Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31106.t1 | AMP17769.1 | 99.4 | 175 | 1 | 0 | 1 | 175 | 335 | 509 | 3.10E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31106.t1 | Q9SYD6 | 76.0 | 175 | 42 | 0 | 1 | 175 | 341 | 515 | 1.9e-68 | 260.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31106.t1 | G7IRZ8 | 99.4 | 175 | 1 | 0 | 1 | 175 | 333 | 507 | 2.2e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene31106 | 0.851802 | 7.00E-61 | -1.69E-46 |
| MS.gene049396 | MS.gene31106 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene049552 | MS.gene31106 | 0.802014 | 6.86E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene31106 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene049656 | MS.gene31106 | 0.841693 | 4.07E-58 | -1.69E-46 |
| MS.gene049657 | MS.gene31106 | 0.828469 | 8.84E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene31106 | 0.863095 | 3.18E-64 | -1.69E-46 |
| MS.gene050216 | MS.gene31106 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene31106 | 0.839434 | 1.59E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene31106 | 0.843159 | 1.66E-58 | -1.69E-46 |
| MS.gene050502 | MS.gene31106 | 0.825378 | 4.84E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene31106 | 0.817988 | 2.48E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene31106 | 0.807814 | 4.20E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene31106 | 0.809341 | 1.99E-50 | -1.69E-46 |
| MS.gene050697 | MS.gene31106 | 0.823995 | 1.03E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene31106 | 0.818744 | 1.67E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene31106 | 0.87017 | 1.79E-66 | -1.69E-46 |
| MS.gene050871 | MS.gene31106 | 0.871475 | 6.64E-67 | -1.69E-46 |
| MS.gene050904 | MS.gene31106 | 0.806589 | 7.64E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene31106 | 0.807724 | 4.40E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene31106 | 0.844654 | 6.61E-59 | -1.69E-46 |
| MS.gene051560 | MS.gene31106 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene052066 | MS.gene31106 | 0.89763 | 1.17E-76 | -1.69E-46 |
| MS.gene052164 | MS.gene31106 | 0.837864 | 4.04E-57 | -1.69E-46 |
| MS.gene052482 | MS.gene31106 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene31106 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene31106 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene052825 | MS.gene31106 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene31106 | 0.819327 | 1.23E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene31106 | 0.836237 | 1.05E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene31106 | 0.817762 | 2.79E-52 | -1.69E-46 |
| MS.gene053626 | MS.gene31106 | 0.862174 | 6.11E-64 | -1.69E-46 |
| MS.gene053633 | MS.gene31106 | 0.822036 | 2.94E-53 | -1.69E-46 |
| MS.gene054003 | MS.gene31106 | 0.835714 | 1.43E-56 | -1.69E-46 |
| MS.gene054595 | MS.gene31106 | 0.813474 | 2.51E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene31106 | 0.822282 | 2.58E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene31106 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene31106 | 0.809657 | 1.70E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene31106 | 0.842449 | 2.57E-58 | -1.69E-46 |
| MS.gene056040 | MS.gene31106 | 0.815796 | 7.70E-52 | -1.69E-46 |
| MS.gene056046 | MS.gene31106 | 0.809824 | 1.56E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene31106 | 0.822133 | 2.79E-53 | -1.69E-46 |
| MS.gene056310 | MS.gene31106 | -0.804493 | 2.10E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene31106 | 0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene31106 | 0.854042 | 1.60E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene31106 | 0.836611 | 8.46E-57 | -1.69E-46 |
| MS.gene056878 | MS.gene31106 | 0.871828 | 5.08E-67 | -1.69E-46 |
| MS.gene057086 | MS.gene31106 | 0.827718 | 1.34E-54 | -1.69E-46 |
| MS.gene057687 | MS.gene31106 | 0.84896 | 4.39E-60 | -1.69E-46 |
| MS.gene057734 | MS.gene31106 | 0.808684 | 2.74E-50 | -1.69E-46 |
| MS.gene057872 | MS.gene31106 | 0.83099 | 2.15E-55 | -1.69E-46 |
| MS.gene057876 | MS.gene31106 | 0.812114 | 4.99E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene31106 | 0.836138 | 1.12E-56 | -1.69E-46 |
| MS.gene058157 | MS.gene31106 | 0.827396 | 1.60E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene31106 | -0.827724 | 1.34E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene31106 | -0.828552 | 8.44E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene31106 | -0.8292 | 5.88E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene31106 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene31106 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene31106 | -0.838635 | 2.56E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene31106 | 0.830868 | 2.30E-55 | -1.69E-46 |
| MS.gene059517 | MS.gene31106 | 0.825753 | 3.95E-54 | -1.69E-46 |
| MS.gene059667 | MS.gene31106 | 0.80891 | 2.46E-50 | -1.69E-46 |
| MS.gene059837 | MS.gene31106 | 0.823886 | 1.09E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene31106 | 0.853269 | 2.67E-61 | -1.69E-46 |
| MS.gene05995 | MS.gene31106 | 0.821889 | 3.18E-53 | -1.69E-46 |
| MS.gene05996 | MS.gene31106 | 0.851309 | 9.66E-61 | -1.69E-46 |
| MS.gene06000 | MS.gene31106 | 0.838788 | 2.34E-57 | -1.69E-46 |
| MS.gene060187 | MS.gene31106 | -0.823929 | 1.06E-53 | -1.69E-46 |
| MS.gene060295 | MS.gene31106 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene31106 | 0.806462 | 8.13E-50 | -1.69E-46 |
| MS.gene060593 | MS.gene31106 | -0.820245 | 7.60E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene31106 | -0.863166 | 3.02E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene31106 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene31106 | 0.885949 | 5.23E-72 | -1.69E-46 |
| MS.gene06077 | MS.gene31106 | 0.813456 | 2.54E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene31106 | 0.834768 | 2.48E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene31106 | 0.84214 | 3.10E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31106.t1 | MTR_2g097900 | 99.429 | 175 | 1 | 0 | 1 | 175 | 333 | 507 | 1.38e-118 | 345 |
| MS.gene31106.t1 | MTR_3g029510 | 67.241 | 174 | 57 | 0 | 1 | 174 | 362 | 535 | 1.46e-78 | 243 |
| MS.gene31106.t1 | MTR_8g037175 | 61.714 | 175 | 67 | 0 | 1 | 175 | 353 | 527 | 1.86e-74 | 232 |
| MS.gene31106.t1 | MTR_8g037170 | 60.345 | 174 | 69 | 0 | 1 | 174 | 365 | 538 | 1.88e-70 | 222 |
| MS.gene31106.t1 | MTR_8g037170 | 60.345 | 174 | 69 | 0 | 1 | 174 | 378 | 551 | 3.18e-70 | 222 |
| MS.gene31106.t1 | MTR_8g036660 | 60.345 | 174 | 69 | 0 | 1 | 174 | 433 | 606 | 1.14e-69 | 222 |
| MS.gene31106.t1 | MTR_5g099020 | 46.286 | 175 | 94 | 0 | 1 | 175 | 376 | 550 | 5.69e-48 | 164 |
| MS.gene31106.t1 | MTR_5g099020 | 46.286 | 175 | 94 | 0 | 1 | 175 | 376 | 550 | 9.13e-48 | 163 |
| MS.gene31106.t1 | MTR_7g070210 | 44.444 | 81 | 45 | 0 | 1 | 81 | 386 | 466 | 1.88e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31106.t1 | AT1G51340 | 76.000 | 175 | 42 | 0 | 1 | 175 | 335 | 509 | 7.66e-90 | 271 |
| MS.gene31106.t1 | AT1G51340 | 76.000 | 175 | 42 | 0 | 1 | 175 | 341 | 515 | 1.44e-89 | 271 |
| MS.gene31106.t1 | AT1G51340 | 76.000 | 175 | 42 | 0 | 1 | 175 | 341 | 515 | 1.44e-89 | 271 |
| MS.gene31106.t1 | AT1G51340 | 76.000 | 175 | 42 | 0 | 1 | 175 | 341 | 515 | 1.44e-89 | 271 |
| MS.gene31106.t1 | AT3G08040 | 65.517 | 174 | 60 | 0 | 1 | 174 | 241 | 414 | 4.48e-78 | 239 |
| MS.gene31106.t1 | AT3G08040 | 65.517 | 174 | 60 | 0 | 1 | 174 | 345 | 518 | 6.29e-77 | 239 |
| MS.gene31106.t1 | AT4G38380 | 48.000 | 175 | 91 | 0 | 1 | 175 | 270 | 444 | 2.26e-49 | 165 |
| MS.gene31106.t1 | AT4G38380 | 48.000 | 175 | 91 | 0 | 1 | 175 | 308 | 482 | 3.82e-49 | 165 |
| MS.gene31106.t1 | AT4G38380 | 48.000 | 175 | 91 | 0 | 1 | 175 | 380 | 554 | 1.22e-48 | 165 |
| MS.gene31106.t1 | AT4G38380 | 48.000 | 175 | 91 | 0 | 1 | 175 | 380 | 554 | 1.22e-48 | 165 |
| MS.gene31106.t1 | AT4G38380 | 48.000 | 175 | 91 | 0 | 1 | 175 | 370 | 544 | 1.25e-48 | 165 |
| MS.gene31106.t1 | AT2G38330 | 44.571 | 175 | 97 | 0 | 1 | 175 | 341 | 515 | 1.40e-41 | 146 |
| MS.gene31106.t1 | AT1G51340 | 82.000 | 50 | 9 | 0 | 1 | 50 | 341 | 390 | 9.93e-20 | 85.5 |
Find 54 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAGATGGGCATGGTTCT+TGG | 0.278565 | 2.4:+6095976 | MS.gene31106:intron |
| TTCAAGTCTGTCTGCAAGTT+TGG | 0.279500 | 2.4:+6095636 | MS.gene31106:CDS |
| GCGGATGGTCTGGCTGTTGC+CGG | 0.285261 | 2.4:+6095677 | MS.gene31106:CDS |
| TATTTGATGGTGTCAACTTT+GGG | 0.292922 | 2.4:+6096237 | MS.gene31106:CDS |
| TGGTTTCAGGCGATTCTTGC+AGG | 0.293939 | 2.4:+6095775 | MS.gene31106:intron |
| TTGGCACTTGCATTCATTCT+TGG | 0.305585 | 2.4:+6096000 | MS.gene31106:CDS |
| TGTTTGGCCTTTGTATTTGA+TGG | 0.334770 | 2.4:+6096224 | MS.gene31106:CDS |
| ATACAAAGGCCAAACAGTTC+AGG | 0.350521 | 2.4:-6096217 | None:intergenic |
| AACTGCTACCCGAGTATTGC+AGG | 0.367216 | 2.4:+6095834 | MS.gene31106:CDS |
| CTTGCATTCATTCTTGGAAC+AGG | 0.384448 | 2.4:+6096006 | MS.gene31106:CDS |
| TTATGATGCAGGATTGGAAC+TGG | 0.389829 | 2.4:+6096883 | MS.gene31106:intron |
| GTCCCTTCTTGCGGATGGTC+TGG | 0.395512 | 2.4:+6095667 | MS.gene31106:CDS |
| TGGTCTGGCTGTTGCCGGGC+AGG | 0.402764 | 2.4:+6095682 | MS.gene31106:CDS |
| TCCTACACCTCATTAGAGTT+GGG | 0.408785 | 2.4:+6096070 | MS.gene31106:CDS |
| TCTTCATTCTCAGGTTATAG+TGG | 0.409610 | 2.4:+6096639 | MS.gene31106:intron |
| GTATTTGATGGTGTCAACTT+TGG | 0.411044 | 2.4:+6096236 | MS.gene31106:CDS |
| CACTCAACCCCTGAACTGTT+TGG | 0.424826 | 2.4:+6096208 | MS.gene31106:CDS |
| ATGAGTTTAAGAGCCTTTGC+TGG | 0.427946 | 2.4:+6096742 | MS.gene31106:CDS |
| CTTGGAACAGGATTGCACTT+TGG | 0.450496 | 2.4:+6096018 | MS.gene31106:CDS |
| TGCAGGATTGGAACTGGGTC+AGG | 0.452693 | 2.4:+6096889 | MS.gene31106:intron |
| CAGGACCATGGGAATTCCTT+AGG | 0.460543 | 2.4:+6096908 | MS.gene31106:CDS |
| TGCAGGTGCATTTGCTAACA+AGG | 0.477862 | 2.4:+6095792 | MS.gene31106:CDS |
| TACAAAGGCCAAACAGTTCA+GGG | 0.478905 | 2.4:-6096216 | None:intergenic |
| CGGATGGTCTGGCTGTTGCC+GGG | 0.479805 | 2.4:+6095678 | MS.gene31106:CDS |
| GATGGGCATGGTTCTTGGAT+TGG | 0.483353 | 2.4:+6095981 | MS.gene31106:intron |
| TGGAACTGGGTCAGGACCAT+GGG | 0.486703 | 2.4:+6096897 | MS.gene31106:CDS |
| GTCCTACACCTCATTAGAGT+TGG | 0.498396 | 2.4:+6096069 | MS.gene31106:CDS |
| TGCTAACAAGGACTATGAAA+AGG | 0.500938 | 2.4:+6095804 | MS.gene31106:CDS |
| GCAGTGTCCCTTCTTGCGGA+TGG | 0.503081 | 2.4:+6095662 | MS.gene31106:CDS |
| GCTAGCGCACTTAGCTCCTA+AGG | 0.510397 | 2.4:-6096924 | None:intergenic |
| AGTCTGTCTGCAAGTTTGGT+TGG | 0.514353 | 2.4:+6095640 | MS.gene31106:CDS |
| CCTCATTAGAGTTGGGGTCC+CGG | 0.519902 | 2.4:+6096077 | MS.gene31106:CDS |
| TGTAGAACACCTGCAATACT+CGG | 0.533112 | 2.4:-6095843 | None:intergenic |
| TTGGAACTGGGTCAGGACCA+TGG | 0.539529 | 2.4:+6096896 | MS.gene31106:CDS |
| CAGCCAGACCATCCGCAAGA+AGG | 0.542007 | 2.4:-6095670 | None:intergenic |
| GAGCCTTTGCTGGCTTCTTG+AGG | 0.546982 | 2.4:+6096752 | MS.gene31106:CDS |
| GTTGGCAGTGTCCCTTCTTG+CGG | 0.568099 | 2.4:+6095658 | MS.gene31106:CDS |
| TGCATATTCAGCCTTCTCCA+TGG | 0.574962 | 2.4:+6096271 | MS.gene31106:CDS |
| TAATATAATGCAGATGGGCA+TGG | 0.575585 | 2.4:+6095969 | MS.gene31106:intron |
| AGCCAGACCATCCGCAAGAA+GGG | 0.579779 | 2.4:-6095669 | None:intergenic |
| TGAATCATATCTCACCTGCC+CGG | 0.590246 | 2.4:-6095696 | None:intergenic |
| GAAGTTACATACCATGGAGA+AGG | 0.599442 | 2.4:-6096282 | None:intergenic |
| ACAGACTTGAAATGCAGCCA+TGG | 0.602463 | 2.4:-6095624 | None:intergenic |
| ATTTGATGGTGTCAACTTTG+GGG | 0.602557 | 2.4:+6096238 | MS.gene31106:CDS |
| CCGGGACCCCAACTCTAATG+AGG | 0.604305 | 2.4:-6096077 | None:intergenic |
| TACTCGGGTAGCAGTTGTTG+AGG | 0.609106 | 2.4:-6095827 | None:intergenic |
| GTAGAACACCTGCAATACTC+GGG | 0.620615 | 2.4:-6095842 | None:intergenic |
| CCCCAACTCTAATGAGGTGT+AGG | 0.629440 | 2.4:-6096071 | None:intergenic |
| TATGATGCAGGATTGGAACT+GGG | 0.631342 | 2.4:+6096884 | MS.gene31106:intron |
| TTACCTCAAGAAGCCAGCAA+AGG | 0.639714 | 2.4:-6096755 | None:intergenic |
| CCTACACCTCATTAGAGTTG+GGG | 0.644035 | 2.4:+6096071 | MS.gene31106:CDS |
| GTTGACACCATCAAATACAA+AGG | 0.646571 | 2.4:-6096231 | None:intergenic |
| TAGCTCCTAAGGAATTCCCA+TGG | 0.675106 | 2.4:-6096913 | None:intergenic |
| ACAAAGGCCAAACAGTTCAG+GGG | 0.700393 | 2.4:-6096215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAATATAATGCAGAT+GGG | + | chr2.4:6095964-6095983 | MS.gene31106:intron | 15.0% |
| !! | TAATTATAATATAATGCAGA+TGG | + | chr2.4:6095963-6095982 | MS.gene31106:intron | 15.0% |
| !! | AATTTATTCGTGTTCAAATT+TGG | + | chr2.4:6096101-6096120 | MS.gene31106:intron | 20.0% |
| !! | GTTTATAGTCCTTATTAAAA+AGG | - | chr2.4:6095891-6095910 | None:intergenic | 20.0% |
| ! | AATGAAAGTTCTACTCTTTA+GGG | - | chr2.4:6096157-6096176 | None:intergenic | 25.0% |
| ! | ATTAAAATATAGACTCTCCA+TGG | - | chr2.4:6096351-6096370 | None:intergenic | 25.0% |
| ! | TTTCAATGATTCTTCAAGAT+TGG | - | chr2.4:6096379-6096398 | None:intergenic | 25.0% |
| ! | TTTGAACACGAATAAATTAC+CGG | - | chr2.4:6096099-6096118 | None:intergenic | 25.0% |
| !!! | AAACCAAGATGATGTTTTTT+CGG | - | chr2.4:6095761-6095780 | None:intergenic | 25.0% |
| !!! | AGAATATGAAAGAAAGCATT+AGG | - | chr2.4:6096803-6096822 | None:intergenic | 25.0% |
| AAAAACATCATCTTGGTTTC+AGG | + | chr2.4:6095762-6095781 | MS.gene31106:intron | 30.0% | |
| AAAACATTGTAGCAAGAGTT+TGG | - | chr2.4:6096558-6096577 | None:intergenic | 30.0% | |
| ATTCGTGTTCAAATTTGGAA+AGG | + | chr2.4:6096106-6096125 | MS.gene31106:intron | 30.0% | |
| GAATGAAAGTTCTACTCTTT+AGG | - | chr2.4:6096158-6096177 | None:intergenic | 30.0% | |
| GATATGATTCATTACTCTCT+CGG | + | chr2.4:6095708-6095727 | MS.gene31106:intron | 30.0% | |
| GATCAAAGCAGATTAAAACA+TGG | - | chr2.4:6096310-6096329 | None:intergenic | 30.0% | |
| TCAATGAACTATTATGATGC+AGG | + | chr2.4:6096872-6096891 | MS.gene31106:intron | 30.0% | |
| TTGAACACGAATAAATTACC+GGG | - | chr2.4:6096098-6096117 | None:intergenic | 30.0% | |
| !! | TATTTGATGGTGTCAACTTT+GGG | + | chr2.4:6096237-6096256 | MS.gene31106:CDS | 30.0% |
| !!! | CATTATTTTAAGAAGATCGC+TGG | + | chr2.4:6095864-6095883 | MS.gene31106:intron | 30.0% |
| !!! | TACTTATTTTGTCATCTGCT+GGG | + | chr2.4:6096683-6096702 | MS.gene31106:CDS | 30.0% |
| ATGAAGTTAACGACGATTAG+TGG | + | chr2.4:6096597-6096616 | MS.gene31106:intron | 35.0% | |
| ATGGATGAAGTTACATACCA+TGG | - | chr2.4:6096291-6096310 | None:intergenic | 35.0% | |
| CTTCCGAAAAAACATCATCT+TGG | + | chr2.4:6095755-6095774 | MS.gene31106:intron | 35.0% | |
| GAACTATTATGATGCAGGAT+TGG | + | chr2.4:6096877-6096896 | MS.gene31106:intron | 35.0% | |
| GTTGACACCATCAAATACAA+AGG | - | chr2.4:6096234-6096253 | None:intergenic | 35.0% | |
| TAATATAATGCAGATGGGCA+TGG | + | chr2.4:6095969-6095988 | MS.gene31106:intron | 35.0% | |
| TCATGTCATTCTTCATTCTC+AGG | + | chr2.4:6096630-6096649 | MS.gene31106:intron | 35.0% | |
| TCTTCATTCTCAGGTTATAG+TGG | + | chr2.4:6096639-6096658 | MS.gene31106:intron | 35.0% | |
| TGCTAACAAGGACTATGAAA+AGG | + | chr2.4:6095804-6095823 | MS.gene31106:CDS | 35.0% | |
| TGTTTGTGTTAGCGCTTTAT+AGG | + | chr2.4:6096523-6096542 | MS.gene31106:intron | 35.0% | |
| ! | ATCGCTGGTCCTTTTTAATA+AGG | + | chr2.4:6095879-6095898 | MS.gene31106:intron | 35.0% |
| ! | TGTTTGGCCTTTGTATTTGA+TGG | + | chr2.4:6096224-6096243 | MS.gene31106:CDS | 35.0% |
| !! | ATTTGATGGTGTCAACTTTG+GGG | + | chr2.4:6096238-6096257 | MS.gene31106:CDS | 35.0% |
| !! | GTATTTGATGGTGTCAACTT+TGG | + | chr2.4:6096236-6096255 | MS.gene31106:CDS | 35.0% |
| !! | TTTATTTTCAGCCTTCTCCA+TGG | + | chr2.4:6096331-6096350 | MS.gene31106:intron | 35.0% |
| !!! | ACTTATTTTGTCATCTGCTG+GGG | + | chr2.4:6096684-6096703 | MS.gene31106:CDS | 35.0% |
| !!! | CTACTTATTTTGTCATCTGC+TGG | + | chr2.4:6096682-6096701 | MS.gene31106:CDS | 35.0% |
| ATACAAAGGCCAAACAGTTC+AGG | - | chr2.4:6096220-6096239 | None:intergenic | 40.0% | |
| ATATAGACTCTCCATGGAGA+AGG | - | chr2.4:6096345-6096364 | None:intergenic | 40.0% | |
| ATGAGTTTAAGAGCCTTTGC+TGG | + | chr2.4:6096742-6096761 | MS.gene31106:CDS | 40.0% | |
| CTTGCATTCATTCTTGGAAC+AGG | + | chr2.4:6096006-6096025 | MS.gene31106:CDS | 40.0% | |
| GAAGTTACATACCATGGAGA+AGG | - | chr2.4:6096285-6096304 | None:intergenic | 40.0% | |
| TACAAAGGCCAAACAGTTCA+GGG | - | chr2.4:6096219-6096238 | None:intergenic | 40.0% | |
| TATGATGCAGGATTGGAACT+GGG | + | chr2.4:6096884-6096903 | MS.gene31106:intron | 40.0% | |
| TCCAAATGTTGCAAGTGTCT+TGG | - | chr2.4:6096838-6096857 | None:intergenic | 40.0% | |
| TCCAAGACACTTGCAACATT+TGG | + | chr2.4:6096834-6096853 | MS.gene31106:intron | 40.0% | |
| TCCTACACCTCATTAGAGTT+GGG | + | chr2.4:6096070-6096089 | MS.gene31106:CDS | 40.0% | |
| TGGGGGATTCATTGGAATTT+GGG | + | chr2.4:6096702-6096721 | MS.gene31106:CDS | 40.0% | |
| TGTAGAACACCTGCAATACT+CGG | - | chr2.4:6095846-6095865 | None:intergenic | 40.0% | |
| TTATGATGCAGGATTGGAAC+TGG | + | chr2.4:6096883-6096902 | MS.gene31106:intron | 40.0% | |
| TTCAAGTCTGTCTGCAAGTT+TGG | + | chr2.4:6095636-6095655 | MS.gene31106:CDS | 40.0% | |
| TTGGCACTTGCATTCATTCT+TGG | + | chr2.4:6096000-6096019 | MS.gene31106:CDS | 40.0% | |
| !!! | CTTATTTTGTCATCTGCTGG+GGG | + | chr2.4:6096685-6096704 | MS.gene31106:CDS | 40.0% |
| ACAAAGGCCAAACAGTTCAG+GGG | - | chr2.4:6096218-6096237 | None:intergenic | 45.0% | |
| AGTCTGTCTGCAAGTTTGGT+TGG | + | chr2.4:6095640-6095659 | MS.gene31106:CDS | 45.0% | |
| CCTACACCTCATTAGAGTTG+GGG | + | chr2.4:6096071-6096090 | MS.gene31106:CDS | 45.0% | |
| CTGGGGGATTCATTGGAATT+TGG | + | chr2.4:6096701-6096720 | MS.gene31106:CDS | 45.0% | |
| CTTGGAACAGGATTGCACTT+TGG | + | chr2.4:6096018-6096037 | MS.gene31106:CDS | 45.0% | |
| GCTAACACAAACACAGACAC+TGG | - | chr2.4:6096516-6096535 | None:intergenic | 45.0% | |
| GTAGAACACCTGCAATACTC+GGG | - | chr2.4:6095845-6095864 | None:intergenic | 45.0% | |
| GTCCTACACCTCATTAGAGT+TGG | + | chr2.4:6096069-6096088 | MS.gene31106:CDS | 45.0% | |
| GTTGAGTGAGTGCTACAAAC+TGG | - | chr2.4:6096196-6096215 | None:intergenic | 45.0% | |
| TAGCTCCTAAGGAATTCCCA+TGG | - | chr2.4:6096916-6096935 | None:intergenic | 45.0% | |
| TGAATCATATCTCACCTGCC+CGG | - | chr2.4:6095699-6095718 | None:intergenic | 45.0% | |
| TGCATATTCAGCCTTCTCCA+TGG | + | chr2.4:6096271-6096290 | MS.gene31106:CDS | 45.0% | |
| TTACCTCAAGAAGCCAGCAA+AGG | - | chr2.4:6096758-6096777 | None:intergenic | 45.0% | |
| ! | TGCAGGTGCATTTGCTAACA+AGG | + | chr2.4:6095792-6095811 | MS.gene31106:CDS | 45.0% |
| ATGCAGATGGGCATGGTTCT+TGG | + | chr2.4:6095976-6095995 | MS.gene31106:intron | 50.0% | |
| CACTCAACCCCTGAACTGTT+TGG | + | chr2.4:6096208-6096227 | MS.gene31106:CDS | 50.0% | |
| CAGGACCATGGGAATTCCTT+AGG | + | chr2.4:6096908-6096927 | MS.gene31106:CDS | 50.0% | |
| CCCCAACTCTAATGAGGTGT+AGG | - | chr2.4:6096074-6096093 | None:intergenic | 50.0% | |
| GATGGGCATGGTTCTTGGAT+TGG | + | chr2.4:6095981-6096000 | MS.gene31106:intron | 50.0% | |
| TACTCGGGTAGCAGTTGTTG+AGG | - | chr2.4:6095830-6095849 | None:intergenic | 50.0% | |
| TCATCTGCTGGGGGATTCAT+TGG | + | chr2.4:6096694-6096713 | MS.gene31106:CDS | 50.0% | |
| TGGTTTCAGGCGATTCTTGC+AGG | + | chr2.4:6095775-6095794 | MS.gene31106:intron | 50.0% | |
| ! | AACTGCTACCCGAGTATTGC+AGG | + | chr2.4:6095834-6095853 | MS.gene31106:CDS | 50.0% |
| AGCCAGACCATCCGCAAGAA+GGG | - | chr2.4:6095672-6095691 | None:intergenic | 55.0% | |
| CCTCATTAGAGTTGGGGTCC+CGG | + | chr2.4:6096077-6096096 | MS.gene31106:CDS | 55.0% | |
| GTTGGCAGTGTCCCTTCTTG+CGG | + | chr2.4:6095658-6095677 | MS.gene31106:CDS | 55.0% | |
| TGCAGGATTGGAACTGGGTC+AGG | + | chr2.4:6096889-6096908 | MS.gene31106:intron | 55.0% | |
| TGGAACTGGGTCAGGACCAT+GGG | + | chr2.4:6096897-6096916 | MS.gene31106:CDS | 55.0% | |
| TTGGAACTGGGTCAGGACCA+TGG | + | chr2.4:6096896-6096915 | MS.gene31106:CDS | 55.0% | |
| !! | GAGCCTTTGCTGGCTTCTTG+AGG | + | chr2.4:6096752-6096771 | MS.gene31106:CDS | 55.0% |
| CAGCCAGACCATCCGCAAGA+AGG | - | chr2.4:6095673-6095692 | None:intergenic | 60.0% | |
| CCGGGACCCCAACTCTAATG+AGG | - | chr2.4:6096080-6096099 | None:intergenic | 60.0% | |
| GCAGTGTCCCTTCTTGCGGA+TGG | + | chr2.4:6095662-6095681 | MS.gene31106:CDS | 60.0% | |
| GTCCCTTCTTGCGGATGGTC+TGG | + | chr2.4:6095667-6095686 | MS.gene31106:CDS | 60.0% | |
| CGGATGGTCTGGCTGTTGCC+GGG | + | chr2.4:6095678-6095697 | MS.gene31106:CDS | 65.0% | |
| GCGGATGGTCTGGCTGTTGC+CGG | + | chr2.4:6095677-6095696 | MS.gene31106:CDS | 65.0% | |
| TGGTCTGGCTGTTGCCGGGC+AGG | + | chr2.4:6095682-6095701 | MS.gene31106:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6095626 | 6096936 | 6095626 | ID=MS.gene31106 |
| chr2.4 | mRNA | 6095626 | 6096936 | 6095626 | ID=MS.gene31106.t1;Parent=MS.gene31106 |
| chr2.4 | exon | 6095626 | 6095703 | 6095626 | ID=MS.gene31106.t1.exon1;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6095626 | 6095703 | 6095626 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| chr2.4 | exon | 6095784 | 6095855 | 6095784 | ID=MS.gene31106.t1.exon2;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6095784 | 6095855 | 6095784 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| chr2.4 | exon | 6095982 | 6096098 | 6095982 | ID=MS.gene31106.t1.exon3;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6095982 | 6096098 | 6095982 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| chr2.4 | exon | 6096197 | 6096292 | 6096197 | ID=MS.gene31106.t1.exon4;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6096197 | 6096292 | 6096197 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| chr2.4 | exon | 6096652 | 6096773 | 6096652 | ID=MS.gene31106.t1.exon5;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6096652 | 6096773 | 6096652 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| chr2.4 | exon | 6096894 | 6096936 | 6096894 | ID=MS.gene31106.t1.exon6;Parent=MS.gene31106.t1 |
| chr2.4 | CDS | 6096894 | 6096936 | 6096894 | ID=cds.MS.gene31106.t1;Parent=MS.gene31106.t1 |
| Gene Sequence |
| Protein sequence |
