AlfalfaGEDB | MS.gene94262

M. sativa cultivar XinJiangDaYe / MS.gene94262

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00043.28 PF02798.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94262.t1	XP_013449023.1	92.4	224	17	0	1	224	1	224	4.10E-115	424.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94262.t1	P32110	72.4	225	61	1	1	224	1	225	1.1e-89	330.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94262.t1	A0A072UB35	92.4	224	17	0	1	224	1	224	2.9e-115	424.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene94262	-0.846558	2.01E-59	-1.69E-46
MS.gene049217	MS.gene94262	-0.844764	6.18E-59	-1.69E-46
MS.gene049222	MS.gene94262	-0.838486	2.80E-57	-1.69E-46
MS.gene049259	MS.gene94262	0.836133	1.12E-56	-1.69E-46
MS.gene049281	MS.gene94262	0.830389	3.02E-55	-1.69E-46
MS.gene049285	MS.gene94262	-0.840201	1.00E-57	-1.69E-46
MS.gene049312	MS.gene94262	0.800744	1.25E-48	-1.69E-46
MS.gene049320	MS.gene94262	-0.862535	4.73E-64	-1.69E-46
MS.gene049402	MS.gene94262	0.821928	3.11E-53	-1.69E-46
MS.gene049483	MS.gene94262	0.850541	1.59E-60	-1.69E-46

Showing 1 to 10 of 155 entries

Previous1 2 3 4 5…16Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94262.t1	MTR_7g065265	92.411	224	17	0	1	224	1	224	4.98e-152	421
MS.gene94262.t1	MTR_7g065290	91.964	224	18	0	1	224	1	224	2.95e-151	419
MS.gene94262.t1	MTR_7g065270	87.500	224	28	0	1	224	1	224	3.98e-143	399
MS.gene94262.t1	MTR_7g065590	82.143	224	40	0	1	224	1	224	3.24e-134	376
MS.gene94262.t1	MTR_7g065600	79.911	224	45	0	1	224	1	224	1.00e-133	375
MS.gene94262.t1	MTR_7g065230	81.696	224	36	1	1	224	1	219	6.72e-131	367
MS.gene94262.t1	MTR_7g065260	77.778	225	49	1	1	224	8	232	1.36e-116	332
MS.gene94262.t1	MTR_7g065720	70.667	225	65	1	1	224	1	225	1.27e-112	322
MS.gene94262.t1	MTR_7g065660	68.610	223	70	0	1	223	1	223	1.56e-112	321
MS.gene94262.t1	MTR_7g065630	68.161	223	67	1	1	223	19	237	1.68e-107	309

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94262.t1	AT3G09270	53.125	224	101	4	3	223	2	224	4.50e-77	231
MS.gene94262.t1	AT2G29420	47.945	219	112	2	3	220	5	222	1.13e-71	218
MS.gene94262.t1	AT2G29490	49.048	210	102	4	1	207	1	208	1.18e-60	190
MS.gene94262.t1	AT2G29450	47.826	207	106	2	3	207	2	208	2.02e-58	184
MS.gene94262.t1	AT2G29480	47.847	209	106	3	1	207	1	208	7.67e-58	182
MS.gene94262.t1	AT2G29460	44.595	222	120	3	1	220	1	221	5.68e-56	178
MS.gene94262.t1	AT2G29440	45.933	209	109	4	1	207	1	207	2.63e-54	174
MS.gene94262.t1	AT2G29470	45.024	211	110	5	1	207	1	209	2.53e-53	171
MS.gene94262.t1	AT1G10370	41.629	221	120	3	1	214	1	219	8.08e-50	162
MS.gene94262.t1	AT1G69930	36.283	226	138	2	2	221	7	232	1.24e-48	159

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Find 53 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCCTTGGCACGTTTC+TGG	0.164876	7.3:+40644619	MS.gene94262:CDS
AAATATGAGCAAGAAAAGGT+TGG	0.516900	7.3:+40644441	MS.gene94262:CDS
AAGGATCATTAGGCAAGATA+GGG	0.505915	7.3:-40644593	None:intergenic
AAGTCCATTTGTAACAAGGG+TGG	0.642673	7.3:+40644386	MS.gene94262:CDS
AATATATTCAAGAATCACAA+GGG	0.678725	7.3:-40644550	None:intergenic
AATATGAGCAAGAAAAGGTT+GGG	0.503590	7.3:+40644442	MS.gene94262:CDS
AATCACAAGGGACTCTGATA+TGG	0.285005	7.3:-40644538	None:intergenic
AATGCCAAAAGGGTCTCTCT+AGG	0.585218	7.3:-40645553	None:intergenic
AATTTCCAAAGCTTTACAAT+TGG	0.430707	7.3:+40645485	MS.gene94262:CDS
ACAAGCTTTCCGAACACCAT+TGG	0.501376	7.3:-40645266	None:intergenic

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGAGCAAGAAAAGGT+TGG	+	chr7.3:40644441-40644460	MS.gene94262:CDS	30.0%
AAGAATCTGAATTCGATTTC+TGG	-	chr7.3:40644977-40644996	None:intergenic	30.0%
AATATGAGCAAGAAAAGGTT+GGG	+	chr7.3:40644442-40644461	MS.gene94262:CDS	30.0%
AGAATCTGAATTCGATTTCT+GGG	-	chr7.3:40644976-40644995	None:intergenic	30.0%
CAACAATCATCCAATTGTTA+AGG	+	chr7.3:40645519-40645538	MS.gene94262:CDS	30.0%
GAACCAAAAAGCTATGATTA+CGG	-	chr7.3:40645419-40645438	None:intergenic	30.0%
GAGTAATGAGTTCCATAAAA+TGG	-	chr7.3:40645012-40645031	None:intergenic	30.0%
GTTAACCATTCGATTATCAA+GGG	+	chr7.3:40644880-40644899	MS.gene94262:intron	30.0%
TACCTTGTCATCTATGAAAT+TGG	-	chr7.3:40644646-40644665	None:intergenic	30.0%
TGTTAACCATTCGATTATCA+AGG	+	chr7.3:40644879-40644898	MS.gene94262:intron	30.0%

Showing 1 to 10 of 88 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	40644342	40645615	40644342	ID=MS.gene94262
chr7.3	mRNA	40644342	40645615	40644342	ID=MS.gene94262.t1;Parent=MS.gene94262
chr7.3	exon	40644342	40644662	40644342	ID=MS.gene94262.t1.exon1;Parent=MS.gene94262.t1
chr7.3	CDS	40644342	40644662	40644342	ID=cds.MS.gene94262.t1;Parent=MS.gene94262.t1
chr7.3	exon	40645262	40645615	40645262	ID=MS.gene94262.t1.exon2;Parent=MS.gene94262.t1
chr7.3	CDS	40645262	40645615	40645262	ID=cds.MS.gene94262.t1;Parent=MS.gene94262.t1

Gene Sequence

>MS.gene94262

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGATTGGTGGAAAGTCCATTTGTAACAAGGGTGGAGATTGCTCTAAAATTGAAGGGAGTTGAATACAAATATGAGCAAGAAAAGGTTGGGAACTTGAGTGATACACTCAAAAAATACAACCCTGTTTACAAGAAAGTTCCTGTATTTGTTCATAATGATAAGCCCATATCAGAGTCCCTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAACCCTATCTTGCCTAATGATCCTTATAAAAGAGCCTTGGCACGTTTCTGGTCCAATTTCATAGATGACAAGGTAATTAGTTCCCTCTTCTATTTTTATCGATGTAGCTCAAGTCCAAGTTCAAATATCCAACTTTATTATTTATTTTTTTAAGGAAGATCCAACTTTAGTTAGCACTAAATAGTTGACTAAGTAAATTTGAGATCTTAGGTGTGTCCTTAGACCCATGTTGTCAACAAAAAAAGATTAACTTTGATTAACTTTGATAAACAAAATAATTTTTTTGGGTGTTAACCATTCGATTATCAAGGGATAAAGATCTTGATAATTCGAACTTCAGCCGAAAGGTAAATAAAGTACCATTTGATAAAAAATTGTTTCACCCAGAAATCGAATTCAGATTCTTTTAAACAATTCGCCATTTTATGGAACTCATTACTCACCTGAGTCCAATTGTTTTTTTTTAACAAATTAATTTTGATTGTGTAAAAGAATATTTTATTTTATTTGTTTAAGTAAAAAATGAAATTTAAAAATTTGAGAAAGTATCTAACTTAAAGGACCACATGTGATATTTAACCTAAAAACAAATCAATTAACTTATACTACTAACTCAATGTGCATATAATTTTTTTCTTACTTCTAATAATTACCTTAATTTGTGAGACCAGTGCTCCAATGGTGTTCGGAAAGCTTGTTTCACTCTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCTCTTCAATTTCTTGAGAATGAGCTCAAGGACAAATTCTTTGGTGGGGAGGATATTGGCTTTGTTGACATTGCTGCCGTAATCATAGCTTTTTGGTTCCCACCTATACAAGAAGCATTTGGACTGAAATTGTTCACTAGTGAGGAATTTCCAAAGCTTTACAATTGGAGCCAAGAATTCAACAATCATCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGACCCTTTTGGCATTCTACAAAGCTCGTTATGAAAGTCTTGTTGCTTCAAAATAG

Protein sequence

>MS.gene94262.t1

MASNKEEVKVFGLVESPFVTRVEIALKLKGVEYKYEQEKVGNLSDTLKKYNPVYKKVPVFVHNDKPISESLVILEYIDETWKQNPILPNDPYKRALARFWSNFIDDKCSNGVRKACFTLDEKEREKSIEETKEALQFLENELKDKFFGGEDIGFVDIAAVIIAFWFPPIQEAFGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPRETLLAFYKARYESLVASK