AlfalfaGEDB | MS.gene70359

M. sativa cultivar XinJiangDaYe / MS.gene70359

KEGG: K01858
GO: GO:0003674 GO:0003824 GO:0004512 GO:0005975 GO:0006020 GO:0006021 GO:0006066 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016051 GO:0016853 GO:0016872 GO:0019637 GO:0019751 GO:0034637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044262 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617
PFAM: PF01658.20 PF07994.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70359.t1	XP_003630058.1	98.6	510	7	0	1	510	1	510	9.70E-290	1005.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70359.t1	Q9LW96	90.4	510	49	0	1	510	1	510	3.0e-271	935.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70359.t1	G7LAD5	98.6	510	7	0	1	510	1	510	7.0e-290	1005.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene70359	0.804171	2.46E-49	-1.69E-46
MS.gene049232	MS.gene70359	0.862999	3.40E-64	-1.69E-46
MS.gene049320	MS.gene70359	0.805053	1.61E-49	-1.69E-46
MS.gene049396	MS.gene70359	0.823225	1.55E-53	-1.69E-46
MS.gene049609	MS.gene70359	0.80158	8.42E-49	-1.69E-46
MS.gene049633	MS.gene70359	0.839286	1.74E-57	-1.69E-46
MS.gene049865	MS.gene70359	0.827995	1.15E-54	-1.69E-46
MS.gene05010	MS.gene70359	0.830678	2.56E-55	-1.69E-46
MS.gene050170	MS.gene70359	0.849793	2.57E-60	-1.69E-46
MS.gene050216	MS.gene70359	0.834755	2.49E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene70359.t1	MTR_8g091320	98.627	510	7	0	1	510	1	510	1042
MS.gene70359.t1	MTR_3g087590	92.157	510	40	0	1	510	1	510	987
MS.gene70359.t1	MTR_3g087590	90.456	461	43	1	1	461	1	460	869
MS.gene70359.t1	MTR_3g087590	92.000	425	34	0	86	510	4	428	824

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene70359.t1	AT5G10170	88.431	510	59	0	1	510	1	510	949
MS.gene70359.t1	AT2G22240	87.255	510	65	0	1	510	1	510	944
MS.gene70359.t1	AT4G39800	86.497	511	68	1	1	510	1	511	928
MS.gene70359.t1	AT2G22240	86.667	450	60	0	1	450	1	450	827
MS.gene70359.t1	AT2G22240	87.632	380	47	0	131	510	1	380	707

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Find 136 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACTAAGGCCCTACA+TGG	0.532603	4.2:-10570638	MS.gene70359:CDS
AAAAGGAACAGTTTGATTGG+TGG	0.536317	4.2:-10569973	MS.gene70359:CDS
AAACACTCTAGCTCTGCCCA+TGG	0.664245	4.2:+10570675	None:intergenic
AAACAGATGTCCCTAAATTG+GGG	0.663057	4.2:-10572115	MS.gene70359:intron
AAACCCTGAGGATATTGTGT+GGG	0.596934	4.2:-10570734	MS.gene70359:CDS
AAACTCATATTTGACTGTTT+TGG	0.228775	4.2:+10572145	None:intergenic
AAATCAGGGTCATAGATACC+AGG	0.611731	4.2:+10570598	None:intergenic
AAATTATTACAGGTTCCACC+AGG	0.620232	4.2:-10569028	MS.gene70359:intron
AACAATGGTTCAACCCTCAC+TGG	0.512708	4.2:-10571959	MS.gene70359:CDS
AACACAAGCCAAAGCATAGA+GGG	0.570612	4.2:+10570247	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTGAGTTACAACCATT+TGG	-	chr4.2:10571494-10571513	MS.gene70359:intron	30.0%
ACAGAAATAACACTTATGAG+TGG	-	chr4.2:10569022-10569041	MS.gene70359:intron	30.0%
ACATTATAGTACCCCAATTT+AGG	+	chr4.2:10569099-10569118	None:intergenic	30.0%
AGTTAGCGAACCAAAATAAT+TGG	+	chr4.2:10569945-10569964	None:intergenic	30.0%
ATAGTGAGTTACAACCATTT+GGG	-	chr4.2:10571495-10571514	MS.gene70359:intron	30.0%
ATCAAAAGGAACAGTTTGAT+TGG	-	chr4.2:10571224-10571243	MS.gene70359:CDS	30.0%
CATTATAGTACCCCAATTTA+GGG	+	chr4.2:10569098-10569117	None:intergenic	30.0%
CTGTAAATAAAAACAGCAAC+AGG	+	chr4.2:10572004-10572023	None:intergenic	30.0%
GAAAATGTTCCTTTCATCAA+TGG	-	chr4.2:10570979-10570998	MS.gene70359:intron	30.0%
GAGGTATAGTAATATTGTTG+TGG	-	chr4.2:10570861-10570880	MS.gene70359:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	10568919	10572303	10568919	ID=MS.gene70359
chr4.2	mRNA	10568919	10572303	10568919	ID=MS.gene70359.t1;Parent=MS.gene70359
chr4.2	exon	10572116	10572303	10572116	ID=MS.gene70359.t1.exon1;Parent=MS.gene70359.t1
chr4.2	CDS	10572116	10572303	10572116	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10571938	10572006	10571938	ID=MS.gene70359.t1.exon2;Parent=MS.gene70359.t1
chr4.2	CDS	10571938	10572006	10571938	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10571183	10571318	10571183	ID=MS.gene70359.t1.exon3;Parent=MS.gene70359.t1
chr4.2	CDS	10571183	10571318	10571183	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10570511	10570758	10570511	ID=MS.gene70359.t1.exon4;Parent=MS.gene70359.t1
chr4.2	CDS	10570511	10570758	10570511	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10570195	10570421	10570195	ID=MS.gene70359.t1.exon5;Parent=MS.gene70359.t1
chr4.2	CDS	10570195	10570421	10570195	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10569900	10570015	10569900	ID=MS.gene70359.t1.exon6;Parent=MS.gene70359.t1
chr4.2	CDS	10569900	10570015	10569900	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10569560	10569736	10569560	ID=MS.gene70359.t1.exon7;Parent=MS.gene70359.t1
chr4.2	CDS	10569560	10569736	10569560	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10569285	10569473	10569285	ID=MS.gene70359.t1.exon8;Parent=MS.gene70359.t1
chr4.2	CDS	10569285	10569473	10569285	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10569136	10569198	10569136	ID=MS.gene70359.t1.exon9;Parent=MS.gene70359.t1
chr4.2	CDS	10569136	10569198	10569136	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1
chr4.2	exon	10568919	10569038	10568919	ID=MS.gene70359.t1.exon10;Parent=MS.gene70359.t1
chr4.2	CDS	10568919	10569038	10568919	ID=cds.MS.gene70359.t1;Parent=MS.gene70359.t1

Gene Sequence

>MS.gene70359

ATGTTTATCGAGAATTTCAAGGTCGAAAGTCCTAACGTGAAGTACACAGAGACTGAGATTCGGTCCGTGTACAGTTACGAAACAACCGAACTTGTTCATGAGAACAGAAATAACACTTATGAGTGGATTGTTAAGCCCAAAACAGTCAAATATGAGTTTAAAACACAAACAGATGTCCCTAAATTGGGGTACTATAATGTCCTTCTCCTCATTTTGAGTCTATATTCAAAGTATTTCTTAATTTTTGTTGTTGCTTATTTTGTTATTTATATGTGTTTTTTATCTTGATATTGTCAGGGTAATGCTTGTTGGGTGGGGTGGAAACAATGGTTCAACCCTCACTGGTGGTGTTATTGCAAACCGAGAGTTAGTTTCATCTTAATCACCATTATTTTTGTTATTTTATTCTTATTATTATTATTATCAATAATTTTTGTGGTTATTGTAAAAATGAAAGGAAACGTCTAAAAAAAAAAAGGAACTATTCTCACGTATAAAAACAAAATGATATTGCATTATTCATAAGTGTCTTTTTTATTTAATCAATAAATCATATCTCGTTTAATTTATTTAACTTAATGGTATAATTTATTGATTCAATAGTGAAGATTAAATTGTACATAATTTATAACTTGTGCACGATAAAGTTGTCAAAACCCAAAAATAATAATAATAATAATAATAATAAGGGTCATGTTAATTTGTGCGCTTAGGAGCCCTTAGGAAACATGTTAAACAACCAAAATAGAAATTTTTCCTTAAATTTTGTACATTCCATTAATTAAAGTAAAAAAGATTAAATTCAAATGCATTGATTACAATAAAATATTCTACTTTTAATTCATAAGGCACAAGTTACCATTTTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGACGAAATTATTTGATATAGCAATTTTGGGTTACTATATCTTTGTGACTTTAATTTCAGGGGTATATCTTGGGCAACAAAGGACAAGATTCAGCAAGCCAATTATTTTGGTTCGCTAACTCAAGCATCAGCTATCAGAGTGGGGTCTTTCCAAGGGGAGGAAATACATGCCCCATTCAAGAGCCTTCTTCCAATGGTATATGGTCCCTTTCTTTCATGAAAGTCATTTCATTTTTTCTACTCTTTTATTGTACTCCCTCCGTCCCATAATACTTGACACAGTTGACCATATTATGCATACCAATATATAATTTTGAGCTTAAATATCTTGAATAATAAATTAGAAAAAATTATGAAAATTTGATATTTTGAAAATACTCATTGAGACAAATCTAACGACATCTTATATGATATTATTTATCTATATTATTTATCTTTGTATATTAGTAGAAGCATCACGAGACACAACCCAACAAGTAAGATGTGGAACATTCTTTCTTAGTAAGAAAAATTAAAATAAATAATTATACATAGTATATAATTTTATTCTATAGATACATCTTTAAAAAAAATATTGCATTATTAGTGTATAATTAATGAGTAATTTCATTTTTTTGCAGGTAAACCCTGAGGATATTGTGTGGGGAGGATGGGATATCAGTAACTTGAACCTAGCTGATGCCATGGGCAGAGCTAGAGTGTTTGACATAGACCTACAAAAACAACTAAGGCCCTACATGGAATCCATGGTTCCACTTCCTGGTATCTATGACCCTGATTTCATTGCTGCTAATCAAGGAGATCGTGCTAACAACATCATTAAAGGAACAAAGAAAGAACAACTTCAACAAGTCATCAAAGACATTAAGTAAAAAAATCATCATTAAATATCAATTTAATTAATTGAGTACCCTATGATCATTTTATAACTTACATAATGTGTTTTATGCATTTAAGGGAGTTTAAGGAAACTACCAAGGTTGACAAGGTTGTTGTACTCTGGACTGCCAACACTGAGAGGTATAGTAATATTGTTGTGGGACTAAATGACACTACTGAAAATCTTTTGGCTTCTGTGGACAAGAATGAAGCTGAGATTTCACCTTCAACCCTCTATGCTTTGGCTTGTGTTCTTGAAAATGTTCCTTTCATCAATGGAAGCCCTCAAAACACCTTTGTCCCAGGTTATTTTCCAAATTGCCCTTTAATTAATTTTAATTTTAATTTTATGTATGTAAATTAAATTTCTTTTGACAATTTTTTGACCAATTAAAATATGTTGTGATTTGTTAGTTGTTACTAGTGACTAGTGAGTGTTGCAAATTTTTAAAAATTGAATTTTGCTTGTATGATGGTTCATTAGGGTTGATTGATCTTGCCATCAAAAGGAACAGTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACAAAAATGAAGTCTGTGTTGGTTGATTTCCTTGTGGGAGCTGGTATCAAAGTATGTTTGTTTTTTTATTGCTACTTTATCTAATTATTGAGTACTTTATTGTTTCTTTTTTGTATGATTGAAGTTAAATTAGTTAAAACATGTGTATTATTATGCTAGCACAAAAGAAGTACCTTGAATTGATATTTGATTTGTGATGGGTGATGAATAACAGCCAACATCAATAGTGAGTTACAACCATTTGGGAAACAATGATGGAATGAATCTTTCTGCACCACAAACCTTCCGCTCTAAGGAAATCTCCAAGAGTAACGTTGTTGATGATATGGTCAACAGCAATGCCATCCTCTATGGCTCTGGTGAACATCCAGACCATGTTGTTGTCATTAAGGTACCAACTTTTACTCTGTCTTTTATTTTTGTTGGTGTTATTTGAAATAATACTCTTTTGTTAATTAATTGGTTTTCAATTTGCAGTATGTGCCTTATGTGGGGGACAGTAAGAGAGCAATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAACACAATTGTGATGCACAACACATGTGAAGATTCACTTTTGGCTGCTCCAATTATATTGGACTTGGTCCTTCTTGCTGAACTTAGCACTAGAATCCAGTTCAAATCTGAACAAGAGGTCATCATTTATTATTGCTTAAACCATTTTGTTTATTCAATTATTAAAAAACTTTAAGCTAAACCTGTTGCTGTTTTTATTTACAGGACAAGTTTCATTCATTCCATGCTGTTGCAACCATCCTCAGTTACCTCTCTAAGGCTCCACTTGTAAGTCTAATGTAGCTGGTTAATTATATCTATTAATTTTCTATAAGGTTGATGTATAGTATAATAACTAATAACTAATTGTTACAAATTATTACAGGTTCCACCAGGTACACCAGTTGTGAATGCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATTATGAGAGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATACTTGAATACAAGTGA

Protein sequence

>MS.gene70359.t1

MFIENFKVESPNVKYTETEIRSVYSYETTELVHENRNNTYEWIVKPKTVKYEFKTQTDVPKLGVMLVGWGGNNGSTLTGGVIANREGISWATKDKIQQANYFGSLTQASAIRVGSFQGEEIHAPFKSLLPMVNPEDIVWGGWDISNLNLADAMGRARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGDRANNIIKGTKKEQLQQVIKDIKEFKETTKVDKVVVLWTANTERYSNIVVGLNDTTENLLASVDKNEAEISPSTLYALACVLENVPFINGSPQNTFVPGLIDLAIKRNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVNSNAILYGSGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQFKSEQEDKFHSFHAVATILSYLSKAPLVPPGTPVVNALSKQRAMLENIMRACVGLAPENNMILEYK