AlfalfaGEDB | MS.gene70167

M. sativa cultivar XinJiangDaYe / MS.gene70167

KEGG: -
GO: -
PFAM: PF03364.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70167.t1	RHN43172.1	96.7	726	17	2	1	726	24	742	0.00E+00	1374.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70167.t1	A0A396GPY7	96.7	726	17	2	1	726	24	742	0.0e+00	1374.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene70167	0.804652	1.95E-49	-1.69E-46
MS.gene049232	MS.gene70167	0.822039	2.93E-53	-1.69E-46
MS.gene049356	MS.gene70167	0.886309	3.83E-72	-1.69E-46
MS.gene049369	MS.gene70167	0.917668	4.01E-86	-1.69E-46
MS.gene049396	MS.gene70167	0.916781	1.18E-85	-1.69E-46
MS.gene049609	MS.gene70167	0.863348	2.65E-64	-1.69E-46
MS.gene049633	MS.gene70167	0.823086	1.67E-53	-1.69E-46
MS.gene049805	MS.gene70167	0.82236	2.47E-53	-1.69E-46
MS.gene049907	MS.gene70167	0.857181	1.94E-62	-1.69E-46
MS.gene050323	MS.gene70167	0.809961	1.46E-50	-1.69E-46

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70167.t1	MTR_8g094800	96.556	726	18	2	1	726	24	742	0.0	1440
MS.gene70167.t1	MTR_8g094800	95.806	620	19	2	1	620	24	636	0.0	1216
MS.gene70167.t1	MTR_1g085550	35.000	180	101	4	69	233	78	256	3.15e-19	89.0
MS.gene70167.t1	MTR_1g085550	26.768	198	112	6	321	489	71	264	4.69e-13	70.5

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70167.t1	AT5G08720	65.235	722	213	13	23	726	17	718	0.0	901
MS.gene70167.t1	AT4G01650	35.294	187	100	6	67	233	11	196	4.08e-20	89.7
MS.gene70167.t1	AT4G01650	32.934	167	88	6	341	485	38	202	1.16e-17	82.8
MS.gene70167.t1	AT4G01650	35.106	188	103	6	63	233	88	273	1.19e-19	90.5
MS.gene70167.t1	AT4G01650	32.934	167	88	6	341	485	115	279	4.09e-17	82.8
MS.gene70167.t1	AT4G01650	41.045	134	72	4	63	191	88	219	4.21e-18	84.3
MS.gene70167.t1	AT4G01650	36.449	107	59	3	341	438	115	221	2.40e-14	73.6

Showing 1 to 7 of 7 entries

Previous1Next

Find 164 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTTGGTTGTTAA+TGG	0.150554	4.1:+7800913	MS.gene70167:CDS
AAAAGAGTTGGACATAAATT+GGG	0.422170	4.1:+7803322	MS.gene70167:CDS
AAACCCAGAAGCCATTTAGG+TGG	0.657917	4.1:+7799626	MS.gene70167:CDS
AAACCTTCTTTATCCTGACC+AGG	0.545502	4.1:-7800988	None:intergenic
AAAGTGGGGTGGACTTCATG+AGG	0.593784	4.1:+7803130	MS.gene70167:CDS
AAATGATGGTTTGGAATATA+AGG	0.314737	4.1:-7799534	None:intergenic
AACAGCAATTGGGGTATATT+TGG	0.184340	4.1:+7801057	MS.gene70167:CDS
AACCATATCCTTCCAGGAAA+TGG	0.286044	4.1:-7800184	None:intergenic
AAGAGTTCCGGGACTACAGA+GGG	0.615046	4.1:+7802447	MS.gene70167:CDS
AAGCTCCTGTTCGTGATGTA+TGG	0.435936	4.1:+7801290	MS.gene70167:CDS

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGATACATATGCCATG+TGG	-	chr4.1:7803034-7803053	None:intergenic	30.0%
ACATTTCAGCCATTTAAATG+TGG	-	chr4.1:7802202-7802221	None:intergenic	30.0%
CATATTCAGCAACAAATTTC+AGG	-	chr4.1:7802498-7802517	None:intergenic	30.0%
CTATACGAAATCAAAGTCAT+TGG	+	chr4.1:7800055-7800074	MS.gene70167:intron	30.0%
GATTAAATCAATATGCAGGA+AGG	+	chr4.1:7801733-7801752	MS.gene70167:intron	30.0%
GCCAAAACAACTTATGAAAA+TGG	+	chr4.1:7799945-7799964	MS.gene70167:intron	30.0%
GGTTGCCTTAATTCTTAAAA+TGG	+	chr4.1:7801179-7801198	MS.gene70167:intron	30.0%
TCTACTAGCATAAACTCTTT+AGG	+	chr4.1:7799915-7799934	MS.gene70167:intron	30.0%
TGCTAAGCCCAAAATTAAAA+CGG	-	chr4.1:7803058-7803077	None:intergenic	30.0%
TGTCTTGCTTCAACTTATAT+GGG	-	chr4.1:7802060-7802079	None:intergenic	30.0%

Showing 1 to 10 of 266 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	7799467	7803352	7799467	ID=MS.gene70167
chr4.1	mRNA	7799467	7803352	7799467	ID=MS.gene70167.t1;Parent=MS.gene70167
chr4.1	exon	7799467	7799843	7799467	ID=MS.gene70167.t1.exon1;Parent=MS.gene70167.t1
chr4.1	CDS	7799467	7799843	7799467	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7800168	7800288	7800168	ID=MS.gene70167.t1.exon2;Parent=MS.gene70167.t1
chr4.1	CDS	7800168	7800288	7800168	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7800545	7800630	7800545	ID=MS.gene70167.t1.exon3;Parent=MS.gene70167.t1
chr4.1	CDS	7800545	7800630	7800545	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7800732	7801149	7800732	ID=MS.gene70167.t1.exon4;Parent=MS.gene70167.t1
chr4.1	CDS	7800732	7801149	7800732	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7801244	7801344	7801244	ID=MS.gene70167.t1.exon5;Parent=MS.gene70167.t1
chr4.1	CDS	7801244	7801344	7801244	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7801467	7801533	7801467	ID=MS.gene70167.t1.exon6;Parent=MS.gene70167.t1
chr4.1	CDS	7801467	7801533	7801467	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7801751	7801978	7801751	ID=MS.gene70167.t1.exon7;Parent=MS.gene70167.t1
chr4.1	CDS	7801751	7801978	7801751	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7802241	7802699	7802241	ID=MS.gene70167.t1.exon8;Parent=MS.gene70167.t1
chr4.1	CDS	7802241	7802699	7802241	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7802881	7802953	7802881	ID=MS.gene70167.t1.exon9;Parent=MS.gene70167.t1
chr4.1	CDS	7802881	7802953	7802881	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1
chr4.1	exon	7803102	7803352	7803102	ID=MS.gene70167.t1.exon10;Parent=MS.gene70167.t1
chr4.1	CDS	7803102	7803352	7803102	ID=cds.MS.gene70167.t1;Parent=MS.gene70167.t1

Gene Sequence

>MS.gene70167

ATGATCACTACTTGCAGACCTTCTTCTTCTTCTTCTTCAAGAGCTAACCCACTTTCTCTACGCTCTTCCTTATATTCCAAACCATCATTTTTATCTTTGAGTCTCTTTTTCCCTCGCAATTTGCACAAGGGCATTGCTCTCTCCTCAACAACAGTGTGTAAACCCAGAAGCCATTTAGGTGGAAATTTGAATAATGGGCTAGAAGAAGAAGAAGAAGAAGAAGGTGACCGTGAGGTTAACTGTGAGCTTCAAGTGGTTTCTTGGAGGGAACGGAGAGTTAAGGCTGAGATTTCTATCAATGCTGATATTAACTCCGTTTGGAATGCTTTAACTGATTATGAACACCTAGCTGATTTCATACCAAATCTTGTTTGGAGGTAATCCATAATTGATTAACCATAGCTTCATTATAAGGGCATGTTTGGATTGGATTAACTCATTTCAGTTATCTACTAGCATAAACTCTTTAGGATAGCTTGCCAAAACAACTTATGAAAATGGTTTGACTTTATTTTATTTGTTGTTATAGAAATAACCACTTATATGATAAACACTTGATTAAGTTGCTTATACAAACATGGCCAAGTTCTATACGAAATCAAAGTCATTGGTGTAATGATATGACCAAAGAGTCATATGATAAGATTTATGTGAAAAGTGAGTATTTTTATATGCAATATGAGAGTTGTTTTTGTTTTTAGTGGGCGTATTCCTTGCCCATTTCCTGGAAGGATATGGTTAGAGCAAAGAGGATTTCAAAGGGCAATGTATTGGCACATTGAAGCTCGTGTTGTTTTGGATCTTCAAGAATTCCTCAATTCTGTAAGCACATTCTTAAAACATTTGCTGTTGTTTGATTTTGTTACTGCATACTAGAAAAGTAGCAATTAGTTCTATGTGTGACTGAGAAGTGGATAACATTGAAGAGTGGATAGAATTTATGACGTAGAGTACAGAGAATATTAAAATAAATTTTAAAAACTGTATGAACAGAGGGAACTCAGATAACAGAATTAATGATCTACAAGAGAGAACTTCCAACTTTCTAATACTACAAAATTCTTTTTTAATGCTTCAGGAATGGGATCGAGAACTTCATTTTTCAATGGTTGATGGAGACTTTAAGAAGTTTGAGGGAAAATGGTCTGTAAAATCTGGAACAAGGTAGAACCTATGTTTCTTAAAGTTAATACTTACTAAGCAACCATGAATGATATAAATAATCTATGTTTTGATTTTATATCCTTCAATTCTGCTTTTTGCAGGTCATCATCAACTAATTTATCTTATGAGGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTGTCAGATCGGATCTTCCTGTGAATCTACGAGCCTTAGCATATAGAGTTGAAAGGAATCTTTTGGGGAATCAGAAACTTCCCCAGCCAGAAGACGACTTGCATAAAACTTCTTTGGTTGTTAATGGATCTTCTGTCAAAAAGATAAATGGTTCTTTATGTGAAACCGACAAATTGGCACCTGGTCAGGATAAAGAAGGTTTGGACACTTCAATTTCCGGTTCATTGCCTGCGTCTTCCAGTGAGTTAAACAGCAATTGGGGTATATTTGGAAAAGTTTGTAGCCTTGACAAGCCTTGTGTTGTAGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGTAACTTATCTATACTAGATTGTTTATTAGGTTGCCTTAATTCTTAAAATGGGATGTTGTCAAAGTTACCAATAAAAAATATTTTCATGTGAAGGAAAATGGAGGTGTTCATCGTTGTGTCGTTGCAAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGAATGTTATGTCTTCGTATGAGACTCTTCCTGAGTAAGTAATGCGTGTTTCCTTTTTACACTAGAGATATTGAAGAGCATGCTGTAAAAGATTTCTAGGTCATATTTTTCATTTTTCTGACTCAACTTCAATTGACAAAAAAACATTTGTTGCAGGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTTCAGGTACGGACCAATCTGAAAATGAACCAGAGTTAGAACAAGAGAATCTTAACTCTTAACTGTATATTTTCCTGCCACTGTATTATGCTTGCTAGCAATTGTTTTACCATCAAAATCCACTGTTAGTAAAATACATATTTGTATCTCCTAAGCACAATTGCCGATAAAAGTTTGAACTTGTATATGATTGATGTAATTTCTTGATTAAATCAATATGCAGGAAGGGTGTAAAGGCCTGCTTTATATGGTGCTTCATGCTCGTGTGGTGTTAGATTTGTGTGAACAGCTAGAACAAGAGATCAGTTTTGAACAGGCTGAAGGTGACTTCGACTCATTCCATGGAAAATGGACTTTTGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCTGTGGACTCGAAAATGCGCAGAGATACGTTCCTTTCTGAAGCTATCATGGAAGAGGTTTGTCTATAAATATGATTTGGTTGATCTATATCATCAACTTTAGTATTTCATATTGTTTTCACTCGAAATGTTTGGCCCATATAAGTTGAAGCAAGACACATTTATCCATATCTCCTTTTTTTTTTTTTGAAAAAGCTATCCATATCTCCTTTTATGAAAAGAAAGTAAATAACTGTTTTTGTTGGTATTGGATACAATCTTTTGAGGGTAAATCGATCCACATTTAAATGGCTGAAATGTTATAAGTTCTTTGTTTCAGGTCATTTACGAAGATCTGCCATCAAACTTGTGTGCAATAAGAGACTACGTTGAGAACCGGAAAGCATCACAATTTCCTGAAGTTTGTGAGCAGAATACGAATTCAGAACAACAAATTATATCATCTGGCTCTGGAGATGATAGCAACTCTAGTTCAGCTGATGATTTTTCTGATTGTAATGTTCAAAGCTCATCTAATCAAAGGTCAAGAGTTCCGGGACTACAGAGGGATATTGAAGTCCTAAAATCTGAACTCCTGAAATTTGTTGCTGAATATGGTCAGGAAGGGTTTATGCCTATGAGGAAGCAGCTTCGGCTGCATGGAAGAGTGGATATTGAGAAGGCTATAACTCGCATGGGTGGATTCAGAAAGATTGCAACCATAATGGACCTCTCTCTAGCTTACAAATACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCAGGACGAGGTAGACTTCTGCACAAGTTCCATTTTTAGTTGCTACTTGCCAGAATAACAAGCTAAAGTTAATTGACGATGACATGATGAAGGATGGATGTTATGCATCAATGAAATATTAATTCATGATAAAGAACATGTGTAACATCGTTTACAGGTTCAATCATAACATAATTAATTTCGTCATGCAGATAAGTAGATTTCAGAGATGCTGGGGGATGGACCCATCATTTATGCCCAGTAGAAAGTCATTTGAACGAGTTGGTAGGTTGAAATATTCCCTTTCTCAACTTCAATATTTTGTTTGCGTTGCTTACTTTCAAGGATATCGATGTAACATGCCACATGGCATATGTATCTTATTACCGTTTTAATTTTGGGCTTAGCAGTAGATAATGGAATTAACTTGCAGGCCGCTTTGATATTGCACGGGCGCTGGAAAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCTATCTCTCAAGGCAAGGAGAAAAAGAACCAGACAGGACAACAACCTTGGCAAGGATAAGAAAAATGATCACCGAGAATCAGCAGATGTAGATAGTGAGATCAATGCAGCATCTAGACCTTATATTTCTCAAGACACACACAAGTGGCATACAGAACTAAAAGAGTTGGACATAAATTGGGTTGAGTAA

Protein sequence

>MS.gene70167.t1

MITTCRPSSSSSSRANPLSLRSSLYSKPSFLSLSLFFPRNLHKGIALSSTTVCKPRSHLGGNLNNGLEEEEEEEGDREVNCELQVVSWRERRVKAEISINADINSVWNALTDYEHLADFIPNLVWSGRIPCPFPGRIWLEQRGFQRAMYWHIEARVVLDLQEFLNSEWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERNLLGNQKLPQPEDDLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGSLPASSSELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIRDYVENRKASQFPEVCEQNTNSEQQIISSGSGDDSNSSSADDFSDCNVQSSSNQRSRVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIMDLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKWGGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDTHKWHTELKELDINWVE