCTTGAAAATTAT+TGG | 0.135024 | 1.1:-3793277 | MS.gene24420:CDS |
| CTCTTCTTCAACTTTCTTAA+AGG | 0.156900 | 1.1:-3793199 | MS.gene24420:intron |
| GCAATGCAGTTAGAAATAAT+TGG | 0.189881 | 1.1:-3792868 | MS.gene24420:CDS |
| CAAACTGCGTTTAAGATCTT+TGG | 0.213583 | 1.1:+3790460 | None:intergenic |
| GATGCAAAATTCATATTAAC+AGG | 0.242406 | 1.1:-3790931 | MS.gene24420:CDS |
| AGAACTATTTCTCTTTGTTC+TGG | 0.244149 | 1.1:-3790489 | MS.gene24420:CDS |
| CAAAGATCTTAAACGCAGTT+TGG | 0.279408 | 1.1:-3790459 | MS.gene24420:CDS |
| AGAAATGTTGAAGGAAAATA+AGG | 0.289378 | 1.1:-3790953 | MS.gene24420:CDS |
| TTAGAAGGTGTTTATACATT+TGG | 0.293212 | 1.1:-3790829 | MS.gene24420:CDS |
| CTTGTTGGATTGATAATTCC+AGG | 0.293883 | 1.1:-3790358 | MS.gene24420:CDS |
| CATATTAACAGGGCATAGTT+TGG | 0.299211 | 1.1:-3790920 | MS.gene24420:CDS |
| TTCCTTCTACCATTTGTTAT+AGG | 0.311769 | 1.1:-3790421 | MS.gene24420:CDS |
| ATATGTTTACTCCAATGATA+TGG | 0.321173 | 1.1:-3790728 | MS.gene24420:CDS |
| TAGAAGGTGTTTATACATTT+GGG | 0.324429 | 1.1:-3790828 | MS.gene24420:CDS |
| AAAGAGAAATAGTTCTTGTT+TGG | 0.329154 | 1.1:+3790496 | None:intergenic |
| AGAGTTGGAGACGAGAAGTT+TGG | 0.331097 | 1.1:-3790799 | MS.gene24420:CDS |
| CAATGCAGTTAGAAATAATT+GGG | 0.335327 | 1.1:-3792867 | MS.gene24420:CDS |
| CTTCTTTCATCAATTTCTTT+AGG | 0.343200 | 1.1:+3791018 | None:intergenic |
| TTGATTGTGGTTGCATTTAG+AGG | 0.348509 | 1.1:-3791168 | MS.gene24420:CDS |
| ATCTCCATGTATTTGTTGTT+CGG | 0.358677 | 1.1:+3793477 | None:intergenic |
| ATGGCATTGTTCAGGCTTGT+TGG | 0.361487 | 1.1:-3790373 | MS.gene24420:CDS |
| ATTGGTTCATGGCATTGTTC+AGG | 0.361946 | 1.1:-3790381 | MS.gene24420:CDS |
| GAACTATTTCTCTTTGTTCT+GGG | 0.395273 | 1.1:-3790488 | MS.gene24420:CDS |
| GGTGGGTTCATGAAAGCTTT+GGG | 0.397170 | 1.1:-3791063 | MS.gene24420:CDS |
| GCAGTTTGGGAGGTGATTAG+AGG | 0.398304 | 1.1:-3790445 | MS.gene24420:CDS |
| AAAGATCTTAAACGCAGTTT+GGG | 0.404490 | 1.1:-3790458 | MS.gene24420:CDS |
| TTCTTGCCTCAAGTCCTTGT+GGG | 0.405312 | 1.1:+3793362 | None:intergenic |
| TCAAGTAATGGAGGGCTCAT+TGG | 0.410377 | 1.1:-3793223 | MS.gene24420:CDS |
| GTCGTCGGCGGAGTTCTTAT+CGG | 0.410892 | 1.1:-3793014 | MS.gene24420:CDS |
| AAGAGGGATTTGTCATCATA+AGG | 0.413128 | 1.1:+3790694 | None:intergenic |
| TACCTATAACAAATGGTAGA+AGG | 0.413520 | 1.1:+3790419 | None:intergenic |
| TTGGAGACATGTTGGAGTCT+TGG | 0.414649 | 1.1:-3793258 | MS.gene24420:CDS |
| ATATTAACAGGGCATAGTTT+GGG | 0.421807 | 1.1:-3790919 | MS.gene24420:CDS |
| GTAAAGAGTATAAACAGAAT+TGG | 0.425012 | 1.1:-3790399 | MS.gene24420:CDS |
| AATGCAACCACAATCAAGTT+TGG | 0.425076 | 1.1:+3791174 | None:intergenic |
| CTTAATTGTTTATCAAGTAA+TGG | 0.429403 | 1.1:-3793235 | MS.gene24420:CDS |
| CCGTTGTTAGATCAGTTAGA+AGG | 0.435975 | 1.1:-3790844 | MS.gene24420:CDS |
| AACTTCTCGTCTCCAACTCT+TGG | 0.437079 | 1.1:+3790802 | None:intergenic |
| TTCCATTGCACAGCGTCAAA+TGG | 0.446017 | 1.1:+3791138 | None:intergenic |
| CCATGCATCTTACCCACGTT+TGG | 0.451550 | 1.1:+3791084 | None:intergenic |
| GCATAGACATTAGTCATCCT+TGG | 0.456552 | 1.1:+3790255 | None:intergenic |
| CAAGAAAATTTCGACAAAGA+TGG | 0.458817 | 1.1:-3793345 | MS.gene24420:CDS |
| TGGTGGGTTCATGAAAGCTT+TGG | 0.466070 | 1.1:-3791064 | MS.gene24420:CDS |
| GTGAAATGAGCTGGTAGTCC+TGG | 0.467415 | 1.1:+3790340 | None:intergenic |
| TACTCTTTACCTATAACAAA+TGG | 0.472622 | 1.1:+3790412 | None:intergenic |
| GAAAATTATTGGAGACATGT+TGG | 0.474385 | 1.1:-3793266 | MS.gene24420:CDS |
| GTATAAACAGAATTGGTTCA+TGG | 0.475060 | 1.1:-3790392 | MS.gene24420:CDS |
| TTGTCATCATAAGGGATCCT+AGG | 0.481249 | 1.1:+3790703 | None:intergenic |
| GCATAGTTTGGGTGGAGCAT+TGG | 0.487894 | 1.1:-3790908 | MS.gene24420:CDS |
| GATCCTAGGAACCATATCAT+TGG | 0.488876 | 1.1:+3790717 | None:intergenic |
| CGTAGTAAGCATATTGATGC+TGG | 0.489114 | 1.1:+3790995 | None:intergenic |
| AAAGCAAGTGTTGTGGAACT+AGG | 0.494529 | 1.1:-3793433 | MS.gene24420:CDS |
| ACTCCAATGATATGGTTCCT+AGG | 0.497236 | 1.1:-3790720 | MS.gene24420:CDS |
| ATAAGGATGTAAAGTACAAA+GGG | 0.499364 | 1.1:-3792943 | MS.gene24420:CDS |
| GCAACTGAGAGAAATGTTGA+AGG | 0.501125 | 1.1:-3790962 | MS.gene24420:CDS |
| GTAGATTTCATACCTGCCCT+TGG | 0.504655 | 1.1:+3790629 | None:intergenic |
| CTCCATTTGACGCTGTGCAA+TGG | 0.504884 | 1.1:-3791140 | MS.gene24420:CDS |
| GCGGAGTTCTTATCGGTGGT+TGG | 0.509997 | 1.1:-3793007 | MS.gene24420:CDS |
| AGCTTCATTGATTGCCCACA+AGG | 0.512388 | 1.1:-3793376 | MS.gene24420:CDS |
| AGAGGGATTTGTCATCATAA+GGG | 0.519798 | 1.1:+3790695 | None:intergenic |
| CAATGAAGCTTCTATTTGCT+AGG | 0.520884 | 1.1:+3793389 | None:intergenic |
| CAAAGGGTTACTATCTATCA+TGG | 0.525614 | 1.1:-3792927 | MS.gene24420:CDS |
| AATCAAGTTTGGCTCAGACT+TGG | 0.525772 | 1.1:+3791185 | None:intergenic |
| ACATTTGGGCAACCAAGAGT+TGG | 0.528038 | 1.1:-3790814 | MS.gene24420:CDS |
| AAACAGACGTTGATATCTCC+TGG | 0.531593 | 1.1:-3791116 | MS.gene24420:CDS |
| TTATGTCAATGCTACCCGAC+TGG | 0.531631 | 1.1:-3790311 | MS.gene24420:CDS |
| CATAAGGATGTAAAGTACAA+AGG | 0.532579 | 1.1:-3792944 | MS.gene24420:CDS |
| CAACAGCTTGTACCAAGGGC+AGG | 0.538318 | 1.1:-3790641 | MS.gene24420:intron |
| GACTGAAGTGCTTAAAGAAG+AGG | 0.539336 | 1.1:+3790677 | None:intergenic |
| TTTCTTGCCTCAAGTCCTTG+TGG | 0.545498 | 1.1:+3793361 | None:intergenic |
| CACGTTTGGTAGGTCATACC+AGG | 0.546792 | 1.1:+3791098 | None:intergenic |
| AATTGTTTATCAAGTAATGG+AGG | 0.560190 | 1.1:-3793232 | MS.gene24420:CDS |
| TGAAATCCAGATTCTGGAGG+AGG | 0.561254 | 1.1:-3790521 | MS.gene24420:intron |
| TAATCTGCAGTGAAATGAGC+TGG | 0.562925 | 1.1:+3790331 | None:intergenic |
| ATTGTTTATCAAGTAATGGA+GGG | 0.563370 | 1.1:-3793231 | MS.gene24420:CDS |
| CCTAGAGCTTCTAATTTCCA+AGG | 0.565181 | 1.1:-3790272 | MS.gene24420:CDS |
| CTGGTATGACCTACCAAACG+TGG | 0.574732 | 1.1:-3791097 | MS.gene24420:CDS |
| CCTTGGAAATTAGAAGCTCT+AGG | 0.576959 | 1.1:+3790272 | None:intergenic |
| TGATTGCCCACAAGGACTTG+AGG | 0.576965 | 1.1:-3793368 | MS.gene24420:CDS |
| TATGTCAATGCTACCCGACT+GGG | 0.579643 | 1.1:-3790310 | MS.gene24420:CDS |
| CTAGGTTTGATGAAAACAAG+AGG | 0.580005 | 1.1:+3793407 | None:intergenic |
| GATCTTAAACGCAGTTTGGG+AGG | 0.582036 | 1.1:-3790455 | MS.gene24420:CDS |
| ACTGAAGTGCTTAAAGAAGA+GGG | 0.583297 | 1.1:+3790678 | None:intergenic |
| GCATCTTACCCACGTTTGGT+AGG | 0.584299 | 1.1:+3791088 | None:intergenic |
| CTAAATCAACTCTTGTGTCA+AGG | 0.587660 | 1.1:+3792981 | None:intergenic |
| ATGGAGATTATCTATTTCTG+AGG | 0.588396 | 1.1:-3793462 | MS.gene24420:CDS |
| GACTATTAGAGAACGGTGGA+TGG | 0.590336 | 1.1:-3791041 | MS.gene24420:CDS |
| GGTTCCGAACAACAAATACA+TGG | 0.590798 | 1.1:-3793481 | MS.gene24420:CDS |
| TTTGTCTAAGAATCCCAGTC+GGG | 0.593613 | 1.1:+3790297 | None:intergenic |
| TTAACAGGGCATAGTTTGGG+TGG | 0.601661 | 1.1:-3790916 | MS.gene24420:CDS |
| GTCGGCGGAGTTCTTATCGG+TGG | 0.625309 | 1.1:-3793011 | MS.gene24420:CDS |
| CCAAACGTGGGTAAGATGCA+TGG | 0.629496 | 1.1:-3791084 | MS.gene24420:CDS |
| GCTTTGGGACTATTAGAGAA+CGG | 0.641017 | 1.1:-3791048 | MS.gene24420:CDS |
| ACGTGGGTAAGATGCATGGT+GGG | 0.641063 | 1.1:-3791080 | MS.gene24420:CDS |
| GTCTGAGCCAAACTTGATTG+TGG | 0.648999 | 1.1:-3791181 | MS.gene24420:CDS |
| GTTTGTCTAAGAATCCCAGT+CGG | 0.657643 | 1.1:+3790296 | None:intergenic |
| TATTGAAATCCAGATTCTGG+AGG | 0.663481 | 1.1:-3790524 | MS.gene24420:intron |
| AATGCAGTTAGAAATAATTG+GGG | 0.668177 | 1.1:-3792866 | MS.gene24420:CDS |
| AACGTGGGTAAGATGCATGG+TGG | 0.670345 | 1.1:-3791081 | MS.gene24420:CDS |
| AATCAACTCTTGTGTCAAGG+TGG | 0.671807 | 1.1:+3792984 | None:intergenic |
| CCTTCTAACTGATCTAACAA+CGG | 0.677853 | 1.1:+3790844 | None:intergenic |
| GATAACACCGGAAAAGTCGT+CGG | 0.682426 | 1.1:-3793029 | MS.gene24420:CDS |
| TGCAGGAGAGGTGATAACAC+CGG | 0.684829 | 1.1:-3793041 | MS.gene24420:intron |
| TTGGGACTATTAGAGAACGG+TGG | 0.689567 | 1.1:-3791045 | MS.gene24420:CDS |
| ATGCAAAATTCATATTAACA+GGG | 0.695453 | 1.1:-3790930 | MS.gene24420:CDS |
| TGGTATGACCTACCAAACGT+GGG | 0.704433 | 1.1:-3791096 | MS.gene24420:CDS |
| AACACCGGAAAAGTCGTCGG+CGG | 0.722840 | 1.1:-3793026 | MS.gene24420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGATAAATTAAAATATA+AGG | + | chr1.1:3792150-3792169 | None:intergenic | 10.0% |
| !!! | ATTTAATAGTTTTATGTTAT+GGG | + | chr1.1:3791956-3791975 | None:intergenic | 10.0% |
| !!! | TAATAAGTTTAATTTTTTTG+AGG | - | chr1.1:3791173-3791192 | MS.gene24420:CDS | 10.0% |
| !!! | TATTTAATAGTTTTATGTTA+TGG | + | chr1.1:3791957-3791976 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTATCCTTAAT+CGG | - | chr1.1:3792152-3792171 | MS.gene24420:intron | 10.0% |
| !! | AAGGAAAAATTTGATTATAT+AGG | - | chr1.1:3791297-3791316 | MS.gene24420:intron | 15.0% |
| !! | ATTTACTCTAAATAAAACTA+TGG | + | chr1.1:3790969-3790988 | None:intergenic | 15.0% |
| !! | ATTTCTCTAATTTAAATGAA+GGG | - | chr1.1:3792320-3792339 | MS.gene24420:intron | 15.0% |
| !!! | AATTATATATTGCATTTTGA+AGG | - | chr1.1:3791278-3791297 | MS.gene24420:intron | 15.0% |
| !!! | ATTTTAATTTATCCTTAATC+GGG | - | chr1.1:3792153-3792172 | MS.gene24420:intron | 15.0% |
| !!! | ATTTTATCATTTGAAAATCA+TGG | + | chr1.1:3792422-3792441 | None:intergenic | 15.0% |
| !!! | GATTTTCAAATGATAAAATT+GGG | - | chr1.1:3792423-3792442 | MS.gene24420:intron | 15.0% |
| !!! | GTTTACATGAATTTAAATTT+TGG | - | chr1.1:3790681-3790700 | MS.gene24420:CDS | 15.0% |
| !!! | TGATTTTCAAATGATAAAAT+TGG | - | chr1.1:3792422-3792441 | MS.gene24420:intron | 15.0% |
| !!! | TTATAATTTTTTTATGTCGA+AGG | - | chr1.1:3791749-3791768 | MS.gene24420:intron | 15.0% |
| !! | AGACAAAAATATTCATCATA+AGG | - | chr1.1:3790788-3790807 | MS.gene24420:CDS | 20.0% |
| !! | ATGCAAAATTCATATTAACA+GGG | - | chr1.1:3792818-3792837 | MS.gene24420:intron | 20.0% |
| !! | CATTTCTCTAATTTAAATGA+AGG | - | chr1.1:3792319-3792338 | MS.gene24420:intron | 20.0% |
| !! | CTTAATTGTTTATCAAGTAA+TGG | - | chr1.1:3790513-3790532 | MS.gene24420:CDS | 20.0% |
| !! | GTATATCTTACAAATTATGA+AGG | + | chr1.1:3791100-3791119 | None:intergenic | 20.0% |
| !! | GTGTTTATAATATTATTGAC+AGG | - | chr1.1:3791978-3791997 | MS.gene24420:intron | 20.0% |
| !! | TCAATATATAACACTTATTG+TGG | - | chr1.1:3791801-3791820 | MS.gene24420:intron | 20.0% |
| !!! | AAAATATGGCATTTTTTTAG+TGG | - | chr1.1:3791776-3791795 | MS.gene24420:intron | 20.0% |
| !!! | GGAAAAATTCTAAAATTATG+AGG | + | chr1.1:3791536-3791555 | None:intergenic | 20.0% |
| !!! | TACATGAATTTAAATTTTGG+TGG | - | chr1.1:3790684-3790703 | MS.gene24420:CDS | 20.0% |
| ! | AAAGAGAAATAGTTCTTGTT+TGG | + | chr1.1:3793255-3793274 | None:intergenic | 25.0% |
| ! | AAATGTTAAAGAATGTCCTT+AGG | + | chr1.1:3792304-3792323 | None:intergenic | 25.0% |
| ! | AATGATAAAATTGGGATATC+TGG | - | chr1.1:3792431-3792450 | MS.gene24420:intron | 25.0% |
| ! | AATGCAGTTAGAAATAATTG+GGG | - | chr1.1:3790882-3790901 | MS.gene24420:CDS | 25.0% |
| ! | AATGTTAAAGAATGTCCTTA+GGG | + | chr1.1:3792303-3792322 | None:intergenic | 25.0% |
| ! | AATTGTTTATCAAGTAATGG+AGG | - | chr1.1:3790516-3790535 | MS.gene24420:intron | 25.0% |
| ! | AGAAATGTTGAAGGAAAATA+AGG | - | chr1.1:3792795-3792814 | MS.gene24420:intron | 25.0% |
| ! | ATAAGGATGTAAAGTACAAA+GGG | - | chr1.1:3790805-3790824 | MS.gene24420:CDS | 25.0% |
| ! | ATATGTTTACTCCAATGATA+TGG | - | chr1.1:3793020-3793039 | MS.gene24420:CDS | 25.0% |
| ! | ATCATTTGAAAATCATGGAA+GGG | + | chr1.1:3792417-3792436 | None:intergenic | 25.0% |
| ! | ATCTTACAAATTATGAAGGA+TGG | + | chr1.1:3791096-3791115 | None:intergenic | 25.0% |
| ! | ATGTCGAAGGAAAAAAAATA+TGG | - | chr1.1:3791762-3791781 | MS.gene24420:intron | 25.0% |
| ! | CAATGCAGTTAGAAATAATT+GGG | - | chr1.1:3790881-3790900 | MS.gene24420:CDS | 25.0% |
| ! | CTTCTTTCATCAATTTCTTT+AGG | + | chr1.1:3792733-3792752 | None:intergenic | 25.0% |
| ! | GATGCAAAATTCATATTAAC+AGG | - | chr1.1:3792817-3792836 | MS.gene24420:intron | 25.0% |
| ! | TAAAATATAAGGTCAATGAG+AGG | + | chr1.1:3792139-3792158 | None:intergenic | 25.0% |
| ! | TACTCTTTACCTATAACAAA+TGG | + | chr1.1:3793339-3793358 | None:intergenic | 25.0% |
| ! | TATAAACTAAACATGTCACA+CGG | + | chr1.1:3792092-3792111 | None:intergenic | 25.0% |
| ! | TATCATTTGAAAATCATGGA+AGG | + | chr1.1:3792418-3792437 | None:intergenic | 25.0% |
| ! | TGAAAAAGTCAAATATGTGT+AGG | + | chr1.1:3792013-3792032 | None:intergenic | 25.0% |
| ! | TTAGAATGTGAATATGATGA+TGG | + | chr1.1:3791569-3791588 | None:intergenic | 25.0% |
| ! | TTTATCTTATTGTTTGCAGA+TGG | - | chr1.1:3791022-3791041 | MS.gene24420:CDS | 25.0% |
| ! | TTTCCATCAATGTAAATGTT+AGG | + | chr1.1:3791447-3791466 | None:intergenic | 25.0% |
| !! | ATTGTTTATCAAGTAATGGA+GGG | - | chr1.1:3790517-3790536 | MS.gene24420:intron | 25.0% |
| !! | GTAAAGAGTATAAACAGAAT+TGG | - | chr1.1:3793349-3793368 | MS.gene24420:CDS | 25.0% |
| !!! | TAAGATAAAACCAAGTTGAT+TGG | + | chr1.1:3791011-3791030 | None:intergenic | 25.0% |
| !!! | TAGAAGGTGTTTATACATTT+GGG | - | chr1.1:3792920-3792939 | MS.gene24420:CDS | 25.0% |
| !!! | TATGATGATGGCAAATTATA+TGG | + | chr1.1:3791557-3791576 | None:intergenic | 25.0% |
| !!! | TATTTTTCCTTTCAAGTTGA+TGG | - | chr1.1:3791674-3791693 | MS.gene24420:intron | 25.0% |
| !!! | TCTCCAATAATTTTCAAGAA+GGG | + | chr1.1:3790477-3790496 | None:intergenic | 25.0% |
| !!! | TTAGAAGGTGTTTATACATT+TGG | - | chr1.1:3792919-3792938 | MS.gene24420:CDS | 25.0% |
| AAAGATCTTAAACGCAGTTT+GGG | - | chr1.1:3793290-3793309 | MS.gene24420:CDS | 30.0% | |
| ATATTAACAGGGCATAGTTT+GGG | - | chr1.1:3792829-3792848 | MS.gene24420:intron | 30.0% | |
| ATGTATTGAAATCCAGATTC+TGG | - | chr1.1:3793221-3793240 | MS.gene24420:CDS | 30.0% | |
| ATGTCACATGTATAGAGATA+TGG | + | chr1.1:3792048-3792067 | None:intergenic | 30.0% | |
| ATGTTCTCAAAAGTCAACTT+AGG | + | chr1.1:3791210-3791229 | None:intergenic | 30.0% | |
| CAAGAAAATTTCGACAAAGA+TGG | - | chr1.1:3790403-3790422 | MS.gene24420:CDS | 30.0% | |
| CATAAGGATGTAAAGTACAA+AGG | - | chr1.1:3790804-3790823 | MS.gene24420:CDS | 30.0% | |
| CATCAATGTAAATGTTAGGT+GGG | + | chr1.1:3791443-3791462 | None:intergenic | 30.0% | |
| CTCTTCTTCAACTTTCTTAA+AGG | - | chr1.1:3790549-3790568 | MS.gene24420:intron | 30.0% | |
| GAAAATAATGCAATGCTACT+AGG | - | chr1.1:3791364-3791383 | MS.gene24420:intron | 30.0% | |
| GAAAATTATTGGAGACATGT+TGG | - | chr1.1:3790482-3790501 | MS.gene24420:CDS | 30.0% | |
| GATATACGAACGTAGAAATT+TGG | - | chr1.1:3791113-3791132 | MS.gene24420:CDS | 30.0% | |
| GATCCCTTCTTGAAAATTAT+TGG | - | chr1.1:3790471-3790490 | MS.gene24420:CDS | 30.0% | |
| GCAATGCAGTTAGAAATAAT+TGG | - | chr1.1:3790880-3790899 | MS.gene24420:CDS | 30.0% | |
| TACCTATAACAAATGGTAGA+AGG | + | chr1.1:3793332-3793351 | None:intergenic | 30.0% | |
| TGATTATTTGCCAATCAACT+TGG | - | chr1.1:3790998-3791017 | MS.gene24420:CDS | 30.0% | |
| TTAACTACCATCAACTTGAA+AGG | + | chr1.1:3791684-3791703 | None:intergenic | 30.0% | |
| TTTATAACAGCATTGTTTCG+TGG | - | chr1.1:3791395-3791414 | MS.gene24420:intron | 30.0% | |
| TTTGCTTTACTTGTCTAGAA+AGG | - | chr1.1:3793175-3793194 | MS.gene24420:intron | 30.0% | |
| ! | AGAACTATTTCTCTTTGTTC+TGG | - | chr1.1:3793259-3793278 | MS.gene24420:CDS | 30.0% |
| ! | GAACTATTTCTCTTTGTTCT+GGG | - | chr1.1:3793260-3793279 | MS.gene24420:CDS | 30.0% |
| ! | GTATAAACAGAATTGGTTCA+TGG | - | chr1.1:3793356-3793375 | MS.gene24420:CDS | 30.0% |
| ! | GTCATTCTCAACATCAATTT+TGG | + | chr1.1:3791611-3791630 | None:intergenic | 30.0% |
| ! | TGTTTGCAGATGGAATTTTT+GGG | - | chr1.1:3791032-3791051 | MS.gene24420:CDS | 30.0% |
| ! | TTGTTTGCAGATGGAATTTT+TGG | - | chr1.1:3791031-3791050 | MS.gene24420:CDS | 30.0% |
| !! | AATTTTCAAGAAGGGATCTA+TGG | + | chr1.1:3790469-3790488 | None:intergenic | 30.0% |
| !! | ATCTCCATGTATTTGTTGTT+CGG | + | chr1.1:3790274-3790293 | None:intergenic | 30.0% |
| !! | ATGGAGATTATCTATTTCTG+AGG | - | chr1.1:3790286-3790305 | MS.gene24420:CDS | 30.0% |
| !! | CTTTTGTAGACTCCATTTTT+TGG | + | chr1.1:3792525-3792544 | None:intergenic | 30.0% |
| !! | GTCTCCAATAATTTTCAAGA+AGG | + | chr1.1:3790478-3790497 | None:intergenic | 30.0% |
| !! | TTCCTTCTACCATTTGTTAT+AGG | - | chr1.1:3793327-3793346 | MS.gene24420:CDS | 30.0% |
| !!! | AATTTAAATTTTGGTGGTGC+AGG | - | chr1.1:3790690-3790709 | MS.gene24420:CDS | 30.0% |
| AAAGAATGTCCTTAGGGTAT+TGG | + | chr1.1:3792297-3792316 | None:intergenic | 35.0% | |
| AACGTAAGCACATGTATTTG+GGG | - | chr1.1:3791246-3791265 | MS.gene24420:intron | 35.0% | |
| AAGAGGGATTTGTCATCATA+AGG | + | chr1.1:3793057-3793076 | None:intergenic | 35.0% | |
| AAGCTGTTGAAAAACAGACA+AGG | + | chr1.1:3793096-3793115 | None:intergenic | 35.0% | |
| AATGCAACCACAATCAAGTT+TGG | + | chr1.1:3792577-3792596 | None:intergenic | 35.0% | |
| ACAACGTAAGCACATGTATT+TGG | - | chr1.1:3791244-3791263 | MS.gene24420:intron | 35.0% | |
| AGAGGGATTTGTCATCATAA+GGG | + | chr1.1:3793056-3793075 | None:intergenic | 35.0% | |
| AGTCAAATATGTGTAGGACT+AGG | + | chr1.1:3792007-3792026 | None:intergenic | 35.0% | |
| CAAAGATCTTAAACGCAGTT+TGG | - | chr1.1:3793289-3793308 | MS.gene24420:CDS | 35.0% | |
| CAAAGGGTTACTATCTATCA+TGG | - | chr1.1:3790821-3790840 | MS.gene24420:CDS | 35.0% | |
| CAACGTAAGCACATGTATTT+GGG | - | chr1.1:3791245-3791264 | MS.gene24420:intron | 35.0% | |
| CAATGAAGCTTCTATTTGCT+AGG | + | chr1.1:3790362-3790381 | None:intergenic | 35.0% | |
| CATATTAACAGGGCATAGTT+TGG | - | chr1.1:3792828-3792847 | MS.gene24420:intron | 35.0% | |
| CCACCTAACATTTACATTGA+TGG | - | chr1.1:3791441-3791460 | MS.gene24420:intron | 35.0% | |
| CCATCAATGTAAATGTTAGG+TGG | + | chr1.1:3791444-3791463 | None:intergenic | 35.0% | |
| CCATGCAGATTACCAAAAAA+TGG | - | chr1.1:3792510-3792529 | MS.gene24420:intron | 35.0% | |
| CCTTCTAACTGATCTAACAA+CGG | + | chr1.1:3792907-3792926 | None:intergenic | 35.0% | |
| CTAAATCAACTCTTGTGTCA+AGG | + | chr1.1:3790770-3790789 | None:intergenic | 35.0% | |
| CTAGGTTTGATGAAAACAAG+AGG | + | chr1.1:3790344-3790363 | None:intergenic | 35.0% | |
| TATTGAAATCCAGATTCTGG+AGG | - | chr1.1:3793224-3793243 | MS.gene24420:CDS | 35.0% | |
| TTGATTGTGGTTGCATTTAG+AGG | - | chr1.1:3792580-3792599 | MS.gene24420:intron | 35.0% | |
| TTGTTAGCATAACCCGATTA+AGG | + | chr1.1:3792168-3792187 | None:intergenic | 35.0% | |
| ! | ACTGAAGTGCTTAAAGAAGA+GGG | + | chr1.1:3793073-3793092 | None:intergenic | 35.0% |
| ! | CAAACTGCGTTTAAGATCTT+TGG | + | chr1.1:3793291-3793310 | None:intergenic | 35.0% |
| ! | CTTGTTGGATTGATAATTCC+AGG | - | chr1.1:3793390-3793409 | MS.gene24420:CDS | 35.0% |
| ! | GTTTGCAGATGGAATTTTTG+GGG | - | chr1.1:3791033-3791052 | MS.gene24420:CDS | 35.0% |
| ! | TTTTCAACAGCTTGTACCAA+GGG | - | chr1.1:3793103-3793122 | MS.gene24420:intron | 35.0% |
| !! | TTTTTCAACAGCTTGTACCA+AGG | - | chr1.1:3793102-3793121 | MS.gene24420:intron | 35.0% |
| !!! | CCATTTTTTGGTAATCTGCA+TGG | + | chr1.1:3792513-3792532 | None:intergenic | 35.0% |
| AAACAGACGTTGATATCTCC+TGG | - | chr1.1:3792632-3792651 | MS.gene24420:intron | 40.0% | |
| AATCAACTCTTGTGTCAAGG+TGG | + | chr1.1:3790767-3790786 | None:intergenic | 40.0% | |
| ACTCCAATGATATGGTTCCT+AGG | - | chr1.1:3793028-3793047 | MS.gene24420:CDS | 40.0% | |
| AGGTGGGAAACCAATTGTTA+GGG | + | chr1.1:3791427-3791446 | None:intergenic | 40.0% | |
| CCGTTGTTAGATCAGTTAGA+AGG | - | chr1.1:3792904-3792923 | MS.gene24420:CDS | 40.0% | |
| CCTAGAGCTTCTAATTTCCA+AGG | - | chr1.1:3793476-3793495 | MS.gene24420:CDS | 40.0% | |
| CCTTGGAAATTAGAAGCTCT+AGG | + | chr1.1:3793479-3793498 | None:intergenic | 40.0% | |
| CGTAGTAAGCATATTGATGC+TGG | + | chr1.1:3792756-3792775 | None:intergenic | 40.0% | |
| GATCCTAGGAACCATATCAT+TGG | + | chr1.1:3793034-3793053 | None:intergenic | 40.0% | |
| GCAACTGAGAGAAATGTTGA+AGG | - | chr1.1:3792786-3792805 | MS.gene24420:intron | 40.0% | |
| GGTTCCGAACAACAAATACA+TGG | - | chr1.1:3790267-3790286 | MS.gene24420:CDS | 40.0% | |
| GTTTGTCTAAGAATCCCAGT+CGG | + | chr1.1:3793455-3793474 | None:intergenic | 40.0% | |
| TAATCTGCAGTGAAATGAGC+TGG | + | chr1.1:3793420-3793439 | None:intergenic | 40.0% | |
| TAGGTGGGAAACCAATTGTT+AGG | + | chr1.1:3791428-3791447 | None:intergenic | 40.0% | |
| TCCTCTTTACCAATACCCTA+AGG | - | chr1.1:3792285-3792304 | MS.gene24420:intron | 40.0% | |
| TTGTCATCATAAGGGATCCT+AGG | + | chr1.1:3793048-3793067 | None:intergenic | 40.0% | |
| TTTGTCTAAGAATCCCAGTC+GGG | + | chr1.1:3793454-3793473 | None:intergenic | 40.0% | |
| ! | AAAGCAAGTGTTGTGGAACT+AGG | - | chr1.1:3790315-3790334 | MS.gene24420:CDS | 40.0% |
| ! | AATCAAGTTTGGCTCAGACT+TGG | + | chr1.1:3792566-3792585 | None:intergenic | 40.0% |
| ! | ATTGGTTCATGGCATTGTTC+AGG | - | chr1.1:3793367-3793386 | MS.gene24420:CDS | 40.0% |
| ! | GACTGAAGTGCTTAAAGAAG+AGG | + | chr1.1:3793074-3793093 | None:intergenic | 40.0% |
| !! | GCTTTGGGACTATTAGAGAA+CGG | - | chr1.1:3792700-3792719 | MS.gene24420:CDS | 40.0% |
| !! | TCCTTAGGGTATTGGTAAAG+AGG | + | chr1.1:3792289-3792308 | None:intergenic | 40.0% |
| !!! | TCCACAACACTTGCTTTTTG+TGG | + | chr1.1:3790312-3790331 | None:intergenic | 40.0% |
| !!! | TTTTGGGGCTATACAGCTTT+TGG | - | chr1.1:3791048-3791067 | MS.gene24420:CDS | 40.0% |
| AACTTCTCGTCTCCAACTCT+TGG | + | chr1.1:3792949-3792968 | None:intergenic | 45.0% | |
| ACATTTGGGCAACCAAGAGT+TGG | - | chr1.1:3792934-3792953 | MS.gene24420:CDS | 45.0% | |
| AGAGTTGGAGACGAGAAGTT+TGG | - | chr1.1:3792949-3792968 | MS.gene24420:CDS | 45.0% | |
| ATGGCATTGTTCAGGCTTGT+TGG | - | chr1.1:3793375-3793394 | MS.gene24420:CDS | 45.0% | |
| GACTATTAGAGAACGGTGGA+TGG | - | chr1.1:3792707-3792726 | MS.gene24420:CDS | 45.0% | |
| GATAACACCGGAAAAGTCGT+CGG | - | chr1.1:3790719-3790738 | MS.gene24420:CDS | 45.0% | |
| GATCTTAAACGCAGTTTGGG+AGG | - | chr1.1:3793293-3793312 | MS.gene24420:CDS | 45.0% | |
| GTAGATTTCATACCTGCCCT+TGG | + | chr1.1:3793122-3793141 | None:intergenic | 45.0% | |
| GTCTGAGCCAAACTTGATTG+TGG | - | chr1.1:3792567-3792586 | MS.gene24420:intron | 45.0% | |
| GTGGAATCTGCCCTAACAAT+TGG | - | chr1.1:3791414-3791433 | MS.gene24420:intron | 45.0% | |
| TATGTCAATGCTACCCGACT+GGG | - | chr1.1:3793438-3793457 | MS.gene24420:CDS | 45.0% | |
| TGGTATGACCTACCAAACGT+GGG | - | chr1.1:3792652-3792671 | MS.gene24420:intron | 45.0% | |
| TTAACAGGGCATAGTTTGGG+TGG | - | chr1.1:3792832-3792851 | MS.gene24420:intron | 45.0% | |
| TTATGTCAATGCTACCCGAC+TGG | - | chr1.1:3793437-3793456 | MS.gene24420:CDS | 45.0% | |
| TTCCATTGCACAGCGTCAAA+TGG | + | chr1.1:3792613-3792632 | None:intergenic | 45.0% | |
| TTCTTGCCTCAAGTCCTTGT+GGG | + | chr1.1:3790389-3790408 | None:intergenic | 45.0% | |
| TTGGAGACATGTTGGAGTCT+TGG | - | chr1.1:3790490-3790509 | MS.gene24420:CDS | 45.0% | |
| TTGGGACTATTAGAGAACGG+TGG | - | chr1.1:3792703-3792722 | MS.gene24420:CDS | 45.0% | |
| TTTCTTGCCTCAAGTCCTTG+TGG | + | chr1.1:3790390-3790409 | None:intergenic | 45.0% | |
| ! | AGCTTCATTGATTGCCCACA+AGG | - | chr1.1:3790372-3790391 | MS.gene24420:CDS | 45.0% |
| ! | GCCACAAAAAGCAAGTGTTG+TGG | - | chr1.1:3790308-3790327 | MS.gene24420:CDS | 45.0% |
| ! | GGTGGGTTCATGAAAGCTTT+GGG | - | chr1.1:3792685-3792704 | MS.gene24420:intron | 45.0% |
| ! | TCAAGTAATGGAGGGCTCAT+TGG | - | chr1.1:3790525-3790544 | MS.gene24420:intron | 45.0% |
| ! | TGAAATCCAGATTCTGGAGG+AGG | - | chr1.1:3793227-3793246 | MS.gene24420:CDS | 45.0% |
| !! | GGGCTATACAGCTTTTGGAA+CGG | - | chr1.1:3791053-3791072 | MS.gene24420:CDS | 45.0% |
| !! | TGGTGGGTTCATGAAAGCTT+TGG | - | chr1.1:3792684-3792703 | MS.gene24420:intron | 45.0% |
| !!! | AAATTTTGGTGGTGCAGGAG+AGG | - | chr1.1:3790695-3790714 | MS.gene24420:CDS | 45.0% |
| !! | AAAAAAATTAAACTTATTAT+AGG | + | chr1.1:3791172-3791191 | None:intergenic | 5.0% |
| AACGTGGGTAAGATGCATGG+TGG | - | chr1.1:3792667-3792686 | MS.gene24420:intron | 50.0% | |
| ACGTGGGTAAGATGCATGGT+GGG | - | chr1.1:3792668-3792687 | MS.gene24420:intron | 50.0% | |
| CACGTTTGGTAGGTCATACC+AGG | + | chr1.1:3792653-3792672 | None:intergenic | 50.0% | |
| CCAAACGTGGGTAAGATGCA+TGG | - | chr1.1:3792664-3792683 | MS.gene24420:intron | 50.0% | |
| CCATGCATCTTACCCACGTT+TGG | + | chr1.1:3792667-3792686 | None:intergenic | 50.0% | |
| CTCCATTTGACGCTGTGCAA+TGG | - | chr1.1:3792608-3792627 | MS.gene24420:intron | 50.0% | |
| CTGGTATGACCTACCAAACG+TGG | - | chr1.1:3792651-3792670 | MS.gene24420:intron | 50.0% | |
| GCAGTTTGGGAGGTGATTAG+AGG | - | chr1.1:3793303-3793322 | MS.gene24420:CDS | 50.0% | |
| GCATAGTTTGGGTGGAGCAT+TGG | - | chr1.1:3792840-3792859 | MS.gene24420:intron | 50.0% | |
| GCATCTTACCCACGTTTGGT+AGG | + | chr1.1:3792663-3792682 | None:intergenic | 50.0% | |
| GTGAAATGAGCTGGTAGTCC+TGG | + | chr1.1:3793411-3793430 | None:intergenic | 50.0% | |
| TGATTGCCCACAAGGACTTG+AGG | - | chr1.1:3790380-3790399 | MS.gene24420:CDS | 50.0% | |
| TGCAGGAGAGGTGATAACAC+CGG | - | chr1.1:3790707-3790726 | MS.gene24420:CDS | 50.0% | |
| AACACCGGAAAAGTCGTCGG+CGG | - | chr1.1:3790722-3790741 | MS.gene24420:CDS | 55.0% | |
| CAACAGCTTGTACCAAGGGC+AGG | - | chr1.1:3793107-3793126 | MS.gene24420:intron | 55.0% | |
| GCGGAGTTCTTATCGGTGGT+TGG | - | chr1.1:3790741-3790760 | MS.gene24420:CDS | 55.0% | |
| GTCGTCGGCGGAGTTCTTAT+CGG | - | chr1.1:3790734-3790753 | MS.gene24420:CDS | 55.0% | |
| TTGGCTCCTCCTCCAGAATC+TGG | + | chr1.1:3793236-3793255 | None:intergenic | 55.0% | |
| ! | AACTCCGCCGACGACTTTTC+CGG | + | chr1.1:3790729-3790748 | None:intergenic | 55.0% |
| GTCGGCGGAGTTCTTATCGG+TGG | - | chr1.1:3790737-3790756 | MS.gene24420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 3790264 | 3793506 | 3790264 | ID=MS.gene24420 |
| chr1.1 | mRNA | 3790264 | 3793506 | 3790264 | ID=MS.gene24420.t1;Parent=MS.gene24420 |
| chr1.1 | exon | 3793200 | 3793506 | 3793200 | ID=MS.gene24420.t1.exon1;Parent=MS.gene24420.t1 |
| chr1.1 | CDS | 3793200 | 3793506 | 3793200 | ID=cds.MS.gene24420.t1;Parent=MS.gene24420.t1 |
| chr1.1 | exon | 3792865 | 3793058 | 3792865 | ID=MS.gene24420.t1.exon2;Parent=MS.gene24420.t1 |
| chr1.1 | CDS | 3792865 | 3793058 | 3792865 | ID=cds.MS.gene24420.t1;Parent=MS.gene24420.t1 |
| chr1.1 | exon | 3792696 | 3792729 | 3792696 | ID=MS.gene24420.t1.exon3;Parent=MS.gene24420.t1 |
| chr1.1 | CDS | 3792696 | 3792729 | 3792696 | ID=cds.MS.gene24420.t1;Parent=MS.gene24420.t1 |
| chr1.1 | exon | 3790642 | 3791252 | 3790642 | ID=MS.gene24420.t1.exon4;Parent=MS.gene24420.t1 |
| chr1.1 | CDS | 3790642 | 3791252 | 3790642 | ID=cds.MS.gene24420.t1;Parent=MS.gene24420.t1 |
| chr1.1 | exon | 3790264 | 3790533 | 3790264 | ID=MS.gene24420.t1.exon5;Parent=MS.gene24420.t1 |
| chr1.1 | CDS | 3790264 | 3790533 | 3790264 | ID=cds.MS.gene24420.t1;Parent=MS.gene24420.t1 |
| Gene Sequence |
| Protein sequence |
