AlfalfaGEDB | MS.gene068509

M. sativa cultivar XinJiangDaYe / MS.gene068509

KEGG: K22588
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0008168 GO:0008171 GO:0016740 GO:0016741 GO:0046983
PFAM: PF00891.21 PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068509.t1	XP_003605744.1	99.7	369	1	0	1	369	1	369	3.30E-215	757.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068509.t1	Q6WUC2	50.4	353	166	5	22	368	5	354	3.6e-101	369.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068509.t1	G7JTH4	99.7	369	1	0	1	369	1	369	2.4e-215	757.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene068509	0.816366	5.74E-52	-1.69E-46
MS.gene049222	MS.gene068509	0.800073	1.71E-48	-1.69E-46
MS.gene049232	MS.gene068509	0.841297	5.18E-58	-1.69E-46
MS.gene049285	MS.gene068509	0.800522	1.39E-48	-1.69E-46
MS.gene049320	MS.gene068509	0.811909	5.53E-51	-1.69E-46
MS.gene049396	MS.gene068509	0.81127	7.61E-51	-1.69E-46
MS.gene049609	MS.gene068509	0.834226	3.39E-56	-1.69E-46
MS.gene049633	MS.gene068509	0.839798	1.28E-57	-1.69E-46
MS.gene049865	MS.gene068509	0.847093	1.44E-59	-1.69E-46
MS.gene05010	MS.gene068509	0.854204	1.44E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068509.t1	MTR_4g038440	99.729	369	1	0	1	369	1	369	0.0	768
MS.gene068509.t1	MTR_0079s0070	99.701	335	1	0	35	369	1	335	0.0	698
MS.gene068509.t1	MTR_0017s0100	86.450	369	50	0	1	369	1	369	0.0	679
MS.gene068509.t1	MTR_4g038440	100.000	270	0	0	1	270	1	270	0.0	559
MS.gene068509.t1	MTR_3g083620	39.412	340	195	6	31	366	27	359	4.06e-84	260
MS.gene068509.t1	MTR_5g074600	41.595	351	193	7	25	368	14	359	2.70e-83	258
MS.gene068509.t1	MTR_5g074680	38.968	349	203	6	25	367	15	359	4.86e-80	249
MS.gene068509.t1	MTR_5g074580	38.567	363	206	8	18	368	3	360	3.87e-75	237
MS.gene068509.t1	MTR_7g118300	40.805	348	184	11	15	349	18	356	1.37e-73	233
MS.gene068509.t1	MTR_7g118320	37.209	344	193	12	22	349	7	343	5.92e-71	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068509.t1	AT5G54160	38.318	321	185	7	42	355	34	348	2.04e-72	230
MS.gene068509.t1	AT4G35160	34.254	362	217	6	22	367	24	380	9.24e-66	213
MS.gene068509.t1	AT1G77520	36.240	367	211	10	17	365	17	378	1.82e-64	210
MS.gene068509.t1	AT1G51990	32.787	366	222	12	16	368	8	362	6.81e-57	189
MS.gene068509.t1	AT4G35150	30.056	356	197	7	22	367	10	323	1.56e-56	187
MS.gene068509.t1	AT1G33030	36.760	321	186	11	44	354	23	336	2.19e-55	185
MS.gene068509.t1	AT1G63140	34.903	361	212	10	11	355	15	368	6.02e-55	185
MS.gene068509.t1	AT1G63140	34.903	361	212	10	11	355	35	388	1.12e-54	185
MS.gene068509.t1	AT1G51990	32.514	366	223	12	16	368	8	362	1.37e-54	184
MS.gene068509.t1	AT1G77530	35.870	368	213	11	16	365	16	378	1.70e-54	184

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Find 87 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCACTGCTTTCTTT+AGG	0.298524	4.2:-57754190	MS.gene068509:CDS
AAACATGTCTCCTCCAACAT+GGG	0.498630	4.2:+57753896	None:intergenic
AAATACTTATTCAACGAGAC+AGG	0.536963	4.2:-57753492	MS.gene068509:CDS
AACAGGAAAGGTGATCATTG+TGG	0.615274	4.2:-57753628	MS.gene068509:CDS
AAGAAAGAACTGAAGAGAAC+TGG	0.424963	4.2:-57753515	MS.gene068509:CDS
AAGGCAATACCAGAGAAAAC+AGG	0.476074	4.2:-57753645	MS.gene068509:CDS
AAGTCTTTGGTTGATGTTGG+TGG	0.413586	4.2:-57754029	MS.gene068509:CDS
AAGTTAATAGCTTGAATGTG+AGG	0.610156	4.2:+57753966	None:intergenic
AATACCAGAGAAAACAGGAA+AGG	0.671132	4.2:-57753640	MS.gene068509:CDS
AATAGCATCAGCGCTAGGAA+CGG	0.623697	4.2:+57753869	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACTTATTCAACGAGAC+AGG	-	chr4.2:57758344-57758363	MS.gene068509:intron	30.0%
AAATTGACACTAATTCTCTC+TGG	-	chr4.2:57755552-57755571	MS.gene068509:intron	30.0%
AACTAATATCAAACCCATTG+TGG	+	chr4.2:57755676-57755695	None:intergenic	30.0%
AAGTTAATAGCTTGAATGTG+AGG	+	chr4.2:57757873-57757892	None:intergenic	30.0%
ACAAGACACAAAAATGACAT+TGG	-	chr4.2:57757542-57757561	MS.gene068509:intron	30.0%
ACTTATAATTAGTAAACCGG+CGG	-	chr4.2:57754319-57754338	MS.gene068509:CDS	30.0%
AGATAATGTCATATGGGTTT+GGG	+	chr4.2:57756034-57756053	None:intergenic	30.0%
ATAATAGGAATCTTTGACCT+AGG	+	chr4.2:57757107-57757126	None:intergenic	30.0%
ATTGATCATTCCATTTCATC+GGG	+	chr4.2:57756235-57756254	None:intergenic	30.0%
ATTTGCGAATCCAACATAAT+AGG	+	chr4.2:57757122-57757141	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	57753425	57758433	57753425	ID=MS.gene068509
chr4.2	mRNA	57753425	57758433	57753425	ID=MS.gene068509.t1;Parent=MS.gene068509
chr4.2	exon	57758389	57758433	57758389	ID=MS.gene068509.t1.exon1;Parent=MS.gene068509.t1
chr4.2	CDS	57758389	57758433	57758389	ID=cds.MS.gene068509.t1;Parent=MS.gene068509.t1
chr4.2	exon	57753860	57754624	57753860	ID=MS.gene068509.t1.exon2;Parent=MS.gene068509.t1
chr4.2	CDS	57753860	57754624	57753860	ID=cds.MS.gene068509.t1;Parent=MS.gene068509.t1
chr4.2	exon	57753425	57753724	57753425	ID=MS.gene068509.t1.exon3;Parent=MS.gene068509.t1
chr4.2	CDS	57753425	57753724	57753425	ID=cds.MS.gene068509.t1;Parent=MS.gene068509.t1

Gene Sequence

>MS.gene068509

ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGGTGCGTAGATATAGATACAGATATAGATCAACGCATGCACTATTATTATATGATTAACACATAAATAATTAATATTACTAGTTACTATAATATTAAGACTTGAAACTGAGTTTTGTGCATCTCTATTTGCCTACTTAGTCTTATTTAAATTTGAATAGACCATGACAACATGCAACGTTTTTTTTATGCATTCATTTTATTGAAGAAACCAGATACATTTCTAATTTTTTTACTGTGTTATTTAAGTGATGTTCCAGTCTGGCTTTTATGGCCACTGGACCAATACTAACCCTGCCTTCCCAGTTTGTATAATGTTCAGTTTGGATTGGACTAAGGAGTTTGGGAAACTCATCAGGAAATGGAATCTTTTTTTTCCAACTGTGGCTGTAATTAATTCATTGAGCTTATTTTTTTTTTTTTATTATGTAACATAGTAATTGCAAAATTTCTTTCATGCAAGGGTATAATAATTAGTGTTGAGATTGTGGTTTTTGTATTAACTAGAACTGTTCACATCTTTATGTAAACTACATATGTGTAAGGTCTACAATAAATCTTGATTGGTATGTTTTTTATATGCAAAATTGAATTATAAAATTGGACAACAGGTACATAATTAATCACAAATGGCTCCACTTATGTGGTTTGGAGACACACTAATGGATCATATGGACAGTACATCAAACATGTCTCGCATTTTTGAGTTTTTTGAATTGTGACACATTATGATTCAAGAAATTGTCAACTCTATGTATAAATGTCCATGAAAATTGCCTTTTTAACGTCTAAAACTTGCTAAAAACACATGTAAAATACTAAAATGTCATCAACTGTAGTTAACTACCGCTGACTTATAATTAGTAAACCGGCGGTAGTTAACTATCGCTGGACTTTTTAGTCTTTTTCATGTATTTCTAGGAAACATTCAATGTCAGAAAAGCAACAGTCAATGTCCATCCACACGTGATATGAAAAATGGATGAGTAAAGAATCATGACCACAATGTTTAACATTTTTTTGTGACAAAACCACTATGTCTAACAGATGAAAAACATAAAAAAGAGAATTTAGTTATTTTACTTAATGGACTAAAAATAATTTTAAACAAATTATGTTATCTTGCTAATATTTTTAATACATGTTTGTTTAATCAAGACAACACTTACCTCTGATCCATGTAGACAATTCTACTTAATGAGATACAACTTGATTTGATTGTTTTTTAATTAAGCCAACACTATCTTTAATTAAGATAAAACTTACCCTATTTTTTTCTTCTTTCTTTTTAATATATGTATTTTTAGAAGTTTCATTTTATTTTATTTTGAAAAAAAGAAGCTTTAATTTTTTATAAATTACTTTTTTTTTTCTTTCTTATAAGTGATTATTTGAAAAAGGTCATTAAATTTATTTTGAAAAAAAAAACTTAATAGGTCTTTAGTCTCTAAACTTTTACTTTTTACCCTTTTTTTTACTGAGGTTAAAGTTAAAATTTTACCATTGAGTTAGCACCACAATTGTCTAATGTGCACAAGTACAATACTCATGCACTATCGACAAGTGTCTTTTTCACGTTTAGATCAATAAGTCTCTCTTTCGACCAAAAAAAAAAAAAGATCAATAAGTCTCAACATATATAATTTGATTTAATGGTGCGACATGTTGATCGAAAGATAGAAACTAACTTGTACAACATATAATTAGCTAGTTTCATATATTAAATTCATAACATTTGTTTACATGTTTGTGCAGTACAAAGAATAATTAAATATTAATGTTCTTTTAAAAAAAATATATGATATAATATCTCTCTTCAAACTCTATAATCACATCCTACAAGATCCTCTAATTTTTTTATCAAATTTTAACTAAACTTTTAACTTCTAAAATCTTAATTACTATTTTGTATACGAAATCAATCATAACCCTCAAATTTTTGAGACAAAACGAAGTAGTTAACATAACAAGAAGTTGATAACAAGATCACATTTGCTAAACTTTGAAAAAAGAGAAACTTAATCCAAATTAGAAAAGTAAAAGTCTAACTAAACCTGATTTTTAAATAATGATGACTATATTTTCAAATTGACACTAATTCTCTCTGGATCATGCATCGTGAATTTTTCTGTTGTAAGATTTAATATTTTCCAAAATAGGTTCGTTTTTTCTCTTTCAAAATCAAAACTAAACATAATTTTGTCTACCACAATGGGTTTGATATTAGTTATACTATGGTATAATTTTATGGCAACAATGAAATATTATTTTGAATGAATCATAATTTGTTCCAGATTATTGTATATAATACTTGTCTCATTAGCATGTTTGATTAGCCGGTTATAATCTTCTTTTTCTTTTACAAAATCGTGGCGAAAATATCACATACTAAATATAGTAAATGCAGAATTGCATAATCAAGCATGTCAAATATTTCAACAACCTTTTATCATATGTATTTTATTTTTCCTCAAAAAAAAAAAAATCATATGTATTTTATTTATCTAGCTGAGGTTCGTGTTCATGGCTTACTGATGTTGTGCGTCGCAGGATGAGATAGTGCACCCAAACCCATATGACATTATCTAAATTATCATTATCATATTCTTATTAGATTTTAGGCTTAATTGAATTTTCATCATCTTATTTTCAACCACTCATCGATTTTATCTCCCTATTTTTAAATCCACCCGTTTTGGTCCCTCCCACTTATTTATAAACTAAAGAAAGATGATGCGACATATTTTGAATGACGTGACATACAACCCGATGAAATGGAATGATCAATATCGACGAACTTGCAAGAAAACTCTTTAAAAACTTCAAATTCAACTTTAGAAATTATTCATTTTTGTAATTTAATTAATGACATGTAAATAATTTATCAATTGGAGGATTCTGCATCATTAGATTCTATGTTATTTTTTATTAAAACATGTAAAATCACCATTGTTTAGTCTAAAAATTTGAGCAACGAACCAAAATTAGTGAATTTTAAAATAGAAAGATCAATTCCACGACGAGGTAAAAATAGGGGGATAAAAAATGTAGTTAACCTATATTTTATAATTATAGACCGTTTTTTTTATCATAAATTAATAATGAAAAAAGAAACCTTATAAAAAATGGGAAATATTGTTGATATAACACTTTATTTTCCACACTCTCTTAAAAAAAAAAAAAAATTCCACACTTACTATTTTATTGATGAAATTATTAGTAGACTCACTAAAAACTTTCTCTTTCTAACACTCTATCTAAATATCATTATCTTATTTGATAAAATTCATGAGTCCACCACTATATGTGGGACTCATAGTCATTTCCGAAATGACCCACAATAATGTGTTAGAAAGATAGTGTTCTAAGCATTCTTATCGTTTACATTTCACTTTGGAGACATCAAGAAAAGGACACAAATAACTATTTTATTTTTGAAGTTTCATTCCTATCTCAATTACATAAAAATAATGATTTCATGCATCAAACGCAACTGCATCTTCTCTCTATAAATTAAAAAGATGTAGCCTTTAATAGTTATTATTGCTCAATTTTGCAAACAAAGGGGAATAAACAGTGTCTGGCTAGAGTAGCAGATATAAAATACATAAACATTGATAATATCTTTAGGTGTTTGCCTAGGTCAAAGATTCCTATTATGTTGGATTCGCAAATACAAAATTAATTATAAAAATATAAGTAAATTTTAATATGGTTAGTTAATTTTTTAGTCCATCCTATTATTAATCAAGTTTTATATTGATCAGGGTGTGAGCAAGGAAGAAGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGGTTGGACTCAAAATACAATGACTTGTTCAACCAAGGTATGGTTTGCACCGCTAGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGACGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGTGGGGGTATCGGAGGATCTCTCTCCGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACCGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCCGTTCCTAGCGCTGATGCTATTTACATGAAGGTATAATGCTAAACATATATATTGTTTCTTTTCAAATTTATAGTGCATTTGGTTTATACACATGAATTTAATTATAATGGTGACACTCTTCGAAATATGTCTTTAAAATTGACCTTATCTTTGGGTGAATGGCAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA

Protein sequence

>MS.gene068509.t1

METVLSKHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTKNGTAFFRCHGHEQFEMTGLDSKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV