Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48649.t1 | XP_013455235.1 | 96.4 | 248 | 8 | 1 | 1 | 248 | 23 | 269 | 3.20E-129 | 471.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48649.t1 | Q9SMS0 | 59.4 | 229 | 82 | 3 | 20 | 247 | 28 | 246 | 1.4e-69 | 264.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48649.t1 | A0A072UIK1 | 96.4 | 248 | 8 | 1 | 1 | 248 | 23 | 269 | 2.3e-129 | 471.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene48649 | 0.835074 | 2.07E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene48649 | 0.866492 | 2.74E-65 | -1.69E-46 |
| MS.gene049232 | MS.gene48649 | 0.896229 | 4.51E-76 | -1.69E-46 |
| MS.gene049285 | MS.gene48649 | 0.839626 | 1.42E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene48649 | 0.846985 | 1.54E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene48649 | 0.814515 | 1.48E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene48649 | 0.906622 | 1.22E-80 | -1.69E-46 |
| MS.gene049552 | MS.gene48649 | 0.82626 | 2.99E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene48649 | 0.873673 | 1.22E-67 | -1.69E-46 |
| MS.gene049633 | MS.gene48649 | 0.842179 | 3.03E-58 | -1.69E-46 |
| MS.gene049656 | MS.gene48649 | 0.833673 | 4.66E-56 | -1.69E-46 |
| MS.gene049657 | MS.gene48649 | 0.801119 | 1.05E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene48649 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene049865 | MS.gene48649 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene48649 | 0.867201 | 1.63E-65 | -1.69E-46 |
| MS.gene050170 | MS.gene48649 | 0.891447 | 3.94E-74 | -1.69E-46 |
| MS.gene050216 | MS.gene48649 | 0.832689 | 8.19E-56 | -1.69E-46 |
| MS.gene050323 | MS.gene48649 | 0.895788 | 6.87E-76 | -1.69E-46 |
| MS.gene050381 | MS.gene48649 | -0.800742 | 1.25E-48 | -1.69E-46 |
| MS.gene050496 | MS.gene48649 | 0.873441 | 1.47E-67 | -1.69E-46 |
| MS.gene050499 | MS.gene48649 | 0.84328 | 1.54E-58 | -1.69E-46 |
| MS.gene050502 | MS.gene48649 | 0.919722 | 3.15E-87 | -1.69E-46 |
| MS.gene050504 | MS.gene48649 | 0.846278 | 2.40E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene48649 | 0.830503 | 2.83E-55 | -1.69E-46 |
| MS.gene050520 | MS.gene48649 | 0.833985 | 3.89E-56 | -1.69E-46 |
| MS.gene050538 | MS.gene48649 | 0.837558 | 4.84E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene48649 | 0.842162 | 3.06E-58 | -1.69E-46 |
| MS.gene050593 | MS.gene48649 | 0.84339 | 1.44E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene48649 | 0.836466 | 9.20E-57 | -1.69E-46 |
| MS.gene050662 | MS.gene48649 | 0.81588 | 7.37E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene48649 | 0.832747 | 7.92E-56 | -1.69E-46 |
| MS.gene050697 | MS.gene48649 | 0.851346 | 9.42E-61 | -1.69E-46 |
| MS.gene050699 | MS.gene48649 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene48649 | 0.89179 | 2.88E-74 | -1.69E-46 |
| MS.gene050772 | MS.gene48649 | 0.880789 | 4.11E-70 | -1.69E-46 |
| MS.gene05080 | MS.gene48649 | 0.885524 | 7.55E-72 | -1.69E-46 |
| MS.gene05081 | MS.gene48649 | 0.828382 | 9.27E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene48649 | 0.895925 | 6.03E-76 | -1.69E-46 |
| MS.gene050871 | MS.gene48649 | 0.898483 | 5.08E-77 | -1.69E-46 |
| MS.gene050904 | MS.gene48649 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene48649 | 0.887076 | 1.96E-72 | -1.69E-46 |
| MS.gene050986 | MS.gene48649 | 0.845431 | 4.08E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene48649 | 0.814943 | 1.19E-51 | -1.69E-46 |
| MS.gene05118 | MS.gene48649 | 0.813508 | 2.47E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene48649 | 0.845828 | 3.18E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene48649 | 0.820225 | 7.68E-53 | -1.69E-46 |
| MS.gene051509 | MS.gene48649 | 0.877193 | 7.64E-69 | -1.69E-46 |
| MS.gene051551 | MS.gene48649 | 0.839537 | 1.49E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene48649 | 0.804869 | 1.76E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene48649 | 0.844764 | 6.18E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene48649 | 0.859162 | 5.01E-63 | -1.69E-46 |
| MS.gene051874 | MS.gene48649 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene051941 | MS.gene48649 | 0.855013 | 8.39E-62 | -1.69E-46 |
| MS.gene052066 | MS.gene48649 | 0.853423 | 2.41E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene48649 | 0.88256 | 9.40E-71 | -1.69E-46 |
| MS.gene052346 | MS.gene48649 | 0.871105 | 8.80E-67 | -1.69E-46 |
| MS.gene052414 | MS.gene48649 | 0.854107 | 1.53E-61 | -1.69E-46 |
| MS.gene052421 | MS.gene48649 | 0.809659 | 1.70E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene48649 | 0.865223 | 6.90E-65 | -1.69E-46 |
| MS.gene052486 | MS.gene48649 | 0.865049 | 7.83E-65 | -1.69E-46 |
| MS.gene052501 | MS.gene48649 | 0.82007 | 8.33E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene48649 | 0.859344 | 4.41E-63 | -1.69E-46 |
| MS.gene052504 | MS.gene48649 | 0.83181 | 1.35E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene48649 | 0.816575 | 5.15E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene48649 | 0.847765 | 9.40E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene48649 | 0.830984 | 2.16E-55 | -1.69E-46 |
| MS.gene052822 | MS.gene48649 | 0.848529 | 5.78E-60 | -1.69E-46 |
| MS.gene052823 | MS.gene48649 | 0.859251 | 4.71E-63 | -1.69E-46 |
| MS.gene052825 | MS.gene48649 | 0.849909 | 2.39E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene48649 | 0.872141 | 3.99E-67 | -1.69E-46 |
| MS.gene052982 | MS.gene48649 | 0.827415 | 1.58E-54 | -1.69E-46 |
| MS.gene052999 | MS.gene48649 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene053117 | MS.gene48649 | 0.809414 | 1.91E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene48649 | 0.871291 | 7.64E-67 | -1.69E-46 |
| MS.gene053207 | MS.gene48649 | 0.834616 | 2.70E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene48649 | 0.860164 | 2.50E-63 | -1.69E-46 |
| MS.gene053286 | MS.gene48649 | 0.862061 | 6.61E-64 | -1.69E-46 |
| MS.gene053318 | MS.gene48649 | 0.840315 | 9.36E-58 | -1.69E-46 |
| MS.gene053436 | MS.gene48649 | 0.893822 | 4.39E-75 | -1.69E-46 |
| MS.gene053449 | MS.gene48649 | 0.819683 | 1.02E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene48649 | 0.853395 | 2.46E-61 | -1.69E-46 |
| MS.gene053480 | MS.gene48649 | 0.815998 | 6.94E-52 | -1.69E-46 |
| MS.gene053505 | MS.gene48649 | 0.827419 | 1.58E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene48649 | 0.924285 | 8.64E-90 | -1.69E-46 |
| MS.gene053626 | MS.gene48649 | 0.911752 | 4.26E-83 | -1.69E-46 |
| MS.gene053633 | MS.gene48649 | 0.83633 | 9.97E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene48649 | 0.863459 | 2.45E-64 | -1.69E-46 |
| MS.gene053912 | MS.gene48649 | 0.814645 | 1.39E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene48649 | 0.839695 | 1.36E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene48649 | 0.86692 | 2.00E-65 | -1.69E-46 |
| MS.gene054408 | MS.gene48649 | 0.861248 | 1.17E-63 | -1.69E-46 |
| MS.gene054595 | MS.gene48649 | 0.886688 | 2.75E-72 | -1.69E-46 |
| MS.gene054600 | MS.gene48649 | 0.839721 | 1.34E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene48649 | 0.828081 | 1.10E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene48649 | -0.817184 | 3.76E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene48649 | 0.833639 | 4.75E-56 | -1.69E-46 |
| MS.gene054927 | MS.gene48649 | 0.84486 | 5.82E-59 | -1.69E-46 |
| MS.gene05494 | MS.gene48649 | 0.847801 | 9.19E-60 | -1.69E-46 |
| MS.gene054954 | MS.gene48649 | 0.84909 | 4.04E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene48649 | 0.834925 | 2.26E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene48649 | 0.877278 | 7.14E-69 | -1.69E-46 |
| MS.gene055289 | MS.gene48649 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene48649 | 0.837243 | 5.83E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene48649 | 0.841321 | 5.10E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene48649 | 0.866648 | 2.45E-65 | -1.69E-46 |
| MS.gene055629 | MS.gene48649 | 0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene055722 | MS.gene48649 | 0.849217 | 3.73E-60 | -1.69E-46 |
| MS.gene055741 | MS.gene48649 | 0.860186 | 2.46E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene48649 | 0.853065 | 3.06E-61 | -1.69E-46 |
| MS.gene055748 | MS.gene48649 | 0.841673 | 4.12E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene48649 | 0.870381 | 1.52E-66 | -1.69E-46 |
| MS.gene055751 | MS.gene48649 | 0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene48649 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene48649 | 0.884227 | 2.30E-71 | -1.69E-46 |
| MS.gene055909 | MS.gene48649 | 0.851468 | 8.70E-61 | -1.69E-46 |
| MS.gene055911 | MS.gene48649 | 0.849537 | 3.03E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene48649 | 0.82857 | 8.35E-55 | -1.69E-46 |
| MS.gene056040 | MS.gene48649 | 0.876124 | 1.79E-68 | -1.69E-46 |
| MS.gene056046 | MS.gene48649 | 0.840142 | 1.04E-57 | -1.69E-46 |
| MS.gene056166 | MS.gene48649 | 0.920912 | 7.01E-88 | -1.69E-46 |
| MS.gene056374 | MS.gene48649 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene48649 | 0.84201 | 3.36E-58 | -1.69E-46 |
| MS.gene056422 | MS.gene48649 | 0.88749 | 1.36E-72 | -1.69E-46 |
| MS.gene056446 | MS.gene48649 | 0.884967 | 1.22E-71 | -1.69E-46 |
| MS.gene056448 | MS.gene48649 | 0.848328 | 6.57E-60 | -1.69E-46 |
| MS.gene056504 | MS.gene48649 | 0.896287 | 4.26E-76 | -1.69E-46 |
| MS.gene056510 | MS.gene48649 | 0.860466 | 2.03E-63 | -1.69E-46 |
| MS.gene056511 | MS.gene48649 | 0.824168 | 9.34E-54 | -1.69E-46 |
| MS.gene05664 | MS.gene48649 | 0.808106 | 3.64E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene48649 | 0.848842 | 4.74E-60 | -1.69E-46 |
| MS.gene05666 | MS.gene48649 | 0.828214 | 1.02E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene48649 | 0.804487 | 2.11E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene48649 | 0.84268 | 2.23E-58 | -1.69E-46 |
| MS.gene056947 | MS.gene48649 | 0.811991 | 5.31E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene48649 | 0.858162 | 9.95E-63 | -1.69E-46 |
| MS.gene057076 | MS.gene48649 | 0.863956 | 1.72E-64 | -1.69E-46 |
| MS.gene057086 | MS.gene48649 | 0.886537 | 3.14E-72 | -1.69E-46 |
| MS.gene057331 | MS.gene48649 | 0.842896 | 1.95E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene48649 | 0.826315 | 2.90E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene48649 | 0.807257 | 5.52E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene48649 | 0.867678 | 1.15E-65 | -1.69E-46 |
| MS.gene057831 | MS.gene48649 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene057856 | MS.gene48649 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene48649 | 0.811458 | 6.93E-51 | -1.69E-46 |
| MS.gene057876 | MS.gene48649 | 0.837753 | 4.32E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene48649 | 0.909617 | 4.67E-82 | -1.69E-46 |
| MS.gene058120 | MS.gene48649 | 0.83932 | 1.70E-57 | -1.69E-46 |
| MS.gene058130 | MS.gene48649 | 0.868472 | 6.37E-66 | -1.69E-46 |
| MS.gene058157 | MS.gene48649 | 0.851591 | 8.03E-61 | -1.69E-46 |
| MS.gene058173 | MS.gene48649 | -0.802811 | 4.70E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene48649 | -0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene058338 | MS.gene48649 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene48649 | 0.898773 | 3.82E-77 | -1.69E-46 |
| MS.gene058419 | MS.gene48649 | 0.841892 | 3.61E-58 | -1.69E-46 |
| MS.gene058420 | MS.gene48649 | 0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene48649 | 0.835368 | 1.75E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene48649 | 0.811032 | 8.57E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene48649 | 0.833926 | 4.03E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene48649 | 0.846114 | 2.66E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene48649 | 0.830094 | 3.56E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene48649 | 0.832369 | 9.83E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene48649 | 0.854301 | 1.35E-61 | -1.69E-46 |
| MS.gene059129 | MS.gene48649 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene05913 | MS.gene48649 | 0.853092 | 3.00E-61 | -1.69E-46 |
| MS.gene059305 | MS.gene48649 | 0.842834 | 2.03E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene48649 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene48649 | 0.891259 | 4.68E-74 | -1.69E-46 |
| MS.gene059368 | MS.gene48649 | 0.86379 | 1.94E-64 | -1.69E-46 |
| MS.gene059517 | MS.gene48649 | 0.848428 | 6.17E-60 | -1.69E-46 |
| MS.gene059667 | MS.gene48649 | 0.913313 | 7.12E-84 | -1.69E-46 |
| MS.gene059677 | MS.gene48649 | 0.807023 | 6.19E-50 | -1.69E-46 |
| MS.gene059680 | MS.gene48649 | 0.860783 | 1.62E-63 | -1.69E-46 |
| MS.gene059711 | MS.gene48649 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene48649 | 0.850866 | 1.29E-60 | -1.69E-46 |
| MS.gene059801 | MS.gene48649 | 0.816177 | 6.33E-52 | -1.69E-46 |
| MS.gene059837 | MS.gene48649 | 0.840358 | 9.12E-58 | -1.69E-46 |
| MS.gene059865 | MS.gene48649 | 0.889525 | 2.24E-73 | -1.69E-46 |
| MS.gene05995 | MS.gene48649 | 0.801368 | 9.31E-49 | -1.69E-46 |
| MS.gene05996 | MS.gene48649 | 0.804427 | 2.17E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene48649 | 0.886322 | 3.78E-72 | -1.69E-46 |
| MS.gene06027 | MS.gene48649 | 0.809477 | 1.86E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene48649 | 0.876872 | 9.88E-69 | -1.69E-46 |
| MS.gene060482 | MS.gene48649 | 0.868388 | 6.78E-66 | -1.69E-46 |
| MS.gene060593 | MS.gene48649 | -0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene48649 | -0.810645 | 1.04E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene48649 | 0.810433 | 1.16E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene48649 | 0.828675 | 7.88E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene48649 | 0.897961 | 8.46E-77 | -1.69E-46 |
| MS.gene06077 | MS.gene48649 | 0.868673 | 5.48E-66 | -1.69E-46 |
| MS.gene060804 | MS.gene48649 | 0.803505 | 3.38E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene48649 | 0.876408 | 1.43E-68 | -1.69E-46 |
| MS.gene060837 | MS.gene48649 | 0.858784 | 6.49E-63 | -1.69E-46 |
| MS.gene06092 | MS.gene48649 | 0.849546 | 3.02E-60 | -1.69E-46 |
| MS.gene06097 | MS.gene48649 | 0.900331 | 8.16E-78 | -1.69E-46 |
| MS.gene060982 | MS.gene48649 | 0.895432 | 9.64E-76 | -1.69E-46 |
| MS.gene061218 | MS.gene48649 | 0.801426 | 9.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48649.t1 | MTR_4g032805 | 96.371 | 248 | 8 | 1 | 1 | 248 | 23 | 269 | 0.0 | 498 |
| MS.gene48649.t1 | MTR_2g097690 | 50.000 | 62 | 29 | 1 | 109 | 170 | 77 | 136 | 3.52e-12 | 63.9 |
| MS.gene48649.t1 | MTR_5g022180 | 36.264 | 91 | 55 | 2 | 87 | 176 | 53 | 141 | 7.03e-12 | 62.4 |
| MS.gene48649.t1 | MTR_2g097690 | 50.000 | 64 | 30 | 1 | 107 | 170 | 75 | 136 | 1.34e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48649.t1 | AT4G09350 | 59.389 | 229 | 82 | 3 | 20 | 247 | 28 | 246 | 8.25e-96 | 281 |
| MS.gene48649.t1 | AT5G59610 | 49.231 | 65 | 31 | 1 | 105 | 169 | 71 | 133 | 2.68e-11 | 62.4 |
| MS.gene48649.t1 | AT5G59610 | 49.231 | 65 | 31 | 1 | 105 | 169 | 71 | 133 | 6.21e-11 | 61.6 |
| MS.gene48649.t1 | AT5G59610 | 49.231 | 65 | 31 | 1 | 105 | 169 | 71 | 133 | 6.21e-11 | 61.6 |
| MS.gene48649.t1 | AT5G59610 | 49.231 | 65 | 31 | 1 | 105 | 169 | 71 | 133 | 6.88e-11 | 61.2 |
| MS.gene48649.t1 | AT5G59610 | 49.231 | 65 | 31 | 1 | 105 | 169 | 71 | 133 | 6.88e-11 | 61.2 |
Find 39 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCACCCAAAAGCTTCTT+AGG | 0.196506 | 4.3:-67611583 | None:intergenic |
| CTACTATTCAATCCAATCTT+AGG | 0.223430 | 4.3:+67611349 | MS.gene48649:CDS |
| GAATATTTGTGCAGATTCTT+AGG | 0.256272 | 4.3:+67612310 | MS.gene48649:intron |
| TCTTATTCTTCTTATTGTTT+TGG | 0.269689 | 4.3:-67611377 | None:intergenic |
| GGAGAAACCTAAGAAGCTTT+TGG | 0.298843 | 4.3:+67611576 | MS.gene48649:CDS |
| TGCATTTGTTTGTTGCTGTT+TGG | 0.332246 | 4.3:-67611551 | None:intergenic |
| ATTGCTTCTACATCAGCTTC+TGG | 0.336747 | 4.3:-67612340 | None:intergenic |
| GCAAGTTCATGCTTCTACTA+AGG | 0.365942 | 4.3:+67611441 | MS.gene48649:CDS |
| GAAACTGAAAATAAAATTAG+AGG | 0.366458 | 4.3:+67612543 | MS.gene48649:CDS |
| AGAGGGAGTGAAGTTGTGTC+TGG | 0.393350 | 4.3:-67612400 | None:intergenic |
| AAGCAATCAAAGTAGCATTC+AGG | 0.395851 | 4.3:+67612356 | MS.gene48649:CDS |
| AAAGTAGAAGATTCTATGAT+TGG | 0.404469 | 4.3:+67612485 | MS.gene48649:CDS |
| TTCTTCAAGGCTACCTCATA+AGG | 0.409509 | 4.3:-67612568 | None:intergenic |
| CAAACTGTAGTGAGAGTTTG+AGG | 0.431351 | 4.3:-67611419 | None:intergenic |
| GGATTGAATAGTAGAATTTG+TGG | 0.442017 | 4.3:-67611340 | None:intergenic |
| AACAGGTTCATAATTCTTCA+AGG | 0.442631 | 4.3:-67612581 | None:intergenic |
| CCAAGACGATCAACCATGTC+TGG | 0.451377 | 4.3:-67612604 | None:intergenic |
| CGATCAACCATGTCTGGAAC+AGG | 0.460674 | 4.3:-67612598 | None:intergenic |
| GATGATGAAGGTTGGATTGG+AGG | 0.480496 | 4.3:+67611523 | MS.gene48649:CDS |
| AATAGTAGAATTTGTGGAGA+AGG | 0.498829 | 4.3:-67611334 | None:intergenic |
| AAAATTAGAGGATCCTTATG+AGG | 0.498846 | 4.3:+67612555 | MS.gene48649:CDS |
| TACATGAGTGATACAGCATA+TGG | 0.500284 | 4.3:-67612698 | None:intergenic |
| AATGATGATGAAGGTTGGAT+TGG | 0.510553 | 4.3:+67611520 | MS.gene48649:CDS |
| TGGATTCTTGTGTCAACTCC+AGG | 0.515932 | 4.3:-67611490 | None:intergenic |
| GGGAGAATGATGATGAAGGT+TGG | 0.524754 | 4.3:+67611515 | MS.gene48649:CDS |
| CTTCATCATCATTCTCCCAA+TGG | 0.525735 | 4.3:-67611510 | None:intergenic |
| GACTTGCAACTTCTTGAGCA+AGG | 0.527830 | 4.3:-67612510 | None:intergenic |
| GACATGGTTGATCGTCTTGG+TGG | 0.530101 | 4.3:+67612607 | MS.gene48649:CDS |
| CCAGACATGGTTGATCGTCT+TGG | 0.532935 | 4.3:+67612604 | MS.gene48649:CDS |
| AGTTGACACAAGAATCCATT+GGG | 0.545872 | 4.3:+67611495 | MS.gene48649:CDS |
| TTATGAACCTGTTCCAGACA+TGG | 0.570153 | 4.3:+67612591 | MS.gene48649:CDS |
| ACTTGCAACTTCTTGAGCAA+GGG | 0.574767 | 4.3:-67612509 | None:intergenic |
| AGCATTCAGGAAACTTTCAA+AGG | 0.585269 | 4.3:+67612369 | MS.gene48649:CDS |
| ACATGGTTGATCGTCTTGGT+GGG | 0.606623 | 4.3:+67612608 | MS.gene48649:CDS |
| CATTGGGAGAATGATGATGA+AGG | 0.623650 | 4.3:+67611511 | MS.gene48649:CDS |
| GAGTTGACACAAGAATCCAT+TGG | 0.644255 | 4.3:+67611494 | MS.gene48649:CDS |
| ACAGCAACAAACAAATGCAG+AGG | 0.656916 | 4.3:+67611555 | MS.gene48649:CDS |
| GCTTCTACTAAGGACACTCA+AGG | 0.674014 | 4.3:+67611451 | MS.gene48649:CDS |
| ATTCTTGTGTCAACTCCAGG+TGG | 0.739348 | 4.3:-67611487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAGAATAAGATTTTTT+AGG | + | chr4.3:67611386-67611405 | MS.gene48649:CDS | 15.0% |
| !!! | TAGTTTAAAATTGAATTTCA+AGG | - | chr4.3:67611740-67611759 | None:intergenic | 15.0% |
| !! | GAAACTGAAAATAAAATTAG+AGG | + | chr4.3:67612543-67612562 | MS.gene48649:CDS | 20.0% |
| !!! | ATTAAATTCTGTTTTTCTTC+AGG | + | chr4.3:67612158-67612177 | MS.gene48649:intron | 20.0% |
| !!! | CGTTTTAAAAAAAGAAAAAC+TGG | + | chr4.3:67612201-67612220 | MS.gene48649:intron | 20.0% |
| !!! | TAATTTCATGAATTTTTCTG+AGG | - | chr4.3:67612434-67612453 | None:intergenic | 20.0% |
| !!! | TCTTATTCTTCTTATTGTTT+TGG | - | chr4.3:67611380-67611399 | None:intergenic | 20.0% |
| !!! | TTTATACTTTTTGTAGGAAA+CGG | - | chr4.3:67611664-67611683 | None:intergenic | 20.0% |
| ! | AAAGTAGAAGATTCTATGAT+TGG | + | chr4.3:67612485-67612504 | MS.gene48649:CDS | 25.0% |
| ! | AGACTAAAACAACTATTAGT+CGG | + | chr4.3:67611993-67612012 | MS.gene48649:intron | 25.0% |
| !! | TTATTTTCAGTTTCTCTTGT+TGG | - | chr4.3:67612537-67612556 | None:intergenic | 25.0% |
| !!! | TGGTGTTTTATACTTTTTGT+AGG | - | chr4.3:67611670-67611689 | None:intergenic | 25.0% |
| AAAATTAGAGGATCCTTATG+AGG | + | chr4.3:67612555-67612574 | MS.gene48649:CDS | 30.0% | |
| AACAGGTTCATAATTCTTCA+AGG | - | chr4.3:67612584-67612603 | None:intergenic | 30.0% | |
| AATAGTAGAATTTGTGGAGA+AGG | - | chr4.3:67611337-67611356 | None:intergenic | 30.0% | |
| AGTTCGTATAAGTATGTGTT+TGG | + | chr4.3:67611761-67611780 | MS.gene48649:intron | 30.0% | |
| ATGTCAGAGTTTGATCAAAA+AGG | - | chr4.3:67612028-67612047 | None:intergenic | 30.0% | |
| CTACTATTCAATCCAATCTT+AGG | + | chr4.3:67611349-67611368 | MS.gene48649:CDS | 30.0% | |
| GAATATTTGTGCAGATTCTT+AGG | + | chr4.3:67612310-67612329 | MS.gene48649:intron | 30.0% | |
| GGATTGAATAGTAGAATTTG+TGG | - | chr4.3:67611343-67611362 | None:intergenic | 30.0% | |
| GGCAAAATTCAGTTTACAAT+CGG | - | chr4.3:67611719-67611738 | None:intergenic | 30.0% | |
| TCAGCTAATGTTGAATAGTT+TGG | + | chr4.3:67611941-67611960 | MS.gene48649:intron | 30.0% | |
| TGACAAGAGTTACTGAATAA+TGG | + | chr4.3:67612288-67612307 | MS.gene48649:intron | 30.0% | |
| TGATCAAACTCTGACATAAT+CGG | + | chr4.3:67612031-67612050 | MS.gene48649:intron | 30.0% | |
| TTTCTCATGATACAAATCTC+TGG | - | chr4.3:67612253-67612272 | None:intergenic | 30.0% | |
| ! | AACCACTTCGATTTTCTATT+AGG | + | chr4.3:67611692-67611711 | MS.gene48649:intron | 30.0% |
| ! | ACATAATCGGTACATGTTTT+GGG | + | chr4.3:67612044-67612063 | MS.gene48649:intron | 30.0% |
| ! | AGTTATACTTAGTGCTCTTT+TGG | - | chr4.3:67611913-67611932 | None:intergenic | 30.0% |
| ! | CGGTGGTTTTTATAAAATCA+CGG | - | chr4.3:67611884-67611903 | None:intergenic | 30.0% |
| ! | CGTGATTTTATAAAAACCAC+CGG | + | chr4.3:67611882-67611901 | MS.gene48649:intron | 30.0% |
| ! | TAGAAAATCGAAGTGGTTTT+TGG | - | chr4.3:67611690-67611709 | None:intergenic | 30.0% |
| AAGCAATCAAAGTAGCATTC+AGG | + | chr4.3:67612356-67612375 | MS.gene48649:CDS | 35.0% | |
| AGCATTCAGGAAACTTTCAA+AGG | + | chr4.3:67612369-67612388 | MS.gene48649:CDS | 35.0% | |
| AGTTGACACAAGAATCCATT+GGG | + | chr4.3:67611495-67611514 | MS.gene48649:CDS | 35.0% | |
| ATCTCTGGTAACTAGTAAGT+TGG | - | chr4.3:67612238-67612257 | None:intergenic | 35.0% | |
| GACCTAATAGAAAATCGAAG+TGG | - | chr4.3:67611697-67611716 | None:intergenic | 35.0% | |
| TACATGAGTGATACAGCATA+TGG | - | chr4.3:67612701-67612720 | None:intergenic | 35.0% | |
| TACGACTTGAGTTCAATTGT+TGG | + | chr4.3:67611965-67611984 | MS.gene48649:intron | 35.0% | |
| ! | AATGATGATGAAGGTTGGAT+TGG | + | chr4.3:67611520-67611539 | MS.gene48649:CDS | 35.0% |
| ! | GACATAATCGGTACATGTTT+TGG | + | chr4.3:67612043-67612062 | MS.gene48649:intron | 35.0% |
| ! | GAGAAACCTAAGAAGCTTTT+GGG | + | chr4.3:67611577-67611596 | MS.gene48649:CDS | 35.0% |
| ! | TGCATTTGTTTGTTGCTGTT+TGG | - | chr4.3:67611554-67611573 | None:intergenic | 35.0% |
| !! | AAAGCTTGCTTTTGTAGCTT+CGG | - | chr4.3:67611841-67611860 | None:intergenic | 35.0% |
| !!! | GCTGATTTGCTCAATTTTCA+AGG | + | chr4.3:67611610-67611629 | MS.gene48649:CDS | 35.0% |
| !!! | GTTTTGGTGTTTCCTAAGAT+TGG | - | chr4.3:67611364-67611383 | None:intergenic | 35.0% |
| !!! | TGTTTGGACTAGCTTTTACA+AGG | + | chr4.3:67611777-67611796 | MS.gene48649:intron | 35.0% |
| !!! | TTTCTGAGGCTGTTTTTAGA+GGG | - | chr4.3:67612420-67612439 | None:intergenic | 35.0% |
| !!! | TTTTCTGAGGCTGTTTTTAG+AGG | - | chr4.3:67612421-67612440 | None:intergenic | 35.0% |
| ACAGCAACAAACAAATGCAG+AGG | + | chr4.3:67611555-67611574 | MS.gene48649:CDS | 40.0% | |
| ACTTGCAACTTCTTGAGCAA+GGG | - | chr4.3:67612512-67612531 | None:intergenic | 40.0% | |
| ATTGCTTCTACATCAGCTTC+TGG | - | chr4.3:67612343-67612362 | None:intergenic | 40.0% | |
| CAAACTGTAGTGAGAGTTTG+AGG | - | chr4.3:67611422-67611441 | None:intergenic | 40.0% | |
| CTTCATCATCATTCTCCCAA+TGG | - | chr4.3:67611513-67611532 | None:intergenic | 40.0% | |
| GAGTTGACACAAGAATCCAT+TGG | + | chr4.3:67611494-67611513 | MS.gene48649:CDS | 40.0% | |
| GCAAGTTCATGCTTCTACTA+AGG | + | chr4.3:67611441-67611460 | MS.gene48649:CDS | 40.0% | |
| TCTTCACCCAAAAGCTTCTT+AGG | - | chr4.3:67611586-67611605 | None:intergenic | 40.0% | |
| TTATGAACCTGTTCCAGACA+TGG | + | chr4.3:67612591-67612610 | MS.gene48649:CDS | 40.0% | |
| TTCTTCAAGGCTACCTCATA+AGG | - | chr4.3:67612571-67612590 | None:intergenic | 40.0% | |
| ! | CATTGGGAGAATGATGATGA+AGG | + | chr4.3:67611511-67611530 | MS.gene48649:CDS | 40.0% |
| ! | GGAGAAACCTAAGAAGCTTT+TGG | + | chr4.3:67611576-67611595 | MS.gene48649:CDS | 40.0% |
| !! | AAGCTTGCTTTTGTAGCTTC+GGG | - | chr4.3:67611840-67611859 | None:intergenic | 40.0% |
| !! | TTTTCACGTATAGCTTGCCT+CGG | - | chr4.3:67611816-67611835 | None:intergenic | 40.0% |
| !!! | TAGTGCTCTTTTGGTTTAGC+CGG | - | chr4.3:67611904-67611923 | None:intergenic | 40.0% |
| ACATGGTTGATCGTCTTGGT+GGG | + | chr4.3:67612608-67612627 | MS.gene48649:CDS | 45.0% | |
| ATTCTTGTGTCAACTCCAGG+TGG | - | chr4.3:67611490-67611509 | None:intergenic | 45.0% | |
| GACTTGCAACTTCTTGAGCA+AGG | - | chr4.3:67612513-67612532 | None:intergenic | 45.0% | |
| GCTTCTACTAAGGACACTCA+AGG | + | chr4.3:67611451-67611470 | MS.gene48649:CDS | 45.0% | |
| TGGATTCTTGTGTCAACTCC+AGG | - | chr4.3:67611493-67611512 | None:intergenic | 45.0% | |
| ! | GATGATGAAGGTTGGATTGG+AGG | + | chr4.3:67611523-67611542 | MS.gene48649:CDS | 45.0% |
| ! | GGGAGAATGATGATGAAGGT+TGG | + | chr4.3:67611515-67611534 | MS.gene48649:CDS | 45.0% |
| ! | TTTCACGTATAGCTTGCCTC+GGG | - | chr4.3:67611815-67611834 | None:intergenic | 45.0% |
| AAGGCAAATATCACGTCCCG+AGG | + | chr4.3:67611796-67611815 | MS.gene48649:intron | 50.0% | |
| AGAGGGAGTGAAGTTGTGTC+TGG | - | chr4.3:67612403-67612422 | None:intergenic | 50.0% | |
| CCAAGACGATCAACCATGTC+TGG | - | chr4.3:67612607-67612626 | None:intergenic | 50.0% | |
| CCAGACATGGTTGATCGTCT+TGG | + | chr4.3:67612604-67612623 | MS.gene48649:CDS | 50.0% | |
| GACATGGTTGATCGTCTTGG+TGG | + | chr4.3:67612607-67612626 | MS.gene48649:CDS | 50.0% | |
| ! | CGATCAACCATGTCTGGAAC+AGG | - | chr4.3:67612601-67612620 | None:intergenic | 50.0% |
| !! | ACTCCAGGTGGTGCTTTTTG+TGG | - | chr4.3:67611478-67611497 | None:intergenic | 50.0% |
| !!! | TGCTCTTTTGGTTTAGCCGG+TGG | - | chr4.3:67611901-67611920 | None:intergenic | 50.0% |
| !! | GGACCACAAAAAGCACCACC+TGG | + | chr4.3:67611472-67611491 | MS.gene48649:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 67611316 | 67612741 | 67611316 | ID=MS.gene48649 |
| chr4.3 | mRNA | 67611316 | 67612741 | 67611316 | ID=MS.gene48649.t1;Parent=MS.gene48649 |
| chr4.3 | exon | 67611316 | 67611644 | 67611316 | ID=MS.gene48649.t1.exon1;Parent=MS.gene48649.t1 |
| chr4.3 | CDS | 67611316 | 67611644 | 67611316 | ID=cds.MS.gene48649.t1;Parent=MS.gene48649.t1 |
| chr4.3 | exon | 67612324 | 67612741 | 67612324 | ID=MS.gene48649.t1.exon2;Parent=MS.gene48649.t1 |
| chr4.3 | CDS | 67612324 | 67612741 | 67612324 | ID=cds.MS.gene48649.t1;Parent=MS.gene48649.t1 |
| Gene Sequence |
| Protein sequence |
