AlfalfaGEDB | MS.gene067713

M. sativa cultivar XinJiangDaYe / MS.gene067713

KEGG: K12449
GO: GO:0003674 GO:0003824 GO:0005488 GO:0048037 GO:0050662
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067713.t1	XP_003606129.1	98.3	345	6	0	1	345	1	345	2.70E-201	711.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067713.t1	Q9SGE0	75.5	347	82	2	2	345	6	352	2.4e-161	569.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067713.t1	G7JIF7	98.3	345	6	0	1	345	1	345	2.0e-201	711.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene067713	0.869875	2.23E-66	-1.69E-46
MS.gene049217	MS.gene067713	0.807302	5.40E-50	-1.69E-46
MS.gene049222	MS.gene067713	0.877765	4.83E-69	-1.69E-46
MS.gene049232	MS.gene067713	0.913075	9.36E-84	-1.69E-46
MS.gene049285	MS.gene067713	0.859321	4.48E-63	-1.69E-46
MS.gene049320	MS.gene067713	0.860407	2.11E-63	-1.69E-46
MS.gene049396	MS.gene067713	0.859635	3.61E-63	-1.69E-46
MS.gene049552	MS.gene067713	0.810746	9.89E-51	-1.69E-46
MS.gene049609	MS.gene067713	0.870919	1.01E-66	-1.69E-46
MS.gene049633	MS.gene067713	0.876002	1.97E-68	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067713.t1	MTR_4g053420	98.261	345	6	0	1	345	1	345	0.0	712
MS.gene067713.t1	MTR_4g056100	76.081	347	80	2	3	346	8	354	0.0	574
MS.gene067713.t1	MTR_1g107455	74.855	346	84	2	3	345	8	353	0.0	556
MS.gene067713.t1	MTR_4g056100	77.815	302	64	2	3	301	8	309	0.0	511
MS.gene067713.t1	MTR_1g108530	70.809	346	80	3	3	345	8	335	0.0	508
MS.gene067713.t1	MTR_4g056100	77.778	270	57	2	3	269	8	277	3.22e-162	456
MS.gene067713.t1	MTR_2g041340	61.633	245	67	3	3	244	8	228	5.74e-103	303
MS.gene067713.t1	MTR_4g045737	56.989	93	39	1	3	94	8	100	9.68e-30	110
MS.gene067713.t1	MTR_2g096660	29.123	285	164	9	14	296	38	286	3.35e-25	105
MS.gene067713.t1	MTR_4g063600	28.421	285	166	9	14	296	32	280	2.31e-24	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067713.t1	AT1G08200	75.504	347	82	2	2	345	6	352	0.0	568
MS.gene067713.t1	AT2G27860	74.640	347	85	2	2	345	6	352	0.0	558
MS.gene067713.t1	AT3G46440	28.421	285	166	8	14	296	29	277	4.53e-24	101
MS.gene067713.t1	AT3G46440	28.421	285	166	8	14	296	29	277	4.53e-24	101
MS.gene067713.t1	AT5G59290	28.421	285	166	9	14	296	1	249	6.06e-24	100
MS.gene067713.t1	AT5G59290	28.421	285	166	9	14	296	23	271	1.14e-23	100
MS.gene067713.t1	AT5G59290	28.421	285	166	9	14	296	30	278	1.16e-23	100
MS.gene067713.t1	AT5G59290	29.123	285	164	10	14	296	45	293	1.87e-23	100
MS.gene067713.t1	AT2G28760	29.123	285	164	10	14	296	31	279	2.53e-23	99.8
MS.gene067713.t1	AT2G28760	29.123	285	164	10	14	296	31	279	2.53e-23	99.8

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Find 82 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGACACATCTTTAATG+TGG	0.547790	4.2:-48936289	MS.gene067713:CDS
AACTCGATACGGTTAGCCCA+AGG	0.640625	4.2:+48937839	None:intergenic
AAGCTTTGACGAGAGTTTCA+AGG	0.460030	4.2:+48937786	None:intergenic
AAGGTATATGCAAAGGTGGC+TGG	0.511233	4.2:-48936127	MS.gene067713:CDS
AAGGTTATGATGACAGTGAT+AGG	0.529228	4.2:-48936048	MS.gene067713:CDS
AATGGACACATCTTTAATGT+GGG	0.590992	4.2:-48936288	MS.gene067713:CDS
AATGGACTTCATTCCTGGTG+TGG	0.645922	4.2:-48936647	MS.gene067713:CDS
AATTGGTAGCTTTCTGCCTG+AGG	0.575752	4.2:-48937379	MS.gene067713:CDS
ACAATCATCACCAGGCAGCT+TGG	0.544555	4.2:-48936010	MS.gene067713:intron
ACTAGCTGAGCTTATGATAA+AGG	0.394087	4.2:-48936235	MS.gene067713:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAAAAACCTACCACC+GGG	+	chr4.2:48936142-48936161	None:intergenic	30.0%
AAATGGACACATCTTTAATG+TGG	-	chr4.2:48937416-48937435	MS.gene067713:CDS	30.0%
AATGGACACATCTTTAATGT+GGG	-	chr4.2:48937417-48937436	MS.gene067713:CDS	30.0%
ATGGTTTCAATTTGACGTTT+CGG	-	chr4.2:48936891-48936910	MS.gene067713:intron	30.0%
ATGTCTGATGTTGATATTGA+AGG	+	chr4.2:48937958-48937977	None:intergenic	30.0%
CAAAATAAAAAACCTACCAC+CGG	+	chr4.2:48936143-48936162	None:intergenic	30.0%
CTATATCAAAGATGCAATTG+AGG	-	chr4.2:48937284-48937303	MS.gene067713:intron	30.0%
GATATAGAGAAAAGTTCTCT+GGG	+	chr4.2:48937271-48937290	None:intergenic	30.0%
TACAGCAAGAATCTCTTTAT+GGG	-	chr4.2:48936361-48936380	MS.gene067713:intron	30.0%
TCTTTGAGCTTGTAATATTG+AGG	+	chr4.2:48936634-48936653	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	48935689	48938038	48935689	ID=MS.gene067713
chr4.2	mRNA	48935689	48938038	48935689	ID=MS.gene067713.t1;Parent=MS.gene067713
chr4.2	exon	48937778	48938038	48937778	ID=MS.gene067713.t1.exon1;Parent=MS.gene067713.t1
chr4.2	CDS	48937778	48938038	48937778	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48937582	48937674	48937582	ID=MS.gene067713.t1.exon2;Parent=MS.gene067713.t1
chr4.2	CDS	48937582	48937674	48937582	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48937368	48937469	48937368	ID=MS.gene067713.t1.exon3;Parent=MS.gene067713.t1
chr4.2	CDS	48937368	48937469	48937368	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48936985	48937099	48936985	ID=MS.gene067713.t1.exon4;Parent=MS.gene067713.t1
chr4.2	CDS	48936985	48937099	48936985	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48936600	48936733	48936600	ID=MS.gene067713.t1.exon5;Parent=MS.gene067713.t1
chr4.2	CDS	48936600	48936733	48936600	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48936404	48936505	48936404	ID=MS.gene067713.t1.exon6;Parent=MS.gene067713.t1
chr4.2	CDS	48936404	48936505	48936404	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48936236	48936328	48936236	ID=MS.gene067713.t1.exon7;Parent=MS.gene067713.t1
chr4.2	CDS	48936236	48936328	48936236	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48936011	48936146	48936011	ID=MS.gene067713.t1.exon8;Parent=MS.gene067713.t1
chr4.2	CDS	48936011	48936146	48936011	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1
chr4.2	exon	48935689	48935753	48935689	ID=MS.gene067713.t1.exon9;Parent=MS.gene067713.t1
chr4.2	CDS	48935689	48935753	48935689	ID=cds.MS.gene067713.t1;Parent=MS.gene067713.t1

Gene Sequence

>MS.gene067713

ATGGATCGAGTGAACCTGGACGGGAAACCAATCACGCCGATCTCAATATGCATGATCGGCGGTGGAGGATTCATCGGATCACACCTCACCGAAAAGCTGATGTCCGAAACATCTCACAAAGCCATAGTCATTGATGTCTCCTCTGAGAAAATCAATCATCTCCTTGATAAGTCTCATCCTTGGGCTAACCGTATCGAGTTTCATCAGATGAATATCAAGAACGATTCTCGCCTTGAAACTCTCGTCAAAGCTTCTGATCTCGTATATATTCTTTCTTTTCGATCTTCTTGTTCCGTTTTTTATTTACTTTTTTGAATCATTTTTCCATTTTTATTTATTTTTGATGATGTTGTTTTTGGTTTAGACTATTAATCTTGCTGCGATTTGTACACCGGCGGATTATAACACGCGGCCTTTGGATACTATTTACAGTAATTTCATCGATGCGATCCCGGTGGTAGGTTTTTTATTTTGGTTTATTTTGTGAAATTTCATTGACGTTCTTTGTATATACTATTTGATAATTTCATGTTTTTATGAAATCTGGTTGATGGTGTAATAATATGCAGATTAAATTTTGTACTGAGAACAATAAGCGTTTGATTCACTTTTCTACGTGTGAGGTCTTTGGGAAGACAATTGGTAGCTTTCTGCCTGAGGAGTATAGAAAGGTACAGCAAGAATCTCTTTATGGGCAAGTTCATTTCATGTAAAAAATTTAAAACATAACATGGACACGATATTGACACGTAGATAATCGTAATAATTTAAGAAAATGAGAGTGAATGAATGTAATCATATTTTTCGGTGTCATGATGTTGGACACTTACATGTGTCGGACACCAAAGATATGTTTAATTTTTAGTGTCGATGCTACGTAAATCAAATATCATATTCTGATATTTATTTGTTTTCTGAACACAAATTTGCATCATGCAGGAACCTCAATATTACAAGCTCAAAGAAGATGTGAGTCCTTGTATTTTTGGTCCAGTTCATAAACAGAGATGGTCTTATGCATGTGCAAAGCAGATGACAGACAGGCTCATTTATGGTAAACAAAGGAATTCTGTTTTTCTTTTGATTGCAATCTATGAATCAGTGACACATACACCAGACACACATACTGACATTGACACATCGACACAAGTTAAGAAAATAGAAGTAATTAAATGTATATATGTCAGTGTCAGACACCTTACATGGTTTCAATTTGACGTTTCGGTGCTACATAGATTGTGATTGTTATGATAAGATTTTCTTGTTCTTTTCCTTAACTGACTCTTGATATTAATAAATCTATAGCTGAGCATGCGGAGAATGGACTCAAGTTCACTATTGTGAGACCTTATAACTGGATTGGACCAAGAATGGACTTCATTCCTGGTGTGGATGGTCCAAGTGATGGTGTCCCAAGAGTTTTAGCTTGTTTCAGTAATGTAACATCATCTACCTGCTTCTGTTTCTTGTTCACGTCTTCATATTTTTAATATATATACACCGCTGTTTTTTTCACAAAGCTTCTTGCTCTAGAATCTCCTGCGTGGCGAGCCTCTCAAACTTGTTGATGGTGGACATTCCCAGAGAACTTTTCTCTATATCAAAGATGCAATTGAGGCTGTTTTGTTAATGATTGTAAGTTCAGAAGTAAACTTCTATGTTTCACATATTGAGATTATACTAATGTATATGCTATCATGTAACATGCAGGATAACCCTGATAGAGCAAATGGACACATCTTTAATGTGGGAAACCCAGATAATGAAGTATCTGTTAAGCAACTAGCTGAGCTTATGATAAAGGTAGCTTCTAAATTAGTTTTTAGATAGGTTATTGCCTTTGTTTTTAAAGAGAAATAAACAACCTTGGCTCATTTTCTTTTTTCATTAAGGTATATGCAAAGGTGGCTGGTGTACCTCCCTCTAGTCTATCAACTCTGGATGTGAGTTCAGAAGTTTTCTATGGCAAAGGTTATGATGACAGTGATAGGCGTATCCCTGACATGACAATCATCACCAGGCAGCTTGGTATTCTGTCATTAATTCATTTGTATCTATGCATTGTTTGGTATCAAAACGAGTTTGAAGAAATCACAATAGCACCGTGATTTTGTTGAAGCTTCAAATTGTTGCTTTTGATAAAACCACTGTTGCACATTGTGATTTTGTCAAACTCATTGTCAGTCTAAACATTCTTCTTACTGTTTATTCTTGTGATTTTAGGTTGGAAGCCAAAGACATCTCTTGATGAACTGTTGGATTCTACCCTTCAATATCAACATCAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCTTCAACTTGAGCAACTCTGCAAGTTGA

Protein sequence

>MS.gene067713.t1

MDRVNLDGKPITPISICMIGGGGFIGSHLTEKLMSETSHKAIVIDVSSEKINHLLDKSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKEPQYYKLKEDVSPCIFGPVHKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSDGVPRVLACFSNNLLRGEPLKLVDGGHSQRTFLYIKDAIEAVLLMIDNPDRANGHIFNVGNPDNEVSVKQLAELMIKVYAKVAGVPPSSLSTLDVSSEVFYGKGYDDSDRRIPDMTIITRQLDIFSCYQERTLKTFNLSNSAS