AlfalfaGEDB | MS.gene39678

M. sativa cultivar XinJiangDaYe / MS.gene39678

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39678.t1	XP_003626796.1	87.2	358	15	1	1	327	1	358	1.00E-178	636

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39678.t1	Q9LTH7	53.4	350	123	5	15	327	12	358	8.2e-108	391.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39678.t1	G7LCM1	87.2	358	15	1	1	327	1	358	7.5e-179	636.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene39678	0.811135	8.15E-51	-1.69E-46
MS.gene049217	MS.gene39678	0.840311	9.38E-58	-1.69E-46
MS.gene049222	MS.gene39678	0.86097	1.42E-63	-1.69E-46
MS.gene049232	MS.gene39678	0.857597	1.46E-62	-1.69E-46
MS.gene049285	MS.gene39678	0.852565	4.25E-61	-1.69E-46
MS.gene049320	MS.gene39678	0.869007	4.27E-66	-1.69E-46
MS.gene049356	MS.gene39678	0.850025	2.22E-60	-1.69E-46
MS.gene049369	MS.gene39678	0.899891	1.26E-77	-1.69E-46
MS.gene04939	MS.gene39678	0.800194	1.62E-48	-1.69E-46
MS.gene049396	MS.gene39678	0.891459	3.90E-74	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene39678	MS.gene90478	PPI
MS.gene39678	MS.gene020044	PPI
MS.gene39678	MS.gene011783	PPI
MS.gene39678	MS.gene56812	PPI
MS.gene39678	MS.gene39368	PPI
MS.gene39678	MS.gene39366	PPI
MS.gene39678	MS.gene041949	PPI
MS.gene39678	MS.gene022676	PPI
MS.gene39678	MS.gene019708	PPI
MS.gene39678	MS.gene022683	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39678.t1	MTR_8g009170	87.151	358	15	1	1	327	1	358	0.0	629
MS.gene39678.t1	MTR_8g009110	80.168	358	39	2	1	327	1	357	0.0	585
MS.gene39678.t1	MTR_8g009160	80.726	358	36	3	1	327	1	356	0.0	584
MS.gene39678.t1	MTR_8g009090	79.050	358	42	3	1	327	1	356	0.0	570
MS.gene39678.t1	MTR_8g008930	77.437	359	47	3	1	327	1	357	0.0	562
MS.gene39678.t1	MTR_8g028435	79.050	358	42	3	1	327	1	356	0.0	560
MS.gene39678.t1	MTR_8g009150	72.346	358	47	3	1	327	1	337	0.0	513
MS.gene39678.t1	MTR_4g117880	67.127	362	86	2	1	330	1	361	5.40e-177	495
MS.gene39678.t1	MTR_8g009120	71.508	358	58	3	1	327	1	345	5.99e-177	494
MS.gene39678.t1	MTR_8g009170	84.043	282	14	1	1	251	1	282	6.53e-171	477

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39678.t1	AT5G59540	53.143	350	124	5	15	327	12	358	4.51e-135	389
MS.gene39678.t1	AT5G59530	54.728	349	119	6	15	327	11	356	7.04e-134	385
MS.gene39678.t1	AT1G06650	53.429	350	123	5	16	327	14	361	3.12e-131	379
MS.gene39678.t1	AT1G06620	54.227	343	120	5	19	327	18	357	3.79e-130	376
MS.gene39678.t1	AT1G06640	51.913	366	129	8	4	327	1	361	6.81e-125	363
MS.gene39678.t1	AT1G04350	50.997	351	129	6	14	327	8	352	2.67e-124	361
MS.gene39678.t1	AT5G43440	50.435	345	130	4	15	321	11	352	3.97e-123	358
MS.gene39678.t1	AT1G06645	51.117	358	129	7	9	327	21	371	1.99e-122	357
MS.gene39678.t1	AT5G43450	49.706	340	127	6	20	321	16	349	1.86e-115	339
MS.gene39678.t1	AT1G04380	49.419	344	123	6	16	327	13	337	2.43e-115	338

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Find 81 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATGGATTGTGCTCA+AGG	0.508149	8.3:-79834589	MS.gene39678:CDS
AAAGATCCAAGTATTCACCA+AGG	0.675646	8.3:-79835806	MS.gene39678:CDS
AAAGCATCTTCAAAGCTCTA+TGG	0.389751	8.3:-79832175	MS.gene39678:CDS
AAAGCTCTATGGACCAATGA+AGG	0.519376	8.3:-79832164	MS.gene39678:CDS
AACAGTAGTTTCTTTGTATT+TGG	0.104565	8.3:+79832117	None:intergenic
AACTCCTCAAGAACACTCAA+AGG	0.516232	8.3:+79835716	None:intergenic
AAGAGTTTCCTGTAGTATGC+AGG	0.544361	8.3:-79835514	MS.gene39678:intron
AAGATATGGATTGTGCTCAA+GGG	0.643268	8.3:-79834588	MS.gene39678:CDS
AAGATCCAAGTATTCACCAA+GGG	0.638816	8.3:-79835805	MS.gene39678:CDS
AAGCATGCAACAGATATTCT+TGG	0.361845	8.3:+79832214	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAACATTGCTTGTGTTGT+TGG	+	chr8.3:79831763-79831782	None:intergenic	30.0%
ACATGTTAGTAGTGTTTCAT+AGG	-	chr8.3:79832517-79832536	MS.gene39678:intron	30.0%
ACCAAACCATTTGAAAGATA+TGG	-	chr8.3:79833017-79833036	MS.gene39678:intron	30.0%
AGAAGAGAACAAAAGAACAA+AGG	+	chr8.3:79832371-79832390	None:intergenic	30.0%
AGACATTGTAAAGAAATCTC+CGG	-	chr8.3:79834267-79834286	MS.gene39678:intron	30.0%
AGAGATATACTGCTACAATA+TGG	-	chr8.3:79832931-79832950	MS.gene39678:intron	30.0%
AGCAATAAAAAGATCCGTAA+AGG	+	chr8.3:79834093-79834112	None:intergenic	30.0%
AGCTTGAGTATGACTTAAAT+AGG	+	chr8.3:79832655-79832674	None:intergenic	30.0%
ATGAAACACTACTAACATGT+TGG	+	chr8.3:79832517-79832536	None:intergenic	30.0%
ATGAACTCATAAACATGATG+TGG	-	chr8.3:79835690-79835709	MS.gene39678:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	79831603	79836038	79831603	ID=MS.gene39678
chr8.3	mRNA	79831603	79836038	79831603	ID=MS.gene39678.t1;Parent=MS.gene39678
chr8.3	exon	79835698	79836038	79835698	ID=MS.gene39678.t1.exon1;Parent=MS.gene39678.t1
chr8.3	CDS	79835698	79836038	79835698	ID=cds.MS.gene39678.t1;Parent=MS.gene39678.t1
chr8.3	exon	79835515	79835604	79835515	ID=MS.gene39678.t1.exon2;Parent=MS.gene39678.t1
chr8.3	CDS	79835515	79835604	79835515	ID=cds.MS.gene39678.t1;Parent=MS.gene39678.t1
chr8.3	exon	79834387	79834708	79834387	ID=MS.gene39678.t1.exon3;Parent=MS.gene39678.t1
chr8.3	CDS	79834387	79834708	79834387	ID=cds.MS.gene39678.t1;Parent=MS.gene39678.t1
chr8.3	exon	79832074	79832296	79832074	ID=MS.gene39678.t1.exon4;Parent=MS.gene39678.t1
chr8.3	CDS	79832074	79832296	79832074	ID=cds.MS.gene39678.t1;Parent=MS.gene39678.t1
chr8.3	exon	79831603	79831652	79831603	ID=MS.gene39678.t1.exon5;Parent=MS.gene39678.t1
chr8.3	CDS	79831603	79831652	79831603	ID=cds.MS.gene39678.t1;Parent=MS.gene39678.t1

Gene Sequence

>MS.gene39678

ATGGGAACCATTGATACAACCAAACCTAACCTTGATTCCACATTCAGTGAACGCAAAGCATTTGATGAAACAAAAGCAGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATACCTGAATTATTCCATCATCAACCTGACAAATACGAGAAAGCCAACAACACAAGCAATGTTATTCCTGTCATAGACCTTGATGATATTGATAATAAAGATCCAAGTATTCACCAAGGGATAGTTGAGAAAGTCAAGGAAGCATGTGAAACTTGGGGATTTTTTCAAGTTGTCAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGGGTGAAAAGGTTTTATGAACAAGACACAGAAGTCAAAAAAGATTTTTATACAAGAGATATCAGTAGATCATTTATTTACAATAGCAATGTTGATGTTTATAGCTCCCCAGCACTCAATTGGAAGGATAGTTTTGGTTGTAACTTGGCTCCACCTGATACTCTCAAACCAGAAGAGTTTCCTGTAGTATGCAGGTATGTTTATGTACATGTGTAAAATTTATTTGCTCATTGAAATTTGGTTATTATCATTTGCAGCACTGAAATTTCAGATTGGATGCGCGTTGAGTGTATTACACATGTTTGTGTCTGTTAAATAATGTGTAATGGGCCTTTTGTTATAATTCGGCTAAGGGTAGTTTAGTTTATTTATAATTCGGCTTAGAGTAATATTTGCACTATGAACTTTTTGCTCATTCTAATAAAACTCTAGTCGCCTTTGTTCTTTTGTTCTCTTCTCCAGTACTCTATACTGTAAAGTGTCGTCAGACTCTGACACAACACTGATCTACATTGTTGCATTCATTTATACAATTTTTTCAAACTTTTACTAGCGTTGACATGTTAGTATCAAAATCGTCTCCAACATGTTAGTAGTGTTTCATAGGACTTAAGTTAAGGTACTCAAATTAGCTACTTTTTTTTTTTTTTTTGTCTAATCGAAGTAACAAGGACTGAAATTCGCAGCAAGGTCATTCTAACTCTTACAATACTCCGCTGCCTATTTAAGTCATACTCAAGCTTAGCCTTTTTCTAATATCTCTAATATTGTCATATATACTATGTATGAAATGTGTTTTCATTGGTGAAATTGCTTTGATATCCTTATGTTAAAATATATTAATCGATGAAATAGCTTTTATATATATCCTTTTCTTATTTGCTAGAGATGCATCTCTTTTACAGGAAAGGTCTGTTTATAAGATGCAAATCACATATAATAGTATAAAATGGAATTTAATCTACAATTTTTCTCTCTAATTAGCTAATTATATTTGCAGAGATATACTGCTACAATATGGAAAACACATGATGAATCTAGGGACTTTATTATTTGAATTGTTGTCAGAAGCTTTAGGTTTGAAACCAAACCATTTGAAAGATATGGATTGTGCTCAAGGGCTAATTGCTCTTTGCCATTATTATCCTTCTTGTCCTGAACCAGAATTGACTGTGGGAACAACAAAGCATTCTGATAATGATTTCCTCACGGTGCTTCTTCAAGACCATATTGGTGGCCTCCAAGTTCTTTATGAAGATAAATGGATTGATATAACACCTGTACCTGGAGCTCTCATAGTTAATGTTGGAGATCTTTTGCAGGCAAGTTTTTTGCATACTTATGTGTATATTTCCATAAACTATTATTAGTAATGTACTTCCTAAATTCTATTAAATACTTAATACAAAATTATATTATATTTACCTACAAATAGATAGACCAGAGATCGAGAATTGTGTACCTGAGTTTTAGAAGTAGAGTATATTTCTTTGCCGTCTAGGTTTTCAACCTTGGCTTACCATCTAATGAGTAACCATTAAATAATCAAACTGCCCGAGCAGAGACTTCTCATCGGACATATTAGATTGACCAAACCTATCACGGTCTATTCAAAATAAAGCTCAGTGCATATTAGTGGTTAATGATCATAATTGATGATAGTAATTTTTTTTAGAATCATCAAATTTTATTCACGTCGAGAGTGTACAAGATGCACAACAAACTCGCGGGCAGAAAAACACCATACAAGGGTCACCGACATACCGGCAAACCAGAAAAGACAGCACCCTAAAAGCCCAAAAAAACCAGACCTGCTAAAACAAATGACAGCAGCCGAAACCAAGCTGCAACCACCAAAACTGATGCTGTTATATGCATTACTGACAGCAACAAAACCGCAGGCACCGCATAACACTGCCTCAGCCTCGAAATCACAGCAGAACACCGCGACCCTATCGCAACAGACAATCTTTTGGATTCCAGTGCCACTCATAGAACAGACATGCCGGCCCTGGCAACCGACTCAAACACCATCTCCACGGCATAGCCTTTATGCCTTCCACTACCTCCTCCACATCGCCAGTCGAGTTATTGAAAACTCTGTCATTTCGAGCCTTCCAAATACTCCACACCACCGCATGCCAAATCATCCTCAAGCCTTTACGGATCTTTTTATTGCTCGAAACTCCATCCCAACAATCCCAAAGAAAGAATAAATTAGGCGGAGTGACAAAATGAAATCCCAGCCATCTCATAACTTCATCCCACACCTTCATAGCAAAAGAACAATGGAGGAACAAATGGTTGGACGACTCTAGCAACCCTTCACACATCAGACATTGTAAAGAAATCTCCGGTGGTAACACTTGCCTATGCGCGAGGTTTGCCTTTGTTGGGATCCTATTATGAAGGAGTTTCCAAGAGAACACCGCAACTTTGGACGGAGTCGCACTCCTCCAAATCCGAGAAAACACCTGCACTTGCTCCAAAGACATAATAGACTCGTCCTCCAACATCAATCCCTCCAACTTCCATTACAAGGATTTCACCGAAAACCTCCCATCATCTTCCAGCCTCCACCTCCAAACATCCTCCTCCTGACTCCCCCTAAACCCTCCCAAATCCTCCTTCAACTCCAGCAACATCTCCTCTTCCCAAACAAAAAGCGGACGACGCCAAGAGAACCCCCAATCTACATCTGTCACCAAACCAACGGCCAACTCCCCCACATTTGCCTCCTTTTGATTTGATAAAGAGAATAGCCTCAGATATTTATCCCGGAAAGCACGATCCCCCCTCCAAGCACCTCGTATTCTCTCCATTCCCCACCAATCTAACAATTTTGGAATTTAGCCAATTTTAGTCATCCAACCTAACTAAATCCCTCCACCATCTAGATGCATGTCCCAGCCAAACATACTCCTCTTCTAGTAATTGATTATGCCAACCCATATAATTGATTAATTAAATAGTTAATCTAAGATAATGATAAAGAAATCAATATGCCAGTTATTGAGCTGCCAGAATGTGTCATGCACTAAGCAAAACAGACACCAGAGCTACAAAAATAGGACACACCATACAATCTAGTTTGTGCAATCTAATTTATGATGGTGTTGTTTTGGTTCTTTGTAATTAATCAAGTCTCCTGCATTTTCAACTTGGCTTCAAGCATATAGCATGCCTTATCTTCCATCTTATTGGAGGTGTTATGTTAAGTTTTTTGTGTCTTCTTCTATTGCTTACTTTACTAGTAATATGAATAGTTCATCGTAAACTTGATCTCTCAAACTTTACTAGTGATTTTTAGTAAAATATAGTGATATACATTCAATATACATAGATAGAACAGTGCCTAACTTGGAGAATCTGCACCTTCCTATAGCTAATTATTTGTTTGTTTAAATTGTAGCTCATAACAAATGACAAATTCAAGAGTGTTGTACATAGAGTACTTGCCAATAAAGTTGGTCCAAGAATATCTGTTGCATGCTTTTTCTCCACAGGACTTAAAGCATCTTCAAAGCTCTATGGACCAATGAAGGAACTATTATCAGAAGACAATCCTCCCAAATACAAAGAAACTACTGTTGCTGATTATGTAGCCTACTACTTTCGAGCAAAAGGAGTAGATGGTACTTCTGCACTTGAACATTACAAAATTTGAACTAAGCAATGTGGCAGAAAAAATATTAGCTCATATAAATAATTGACAGATCTTTGTGAGTTGGTTTCATCAATTCCACTTGATTGTGATATGAACTCATAAACATGATGTGGTTTTTATTTCATGCAATGGATGAATTACAATGTATAAACATTCACTTATTGAACACAGATGTTTTATTTATCATAACCCTCCAGTTCGAGAAAAAGGTTCCATAATAATTCAGAGTTCAGTTGGGAGGTAAGTAAAGTATAACCAAGAATTGTCCCAGCCATGATTTGAACTGGAGCTCTCCCAAACTATTCGTCTTTAACTGAGAGACAAATGTTGATTACTTATGTTAGATTATTGTTTTCCTAGTAAACTTGCTTTAACTCGATTGCTCTCAGGAACTTTCATCGTTTTCGGTATTCTACAATCTTCCGAATGTCGAGCATGA

Protein sequence

>MS.gene39678.t1

MGTIDTTKPNLDSTFSERKAFDETKAGVKGLVDGGLKKIPELFHHQPDKYEKANNTSNVIPVIDLDDIDNKDPSIHQGIVEKVKEACETWGFFQVVNHGIPLSVLEELKDGVKSSPALNWKDSFGCNLAPPDTLKPEEFPVVCRDILLQYGKHMMNLGTLLFELLSEALGLKPNHLKDMDCAQGLIALCHYYPSCPEPELTVGTTKHSDNDFLTVLLQDHIGGLQVLYEDKWIDITPVPGALIVNVGDLLQLITNDKFKSVVHRVLANKVGPRISVACFFSTGLKASSKLYGPMKELLSEDNPPKYKETTVADYVAYYFRAKGVDGTFIVFGILQSSECRA