AlfalfaGEDB | MS.gene56389

M. sativa cultivar XinJiangDaYe / MS.gene56389

KEGG: K13457
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56389.t1	XP_003598409.1	92.5	946	47	1	1	922	1	946	0.00E+00	1604

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56389.t1	Q39214	33.1	928	571	18	1	897	1	909	1.6e-94	349.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56389.t1	G7IVS7	92.5	946	47	1	1	922	1	946	0.0e+00	1604.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene56389	-0.839126	1.91E-57	-1.69E-46
MS.gene049217	MS.gene56389	-0.821711	3.49E-53	-1.69E-46
MS.gene049222	MS.gene56389	-0.826045	3.36E-54	-1.69E-46
MS.gene049232	MS.gene56389	-0.822407	2.41E-53	-1.69E-46
MS.gene049259	MS.gene56389	0.825012	5.91E-54	-1.69E-46
MS.gene049281	MS.gene56389	0.834418	3.03E-56	-1.69E-46
MS.gene049285	MS.gene56389	-0.829538	4.87E-55	-1.69E-46
MS.gene049320	MS.gene56389	-0.846295	2.38E-59	-1.69E-46
MS.gene049402	MS.gene56389	0.809014	2.33E-50	-1.69E-46
MS.gene049549	MS.gene56389	0.805077	1.59E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene56389.t1	MTR_3g011280	92.389	946	48	1	1	922	1	946	1778
MS.gene56389.t1	MTR_3g011280	89.218	946	46	2	1	922	1	914	1694
MS.gene56389.t1	MTR_3g011420	82.503	943	140	2	1	918	1	943	1559
MS.gene56389.t1	MTR_3g011390	79.874	949	163	4	1	922	1	948	1538
MS.gene56389.t1	MTR_0691s0020	76.321	946	200	1	1	922	1	946	1450
MS.gene56389.t1	MTR_3g011480	75.899	946	203	2	1	922	1	945	1438
MS.gene56389.t1	MTR_3g011270	73.862	945	222	2	1	921	1	944	1407
MS.gene56389.t1	MTR_3g011300	73.651	945	222	3	1	921	1	942	1394
MS.gene56389.t1	MTR_3g011460	74.762	947	212	4	1	922	1	945	1392
MS.gene56389.t1	MTR_3g011370	73.150	946	230	1	1	922	1	946	1390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56389.t1	AT3G07040	30.280	928	597	18	1	897	1	909	1.80e-128	410
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G48620	28.887	952	571	30	1	897	1	901	4.15e-90	306
MS.gene56389.t1	AT5G43470	28.601	951	575	28	1	897	1	901	5.74e-90	306
MS.gene56389.t1	AT5G43470	28.601	951	575	28	1	897	1	901	5.74e-90	306
MS.gene56389.t1	AT5G43470	28.601	951	575	28	1	897	1	901	5.74e-90	306

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Find 177 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAATACAAAATGCA+TGG	0.594465	3.1:-7558879	None:intergenic
AAAGTATTTAGATCTCATCT+TGG	0.501352	3.1:+7558621	MS.gene56389:CDS
AAATGAAGCGCCTGAAGTTG+GGG	0.562778	3.1:-7559863	None:intergenic
AACCATGATTGAATGGCAAA+AGG	0.495353	3.1:+7558755	MS.gene56389:CDS
AACTAGATACATTGCCTGAA+TGG	0.431840	3.1:+7559894	MS.gene56389:CDS
AACTCCAGAGCAAGTTGCAG+AGG	0.569406	3.1:+7558986	MS.gene56389:CDS
AACTGCAGTAACATTAGCCT+TGG	0.456185	3.1:+7557573	MS.gene56389:CDS
AAGAGTTCCCATGCTTTGTT+TGG	0.352067	3.1:-7558591	None:intergenic
AAGGGTTTGTTAAATCTGAT+GGG	0.568651	3.1:+7558958	MS.gene56389:CDS
AAGTTGGAACACTTCTCCCA+AGG	0.654538	3.1:-7557590	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTTCTTCCTAAATCAGT+TGG	+	chr3.1:7559431-7559450	MS.gene56389:CDS	30.0%
AATTCTATCCTTATAGACGA+AGG	+	chr3.1:7560118-7560137	MS.gene56389:CDS	30.0%
ACAGAAATTGTAGGATTTGA+AGG	+	chr3.1:7558084-7558103	MS.gene56389:CDS	30.0%
AGGATTGCTGATAAAAATGA+TGG	+	chr3.1:7558290-7558309	MS.gene56389:CDS	30.0%
AGTTAAGAAGGTTAGGTTTA+AGG	+	chr3.1:7559714-7559733	MS.gene56389:intron	30.0%
ATGCAAAATTTCACCATCAT+AGG	-	chr3.1:7560038-7560057	None:intergenic	30.0%
ATGTAATTGACGAATACCTT+CGG	+	chr3.1:7557797-7557816	MS.gene56389:CDS	30.0%
ATTATGTGGAGGTAAATCAT+GGG	+	chr3.1:7559654-7559673	MS.gene56389:CDS	30.0%
CAAAAGAAGAACTATATGGT+TGG	+	chr3.1:7558109-7558128	MS.gene56389:CDS	30.0%
CAAACAACAATAAAGGTAGT+AGG	+	chr3.1:7558481-7558500	MS.gene56389:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	7557565	7560405	7557565	ID=MS.gene56389
chr3.1	mRNA	7557565	7560405	7557565	ID=MS.gene56389.t1;Parent=MS.gene56389
chr3.1	exon	7557565	7559710	7557565	ID=MS.gene56389.t1.exon1;Parent=MS.gene56389.t1
chr3.1	CDS	7557565	7559710	7557565	ID=cds.MS.gene56389.t1;Parent=MS.gene56389.t1
chr3.1	exon	7559783	7560405	7559783	ID=MS.gene56389.t1.exon2;Parent=MS.gene56389.t1
chr3.1	CDS	7559783	7560405	7559783	ID=cds.MS.gene56389.t1;Parent=MS.gene56389.t1

Gene Sequence

>MS.gene56389

ATGGCAGAAACTGCAGTAACATTAGCCTTGGGAGAAGTGTTCCAACTTCTTAAGGAAGAAACAAATCTTCTAAGAGGTGTACACAAAGATTTTTTAGACATCAAAGATGAACTTGAAAGCATTCAAATCTTCCTCAAAGATGCAGATAGAAGGGCAGCTGATGAAGCAGAAACCAATGAAGGAATAAGAACATGGGTGAAGCATATGAGAGAAGCATCATTTCGCATTGAAGATGTAATTGACGAATACCTTCGGCTGATCCATACGGCCAATCCTCCTGGACGCCGATCTGTATTCAACAAGATTACAAGCTCAATCAAAACTTTGATTCCCCGTCACAAAATTGCATCAGAGATTCAGGACATCAAGCTGACAATTCACGGAATCAAGGAAAGAAGCGAGAGGTATAACTTTCAAATTTCAAATGAACAAGGATCCTCAAGTAGCAGCAACAGTACCGGAGAGACAGAAAATGGAAGATGGCGTGATCCTCGACTGTCTTCCCTTTTCATTGAAGAAACAGAAATTGTAGGATTTGAAGGCCCAAAAGAAGAACTATATGGTTGGTTATTGGAGGGTGCAGCTGAACGCACAGTGATTTCAGTGGTAGGAATGGGGGGTCTCGGAAAAACCACTCTTGCCAAGCTAGTTTTTGACAGCCAAAAGGTAACAACACAGTTTGATTGTCGAGCTTGCATCGTAGTTTCTCAATCATACACGGTGAGAGGATTGCTGATAAAAATGATGGAGCAATTTTGTCAGGAAACTGAAGACCCTCTTCCAAAGAAGTTACGCAAAATGGATGACAGGTCACTGATTACAGAGGTAAGGAAATACCTAGAACATAAGAGGTATTTGATATTCTTTGATGATGTATGGAAAGAAGATTTTTCCGACCAGATTGAATTTGCTATGCCAAACAACAATAAAGGTAGTAGGATCATAATCACCACTAGAATGATGCATGTTGCAGATTTTTTCAAGAAATCCTTTCAAGTTCATGTTCACAACTTGCAACTTTTGACTCCAAACAAAGCATGGGAACTCTTCTGCAAGAAAGTATTTAGATCTCATCTTGGCGGTCGTTGTCCACCGGAGCTTGAGGCTGTGGCAAAAGAAATTGTTCAAAAGTTCAAGCAACTACCTCTTGCAATTGTGGCCATTTCTGGTCTACTTTCAACAAAATCTAAAACCATGATTGAATGGCAAAAGGTGAGTCAAAATTTGAGCTTGGAGTTGGGACGTAATACCCATTTAACGAGTCTAACAAAGATTTTGTCGCTTAGTTATGATGGCCTGCCTCACTACTTGAAACCATGCATTTTGTATTTTGGTTTATATCCAGAGGATTTTGCTATTAGTCATTGGAGATTAACTCAACAGTGGGCAGCTGAAGGGTTTGTTAAATCTGATGGGAGAAGAACTCCAGAGCAAGTTGCAGAGGAGTACTTATCTGAATTGATTCAGAGAAGTCTAGTCCAAGTCTCGCATGTTAACTTTGAAGGGAAAGTAGATACATGTCAAGTCCATGATTTATTGCGGGAAGTGATCATTAGAAAAATGAAGGATTTGAGTTTCTGCCATTGTGTGCATGATGATGGTGAATCACTTGTGGTTGGGAAAACTAGACGCCTATCAATAACCACTAGCCACAACAATGTGTTGAAGAGCTCTGACATTTCACATTTCCGTGCTATTCATGTTTTTGATAAAAGTGTGTCATTGGAGCATTTCGTGGGCAAACTGTGTTCAAAATCTAGGATTTTGAAGGTACTTGACATTCAAGGTACATCGTTGAATCATATTCCTAAAAATTTGGGGAGTCTTTTTCACTTAAGGTACTTAAACCTAAAGAGTACAAAAATAAAGTTTCTTCCTAAATCAGTTGGTGAGCTACATAACTTAGAGATATTGGATATAAGATACACACTTGTGCGTGAGATACCAAGAGAGATAAACAAGCTCACAAAGCTTCGTCACCTTTTCGCCTTAAACCGTAACTATGAAGAAAAGTATTCACTGTTTGGATTTACATCTGGTGTGCAGATGGAAAAAGGTATTAAAAACATGGCTTCCCTACAAAAGCTTTATTATGTGGAGGTAAATCATGGGGGAGTTGATCTCATTCAAGAGATGAAAATGTTAAGTCAGTTAAGAAGGTTAGGTTTAAGGCATGTAAGAAGATAACATGGGGAGGCCATAAGTGCTGTTATAGTAGAATTGAAACACCTTGAAGATCTTAATATCACTACAATTGGTGAGGATGAAACCATTAACTTGAATTTTGTCTCATCTCCACCCCAACTTCAGGCGCTTCATTTGAAAGCTAAACTAGATACATTGCCTGAATGGATTCCAAAACTTGAGTATCTTGTTGAGATAAAGTTGGCGTTATCTTATTTGAAAAATGATCCGCTGCAGTCACTTAAAAACTTGCCAAATCTATTGAAGTTCGGTCTATGGGACAACGCCTATGATGGTGAAATTTTGCATTTTCAAATTGGAGGGTTTCTAAAGTTGAAGAGACTGAATCTCAGGCGCTTGAATAGGGTAAATTCTATCCTTATAGACGAAGGAACTTTGATCTCTCTTGAATATCTGGACATGGACAGAATCCCACAGCTAAAGGAGGTGCCCTCAGGCATCAGGTCCTTGGATAAACTCAAAGCTATTAAATTCACTGAAATGCCATCTGAATTTGTTGAAAGTATTGATCCAGACAAAGGAAAAGACTACTTGATTATCAAGCATGTCCCTCTTGTATCCATTCATCACTCGAGTGGTCCAAAATTTTATGACTATGCAATTCGCACTATTCACTCGTCTTCCAAGCAGTCATAA

Protein sequence

>MS.gene56389.t1

MAETAVTLALGEVFQLLKEETNLLRGVHKDFLDIKDELESIQIFLKDADRRAADEAETNEGIRTWVKHMREASFRIEDVIDEYLRLIHTANPPGRRSVFNKITSSIKTLIPRHKIASEIQDIKLTIHGIKERSERYNFQISNEQGSSSSSNSTGETENGRWRDPRLSSLFIEETEIVGFEGPKEELYGWLLEGAAERTVISVVGMGGLGKTTLAKLVFDSQKVTTQFDCRACIVVSQSYTVRGLLIKMMEQFCQETEDPLPKKLRKMDDRSLITEVRKYLEHKRYLIFFDDVWKEDFSDQIEFAMPNNNKGSRIIITTRMMHVADFFKKSFQVHVHNLQLLTPNKAWELFCKKVFRSHLGGRCPPELEAVAKEIVQKFKQLPLAIVAISGLLSTKSKTMIEWQKVSQNLSLELGRNTHLTSLTKILSLSYDGLPHYLKPCILYFGLYPEDFAISHWRLTQQWAAEGFVKSDGRRTPEQVAEEYLSELIQRSLVQVSHVNFEGKVDTCQVHDLLREVIIRKMKDLSFCHCVHDDGESLVVGKTRRLSITTSHNNVLKSSDISHFRAIHVFDKSVSLEHFVGKLCSKSRILKVLDIQGTSLNHIPKNLGSLFHLRYLNLKSTKIKFLPKSVGELHNLEILDIRYTLVREIPREINKLTKLRHLFALNRNYEEKYSLFGFTSGVQMEKGIKNMASLQKLYYVEVNHGGVDLIQEMKMLKLKHLEDLNITTIGEDETINLNFVSSPPQLQALHLKAKLDTLPEWIPKLEYLVEIKLALSYLKNDPLQSLKNLPNLLKFGLWDNAYDGEILHFQIGGFLKLKRLNLRRLNRVNSILIDEGTLISLEYLDMDRIPQLKEVPSGIRSLDKLKAIKFTEMPSEFVESIDPDKGKDYLIIKHVPLVSIHHSSGPKFYDYAIRTIHSSSKQS