AlfalfaGEDB | MS.gene83251

M. sativa cultivar XinJiangDaYe / MS.gene83251

KEGG: K23051
GO: -
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83251.t1	XP_013455235.1	96.4	248	8	1	1	248	23	269	3.20E-129	471.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83251.t1	Q9SMS0	59.4	229	82	3	20	247	28	246	1.4e-69	264.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83251.t1	A0A072UIK1	96.4	248	8	1	1	248	23	269	2.3e-129	471.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene83251	0.838432	2.89E-57	-1.69E-46
MS.gene049222	MS.gene83251	0.871432	6.87E-67	-1.69E-46
MS.gene049232	MS.gene83251	0.900696	5.66E-78	-1.69E-46
MS.gene049285	MS.gene83251	0.844261	8.44E-59	-1.69E-46
MS.gene049320	MS.gene83251	0.851338	9.47E-61	-1.69E-46
MS.gene049369	MS.gene83251	0.821033	5.00E-53	-1.69E-46
MS.gene049396	MS.gene83251	0.908417	1.75E-81	-1.69E-46
MS.gene049552	MS.gene83251	0.830616	2.66E-55	-1.69E-46
MS.gene049609	MS.gene83251	0.879102	1.64E-69	-1.69E-46
MS.gene049633	MS.gene83251	0.848636	5.40E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83251.t1	MTR_4g032805	96.371	248	8	1	1	248	23	269	0.0	498
MS.gene83251.t1	MTR_2g097690	50.000	62	29	1	109	170	77	136	3.52e-12	63.9
MS.gene83251.t1	MTR_5g022180	36.264	91	55	2	87	176	53	141	7.03e-12	62.4
MS.gene83251.t1	MTR_2g097690	50.000	64	30	1	107	170	75	136	1.34e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83251.t1	AT4G09350	59.389	229	82	3	20	247	28	246	8.25e-96	281
MS.gene83251.t1	AT5G59610	49.231	65	31	1	105	169	71	133	2.68e-11	62.4
MS.gene83251.t1	AT5G59610	49.231	65	31	1	105	169	71	133	6.21e-11	61.6
MS.gene83251.t1	AT5G59610	49.231	65	31	1	105	169	71	133	6.21e-11	61.6
MS.gene83251.t1	AT5G59610	49.231	65	31	1	105	169	71	133	6.88e-11	61.2
MS.gene83251.t1	AT5G59610	49.231	65	31	1	105	169	71	133	6.88e-11	61.2

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Find 39 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGAGGATCCTTATG+AGG	0.498846	4.3:+67599423	MS.gene83251:CDS
AAAGTAGAAGATTCTATGAT+TGG	0.404469	4.3:+67599353	MS.gene83251:CDS
AACAGGTTCATAATTCTTCA+AGG	0.442631	4.3:-67599449	None:intergenic
AAGCAATCAAAGTAGCATTC+AGG	0.395851	4.3:+67599224	MS.gene83251:CDS
AATAGTAGAATTTGTGGAGA+AGG	0.498829	4.3:-67598202	None:intergenic
AATGATGATGAAGGTTGGAT+TGG	0.510553	4.3:+67598388	MS.gene83251:CDS
ACAGCAACAAACAAATGCAG+AGG	0.656916	4.3:+67598423	MS.gene83251:CDS
ACATGGTTGATCGTCTTGGT+GGG	0.606623	4.3:+67599476	MS.gene83251:CDS
ACTTGCAACTTCTTGAGCAA+GGG	0.574767	4.3:-67599377	None:intergenic
AGAGGGAGTGAAGTTGTGTC+TGG	0.393350	4.3:-67599268	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAGAGGATCCTTATG+AGG	+	chr4.3:67599423-67599442	MS.gene83251:CDS	30.0%
AACAGGTTCATAATTCTTCA+AGG	-	chr4.3:67599452-67599471	None:intergenic	30.0%
AATAGTAGAATTTGTGGAGA+AGG	-	chr4.3:67598205-67598224	None:intergenic	30.0%
AGTTCGTATAAGTATGTGTT+TGG	+	chr4.3:67598629-67598648	MS.gene83251:intron	30.0%
ATGTCAGAGTTTGATCAAAA+AGG	-	chr4.3:67598896-67598915	None:intergenic	30.0%
CTACTATTCAATCCAATCTT+AGG	+	chr4.3:67598217-67598236	MS.gene83251:CDS	30.0%
GAATATTTGTGCAGATTCTT+AGG	+	chr4.3:67599178-67599197	MS.gene83251:intron	30.0%
GGATTGAATAGTAGAATTTG+TGG	-	chr4.3:67598211-67598230	None:intergenic	30.0%
GGCAAAATTCAGTTTACAAT+CGG	-	chr4.3:67598587-67598606	None:intergenic	30.0%
TCAGCTAATGTTGAATAGTT+TGG	+	chr4.3:67598809-67598828	MS.gene83251:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	67598184	67599609	67598184	ID=MS.gene83251
chr4.3	mRNA	67598184	67599609	67598184	ID=MS.gene83251.t1;Parent=MS.gene83251
chr4.3	exon	67598184	67598512	67598184	ID=MS.gene83251.t1.exon1;Parent=MS.gene83251.t1
chr4.3	CDS	67598184	67598512	67598184	ID=cds.MS.gene83251.t1;Parent=MS.gene83251.t1
chr4.3	exon	67599192	67599609	67599192	ID=MS.gene83251.t1.exon2;Parent=MS.gene83251.t1
chr4.3	CDS	67599192	67599609	67599192	ID=cds.MS.gene83251.t1;Parent=MS.gene83251.t1

Gene Sequence

>MS.gene83251

ATGGCTTCAACAGCAACACCTTCTCCACAAATTCTACTATTCAATCCAATCTTAGGAAACACCAAAACAATAAGAAGAATAAGATTTTTTAGGATAACAACAACCTCAAACTCTCACTACAGTTTGCAAGTTCATGCTTCTACTAAGGACACTCAAGGACCACAAAAAGCACCACCTGGAGTTGACACAAGAATCCATTGGGAGAATGATGATGAAGGTTGGATTGGAGGTAGCACCAAACAGCAACAAACAAATGCAGAGGAGAAACCTAAGAAGCTTTTGGGTGAAGACTTTGCTGATTTGCTCAATTTTCAAGGTTCTCATTATGAGTGAGTTTCTTTATAACCGTTTCCTACAAAAAGTATAAAACACCAAAAACCACTTCGATTTTCTATTAGGTCCGATTGTAAACTGAATTTTGCCTTGAAATTCAATTTTAAACTAAAGTTCGTATAAGTATGTGTTTGGACTAGCTTTTACAAGGCAAATATCACGTCCCGAGGCAAGCTATACGTGAAAATCCCGAAGCTACAAAAGCAAGCTTTTGTAAAAACGTGAAAATTTACCGTGATTTTATAAAAACCACCGGCTAAACCAAAAGAGCACTAAGTATAACTAAAGCATTTCAGCTAATGTTGAATAGTTTGGATACGACTTGAGTTCAATTGTTGGCTAAAAGACTAAAACAACTATTAGTCGGACTTTACTTCCTTTTTGATCAAACTCTGACATAATCGGTACATGTTTTGGGTTAAGATAAAAATATTAAGAGTTTGTTGCATTGTAAACTGATTTTTTCAGAATGAAGTTCATTTAAACTTAAGTTTAGTCAAGATACTATTATTAAATTCTGTTTTTCTTCAGGTAACATGAGAATTTTCTTTTCGTTTTAAAAAAAGAAAAACTGGTGCATAAGTTGCCAACTTACTAGTTACCAGAGATTTGTATCATGAGAAAACTTGTTTATTTAAATGACAAGAGTTACTGAATAATGGAATATTTGTGCAGATTCTTAGGAATATCACCAGAAGCTGATGTAGAAGCAATCAAAGTAGCATTCAGGAAACTTTCAAAGGAGTATCATCCAGACACAACTTCACTCCCTCTAAAAACAGCCTCAGAAAAATTCATGAAATTAAAAGAAGTTTACACTGTTCTGAGCAATGAAGAAAGTAGAAGATTCTATGATTGGACCCTTGCTCAAGAAGTTGCAAGTCGCCAACAAGAGAAACTGAAAATAAAATTAGAGGATCCTTATGAGGTAGCCTTGAAGAATTATGAACCTGTTCCAGACATGGTTGATCGTCTTGGTGGGAAGAATATGAAGCTTAGTGATCAAGCTGTTTCTGCTATCACTATTGATATTTTTATCATTATTTTTTCCATATGCTGTATCACTCATGTAGTTTTCTTTAAAGAATACTGA

Protein sequence

>MS.gene83251.t1

MASTATPSPQILLFNPILGNTKTIRRIRFFRITTTSNSHYSLQVHASTKDTQGPQKAPPGVDTRIHWENDDEGWIGGSTKQQQTNAEEKPKKLLGEDFADLLNFQGSHYEFLGISPEADVEAIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTLAQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIIIFSICCITHVVFFKEY