Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84140.t1 | XP_003602198.1 | 98.2 | 514 | 9 | 0 | 1 | 514 | 1 | 514 | 8.60E-278 | 965.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84140.t1 | Q9ZNX9 | 57.1 | 517 | 219 | 1 | 1 | 514 | 1 | 517 | 4.5e-150 | 532.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84140.t1 | G7J6R7 | 98.2 | 514 | 9 | 0 | 1 | 514 | 1 | 514 | 6.2e-278 | 965.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene84140 | 0.866171 | 3.47E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene84140 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene84140 | 0.803058 | 4.18E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene84140 | 0.833686 | 4.62E-56 | -1.69E-46 |
| MS.gene049396 | MS.gene84140 | 0.90729 | 5.95E-81 | -1.69E-46 |
| MS.gene049552 | MS.gene84140 | 0.813303 | 2.74E-51 | -1.69E-46 |
| MS.gene049600 | MS.gene84140 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene84140 | 0.82375 | 1.17E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene84140 | 0.831849 | 1.32E-55 | -1.69E-46 |
| MS.gene049656 | MS.gene84140 | 0.810346 | 1.21E-50 | -1.69E-46 |
| MS.gene049757 | MS.gene84140 | 0.817309 | 3.53E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene84140 | 0.831199 | 1.91E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene84140 | 0.876931 | 9.43E-69 | -1.69E-46 |
| MS.gene050216 | MS.gene84140 | 0.83221 | 1.08E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene84140 | 0.883604 | 3.90E-71 | -1.69E-46 |
| MS.gene050496 | MS.gene84140 | 0.851237 | 1.01E-60 | -1.69E-46 |
| MS.gene050499 | MS.gene84140 | 0.842774 | 2.11E-58 | -1.69E-46 |
| MS.gene050502 | MS.gene84140 | 0.905572 | 3.72E-80 | -1.69E-46 |
| MS.gene050504 | MS.gene84140 | 0.811584 | 6.51E-51 | -1.69E-46 |
| MS.gene050520 | MS.gene84140 | 0.828249 | 9.98E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene84140 | 0.825687 | 4.09E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene84140 | 0.815231 | 1.03E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene84140 | 0.827133 | 1.85E-54 | -1.69E-46 |
| MS.gene050697 | MS.gene84140 | 0.876041 | 1.91E-68 | -1.69E-46 |
| MS.gene050747 | MS.gene84140 | 0.818858 | 1.57E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene84140 | 0.841098 | 5.84E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene84140 | 0.859962 | 2.88E-63 | -1.69E-46 |
| MS.gene050868 | MS.gene84140 | 0.870928 | 1.01E-66 | -1.69E-46 |
| MS.gene050871 | MS.gene84140 | 0.873424 | 1.49E-67 | -1.69E-46 |
| MS.gene050950 | MS.gene84140 | 0.819412 | 1.18E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene84140 | 0.828494 | 8.72E-55 | -1.69E-46 |
| MS.gene05118 | MS.gene84140 | 0.81696 | 4.22E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene84140 | 0.85175 | 7.24E-61 | -1.69E-46 |
| MS.gene051509 | MS.gene84140 | 0.896448 | 3.65E-76 | -1.69E-46 |
| MS.gene051551 | MS.gene84140 | 0.800772 | 1.23E-48 | -1.69E-46 |
| MS.gene051734 | MS.gene84140 | 0.827331 | 1.66E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene84140 | 0.824988 | 5.99E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene84140 | 0.851592 | 8.03E-61 | -1.69E-46 |
| MS.gene051941 | MS.gene84140 | 0.849781 | 2.59E-60 | -1.69E-46 |
| MS.gene052066 | MS.gene84140 | 0.83966 | 1.39E-57 | -1.69E-46 |
| MS.gene052100 | MS.gene84140 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene84140 | 0.844239 | 8.55E-59 | -1.69E-46 |
| MS.gene052346 | MS.gene84140 | 0.823564 | 1.29E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene84140 | -0.804359 | 2.24E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene84140 | 0.834307 | 3.23E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene84140 | 0.807728 | 4.39E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene84140 | 0.801376 | 9.27E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene84140 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene052504 | MS.gene84140 | 0.821686 | 3.54E-53 | -1.69E-46 |
| MS.gene052506 | MS.gene84140 | 0.826371 | 2.81E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene84140 | 0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene84140 | 0.835704 | 1.44E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene84140 | 0.804762 | 1.85E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene84140 | 0.836001 | 1.21E-56 | -1.69E-46 |
| MS.gene053018 | MS.gene84140 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene053162 | MS.gene84140 | 0.811999 | 5.28E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene84140 | 0.82323 | 1.55E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene84140 | -0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene053436 | MS.gene84140 | 0.827502 | 1.51E-54 | -1.69E-46 |
| MS.gene053449 | MS.gene84140 | 0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene84140 | 0.815736 | 7.93E-52 | -1.69E-46 |
| MS.gene053505 | MS.gene84140 | 0.849138 | 3.92E-60 | -1.69E-46 |
| MS.gene053574 | MS.gene84140 | 0.871413 | 6.96E-67 | -1.69E-46 |
| MS.gene053626 | MS.gene84140 | 0.868841 | 4.84E-66 | -1.69E-46 |
| MS.gene053633 | MS.gene84140 | 0.805698 | 1.18E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene84140 | 0.840897 | 6.59E-58 | -1.69E-46 |
| MS.gene053889 | MS.gene84140 | 0.837131 | 6.23E-57 | -1.69E-46 |
| MS.gene053912 | MS.gene84140 | 0.836486 | 9.10E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene84140 | 0.849839 | 2.50E-60 | -1.69E-46 |
| MS.gene054003 | MS.gene84140 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene84140 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene84140 | 0.848 | 8.10E-60 | -1.69E-46 |
| MS.gene05494 | MS.gene84140 | 0.879719 | 9.90E-70 | -1.69E-46 |
| MS.gene054954 | MS.gene84140 | 0.820063 | 8.36E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene84140 | 0.811232 | 7.76E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene84140 | 0.854586 | 1.12E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene84140 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene84140 | 0.812754 | 3.62E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene84140 | 0.841632 | 4.22E-58 | -1.69E-46 |
| MS.gene055744 | MS.gene84140 | 0.835285 | 1.83E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene84140 | 0.815834 | 7.55E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene84140 | 0.842318 | 2.78E-58 | -1.69E-46 |
| MS.gene055751 | MS.gene84140 | 0.822976 | 1.78E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene84140 | 0.812577 | 3.95E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene84140 | 0.865951 | 4.07E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene84140 | 0.837213 | 5.94E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene84140 | 0.833533 | 5.05E-56 | -1.69E-46 |
| MS.gene056040 | MS.gene84140 | 0.811244 | 7.71E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene84140 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene84140 | 0.861917 | 7.32E-64 | -1.69E-46 |
| MS.gene056387 | MS.gene84140 | 0.860315 | 2.25E-63 | -1.69E-46 |
| MS.gene056422 | MS.gene84140 | 0.872568 | 2.88E-67 | -1.69E-46 |
| MS.gene056446 | MS.gene84140 | 0.835336 | 1.78E-56 | -1.69E-46 |
| MS.gene056487 | MS.gene84140 | 0.804669 | 1.93E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene84140 | 0.87259 | 2.83E-67 | -1.69E-46 |
| MS.gene056510 | MS.gene84140 | 0.823449 | 1.38E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene84140 | 0.806201 | 9.23E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene84140 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene84140 | 0.806612 | 7.56E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene84140 | 0.840235 | 9.83E-58 | -1.69E-46 |
| MS.gene057019 | MS.gene84140 | 0.846191 | 2.54E-59 | -1.69E-46 |
| MS.gene057076 | MS.gene84140 | 0.846441 | 2.17E-59 | -1.69E-46 |
| MS.gene057086 | MS.gene84140 | 0.88936 | 2.60E-73 | -1.69E-46 |
| MS.gene057331 | MS.gene84140 | 0.800134 | 1.66E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene84140 | 0.842875 | 1.98E-58 | -1.69E-46 |
| MS.gene057876 | MS.gene84140 | 0.819717 | 1.00E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene84140 | 0.859607 | 3.68E-63 | -1.69E-46 |
| MS.gene058120 | MS.gene84140 | 0.845459 | 4.01E-59 | -1.69E-46 |
| MS.gene058130 | MS.gene84140 | 0.84981 | 2.55E-60 | -1.69E-46 |
| MS.gene058157 | MS.gene84140 | 0.805672 | 1.19E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene84140 | -0.808789 | 2.61E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene84140 | -0.813733 | 2.20E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene84140 | -0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene84140 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene84140 | 0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene058459 | MS.gene84140 | 0.841762 | 3.90E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene84140 | 0.807028 | 6.17E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene84140 | 0.811871 | 5.64E-51 | -1.69E-46 |
| MS.gene058978 | MS.gene84140 | -0.823631 | 1.25E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene84140 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene84140 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene84140 | -0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene84140 | -0.808733 | 2.68E-50 | -1.69E-46 |
| MS.gene059129 | MS.gene84140 | 0.833562 | 4.97E-56 | -1.69E-46 |
| MS.gene05913 | MS.gene84140 | 0.829624 | 4.64E-55 | -1.69E-46 |
| MS.gene059305 | MS.gene84140 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene84140 | 0.883858 | 3.14E-71 | -1.69E-46 |
| MS.gene059368 | MS.gene84140 | 0.857974 | 1.13E-62 | -1.69E-46 |
| MS.gene059517 | MS.gene84140 | 0.841962 | 3.46E-58 | -1.69E-46 |
| MS.gene059667 | MS.gene84140 | 0.873731 | 1.17E-67 | -1.69E-46 |
| MS.gene059674 | MS.gene84140 | 0.811683 | 6.19E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene84140 | 0.863741 | 2.01E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene84140 | 0.817042 | 4.05E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene84140 | 0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene84140 | 0.876988 | 9.01E-69 | -1.69E-46 |
| MS.gene06000 | MS.gene84140 | 0.851459 | 8.76E-61 | -1.69E-46 |
| MS.gene060372 | MS.gene84140 | 0.887955 | 9.05E-73 | -1.69E-46 |
| MS.gene060482 | MS.gene84140 | 0.839716 | 1.34E-57 | -1.69E-46 |
| MS.gene060593 | MS.gene84140 | -0.808407 | 3.14E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene84140 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene84140 | 0.895041 | 1.40E-75 | -1.69E-46 |
| MS.gene06077 | MS.gene84140 | 0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene84140 | 0.845391 | 4.18E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene84140 | 0.823812 | 1.13E-53 | -1.69E-46 |
| MS.gene06097 | MS.gene84140 | 0.889088 | 3.31E-73 | -1.69E-46 |
| MS.gene060982 | MS.gene84140 | 0.872692 | 2.62E-67 | -1.69E-46 |
| MS.gene061218 | MS.gene84140 | 0.855947 | 4.48E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030874 | MS.gene84140 | PPI |
| MS.gene27999 | MS.gene84140 | PPI |
| MS.gene47969 | MS.gene84140 | PPI |
| MS.gene84140 | MS.gene57358 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84140.t1 | MTR_3g090900 | 98.249 | 514 | 9 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1030 |
| MS.gene84140.t1 | MTR_3g090900 | 97.351 | 453 | 12 | 0 | 1 | 453 | 1 | 453 | 0.0 | 902 |
| MS.gene84140.t1 | MTR_3g090900 | 97.514 | 362 | 9 | 0 | 1 | 362 | 1 | 362 | 0.0 | 724 |
| MS.gene84140.t1 | MTR_3g118290 | 28.819 | 288 | 200 | 3 | 229 | 514 | 287 | 571 | 3.57e-33 | 133 |
| MS.gene84140.t1 | MTR_7g101840 | 31.000 | 300 | 202 | 4 | 216 | 513 | 257 | 553 | 4.40e-32 | 130 |
| MS.gene84140.t1 | MTR_1g063850 | 28.819 | 288 | 200 | 3 | 216 | 501 | 261 | 545 | 1.53e-29 | 122 |
| MS.gene84140.t1 | MTR_0172s0030 | 30.565 | 301 | 181 | 10 | 222 | 505 | 204 | 493 | 1.91e-23 | 103 |
| MS.gene84140.t1 | MTR_3g033420 | 32.394 | 213 | 140 | 3 | 305 | 514 | 192 | 403 | 5.11e-19 | 89.7 |
| MS.gene84140.t1 | MTR_1g007370 | 25.954 | 262 | 180 | 6 | 256 | 513 | 296 | 547 | 7.86e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84140.t1 | AT5G24120 | 61.877 | 522 | 186 | 5 | 1 | 514 | 1 | 517 | 0.0 | 625 |
| MS.gene84140.t1 | AT5G24120 | 61.877 | 522 | 186 | 5 | 1 | 514 | 1 | 517 | 0.0 | 625 |
| MS.gene84140.t1 | AT5G24120 | 61.877 | 522 | 186 | 5 | 1 | 514 | 1 | 517 | 0.0 | 625 |
| MS.gene84140.t1 | AT2G36990 | 31.333 | 300 | 201 | 3 | 216 | 513 | 247 | 543 | 1.57e-35 | 139 |
| MS.gene84140.t1 | AT1G08540 | 30.903 | 288 | 194 | 3 | 229 | 514 | 285 | 569 | 3.72e-34 | 136 |
| MS.gene84140.t1 | AT5G13730 | 27.532 | 316 | 197 | 9 | 215 | 512 | 113 | 414 | 4.27e-21 | 95.9 |
| MS.gene84140.t1 | AT1G64860 | 28.094 | 299 | 191 | 8 | 222 | 505 | 202 | 491 | 1.14e-20 | 95.5 |
| MS.gene84140.t1 | AT1G64860 | 28.497 | 193 | 130 | 4 | 222 | 410 | 202 | 390 | 6.69e-16 | 80.9 |
| MS.gene84140.t1 | AT3G53920 | 25.614 | 285 | 196 | 7 | 237 | 513 | 293 | 569 | 3.15e-14 | 75.9 |
Find 112 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACATCACGGTATCTTTC+AGG | 0.229998 | 3.1:-72825505 | None:intergenic |
| AGAAGATTGACGAACTTCTA+AGG | 0.267064 | 3.1:+72823473 | MS.gene84140:CDS |
| CCGTTAACGGTAGCATTTAA+AGG | 0.276378 | 3.1:+72823001 | MS.gene84140:CDS |
| AAGAGGATTTAAACAGTGAT+AGG | 0.297201 | 3.1:+72823323 | MS.gene84140:CDS |
| CCTTTAAATGCTACCGTTAA+CGG | 0.304115 | 3.1:-72823001 | None:intergenic |
| GAGACAGCTCTTGGTTTCTT+AGG | 0.309175 | 3.1:-72823130 | None:intergenic |
| TTGAGCCAAACCGGAGATTT+CGG | 0.320769 | 3.1:+72824790 | MS.gene84140:CDS |
| AATGAGCTTCTCACCTTCAT+TGG | 0.323733 | 3.1:-72823601 | None:intergenic |
| ATACTCAGTACCGGCTGATT+TGG | 0.341811 | 3.1:+72823498 | MS.gene84140:CDS |
| CTCATCAAGATTCATCCGTT+TGG | 0.343384 | 3.1:-72823371 | None:intergenic |
| GTAAATCATCTTTCACTTGA+AGG | 0.343761 | 3.1:-72824064 | None:intergenic |
| AGCTTCTCACGTGTTCCCTT+TGG | 0.354929 | 3.1:+72824873 | MS.gene84140:CDS |
| GTTGATGATGGTGGTGTTGA+TGG | 0.360239 | 3.1:+72825601 | MS.gene84140:CDS |
| CCTAGAGATGTTCAAGTTTG+AGG | 0.363298 | 3.1:-72826400 | None:intergenic |
| CTTTGTCAGGCTGGAGTTAA+GGG | 0.363815 | 3.1:+72824744 | MS.gene84140:CDS |
| TTTCAACCTACAGTCTGTTT+TGG | 0.364864 | 3.1:+72824814 | MS.gene84140:CDS |
| GTCTGGAATGCAGTGATAGA+AGG | 0.368531 | 3.1:-72825543 | None:intergenic |
| TCTTTGTCAGGCTGGAGTTA+AGG | 0.368656 | 3.1:+72824743 | MS.gene84140:CDS |
| TTCTTGCGTGGTTAGATGTC+TGG | 0.379058 | 3.1:-72825560 | None:intergenic |
| TCCTCAGTGGAGACAGCTCT+TGG | 0.384406 | 3.1:-72823139 | None:intergenic |
| TGCAAGAAATAAGCTAATAA+AGG | 0.388641 | 3.1:+72824184 | MS.gene84140:CDS |
| ATCAATGGGGTTGTTGATGA+TGG | 0.389488 | 3.1:+72825589 | MS.gene84140:CDS |
| TGCTCCGAAGAAGGCAGAAC+TGG | 0.403451 | 3.1:-72823553 | None:intergenic |
| ACCTCCAGTTCTGCCTTCTT+CGG | 0.405115 | 3.1:+72823549 | MS.gene84140:CDS |
| ATAATCTGCATCACATATAT+CGG | 0.410715 | 3.1:-72823242 | None:intergenic |
| CTTGAACATCTCTAGGGAAA+TGG | 0.415901 | 3.1:+72826407 | MS.gene84140:CDS |
| AGACAGAGGTTTGGACTTGA+TGG | 0.418320 | 3.1:+72826348 | MS.gene84140:CDS |
| CAGCCAAGACGCACAAGAAA+AGG | 0.419331 | 3.1:+72823086 | MS.gene84140:CDS |
| CCTCAAACTTGAACATCTCT+AGG | 0.422830 | 3.1:+72826400 | MS.gene84140:CDS |
| TCTATTATTTCTTCCTCCGT+TGG | 0.435604 | 3.1:-72825466 | None:intergenic |
| AATCTTCTCAATTCTACTCC+TGG | 0.438326 | 3.1:-72823458 | None:intergenic |
| GGTAAGGGTGACAGAACTTT+GGG | 0.439878 | 3.1:+72826369 | MS.gene84140:CDS |
| TTTCAAGATCTTTGTCAGGC+TGG | 0.460093 | 3.1:+72824735 | MS.gene84140:CDS |
| CGCAAGAAGAGTTTATCAAT+GGG | 0.461379 | 3.1:+72825575 | MS.gene84140:CDS |
| GAAAGCCGAAATCTCCGGTT+TGG | 0.463173 | 3.1:-72824795 | None:intergenic |
| TTGGTGATCAGACAGAGGTT+TGG | 0.464083 | 3.1:+72826339 | MS.gene84140:CDS |
| TGACAAAGATCTTGAAACCT+TGG | 0.467823 | 3.1:-72824729 | None:intergenic |
| CTGATCACCAAGTTCTCCTT+AGG | 0.468005 | 3.1:-72826327 | None:intergenic |
| GCTCAAGCATTCAGCTCGAT+TGG | 0.469057 | 3.1:+72826461 | MS.gene84140:CDS |
| AAGGTTTCAAGATCTTTGTC+AGG | 0.472724 | 3.1:+72824731 | MS.gene84140:CDS |
| TGGTAAGGGTGACAGAACTT+TGG | 0.477364 | 3.1:+72826368 | MS.gene84140:CDS |
| ATCTTCTCAATTCTACTCCT+GGG | 0.478589 | 3.1:-72823457 | None:intergenic |
| ATAACTCAATCTTAGCTCTT+CGG | 0.481173 | 3.1:-72825423 | None:intergenic |
| TCAAGTAAAGAAAGCAATAG+AGG | 0.482166 | 3.1:+72824151 | MS.gene84140:CDS |
| CATCACATATATCGGTTGTC+GGG | 0.482870 | 3.1:-72823234 | None:intergenic |
| TTACATCACGGTATCTTTCA+GGG | 0.483805 | 3.1:-72825504 | None:intergenic |
| TGTATTGAAGAGACCGTTAA+CGG | 0.487228 | 3.1:+72822988 | MS.gene84140:CDS |
| CTGATTTGGTCAGTCTAGAC+TGG | 0.488397 | 3.1:+72823512 | MS.gene84140:CDS |
| GCATCACATATATCGGTTGT+CGG | 0.491957 | 3.1:-72823235 | None:intergenic |
| TAATCCACATCCAATGAAGA+TGG | 0.497477 | 3.1:-72823169 | None:intergenic |
| TCTCGAAGGGGTAAGAAGAT+TGG | 0.504636 | 3.1:+72823289 | MS.gene84140:CDS |
| GAAGGCAACCTGCTCTACTA+AGG | 0.506636 | 3.1:+72825632 | MS.gene84140:CDS |
| AGAGCAAGCCTTAGTAGAGC+AGG | 0.510037 | 3.1:-72825640 | None:intergenic |
| GTTAACGGTCTCTTCAATAC+AGG | 0.512611 | 3.1:-72822986 | None:intergenic |
| ACGCAAGAAGAGTTTATCAA+TGG | 0.515058 | 3.1:+72825574 | MS.gene84140:CDS |
| TGAGAAGCTTGCGAGGGTCA+TGG | 0.515197 | 3.1:-72824859 | None:intergenic |
| AGATGATTTACAGAAGGAGC+TGG | 0.516579 | 3.1:+72824076 | MS.gene84140:CDS |
| GATTGGTGATGTAAGTAAAG+AGG | 0.522341 | 3.1:+72823306 | MS.gene84140:CDS |
| GAGGTTTGGACTTGATGGTA+AGG | 0.523710 | 3.1:+72826353 | MS.gene84140:CDS |
| CTGTTTCAAGCTCAGCTGCT+CGG | 0.525455 | 3.1:+72822924 | MS.gene84140:CDS |
| GACAAAGATCTTGAAACCTT+GGG | 0.527279 | 3.1:-72824728 | None:intergenic |
| GTAAAGAAAGCAATAGAGGT+TGG | 0.531566 | 3.1:+72824155 | MS.gene84140:CDS |
| TCTGAAGCCTAAGGAGAACT+TGG | 0.533811 | 3.1:+72826320 | MS.gene84140:CDS |
| GAAGATTGACGAACTTCTAA+GGG | 0.538367 | 3.1:+72823474 | MS.gene84140:CDS |
| GCTTGATTCTCTGAAGCCTA+AGG | 0.542662 | 3.1:+72826311 | MS.gene84140:intron |
| CTCAAACTTGAACATCTCTA+GGG | 0.544621 | 3.1:+72826401 | MS.gene84140:CDS |
| AGTTATCATTTCAGCTTCAG+AGG | 0.545216 | 3.1:+72825440 | MS.gene84140:CDS |
| ACCAGAAAACAAAAGCCAAA+CGG | 0.546934 | 3.1:+72823356 | MS.gene84140:CDS |
| CAAGTTGATGCAACCAATGA+AGG | 0.548325 | 3.1:+72823588 | MS.gene84140:CDS |
| GGAGCTGGAAAGAGAGCCTA+CGG | 0.552589 | 3.1:+72824091 | MS.gene84140:CDS |
| AAGATACCGTGATGTAATGA+AGG | 0.553790 | 3.1:+72825510 | MS.gene84140:CDS |
| TGTTCCCTTTGGACTTGAGT+CGG | 0.554834 | 3.1:+72824884 | MS.gene84140:CDS |
| AATGGGGTTGTTGATGATGG+TGG | 0.565643 | 3.1:+72825592 | MS.gene84140:CDS |
| AGAGGATTTAAACAGTGATA+GGG | 0.568935 | 3.1:+72823324 | MS.gene84140:CDS |
| AGTGAAAGATGATTTACAGA+AGG | 0.573532 | 3.1:+72824070 | MS.gene84140:CDS |
| TCTGGAATGCAGTGATAGAA+GGG | 0.574183 | 3.1:-72825542 | None:intergenic |
| TCAGCTGCTCGGACTCCACT+AGG | 0.575229 | 3.1:+72822935 | MS.gene84140:CDS |
| CATACCGACTCAAGTCCAAA+GGG | 0.580195 | 3.1:-72824888 | None:intergenic |
| GGTGAGAAAACACGAAGTCA+AGG | 0.584758 | 3.1:+72826428 | MS.gene84140:CDS |
| GAACACGTGAGAAGCTTGCG+AGG | 0.589931 | 3.1:-72824866 | None:intergenic |
| AGGTTGAAAGCCGAAATCTC+CGG | 0.593857 | 3.1:-72824800 | None:intergenic |
| GTGTTGATGGCGATAACAGA+AGG | 0.598234 | 3.1:+72825614 | MS.gene84140:CDS |
| GATCAAAAGAGTCTCTCGAA+GGG | 0.598531 | 3.1:+72823276 | MS.gene84140:CDS |
| AACTTTGTATTCAATCCTAG+TGG | 0.599283 | 3.1:-72822950 | None:intergenic |
| AGGTTTGGACTTGATGGTAA+GGG | 0.603110 | 3.1:+72826354 | MS.gene84140:CDS |
| TCAGCTATTTCATCCTCCGT+AGG | 0.604604 | 3.1:-72824107 | None:intergenic |
| TCTAAGGGAATACTCAGTAC+CGG | 0.605704 | 3.1:+72823489 | MS.gene84140:CDS |
| AGCTTGCGAGGGTCATGGAA+CGG | 0.606319 | 3.1:-72824854 | None:intergenic |
| ACATACCGACTCAAGTCCAA+AGG | 0.607252 | 3.1:-72824889 | None:intergenic |
| TTGATGCCTTCATTACATCA+CGG | 0.616848 | 3.1:-72825516 | None:intergenic |
| TACATCACGGTATCTTTCAG+GGG | 0.616885 | 3.1:-72825503 | None:intergenic |
| AACGGATGAATCTTGATGAG+AGG | 0.617893 | 3.1:+72823374 | MS.gene84140:CDS |
| ATTGATAAACTCTTCTTGCG+TGG | 0.621610 | 3.1:-72825572 | None:intergenic |
| AGATCAAAAGAGTCTCTCGA+AGG | 0.624213 | 3.1:+72823275 | MS.gene84140:CDS |
| TCTTATCCAAAACAGACTGT+AGG | 0.625554 | 3.1:-72824820 | None:intergenic |
| AAGGCTTGCTCTTGATGATG+TGG | 0.625750 | 3.1:+72825651 | MS.gene84140:CDS |
| GTGAAGATGTCATTCCAACT+CGG | 0.626818 | 3.1:+72823422 | MS.gene84140:CDS |
| TAAACAGAATGACACAGCGT+TGG | 0.627600 | 3.1:+72823027 | MS.gene84140:CDS |
| TCCGAAGAAGGCAGAACTGG+AGG | 0.632944 | 3.1:-72823550 | None:intergenic |
| TCAGCTTCAGAGGTCACCAA+CGG | 0.634098 | 3.1:+72825450 | MS.gene84140:CDS |
| GGATTTAAACAGTGATAGGG+TGG | 0.634412 | 3.1:+72823327 | MS.gene84140:CDS |
| TGATCACGAACAAGACAAGC+CGG | 0.636977 | 3.1:-72824677 | None:intergenic |
| TCTAGACTGACCAAATCAGC+CGG | 0.641619 | 3.1:-72823508 | None:intergenic |
| ATCAAAAGAGTCTCTCGAAG+GGG | 0.655049 | 3.1:+72823277 | MS.gene84140:CDS |
| CTGGAATGCAGTGATAGAAG+GGG | 0.661695 | 3.1:-72825541 | None:intergenic |
| AACACGTGAGAAGCTTGCGA+GGG | 0.668557 | 3.1:-72824865 | None:intergenic |
| ACGGTCTCTTCAATACAGGA+TGG | 0.670415 | 3.1:-72822982 | None:intergenic |
| GCTTCAGAGGTCACCAACGG+AGG | 0.677471 | 3.1:+72825453 | MS.gene84140:CDS |
| AGAACTTGGTGATCAGACAG+AGG | 0.691541 | 3.1:+72826334 | MS.gene84140:CDS |
| GCAAGAAGAGTTTATCAATG+GGG | 0.710931 | 3.1:+72825576 | MS.gene84140:CDS |
| ACCAAGAGCTGTCTCCACTG+AGG | 0.712371 | 3.1:+72823138 | MS.gene84140:CDS |
| GCTGGAAAGAGAGCCTACGG+AGG | 0.718077 | 3.1:+72824094 | MS.gene84140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGTGAAATATCATT+AGG | + | chr3.1:72825829-72825848 | MS.gene84140:intron | 15.0% |
| !! | CAATTTATTACAATACATAT+AGG | - | chr3.1:72825074-72825093 | None:intergenic | 15.0% |
| !! | TTACATCAATAATTAAGAAA+TGG | + | chr3.1:72824625-72824644 | MS.gene84140:intron | 15.0% |
| !!! | TTTGTATATATTTTCAAGTA+TGG | - | chr3.1:72823209-72823228 | None:intergenic | 15.0% |
| !! | CAATGAAAATATTATTGGAT+CGG | - | chr3.1:72825252-72825271 | None:intergenic | 20.0% |
| !! | GACTTTGTAATCTTTAAATT+TGG | + | chr3.1:72824566-72824585 | MS.gene84140:intron | 20.0% |
| !! | TGAAATTCATGCATATAATA+TGG | + | chr3.1:72823837-72823856 | MS.gene84140:intron | 20.0% |
| !! | TTTATTACAATACATATAGG+TGG | - | chr3.1:72825071-72825090 | None:intergenic | 20.0% |
| !!! | AGATACATTTGTTAATTTTC+AGG | + | chr3.1:72824037-72824056 | MS.gene84140:intron | 20.0% |
| ! | AAAGTCATCAGAAATTTCAA+TGG | - | chr3.1:72824552-72824571 | None:intergenic | 25.0% |
| ! | AACAATATCACTAAAAAGAG+AGG | - | chr3.1:72824592-72824611 | None:intergenic | 25.0% |
| ! | ATAATCTGCATCACATATAT+CGG | - | chr3.1:72823245-72823264 | None:intergenic | 25.0% |
| ! | ATATGGTTTAATGAAACTGT+TGG | - | chr3.1:72826099-72826118 | None:intergenic | 25.0% |
| ! | CAACAATATTTCCAATATAG+TGG | + | chr3.1:72823965-72823984 | MS.gene84140:intron | 25.0% |
| ! | CAGTTTCATTAAACCATATT+TGG | + | chr3.1:72826100-72826119 | MS.gene84140:intron | 25.0% |
| ! | CATCAATAATTAAGAAATGG+TGG | + | chr3.1:72824628-72824647 | MS.gene84140:intron | 25.0% |
| ! | TATTGGAAATATTGTTGACA+TGG | - | chr3.1:72823962-72823981 | None:intergenic | 25.0% |
| ! | TATTGTAAACAGTGTACATT+AGG | + | chr3.1:72825743-72825762 | MS.gene84140:intron | 25.0% |
| ! | TGCAAGAAATAAGCTAATAA+AGG | + | chr3.1:72824184-72824203 | MS.gene84140:CDS | 25.0% |
| ! | TGGGATATTCAAAGAAAATA+TGG | + | chr3.1:72825307-72825326 | MS.gene84140:intron | 25.0% |
| ! | TTGGCCAATGAAAATATTAT+TGG | - | chr3.1:72825257-72825276 | None:intergenic | 25.0% |
| !! | AAATTCGATTTGTGATACTT+CGG | + | chr3.1:72825108-72825127 | MS.gene84140:intron | 25.0% |
| !! | ACTTAACATTGTTTCTCTTA+AGG | + | chr3.1:72825939-72825958 | MS.gene84140:intron | 25.0% |
| !! | ATATTTTCTTTGAATATCCC+AGG | - | chr3.1:72825308-72825327 | None:intergenic | 25.0% |
| !! | CGATCCAATAATATTTTCAT+TGG | + | chr3.1:72825250-72825269 | MS.gene84140:intron | 25.0% |
| !! | GTTTTTAAATTGTGCGATTA+AGG | + | chr3.1:72826185-72826204 | MS.gene84140:intron | 25.0% |
| !! | TATTTTCATTGGCCAATAAT+TGG | + | chr3.1:72825261-72825280 | MS.gene84140:intron | 25.0% |
| !!! | CTCTTTTTAGTGATATTGTT+TGG | + | chr3.1:72824592-72824611 | MS.gene84140:intron | 25.0% |
| AAAACAATAATCAGCATGTG+TGG | - | chr3.1:72824928-72824947 | None:intergenic | 30.0% | |
| AACATCATTGACCACTATAT+TGG | - | chr3.1:72823979-72823998 | None:intergenic | 30.0% | |
| AACTTTGTATTCAATCCTAG+TGG | - | chr3.1:72822953-72822972 | None:intergenic | 30.0% | |
| AAGAGGATTTAAACAGTGAT+AGG | + | chr3.1:72823323-72823342 | MS.gene84140:CDS | 30.0% | |
| ACTACTATTGCTGTGAATAT+TGG | - | chr3.1:72824466-72824485 | None:intergenic | 30.0% | |
| ACTAGTTCACATCTAATGAT+TGG | - | chr3.1:72826167-72826186 | None:intergenic | 30.0% | |
| ACTATACAAGATTTAAGCCT+GGG | + | chr3.1:72825288-72825307 | MS.gene84140:intron | 30.0% | |
| AGAGGATTTAAACAGTGATA+GGG | + | chr3.1:72823324-72823343 | MS.gene84140:CDS | 30.0% | |
| AGTCAACTCAACTTATGATA+GGG | + | chr3.1:72824303-72824322 | MS.gene84140:intron | 30.0% | |
| AGTGAAAGATGATTTACAGA+AGG | + | chr3.1:72824070-72824089 | MS.gene84140:CDS | 30.0% | |
| AGTGTACATTAGGTATTTGT+TGG | + | chr3.1:72825753-72825772 | MS.gene84140:intron | 30.0% | |
| AGTTGAGTTTACATGGTTAT+AGG | + | chr3.1:72824513-72824532 | MS.gene84140:intron | 30.0% | |
| ATATAGTGGTCAATGATGTT+AGG | + | chr3.1:72823979-72823998 | MS.gene84140:intron | 30.0% | |
| ATCAAACATTAGTTGCTAAG+AGG | - | chr3.1:72826273-72826292 | None:intergenic | 30.0% | |
| ATCAGAAATTTCAATGGAAG+AGG | - | chr3.1:72824546-72824565 | None:intergenic | 30.0% | |
| ATCTAACTAATGAGTTCTTC+TGG | + | chr3.1:72824276-72824295 | MS.gene84140:intron | 30.0% | |
| ATGAACTTGAGTGATTGATT+TGG | + | chr3.1:72825356-72825375 | MS.gene84140:intron | 30.0% | |
| CTAGTTCACATCTAATGATT+GGG | - | chr3.1:72826166-72826185 | None:intergenic | 30.0% | |
| CTATAAATCATGTCTCATCA+AGG | - | chr3.1:72826133-72826152 | None:intergenic | 30.0% | |
| CTGCTATTAAGAATTTAAGG+CGG | + | chr3.1:72826068-72826087 | MS.gene84140:intron | 30.0% | |
| GAGTAAATTGAAAGAAAGTG+TGG | - | chr3.1:72823647-72823666 | None:intergenic | 30.0% | |
| GATGTAAAAATAACTGCTGT+AGG | + | chr3.1:72825028-72825047 | MS.gene84140:intron | 30.0% | |
| GGACTGCTATTAAGAATTTA+AGG | + | chr3.1:72826065-72826084 | MS.gene84140:intron | 30.0% | |
| GTAAATCATCTTTCACTTGA+AGG | - | chr3.1:72824067-72824086 | None:intergenic | 30.0% | |
| GTATCAAACAGAGACATAAA+AGG | - | chr3.1:72825689-72825708 | None:intergenic | 30.0% | |
| TAGTCAACTCAACTTATGAT+AGG | + | chr3.1:72824302-72824321 | MS.gene84140:intron | 30.0% | |
| TATATGCATGAATTTCAGCA+TGG | - | chr3.1:72823834-72823853 | None:intergenic | 30.0% | |
| TCAAACATTAGTTGCTAAGA+GGG | - | chr3.1:72826272-72826291 | None:intergenic | 30.0% | |
| TCAACTTATGATAGGGATTT+AGG | + | chr3.1:72824310-72824329 | MS.gene84140:intron | 30.0% | |
| TCAAGTAAAGAAAGCAATAG+AGG | + | chr3.1:72824151-72824170 | MS.gene84140:CDS | 30.0% | |
| TGTATAGTCCTACCAATTAT+TGG | - | chr3.1:72825276-72825295 | None:intergenic | 30.0% | |
| ! | AATTCGATTTGTGATACTTC+GGG | + | chr3.1:72825109-72825128 | MS.gene84140:intron | 30.0% |
| ! | ATAACTCAATCTTAGCTCTT+CGG | - | chr3.1:72825426-72825445 | None:intergenic | 30.0% |
| ! | GGAAAATTTTCCATCTTCAT+TGG | + | chr3.1:72823159-72823178 | MS.gene84140:CDS | 30.0% |
| ! | TGAACTTGAGTGATTGATTT+GGG | + | chr3.1:72825357-72825376 | MS.gene84140:intron | 30.0% |
| ! | TGTTCAATTCTTTTACAGCT+TGG | + | chr3.1:72824217-72824236 | MS.gene84140:intron | 30.0% |
| !!! | GGTATCTTTTAATTTTGTGC+AGG | + | chr3.1:72825387-72825406 | MS.gene84140:intron | 30.0% |
| AAATCATGTCTCATCAAGGA+AGG | - | chr3.1:72826129-72826148 | None:intergenic | 35.0% | |
| AAGATACCGTGATGTAATGA+AGG | + | chr3.1:72825510-72825529 | MS.gene84140:CDS | 35.0% | |
| AAGGTTTCAAGATCTTTGTC+AGG | + | chr3.1:72824731-72824750 | MS.gene84140:CDS | 35.0% | |
| AATCTTCTCAATTCTACTCC+TGG | - | chr3.1:72823461-72823480 | None:intergenic | 35.0% | |
| ACCAGAAAACAAAAGCCAAA+CGG | + | chr3.1:72823356-72823375 | MS.gene84140:CDS | 35.0% | |
| ACCATGAAGTTGAGTTTACA+TGG | + | chr3.1:72824506-72824525 | MS.gene84140:intron | 35.0% | |
| ACCATGTAAACTCAACTTCA+TGG | - | chr3.1:72824510-72824529 | None:intergenic | 35.0% | |
| ACGCAAGAAGAGTTTATCAA+TGG | + | chr3.1:72825574-72825593 | MS.gene84140:CDS | 35.0% | |
| AGAAGATTGACGAACTTCTA+AGG | + | chr3.1:72823473-72823492 | MS.gene84140:CDS | 35.0% | |
| AGTCATATTTGGCGAATTCA+TGG | + | chr3.1:72824398-72824417 | MS.gene84140:intron | 35.0% | |
| AGTTATCATTTCAGCTTCAG+AGG | + | chr3.1:72825440-72825459 | MS.gene84140:CDS | 35.0% | |
| ATCTTCTCAATTCTACTCCT+GGG | - | chr3.1:72823460-72823479 | None:intergenic | 35.0% | |
| ATTACATCACGGTATCTTTC+AGG | - | chr3.1:72825508-72825527 | None:intergenic | 35.0% | |
| ATTGATAAACTCTTCTTGCG+TGG | - | chr3.1:72825575-72825594 | None:intergenic | 35.0% | |
| CCTTTAAATGCTACCGTTAA+CGG | - | chr3.1:72823004-72823023 | None:intergenic | 35.0% | |
| CGCAAGAAGAGTTTATCAAT+GGG | + | chr3.1:72825575-72825594 | MS.gene84140:CDS | 35.0% | |
| CTATCTCCTTCTAACTTTGA+TGG | + | chr3.1:72824426-72824445 | MS.gene84140:intron | 35.0% | |
| CTCAAACTTGAACATCTCTA+GGG | + | chr3.1:72826401-72826420 | MS.gene84140:CDS | 35.0% | |
| CTTGATAAGCAAGGAATTCA+AGG | + | chr3.1:72823927-72823946 | MS.gene84140:intron | 35.0% | |
| GAAGATTGACGAACTTCTAA+GGG | + | chr3.1:72823474-72823493 | MS.gene84140:CDS | 35.0% | |
| GACAAAGATCTTGAAACCTT+GGG | - | chr3.1:72824731-72824750 | None:intergenic | 35.0% | |
| GACTATACAAGATTTAAGCC+TGG | + | chr3.1:72825287-72825306 | MS.gene84140:intron | 35.0% | |
| GATGTTGGAGTATGCAATTA+AGG | + | chr3.1:72826008-72826027 | MS.gene84140:intron | 35.0% | |
| GCAAGAAGAGTTTATCAATG+GGG | + | chr3.1:72825576-72825595 | MS.gene84140:CDS | 35.0% | |
| GTAAAGAAAGCAATAGAGGT+TGG | + | chr3.1:72824155-72824174 | MS.gene84140:CDS | 35.0% | |
| GTCATATTTGGCGAATTCAT+GGG | + | chr3.1:72824399-72824418 | MS.gene84140:intron | 35.0% | |
| GTTTCTCCATCAAAGTTAGA+AGG | - | chr3.1:72824435-72824454 | None:intergenic | 35.0% | |
| TAATCCACATCCAATGAAGA+TGG | - | chr3.1:72823172-72823191 | None:intergenic | 35.0% | |
| TCAACGATATCATACTTCCA+TGG | + | chr3.1:72826238-72826257 | MS.gene84140:intron | 35.0% | |
| TCATATTTGGCGAATTCATG+GGG | + | chr3.1:72824400-72824419 | MS.gene84140:intron | 35.0% | |
| TCTTATCCAAAACAGACTGT+AGG | - | chr3.1:72824823-72824842 | None:intergenic | 35.0% | |
| TGACAAAGATCTTGAAACCT+TGG | - | chr3.1:72824732-72824751 | None:intergenic | 35.0% | |
| TGTATTGAAGAGACCGTTAA+CGG | + | chr3.1:72822988-72823007 | MS.gene84140:CDS | 35.0% | |
| TTACATCACGGTATCTTTCA+GGG | - | chr3.1:72825507-72825526 | None:intergenic | 35.0% | |
| TTCAACCTAATGGCTTAAGT+TGG | + | chr3.1:72823713-72823732 | MS.gene84140:intron | 35.0% | |
| TTCATTGGCCAATAATTGGT+AGG | + | chr3.1:72825265-72825284 | MS.gene84140:intron | 35.0% | |
| TTGAAGGACGAATAAAGCAA+AGG | + | chr3.1:72823799-72823818 | MS.gene84140:intron | 35.0% | |
| TTGATGCCTTCATTACATCA+CGG | - | chr3.1:72825519-72825538 | None:intergenic | 35.0% | |
| TTTCTTCGCTAGAAATAGCA+GGG | + | chr3.1:72825137-72825156 | MS.gene84140:intron | 35.0% | |
| ! | AGAGTGTCTACAGTCATATT+TGG | + | chr3.1:72824387-72824406 | MS.gene84140:intron | 35.0% |
| ! | AGATGGAAAATTTTCCTCAG+TGG | - | chr3.1:72823155-72823174 | None:intergenic | 35.0% |
| ! | GTTGTCGTAAACAGTTTTCT+CGG | - | chr3.1:72825000-72825019 | None:intergenic | 35.0% |
| ! | TCTATTATTTCTTCCTCCGT+TGG | - | chr3.1:72825469-72825488 | None:intergenic | 35.0% |
| ! | TTGTCGTAAACAGTTTTCTC+GGG | - | chr3.1:72824999-72825018 | None:intergenic | 35.0% |
| ! | TTTCAACCTACAGTCTGTTT+TGG | + | chr3.1:72824814-72824833 | MS.gene84140:CDS | 35.0% |
| ! | TTTTCCATCTTCATTGGATG+TGG | + | chr3.1:72823165-72823184 | MS.gene84140:CDS | 35.0% |
| !! | GATTGGTGATGTAAGTAAAG+AGG | + | chr3.1:72823306-72823325 | MS.gene84140:CDS | 35.0% |
| !!! | GGATTTCTTTTTTTCCGAGT+TGG | - | chr3.1:72823439-72823458 | None:intergenic | 35.0% |
| !!! | TGGCTTTTGTTTTCTGGTTT+CGG | - | chr3.1:72823354-72823373 | None:intergenic | 35.0% |
| AAAAATGCATGCTCCGAAGA+AGG | - | chr3.1:72823565-72823584 | None:intergenic | 40.0% | |
| AACACACACAATGACGATGT+TGG | + | chr3.1:72825993-72826012 | MS.gene84140:intron | 40.0% | |
| AACATCGTCATTGTGTGTGT+TGG | - | chr3.1:72825994-72826013 | None:intergenic | 40.0% | |
| AACGGATGAATCTTGATGAG+AGG | + | chr3.1:72823374-72823393 | MS.gene84140:CDS | 40.0% | |
| AATGAGCTTCTCACCTTCAT+TGG | - | chr3.1:72823604-72823623 | None:intergenic | 40.0% | |
| ACATCGTCATTGTGTGTGTT+GGG | - | chr3.1:72825993-72826012 | None:intergenic | 40.0% | |
| ACTTGCCAACTTAAGCCATT+AGG | - | chr3.1:72823721-72823740 | None:intergenic | 40.0% | |
| ACTTTGATGGAGAAACTCGA+TGG | + | chr3.1:72824439-72824458 | MS.gene84140:intron | 40.0% | |
| AGATCAAAAGAGTCTCTCGA+AGG | + | chr3.1:72823275-72823294 | MS.gene84140:CDS | 40.0% | |
| AGATGATTTACAGAAGGAGC+TGG | + | chr3.1:72824076-72824095 | MS.gene84140:CDS | 40.0% | |
| ATCAAAAGAGTCTCTCGAAG+GGG | + | chr3.1:72823277-72823296 | MS.gene84140:CDS | 40.0% | |
| CAAGTAGCTGAGACTGAAAA+TGG | - | chr3.1:72825203-72825222 | None:intergenic | 40.0% | |
| CCGTTAACGGTAGCATTTAA+AGG | + | chr3.1:72823001-72823020 | MS.gene84140:CDS | 40.0% | |
| CCTCAAACTTGAACATCTCT+AGG | + | chr3.1:72826400-72826419 | MS.gene84140:CDS | 40.0% | |
| CTCATCAAGATTCATCCGTT+TGG | - | chr3.1:72823374-72823393 | None:intergenic | 40.0% | |
| CTCGGAAAAAAAGAAATCCC+AGG | + | chr3.1:72823440-72823459 | MS.gene84140:CDS | 40.0% | |
| CTTTCTTCGCTAGAAATAGC+AGG | + | chr3.1:72825136-72825155 | MS.gene84140:intron | 40.0% | |
| GATCAAAAGAGTCTCTCGAA+GGG | + | chr3.1:72823276-72823295 | MS.gene84140:CDS | 40.0% | |
| GCAAGATGCTTTCAACCTAA+TGG | + | chr3.1:72823703-72823722 | MS.gene84140:intron | 40.0% | |
| GGATTTAAACAGTGATAGGG+TGG | + | chr3.1:72823327-72823346 | MS.gene84140:CDS | 40.0% | |
| GTGAAGATGTCATTCCAACT+CGG | + | chr3.1:72823422-72823441 | MS.gene84140:CDS | 40.0% | |
| GTTAACGGTCTCTTCAATAC+AGG | - | chr3.1:72822989-72823008 | None:intergenic | 40.0% | |
| GTTGGAGTATGCAATTAAGG+CGG | + | chr3.1:72826011-72826030 | MS.gene84140:intron | 40.0% | |
| TAAACAGAATGACACAGCGT+TGG | + | chr3.1:72823027-72823046 | MS.gene84140:CDS | 40.0% | |
| TACATCACGGTATCTTTCAG+GGG | - | chr3.1:72825506-72825525 | None:intergenic | 40.0% | |
| TATCACGAGCTGCTAAAAGT+TGG | + | chr3.1:72825780-72825799 | MS.gene84140:intron | 40.0% | |
| TCAAGGAAGGACACCAAATA+TGG | - | chr3.1:72826116-72826135 | None:intergenic | 40.0% | |
| TCAGTCTCAGCTACTTGTAA+GGG | + | chr3.1:72825206-72825225 | MS.gene84140:intron | 40.0% | |
| TCATTACACTTGCTCGAACT+TGG | - | chr3.1:72825903-72825922 | None:intergenic | 40.0% | |
| TCTAAGGGAATACTCAGTAC+CGG | + | chr3.1:72823489-72823508 | MS.gene84140:CDS | 40.0% | |
| TGACTGTAGACACTCTATTG+AGG | - | chr3.1:72824383-72824402 | None:intergenic | 40.0% | |
| TTCAGTCTCAGCTACTTGTA+AGG | + | chr3.1:72825205-72825224 | MS.gene84140:intron | 40.0% | |
| TTTCAAGATCTTTGTCAGGC+TGG | + | chr3.1:72824735-72824754 | MS.gene84140:CDS | 40.0% | |
| TTTCATGTTAACTCCCTCTG+AGG | + | chr3.1:72823769-72823788 | MS.gene84140:intron | 40.0% | |
| ! | AGGGATTTAGGACTGAGTAA+CGG | + | chr3.1:72824322-72824341 | MS.gene84140:intron | 40.0% |
| ! | AGGTTTGGACTTGATGGTAA+GGG | + | chr3.1:72826354-72826373 | MS.gene84140:CDS | 40.0% |
| ! | ATCAATGGGGTTGTTGATGA+TGG | + | chr3.1:72825589-72825608 | MS.gene84140:CDS | 40.0% |
| ! | ATCTTTTGCAGCACAATCTC+CGG | + | chr3.1:72824658-72824677 | MS.gene84140:intron | 40.0% |
| ! | CAGATTTTGCTAATAGCCCA+AGG | + | chr3.1:72824712-72824731 | MS.gene84140:CDS | 40.0% |
| ! | CATCACATATATCGGTTGTC+GGG | - | chr3.1:72823237-72823256 | None:intergenic | 40.0% |
| ! | CCTAGAGATGTTCAAGTTTG+AGG | - | chr3.1:72826403-72826422 | None:intergenic | 40.0% |
| ! | CTTGAACATCTCTAGGGAAA+TGG | + | chr3.1:72826407-72826426 | MS.gene84140:CDS | 40.0% |
| ! | GCATCACATATATCGGTTGT+CGG | - | chr3.1:72823238-72823257 | None:intergenic | 40.0% |
| ! | TATCCTTTTCTTGTGCGTCT+TGG | - | chr3.1:72823092-72823111 | None:intergenic | 40.0% |
| ! | TCTGGAATGCAGTGATAGAA+GGG | - | chr3.1:72825545-72825564 | None:intergenic | 40.0% |
| !! | CAAGTTGATGCAACCAATGA+AGG | + | chr3.1:72823588-72823607 | MS.gene84140:CDS | 40.0% |
| !! | CTGAGTAACGGTCATTTTCA+TGG | + | chr3.1:72824334-72824353 | MS.gene84140:intron | 40.0% |
| !! | TGCTCTTGATGATGTGGTAA+TGG | + | chr3.1:72825657-72825676 | MS.gene84140:intron | 40.0% |
| !! | TTGATCGTTTTGAGCCAAAC+CGG | + | chr3.1:72824781-72824800 | MS.gene84140:CDS | 40.0% |
| !!! | TCCGTTTGGCTTTTGTTTTC+TGG | - | chr3.1:72823360-72823379 | None:intergenic | 40.0% |
| !!! | TTGGCTGTTTTAACTTGCGT+AGG | - | chr3.1:72823073-72823092 | None:intergenic | 40.0% |
| ACGGTCTCTTCAATACAGGA+TGG | - | chr3.1:72822985-72823004 | None:intergenic | 45.0% | |
| AGACAGAGGTTTGGACTTGA+TGG | + | chr3.1:72826348-72826367 | MS.gene84140:CDS | 45.0% | |
| AGGTTGAAAGCCGAAATCTC+CGG | - | chr3.1:72824803-72824822 | None:intergenic | 45.0% | |
| ATGCAATTAAGGCGGCCTAA+AGG | + | chr3.1:72826019-72826038 | MS.gene84140:intron | 45.0% | |
| CTAAGAGGGACAAATGACCA+TGG | - | chr3.1:72826258-72826277 | None:intergenic | 45.0% | |
| CTGATCACCAAGTTCTCCTT+AGG | - | chr3.1:72826330-72826349 | None:intergenic | 45.0% | |
| CTGGAATGCAGTGATAGAAG+GGG | - | chr3.1:72825544-72825563 | None:intergenic | 45.0% | |
| CTTTGTCAGGCTGGAGTTAA+GGG | + | chr3.1:72824744-72824763 | MS.gene84140:CDS | 45.0% | |
| GAGACAGCTCTTGGTTTCTT+AGG | - | chr3.1:72823133-72823152 | None:intergenic | 45.0% | |
| GGTAAGGGTGACAGAACTTT+GGG | + | chr3.1:72826369-72826388 | MS.gene84140:CDS | 45.0% | |
| GGTGAGAAAACACGAAGTCA+AGG | + | chr3.1:72826428-72826447 | MS.gene84140:CDS | 45.0% | |
| TCTAGACTGACCAAATCAGC+CGG | - | chr3.1:72823511-72823530 | None:intergenic | 45.0% | |
| TCTCGAAGGGGTAAGAAGAT+TGG | + | chr3.1:72823289-72823308 | MS.gene84140:CDS | 45.0% | |
| TCTTTGTCAGGCTGGAGTTA+AGG | + | chr3.1:72824743-72824762 | MS.gene84140:CDS | 45.0% | |
| TGATCACGAACAAGACAAGC+CGG | - | chr3.1:72824680-72824699 | None:intergenic | 45.0% | |
| TGGTAAGGGTGACAGAACTT+TGG | + | chr3.1:72826368-72826387 | MS.gene84140:CDS | 45.0% | |
| TGTTCCCTTTGGACTTGAGT+CGG | + | chr3.1:72824884-72824903 | MS.gene84140:CDS | 45.0% | |
| TTCCAGCGACTTGATAAGCA+AGG | + | chr3.1:72823918-72823937 | MS.gene84140:intron | 45.0% | |
| TTCCTTGCTTATCAAGTCGC+TGG | - | chr3.1:72823923-72823942 | None:intergenic | 45.0% | |
| TTCTTGCGTGGTTAGATGTC+TGG | - | chr3.1:72825563-72825582 | None:intergenic | 45.0% | |
| TTGAGCCAAACCGGAGATTT+CGG | + | chr3.1:72824790-72824809 | MS.gene84140:CDS | 45.0% | |
| ! | AGAACTTGGTGATCAGACAG+AGG | + | chr3.1:72826334-72826353 | MS.gene84140:CDS | 45.0% |
| ! | CTTCAAGTTCAGACCTCAGA+GGG | - | chr3.1:72823785-72823804 | None:intergenic | 45.0% |
| ! | GAGGTTTGGACTTGATGGTA+AGG | + | chr3.1:72826353-72826372 | MS.gene84140:CDS | 45.0% |
| ! | GTCTGGAATGCAGTGATAGA+AGG | - | chr3.1:72825546-72825565 | None:intergenic | 45.0% |
| ! | TCAGCTATTTCATCCTCCGT+AGG | - | chr3.1:72824110-72824129 | None:intergenic | 45.0% |
| ! | TCTGAAGCCTAAGGAGAACT+TGG | + | chr3.1:72826320-72826339 | MS.gene84140:CDS | 45.0% |
| ! | TTGGTGATCAGACAGAGGTT+TGG | + | chr3.1:72826339-72826358 | MS.gene84140:CDS | 45.0% |
| !! | AAGGCTTGCTCTTGATGATG+TGG | + | chr3.1:72825651-72825670 | MS.gene84140:CDS | 45.0% |
| !! | AATGGGGTTGTTGATGATGG+TGG | + | chr3.1:72825592-72825611 | MS.gene84140:CDS | 45.0% |
| !! | ACATACCGACTCAAGTCCAA+AGG | - | chr3.1:72824892-72824911 | None:intergenic | 45.0% |
| !! | ATACTCAGTACCGGCTGATT+TGG | + | chr3.1:72823498-72823517 | MS.gene84140:CDS | 45.0% |
| !! | CATACCGACTCAAGTCCAAA+GGG | - | chr3.1:72824891-72824910 | None:intergenic | 45.0% |
| !! | CTGATTTGGTCAGTCTAGAC+TGG | + | chr3.1:72823512-72823531 | MS.gene84140:CDS | 45.0% |
| !! | GCTTGATTCTCTGAAGCCTA+AGG | + | chr3.1:72826311-72826330 | MS.gene84140:intron | 45.0% |
| !! | GTGATTGATTTGGGTGTGTC+TGG | + | chr3.1:72825366-72825385 | MS.gene84140:intron | 45.0% |
| !! | GTGTTGATGGCGATAACAGA+AGG | + | chr3.1:72825614-72825633 | MS.gene84140:CDS | 45.0% |
| !! | GTTGATGATGGTGGTGTTGA+TGG | + | chr3.1:72825601-72825620 | MS.gene84140:CDS | 45.0% |
| !! | TGGCTTAAGTTGGCAAGTCA+AGG | + | chr3.1:72823723-72823742 | MS.gene84140:intron | 45.0% |
| AACACGTGAGAAGCTTGCGA+GGG | - | chr3.1:72824868-72824887 | None:intergenic | 50.0% | |
| ACCTCCAGTTCTGCCTTCTT+CGG | + | chr3.1:72823549-72823568 | MS.gene84140:CDS | 50.0% | |
| AGAGCAAGCCTTAGTAGAGC+AGG | - | chr3.1:72825643-72825662 | None:intergenic | 50.0% | |
| AGCTTCTCACGTGTTCCCTT+TGG | + | chr3.1:72824873-72824892 | MS.gene84140:CDS | 50.0% | |
| CAGCCAAGACGCACAAGAAA+AGG | + | chr3.1:72823086-72823105 | MS.gene84140:CDS | 50.0% | |
| CTGTTTCAAGCTCAGCTGCT+CGG | + | chr3.1:72822924-72822943 | MS.gene84140:CDS | 50.0% | |
| GAAAGCCGAAATCTCCGGTT+TGG | - | chr3.1:72824798-72824817 | None:intergenic | 50.0% | |
| GAAGGCAACCTGCTCTACTA+AGG | + | chr3.1:72825632-72825651 | MS.gene84140:CDS | 50.0% | |
| GCTCAAGCATTCAGCTCGAT+TGG | + | chr3.1:72826461-72826480 | MS.gene84140:CDS | 50.0% | |
| GTCATTGTGTGTGTTGGGTG+TGG | - | chr3.1:72825988-72826007 | None:intergenic | 50.0% | |
| TCAGCTTCAGAGGTCACCAA+CGG | + | chr3.1:72825450-72825469 | MS.gene84140:CDS | 50.0% | |
| ! | CCTTCAAGTTCAGACCTCAG+AGG | - | chr3.1:72823786-72823805 | None:intergenic | 50.0% |
| !! | CCTCTGAGGTCTGAACTTGA+AGG | + | chr3.1:72823783-72823802 | MS.gene84140:intron | 50.0% |
| ACCAAGAGCTGTCTCCACTG+AGG | + | chr3.1:72823138-72823157 | MS.gene84140:CDS | 55.0% | |
| AGCTTGCGAGGGTCATGGAA+CGG | - | chr3.1:72824857-72824876 | None:intergenic | 55.0% | |
| CAGCCTTAGCTGAGGCCTTT+AGG | - | chr3.1:72826037-72826056 | None:intergenic | 55.0% | |
| GAACACGTGAGAAGCTTGCG+AGG | - | chr3.1:72824869-72824888 | None:intergenic | 55.0% | |
| GGAGCTGGAAAGAGAGCCTA+CGG | + | chr3.1:72824091-72824110 | MS.gene84140:CDS | 55.0% | |
| TCCGAAGAAGGCAGAACTGG+AGG | - | chr3.1:72823553-72823572 | None:intergenic | 55.0% | |
| TCCTCAGTGGAGACAGCTCT+TGG | - | chr3.1:72823142-72823161 | None:intergenic | 55.0% | |
| TGAGAAGCTTGCGAGGGTCA+TGG | - | chr3.1:72824862-72824881 | None:intergenic | 55.0% | |
| TGCTCCGAAGAAGGCAGAAC+TGG | - | chr3.1:72823556-72823575 | None:intergenic | 55.0% | |
| ACCCCAAGCAGCCTTAGCTG+AGG | - | chr3.1:72826045-72826064 | None:intergenic | 60.0% | |
| AGGCCTCAGCTAAGGCTGCT+TGG | + | chr3.1:72826039-72826058 | MS.gene84140:intron | 60.0% | |
| CGGCCTAAAGGCCTCAGCTA+AGG | + | chr3.1:72826031-72826050 | MS.gene84140:intron | 60.0% | |
| GCCTCAGCTAAGGCTGCTTG+GGG | + | chr3.1:72826041-72826060 | MS.gene84140:intron | 60.0% | |
| GCTGGAAAGAGAGCCTACGG+AGG | + | chr3.1:72824094-72824113 | MS.gene84140:CDS | 60.0% | |
| GCTTCAGAGGTCACCAACGG+AGG | + | chr3.1:72825453-72825472 | MS.gene84140:CDS | 60.0% | |
| GGCCTCAGCTAAGGCTGCTT+GGG | + | chr3.1:72826040-72826059 | MS.gene84140:intron | 60.0% | |
| TCAGCTAAGGCTGCTTGGGG+TGG | + | chr3.1:72826044-72826063 | MS.gene84140:intron | 60.0% | |
| TCAGCTGCTCGGACTCCACT+AGG | + | chr3.1:72822935-72822954 | MS.gene84140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 72822911 | 72826509 | 72822911 | ID=MS.gene84140 |
| chr3.1 | mRNA | 72822911 | 72826509 | 72822911 | ID=MS.gene84140.t1;Parent=MS.gene84140 |
| chr3.1 | exon | 72822911 | 72823609 | 72822911 | ID=MS.gene84140.t1.exon1;Parent=MS.gene84140.t1 |
| chr3.1 | CDS | 72822911 | 72823609 | 72822911 | ID=cds.MS.gene84140.t1;Parent=MS.gene84140.t1 |
| chr3.1 | exon | 72824059 | 72824205 | 72824059 | ID=MS.gene84140.t1.exon2;Parent=MS.gene84140.t1 |
| chr3.1 | CDS | 72824059 | 72824205 | 72824059 | ID=cds.MS.gene84140.t1;Parent=MS.gene84140.t1 |
| chr3.1 | exon | 72824669 | 72824905 | 72824669 | ID=MS.gene84140.t1.exon3;Parent=MS.gene84140.t1 |
| chr3.1 | CDS | 72824669 | 72824905 | 72824669 | ID=cds.MS.gene84140.t1;Parent=MS.gene84140.t1 |
| chr3.1 | exon | 72825409 | 72825672 | 72825409 | ID=MS.gene84140.t1.exon4;Parent=MS.gene84140.t1 |
| chr3.1 | CDS | 72825409 | 72825672 | 72825409 | ID=cds.MS.gene84140.t1;Parent=MS.gene84140.t1 |
| chr3.1 | exon | 72826312 | 72826509 | 72826312 | ID=MS.gene84140.t1.exon5;Parent=MS.gene84140.t1 |
| chr3.1 | CDS | 72826312 | 72826509 | 72826312 | ID=cds.MS.gene84140.t1;Parent=MS.gene84140.t1 |
| Gene Sequence |
| Protein sequence |
