AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63480.t1 MTR_3g068030 98.169 437 7 1 1 437 1 436 0.0 887
MS.gene63480.t1 MTR_3g068030 98.109 423 7 1 15 437 1 422 0.0 859
MS.gene63480.t1 MTR_5g080450 89.269 438 44 3 1 437 1 436 0.0 812
MS.gene63480.t1 MTR_4g021210 82.877 438 73 2 1 437 1 437 0.0 754
MS.gene63480.t1 MTR_2g105480 45.721 409 198 13 25 420 17 414 8.07e-111 333
MS.gene63480.t1 MTR_2g105480 48.415 347 158 11 25 361 17 352 4.45e-99 300
MS.gene63480.t1 MTR_2g105480 49.660 294 127 11 25 308 17 299 2.25e-79 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63480.t1 AT2G39730 80.137 438 83 2 1 437 1 435 0.0 730
MS.gene63480.t1 AT2G39730 80.137 438 83 2 1 437 1 435 0.0 729
MS.gene63480.t1 AT2G39730 80.137 438 83 2 1 437 1 435 0.0 728
MS.gene63480.t1 AT1G73110 54.636 302 130 6 125 420 31 331 3.10e-114 338
MS.gene63480.t1 AT1G73110 54.636 302 130 6 125 420 128 428 1.19e-112 338

Find 118 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTGAGGAAGTGGGTTTC+TGG 0.222183 3.1:-56335059 MS.gene63480:CDS
CCAATTGGCAGACAAGTATT+TGG 0.242423 3.1:-56334895 MS.gene63480:CDS
TTCCACTCATTCTTGGTGTC+TGG 0.257958 3.1:-56336410 MS.gene63480:CDS
TGATAGGTTCCACTCATTCT+TGG 0.280102 3.1:-56336417 MS.gene63480:intron
TTCCTCTTGTGATGTCTTGT+TGG 0.298884 3.1:+56336820 None:intergenic
TCCACTCATTCTTGGTGTCT+GGG 0.349269 3.1:-56336409 MS.gene63480:CDS
TGCTAATCAAGATGCTATTA+AGG 0.353818 3.1:-56334853 MS.gene63480:CDS
AACTCACTTGATTCCCATCT+TGG 0.355485 3.1:+56336341 None:intergenic
CCAATACGGTCTTCTCTTGT+AGG 0.362260 3.1:+56335299 None:intergenic
GTGAAGCCTCTGACATTATC+AGG 0.368067 3.1:-56335586 MS.gene63480:CDS
GGAGTTGGTATTGAAACAAT+TGG 0.369327 3.1:-56335038 MS.gene63480:CDS
AATTTACATACCTTGATGTT+AGG 0.387632 3.1:+56336518 None:intergenic
ATCTTTGGCTGCTCAAACAC+TGG 0.394520 3.1:+56334984 None:intergenic
AAGATTGTTGACACCTTCCC+TGG 0.404593 3.1:-56335224 MS.gene63480:CDS
CTAGAAAAGCTATTGGAGTA+TGG 0.406206 3.1:-56334957 MS.gene63480:CDS
CGGAGACAGATGGAGGGGTT+TGG 0.414870 3.1:-56336862 MS.gene63480:CDS
GTACAACTTTGACAACACTA+TGG 0.415644 3.1:-56336612 MS.gene63480:CDS
GATGACACTAGAAAAGCTAT+TGG 0.417148 3.1:-56334964 MS.gene63480:CDS
ATTATTATTGCAGATTTCTT+CGG 0.420483 3.1:-56335110 MS.gene63480:intron
GAATGTTAAGAGAGTCCAAT+TGG 0.428026 3.1:-56334910 MS.gene63480:CDS
TACATACCTTGATGTTAGGC+AGG 0.430104 3.1:+56336522 None:intergenic
AGGCAGGGTCAAGAAATTCT+TGG 0.431721 3.1:+56336538 None:intergenic
AGGAAGTGGGTTTCTGGAGT+TGG 0.432162 3.1:-56335053 MS.gene63480:CDS
CCAAATACTTGTCTGCCAAT+TGG 0.435805 3.1:+56334895 None:intergenic
GTTTCTAATTCAGCTTTCTT+CGG 0.438269 3.1:-56336990 MS.gene63480:CDS
TGAGTGTGGCATTCACCATC+TGG 0.438378 3.1:+56335477 None:intergenic
CTCTCCAGCACTCATCATGA+TGG 0.446603 3.1:+56335661 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 3.1:+56336775 None:intergenic
AAGTGTTGAGAAATCGTTAC+CGG 0.452222 3.1:+56335370 None:intergenic
TCTTCCTTGTTGTACATACC+AGG 0.462463 3.1:+56335419 None:intergenic
AACTTTGACAACACTATGGA+TGG 0.466779 3.1:-56336608 MS.gene63480:CDS
CCAGGGAGTTGGACATTGGT+GGG 0.468336 3.1:+56335437 None:intergenic
GTCGTATGGAGAAATTCTAC+TGG 0.472185 3.1:-56335325 MS.gene63480:CDS
TGAGCTTGTCTTTGCCAAGA+TGG 0.475008 3.1:-56336355 MS.gene63480:CDS
ATCGTTACCGGTGACAATGA+TGG 0.477733 3.1:+56335382 None:intergenic
TCTTATGAGTACATTAGTAC+TGG 0.483378 3.1:-56336732 MS.gene63480:CDS
CTTGACCCTGCCTAACATCA+AGG 0.484633 3.1:-56336528 MS.gene63480:intron
TTCCAAGCACCACAAGATGC+TGG 0.484718 3.1:-56336777 MS.gene63480:CDS
GACCGTATTGGTGTCTGCAT+TGG 0.485554 3.1:-56335287 MS.gene63480:CDS
CAGATTTCTTCGGTGCATTG+AGG 0.486126 3.1:-56335100 MS.gene63480:CDS
CATCACAAGAGGAAAGGGTT+TGG 0.488621 3.1:-56336811 MS.gene63480:CDS
CGATGCAGGAGCAGGTCGTA+TGG 0.496017 3.1:-56335528 MS.gene63480:CDS
TTCATCAACGATCTCGATGC+AGG 0.496807 3.1:-56335542 MS.gene63480:CDS
TGATAATGTCAGAGGCTTCA+CGG 0.497210 3.1:+56335588 None:intergenic
AGATTTCTTCGGTGCATTGA+GGG 0.497710 3.1:-56335099 MS.gene63480:CDS
AACGATCTCGATGCAGGAGC+AGG 0.497933 3.1:-56335536 MS.gene63480:CDS
TTGGTCATCTGAAATATCAT+AGG 0.498519 3.1:+56336839 None:intergenic
AGCCCCATCATGATGAGTGC+TGG 0.499726 3.1:-56335665 MS.gene63480:CDS
CCACTCATTCTTGGTGTCTG+GGG 0.505552 3.1:-56336408 MS.gene63480:CDS
CTCATTCTTGGTGTCTGGGG+AGG 0.507648 3.1:-56336405 MS.gene63480:CDS
GAGCTTGAAAGTGGAAATGC+AGG 0.508166 3.1:-56335641 MS.gene63480:CDS
GAGCTTGTCTTTGCCAAGAT+GGG 0.509304 3.1:-56336354 MS.gene63480:CDS
TCGTTACCGGTGACAATGAT+GGG 0.516193 3.1:+56335383 None:intergenic
TCTCATCCGTGATGGTCGTA+TGG 0.520006 3.1:-56335339 MS.gene63480:CDS
TCCCTTCCTGATAATGTCAG+AGG 0.521414 3.1:+56335580 None:intergenic
TCTCCAGCACTCATCATGAT+GGG 0.521950 3.1:+56335662 None:intergenic
CAAGACATCACAAGAGGAAA+GGG 0.523453 3.1:-56336816 MS.gene63480:CDS
CCAAACACAAAAGTTTCCTC+AGG 0.524555 3.1:-56336936 MS.gene63480:CDS
TGGCAAAGACAAGCTCAGCT+TGG 0.525244 3.1:+56336361 None:intergenic
TATTTGGAAGGTGCTGCTCT+TGG 0.530394 3.1:-56334879 MS.gene63480:CDS
CTTGGTGTCTGGGGAGGCAA+AGG 0.532419 3.1:-56336399 MS.gene63480:CDS
TTGAATGGCTCAGTAGTAGC+TGG 0.536636 3.1:-56337020 MS.gene63480:CDS
AGATAGGTATACCGATGGAT+TGG 0.538047 3.1:+56335201 None:intergenic
ACCAGGGAGTTGGACATTGG+TGG 0.539763 3.1:+56335436 None:intergenic
GCTGCTTCAGTTTCAACTGT+AGG 0.540056 3.1:-56337927 MS.gene63480:CDS
ACGTTGCAGATGAGCTTGAA+TGG 0.542906 3.1:-56337035 MS.gene63480:intron
GGTATACCGATGGATTGGCC+AGG 0.543252 3.1:+56335206 None:intergenic
ACCTTCCCTGGCCAATCCAT+CGG 0.545441 3.1:-56335212 MS.gene63480:intron
ACCCCTCCATCTGTCTCCGT+CGG 0.548680 3.1:+56336866 None:intergenic
AGTTGAAACTGAAGCAGCCA+TGG 0.552311 3.1:+56337932 None:intergenic
GTCTGGGGAGGCAAAGGACA+AGG 0.556245 3.1:-56336393 MS.gene63480:CDS
TGTTGTACATACCAGGGAGT+TGG 0.556562 3.1:+56335426 None:intergenic
CTTCCTTGTTGTACATACCA+GGG 0.559055 3.1:+56335420 None:intergenic
AAAGCTGAATTAGAAACTGT+TGG 0.560874 3.1:+56336996 None:intergenic
ACCGATGGATTGGCCAGGGA+AGG 0.562925 3.1:+56335211 None:intergenic
TTCCAATGCAGACACCAATA+CGG 0.566231 3.1:+56335285 None:intergenic
ACGATGATGAAGTGAGGAAG+TGG 0.566849 3.1:-56335067 MS.gene63480:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.567155 3.1:+56336572 None:intergenic
CCCACCAATGTCCAACTCCC+TGG 0.567626 3.1:-56335437 MS.gene63480:CDS
CCTACAAGAGAAGACCGTAT+TGG 0.567721 3.1:-56335299 MS.gene63480:CDS
ACAAGACATCACAAGAGGAA+AGG 0.569311 3.1:-56336817 MS.gene63480:CDS
GCCTCTGACATTATCAGGAA+GGG 0.569618 3.1:-56335581 MS.gene63480:CDS
CATCTTTAGCGATATTGTCA+TGG 0.579614 3.1:+56335255 None:intergenic
GATGCAGGAGCAGGTCGTAT+GGG 0.579936 3.1:-56335527 MS.gene63480:CDS
ATCAGCAATGTTCATGAGTG+TGG 0.586551 3.1:+56335463 None:intergenic
TTGGCAGACAAGTATTTGGA+AGG 0.590350 3.1:-56334891 MS.gene63480:CDS
CATACCAGGGAGTTGGACAT+TGG 0.598285 3.1:+56335433 None:intergenic
GACCAACAAGACATCACAAG+AGG 0.598306 3.1:-56336822 MS.gene63480:CDS
GCAGGAGCAGGTCGTATGGG+TGG 0.598399 3.1:-56335524 MS.gene63480:CDS
AGCCTCTGACATTATCAGGA+AGG 0.599821 3.1:-56335582 MS.gene63480:CDS
TATGCTCCTCTCATCCGTGA+TGG 0.599927 3.1:-56335347 MS.gene63480:CDS
AGTGCTGGAGAGCTTGAAAG+TGG 0.600135 3.1:-56335650 MS.gene63480:CDS
AACAGACCGACGGAGACAGA+TGG 0.601295 3.1:-56336872 MS.gene63480:CDS
AATCAAGATGCTATTAAGGA+GGG 0.604002 3.1:-56334849 MS.gene63480:CDS
GACCGACGGAGACAGATGGA+GGG 0.605937 3.1:-56336868 MS.gene63480:CDS
TTTGGCTGCTCAAACACTGG+TGG 0.609469 3.1:+56334987 None:intergenic
CTCCAGCACTCATCATGATG+GGG 0.610568 3.1:+56335663 None:intergenic
TAATCAAGATGCTATTAAGG+AGG 0.611873 3.1:-56334850 MS.gene63480:CDS
ACCGACGGAGACAGATGGAG+GGG 0.612461 3.1:-56336867 MS.gene63480:CDS
CCCCAGACACCAAGAATGAG+TGG 0.612578 3.1:+56336408 None:intergenic
AAAGAAGCTTGTGAACTCAA+AGG 0.613555 3.1:-56335015 MS.gene63480:CDS
CGATGATGAAGTGAGGAAGT+GGG 0.616122 3.1:-56335066 MS.gene63480:CDS
AGACCGACGGAGACAGATGG+AGG 0.622548 3.1:-56336869 MS.gene63480:CDS
CGTGTGCCCATCATTGTCAC+CGG 0.623900 3.1:-56335389 MS.gene63480:CDS
AAGCTTGTGAACTCAAAGGA+AGG 0.624377 3.1:-56335011 MS.gene63480:CDS
GTATACCGATGGATTGGCCA+GGG 0.625385 3.1:+56335207 None:intergenic
ACATACCTTGATGTTAGGCA+GGG 0.626022 3.1:+56336523 None:intergenic
TAATGAGTTCCAGCATCTTG+TGG 0.630506 3.1:+56336768 None:intergenic
CAGGGAGTTGGACATTGGTG+GGG 0.635431 3.1:+56335438 None:intergenic
GAGTGTACGATGATGAAGTG+AGG 0.639625 3.1:-56335073 MS.gene63480:CDS
ATACGACCATCACGGATGAG+AGG 0.646877 3.1:+56335341 None:intergenic
TCGTATGGAGAAATTCTACT+GGG 0.650848 3.1:-56335324 MS.gene63480:CDS
GTTGTTGACAGTGTATTGTG+TGG 0.660705 3.1:+56335499 None:intergenic
ATTTCTCCATACGACCATCA+CGG 0.663905 3.1:+56335333 None:intergenic
CTTTAGCGATATTGTCATGG+CGG 0.675976 3.1:+56335258 None:intergenic
ATACACTGTCAACAACCAGA+TGG 0.678952 3.1:-56335492 MS.gene63480:CDS
GATGACAGTAAACAGACCGA+CGG 0.702756 3.1:-56336882 MS.gene63480:CDS
ACTCCCTGGTATGTACAACA+AGG 0.721701 3.1:-56335423 MS.gene63480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATTTTTGTTTTGAT+AGG - chr3.1:56336336-56336355 MS.gene63480:intron 10.0%
!! CATAATTTCAACATTAAATT+AGG + chr3.1:56337080-56337099 None:intergenic 15.0%
!! TAAAGTTAAAAGTGATATAT+AGG - chr3.1:56335498-56335517 MS.gene63480:CDS 15.0%
!!! ACACATTTTATTAATATGTA+TGG - chr3.1:56336083-56336102 MS.gene63480:intron 15.0%
!! AAAATTTAAGTCACATGATT+TGG + chr3.1:56334979-56334998 None:intergenic 20.0%
!! ATAATAGCTCATAAATAAGA+CGG + chr3.1:56337644-56337663 None:intergenic 20.0%
!! ATTATTATTGCAGATTTCTT+CGG - chr3.1:56337659-56337678 MS.gene63480:intron 20.0%
!! CTTTACATGATTTCTATATA+CGG + chr3.1:56335483-56335502 None:intergenic 20.0%
!! TCTAATATGGTATCTATAAA+TGG + chr3.1:56335133-56335152 None:intergenic 20.0%
!! TTATAGATACCATATTAGAA+GGG - chr3.1:56335134-56335153 MS.gene63480:intron 20.0%
!! TTTATACATGAAATCTCATA+AGG + chr3.1:56336561-56336580 None:intergenic 20.0%
!! TTTATAGATACCATATTAGA+AGG - chr3.1:56335133-56335152 MS.gene63480:intron 20.0%
!!! TAAACTTTTTTATGCAAACA+TGG - chr3.1:56336972-56336991 MS.gene63480:CDS 20.0%
! AAATTGTCTCTACTATCAAT+GGG - chr3.1:56336578-56336597 MS.gene63480:CDS 25.0%
! AACAAATGAAAGTAACATAC+TGG + chr3.1:56334881-56334900 None:intergenic 25.0%
! AATATCGTGTAAAAATCTAG+TGG + chr3.1:56335609-56335628 None:intergenic 25.0%
! AATTAGCTGAATACAGTTTA+TGG - chr3.1:56336673-56336692 MS.gene63480:intron 25.0%
! AATTTACATACCTTGATGTT+AGG + chr3.1:56336254-56336273 None:intergenic 25.0%
! ACTTACGACTATAAACTATT+TGG - chr3.1:56336637-56336656 MS.gene63480:intron 25.0%
! ATAAGTTCTTTCAACCATTA+AGG - chr3.1:56336716-56336735 MS.gene63480:intron 25.0%
! ATAGATGAGTAAGTAAAAAG+AGG - chr3.1:56335657-56335676 MS.gene63480:CDS 25.0%
! ATTGAATATGTATCCCAATT+CGG + chr3.1:56336316-56336335 None:intergenic 25.0%
! CTTATTTAGTAATCACTTGT+TGG + chr3.1:56336537-56336556 None:intergenic 25.0%
! TAAATTGTCTCTACTATCAA+TGG - chr3.1:56336577-56336596 MS.gene63480:CDS 25.0%
! TAGATGAGTAAGTAAAAAGA+GGG - chr3.1:56335658-56335677 MS.gene63480:CDS 25.0%
! TATAGGAGTAATAGATTTCA+AGG - chr3.1:56335515-56335534 MS.gene63480:CDS 25.0%
! TGATACTTAGCTGATATATA+GGG - chr3.1:56335045-56335064 MS.gene63480:CDS 25.0%
AAAGCTGAATTAGAAACTGT+TGG + chr3.1:56335776-56335795 None:intergenic 30.0%
AACTAATCACCCTTCTAATA+TGG + chr3.1:56335146-56335165 None:intergenic 30.0%
AATCAAGATGCTATTAAGGA+GGG - chr3.1:56337920-56337939 MS.gene63480:CDS 30.0%
AATTGTCTCTACTATCAATG+GGG - chr3.1:56336579-56336598 MS.gene63480:CDS 30.0%
AGACAAATAGATAGATAGAC+AGG + chr3.1:56337595-56337614 None:intergenic 30.0%
AGATGAGTAAGTAAAAAGAG+GGG - chr3.1:56335659-56335678 MS.gene63480:CDS 30.0%
AGTAATAGATTTCAAGGAGT+TGG - chr3.1:56335521-56335540 MS.gene63480:CDS 30.0%
ATAAGCTCTCACAAATACTT+AGG + chr3.1:56335258-56335277 None:intergenic 30.0%
ATATCAGCTAAGTATCACAT+AGG + chr3.1:56335042-56335061 None:intergenic 30.0%
ATATTCAAGACCGTTTGAAT+CGG - chr3.1:56335210-56335229 MS.gene63480:intron 30.0%
GGTCTTGCTTTATGAAAATT+AGG + chr3.1:56336998-56337017 None:intergenic 30.0%
GTGATACTTAGCTGATATAT+AGG - chr3.1:56335044-56335063 MS.gene63480:CDS 30.0%
GTTTCTAATTCAGCTTTCTT+CGG - chr3.1:56335779-56335798 MS.gene63480:intron 30.0%
TAATCAAGATGCTATTAAGG+AGG - chr3.1:56337919-56337938 MS.gene63480:CDS 30.0%
TAATCGAAACATCTCCTTAA+TGG + chr3.1:56336733-56336752 None:intergenic 30.0%
TAGCGTATAAAAGCAGTTTA+TGG - chr3.1:56336865-56336884 MS.gene63480:CDS 30.0%
TATATAGTTCGCATTCACAT+AGG - chr3.1:56334929-56334948 MS.gene63480:CDS 30.0%
TCTTATGAGTACATTAGTAC+TGG - chr3.1:56336037-56336056 MS.gene63480:intron 30.0%
TGCTAATCAAGATGCTATTA+AGG - chr3.1:56337916-56337935 MS.gene63480:CDS 30.0%
TGTTGGATTTCAATGTTGTA+AGG + chr3.1:56336520-56336539 None:intergenic 30.0%
TTTCTATATACGGATCTGTT+TGG + chr3.1:56335473-56335492 None:intergenic 30.0%
! CTTAAATAAGCCGATTCAAA+CGG + chr3.1:56335223-56335242 None:intergenic 30.0%
! TGATCTAAAACTTGTGATGA+TGG - chr3.1:56336126-56336145 MS.gene63480:intron 30.0%
! TTGGTCATCTGAAATATCAT+AGG + chr3.1:56335933-56335952 None:intergenic 30.0%
AAAGAAGCTTGTGAACTCAA+AGG - chr3.1:56337754-56337773 MS.gene63480:intron 35.0%
AACTTTGACAACACTATGGA+TGG - chr3.1:56336161-56336180 MS.gene63480:intron 35.0%
AGATAGATAGACAGGTAGAT+AGG + chr3.1:56337587-56337606 None:intergenic 35.0%
ATACACTTGCGAGACTATTT+AGG - chr3.1:56336779-56336798 MS.gene63480:CDS 35.0%
CATCTTTAGCGATATTGTCA+TGG + chr3.1:56337517-56337536 None:intergenic 35.0%
CTAGAAAAGCTATTGGAGTA+TGG - chr3.1:56337812-56337831 MS.gene63480:intron 35.0%
GAATGTTAAGAGAGTCCAAT+TGG - chr3.1:56337859-56337878 MS.gene63480:intron 35.0%
GATGACACTAGAAAAGCTAT+TGG - chr3.1:56337805-56337824 MS.gene63480:intron 35.0%
GATGAGTAAGTAAAAAGAGG+GGG - chr3.1:56335660-56335679 MS.gene63480:CDS 35.0%
GTACAACTTTGACAACACTA+TGG - chr3.1:56336157-56336176 MS.gene63480:intron 35.0%
TCGTATGGAGAAATTCTACT+GGG - chr3.1:56337445-56337464 MS.gene63480:intron 35.0%
! TACAGAAAGCATGTTCTACA+TGG + chr3.1:56336473-56336492 None:intergenic 35.0%
! TTTTGTGTTTGGAAGTCTTG+CGG + chr3.1:56335825-56335844 None:intergenic 35.0%
!! AAAAACTTTGAAGCTTCCTG+AGG + chr3.1:56335852-56335871 None:intergenic 35.0%
!! AAGTGTTGAGAAATCGTTAC+CGG + chr3.1:56337402-56337421 None:intergenic 35.0%
!! ACTGCTTTTATACGCTATCT+TGG + chr3.1:56336862-56336881 None:intergenic 35.0%
!! AGCTTTTCTAGTGTCATCTT+TGG + chr3.1:56337803-56337822 None:intergenic 35.0%
!! AGTCGTAAGTTGATCTTCTT+TGG + chr3.1:56336627-56336646 None:intergenic 35.0%
!! GGAGTTGGTATTGAAACAAT+TGG - chr3.1:56337731-56337750 MS.gene63480:intron 35.0%
!! TTACATTGCTCCTGCTTTTA+TGG - chr3.1:56336187-56336206 MS.gene63480:intron 35.0%
!!! ACTTGTGATGATGGTGTTTT+AGG - chr3.1:56336135-56336154 MS.gene63480:intron 35.0%
AACTCACTTGATTCCCATCT+TGG + chr3.1:56336431-56336450 None:intergenic 40.0%
AAGCTTGTGAACTCAAAGGA+AGG - chr3.1:56337758-56337777 MS.gene63480:intron 40.0%
ACAAGACATCACAAGAGGAA+AGG - chr3.1:56335952-56335971 MS.gene63480:intron 40.0%
ACAAGCTTGTCCATAAAAGC+AGG + chr3.1:56336200-56336219 None:intergenic 40.0%
ACATACCTTGATGTTAGGCA+GGG + chr3.1:56336249-56336268 None:intergenic 40.0%
AGATAGGTATACCGATGGAT+TGG + chr3.1:56337571-56337590 None:intergenic 40.0%
ATACACTGTCAACAACCAGA+TGG - chr3.1:56337277-56337296 MS.gene63480:intron 40.0%
ATCAGCAATGTTCATGAGTG+TGG + chr3.1:56337309-56337328 None:intergenic 40.0%
ATTTCTCCATACGACCATCA+CGG + chr3.1:56337439-56337458 None:intergenic 40.0%
CAAGACATCACAAGAGGAAA+GGG - chr3.1:56335953-56335972 MS.gene63480:intron 40.0%
CCAAACACAAAAGTTTCCTC+AGG - chr3.1:56335833-56335852 MS.gene63480:intron 40.0%
CCAAATACTTGTCTGCCAAT+TGG + chr3.1:56337877-56337896 None:intergenic 40.0%
CCAATTGGCAGACAAGTATT+TGG - chr3.1:56337874-56337893 MS.gene63480:intron 40.0%
CTGTCTGTCTATCTGTTTGT+CGG - chr3.1:56337617-56337636 MS.gene63480:intron 40.0%
CTTTAGCGATATTGTCATGG+CGG + chr3.1:56337514-56337533 None:intergenic 40.0%
GCTATGACTTTAGCCGAATT+GGG - chr3.1:56336300-56336319 MS.gene63480:intron 40.0%
GTCGTATGGAGAAATTCTAC+TGG - chr3.1:56337444-56337463 MS.gene63480:intron 40.0%
GTTGTTGACAGTGTATTGTG+TGG + chr3.1:56337273-56337292 None:intergenic 40.0%
TAATGAGTTCCAGCATCTTG+TGG + chr3.1:56336004-56336023 None:intergenic 40.0%
TACATACCTTGATGTTAGGC+AGG + chr3.1:56336250-56336269 None:intergenic 40.0%
TGATAGGTTCCACTCATTCT+TGG - chr3.1:56336352-56336371 MS.gene63480:CDS 40.0%
TGCTATATACTGAGCATGCT+TGG + chr3.1:56337033-56337052 None:intergenic 40.0%
TGCTATGACTTTAGCCGAAT+TGG - chr3.1:56336299-56336318 MS.gene63480:intron 40.0%
TTCCAATGCAGACACCAATA+CGG + chr3.1:56337487-56337506 None:intergenic 40.0%
TTCCTCTTGTGATGTCTTGT+TGG + chr3.1:56335952-56335971 None:intergenic 40.0%
TTGGCAGACAAGTATTTGGA+AGG - chr3.1:56337878-56337897 MS.gene63480:intron 40.0%
! AGATTTCTTCGGTGCATTGA+GGG - chr3.1:56337670-56337689 MS.gene63480:intron 40.0%
! ATTTCAAGGAGTTGGTCTAG+TGG - chr3.1:56335529-56335548 MS.gene63480:CDS 40.0%
! CCTGAGGAAACTTTTGTGTT+TGG + chr3.1:56335836-56335855 None:intergenic 40.0%
! CTCTGTCTGATCAATTTTGC+TGG + chr3.1:56337158-56337177 None:intergenic 40.0%
! CTTCCTTGTTGTACATACCA+GGG + chr3.1:56337352-56337371 None:intergenic 40.0%
! TCTTCCTTGTTGTACATACC+AGG + chr3.1:56337353-56337372 None:intergenic 40.0%
! TGATAATGTCAGAGGCTTCA+CGG + chr3.1:56337184-56337203 None:intergenic 40.0%
AAGATTGTTGACACCTTCCC+TGG - chr3.1:56337545-56337564 MS.gene63480:intron 45.0%
ACGATGATGAAGTGAGGAAG+TGG - chr3.1:56337702-56337721 MS.gene63480:intron 45.0%
ACGTTGCAGATGAGCTTGAA+TGG - chr3.1:56335734-56335753 MS.gene63480:intron 45.0%
ACTCCCTGGTATGTACAACA+AGG - chr3.1:56337346-56337365 MS.gene63480:intron 45.0%
AGCCTCTGACATTATCAGGA+AGG - chr3.1:56337187-56337206 MS.gene63480:intron 45.0%
AGGCAGGGTCAAGAAATTCT+TGG + chr3.1:56336234-56336253 None:intergenic 45.0%
ATCGTTACCGGTGACAATGA+TGG + chr3.1:56337390-56337409 None:intergenic 45.0%
ATCTTTGGCTGCTCAAACAC+TGG + chr3.1:56337788-56337807 None:intergenic 45.0%
CAGGTAGATAGGTATACCGA+TGG + chr3.1:56337576-56337595 None:intergenic 45.0%
CATCACAAGAGGAAAGGGTT+TGG - chr3.1:56335958-56335977 MS.gene63480:intron 45.0%
CATGCTTGGAAGAGCTTCTT+TGG + chr3.1:56337019-56337038 None:intergenic 45.0%
CCAATACGGTCTTCTCTTGT+AGG + chr3.1:56337473-56337492 None:intergenic 45.0%
CCTACAAGAGAAGACCGTAT+TGG - chr3.1:56337470-56337489 MS.gene63480:intron 45.0%
CGATGATGAAGTGAGGAAGT+GGG - chr3.1:56337703-56337722 MS.gene63480:intron 45.0%
GACCAACAAGACATCACAAG+AGG - chr3.1:56335947-56335966 MS.gene63480:intron 45.0%
GAGCTTGAAAGTGGAAATGC+AGG - chr3.1:56337128-56337147 MS.gene63480:intron 45.0%
GAGCTTGTCTTTGCCAAGAT+GGG - chr3.1:56336415-56336434 MS.gene63480:intron 45.0%
GAGTAAGTAAAAAGAGGGGG+AGG - chr3.1:56335663-56335682 MS.gene63480:CDS 45.0%
GAGTGTACGATGATGAAGTG+AGG - chr3.1:56337696-56337715 MS.gene63480:intron 45.0%
GATGACAGTAAACAGACCGA+CGG - chr3.1:56335887-56335906 MS.gene63480:intron 45.0%
GCCTCTGACATTATCAGGAA+GGG - chr3.1:56337188-56337207 MS.gene63480:intron 45.0%
GCTGCTTCAGTTTCAACTGT+AGG - chr3.1:56334842-56334861 MS.gene63480:CDS 45.0%
GTGAAGCCTCTGACATTATC+AGG - chr3.1:56337183-56337202 MS.gene63480:intron 45.0%
TCGTTACCGGTGACAATGAT+GGG + chr3.1:56337389-56337408 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+GGG + chr3.1:56337110-56337129 None:intergenic 45.0%
TGAGCTTGTCTTTGCCAAGA+TGG - chr3.1:56336414-56336433 MS.gene63480:CDS 45.0%
TGTTGTACATACCAGGGAGT+TGG + chr3.1:56337346-56337365 None:intergenic 45.0%
TTCATCAACGATCTCGATGC+AGG - chr3.1:56337227-56337246 MS.gene63480:intron 45.0%
TTGAATGGCTCAGTAGTAGC+TGG - chr3.1:56335749-56335768 MS.gene63480:intron 45.0%
! CAGATTTCTTCGGTGCATTG+AGG - chr3.1:56337669-56337688 MS.gene63480:intron 45.0%
! CGCTATCTTGGAGTGCTTAT+CGG + chr3.1:56336850-56336869 None:intergenic 45.0%
! TCCCTTCCTGATAATGTCAG+AGG + chr3.1:56337192-56337211 None:intergenic 45.0%
!! TATTTGGAAGGTGCTGCTCT+TGG - chr3.1:56337890-56337909 MS.gene63480:intron 45.0%
!! TCCACTCATTCTTGGTGTCT+GGG - chr3.1:56336360-56336379 MS.gene63480:CDS 45.0%
!! TTCCACTCATTCTTGGTGTC+TGG - chr3.1:56336359-56336378 MS.gene63480:CDS 45.0%
ATACGACCATCACGGATGAG+AGG + chr3.1:56337431-56337450 None:intergenic 50.0%
CATACCAGGGAGTTGGACAT+TGG + chr3.1:56337339-56337358 None:intergenic 50.0%
CTCCAGCACTCATCATGATG+GGG + chr3.1:56337109-56337128 None:intergenic 50.0%
CTCTCCAGCACTCATCATGA+TGG + chr3.1:56337111-56337130 None:intergenic 50.0%
CTTGACCCTGCCTAACATCA+AGG - chr3.1:56336241-56336260 MS.gene63480:intron 50.0%
TATGCTCCTCTCATCCGTGA+TGG - chr3.1:56337422-56337441 MS.gene63480:intron 50.0%
TCTCATCCGTGATGGTCGTA+TGG - chr3.1:56337430-56337449 MS.gene63480:intron 50.0%
TGAGTGTGGCATTCACCATC+TGG + chr3.1:56337295-56337314 None:intergenic 50.0%
TGGCAAAGACAAGCTCAGCT+TGG + chr3.1:56336411-56336430 None:intergenic 50.0%
TTCCAAGCACCACAAGATGC+TGG - chr3.1:56335992-56336011 MS.gene63480:intron 50.0%
TTCCAGCATCTTGTGGTGCT+TGG + chr3.1:56335997-56336016 None:intergenic 50.0%
TTTGGCTGCTCAAACACTGG+TGG + chr3.1:56337785-56337804 None:intergenic 50.0%
! AGTGCTGGAGAGCTTGAAAG+TGG - chr3.1:56337119-56337138 MS.gene63480:intron 50.0%
! GAAGTGAGGAAGTGGGTTTC+TGG - chr3.1:56337710-56337729 MS.gene63480:intron 50.0%
! GACCGTATTGGTGTCTGCAT+TGG - chr3.1:56337482-56337501 MS.gene63480:intron 50.0%
!! AGGAAGTGGGTTTCTGGAGT+TGG - chr3.1:56337716-56337735 MS.gene63480:intron 50.0%
!! CCACTCATTCTTGGTGTCTG+GGG - chr3.1:56336361-56336380 MS.gene63480:CDS 50.0%
!! GTATACCGATGGATTGGCCA+GGG + chr3.1:56337565-56337584 None:intergenic 50.0%
AACAGACCGACGGAGACAGA+TGG - chr3.1:56335897-56335916 MS.gene63480:intron 55.0%
AACGATCTCGATGCAGGAGC+AGG - chr3.1:56337233-56337252 MS.gene63480:intron 55.0%
ACCAGGGAGTTGGACATTGG+TGG + chr3.1:56337336-56337355 None:intergenic 55.0%
ACCTTCCCTGGCCAATCCAT+CGG - chr3.1:56337557-56337576 MS.gene63480:intron 55.0%
AGCCCCATCATGATGAGTGC+TGG - chr3.1:56337104-56337123 MS.gene63480:intron 55.0%
CAGGGAGTTGGACATTGGTG+GGG + chr3.1:56337334-56337353 None:intergenic 55.0%
CCAGGGAGTTGGACATTGGT+GGG + chr3.1:56337335-56337354 None:intergenic 55.0%
CCCCAGACACCAAGAATGAG+TGG + chr3.1:56336364-56336383 None:intergenic 55.0%
CGTGTGCCCATCATTGTCAC+CGG - chr3.1:56337380-56337399 MS.gene63480:intron 55.0%
GATGCAGGAGCAGGTCGTAT+GGG - chr3.1:56337242-56337261 MS.gene63480:intron 55.0%
!! CTCATTCTTGGTGTCTGGGG+AGG - chr3.1:56336364-56336383 MS.gene63480:CDS 55.0%
!! GGTATACCGATGGATTGGCC+AGG + chr3.1:56337566-56337585 None:intergenic 55.0%
ACCCCTCCATCTGTCTCCGT+CGG + chr3.1:56335906-56335925 None:intergenic 60.0%
ACCGACGGAGACAGATGGAG+GGG - chr3.1:56335902-56335921 MS.gene63480:intron 60.0%
AGACCGACGGAGACAGATGG+AGG - chr3.1:56335900-56335919 MS.gene63480:intron 60.0%
CCCACCAATGTCCAACTCCC+TGG - chr3.1:56337332-56337351 MS.gene63480:intron 60.0%
CGATGCAGGAGCAGGTCGTA+TGG - chr3.1:56337241-56337260 MS.gene63480:intron 60.0%
CGGAGACAGATGGAGGGGTT+TGG - chr3.1:56335907-56335926 MS.gene63480:intron 60.0%
GACCGACGGAGACAGATGGA+GGG - chr3.1:56335901-56335920 MS.gene63480:intron 60.0%
GTCTGGGGAGGCAAAGGACA+AGG - chr3.1:56336376-56336395 MS.gene63480:CDS 60.0%
!! ACCGATGGATTGGCCAGGGA+AGG + chr3.1:56337561-56337580 None:intergenic 60.0%
!! CTTGGTGTCTGGGGAGGCAA+AGG - chr3.1:56336370-56336389 MS.gene63480:CDS 60.0%
GCAGGAGCAGGTCGTATGGG+TGG - chr3.1:56337245-56337264 MS.gene63480:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 56334839 56337952 56334839 ID=MS.gene63480
chr3.1 mRNA 56334839 56337952 56334839 ID=MS.gene63480.t1;Parent=MS.gene63480
chr3.1 exon 56337911 56337952 56337911 ID=MS.gene63480.t1.exon1;Parent=MS.gene63480.t1
chr3.1 CDS 56337911 56337952 56337911 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
chr3.1 exon 56336723 56337048 56336723 ID=MS.gene63480.t1.exon2;Parent=MS.gene63480.t1
chr3.1 CDS 56336723 56337048 56336723 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
chr3.1 exon 56336529 56336634 56336529 ID=MS.gene63480.t1.exon3;Parent=MS.gene63480.t1
chr3.1 CDS 56336529 56336634 56336529 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
chr3.1 exon 56336348 56336433 56336348 ID=MS.gene63480.t1.exon4;Parent=MS.gene63480.t1
chr3.1 CDS 56336348 56336433 56336348 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
chr3.1 exon 56335213 56335685 56335213 ID=MS.gene63480.t1.exon5;Parent=MS.gene63480.t1
chr3.1 CDS 56335213 56335685 56335213 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
chr3.1 exon 56334839 56335119 56334839 ID=MS.gene63480.t1.exon6;Parent=MS.gene63480.t1
chr3.1 CDS 56334839 56335119 56334839 ID=cds.MS.gene63480.t1;Parent=MS.gene63480.t1
Gene Sequence

>MS.gene63480

ATGGCTGCTTCAGTTTCAACTGTAGGAGCTGTCAAAACTCCAGTATGTTACTTTCATTTGTTTAATTAAATACTATATAGTATGCATGTTTATATAGTTCGCATTCACATAGGTGTGTTTGTCATTAATTAAATGCTCCAAATCATGTGACTTAAATTTTATTACTACTACTATATACTATACATTACTGCAGTTGTATACCTATGTGATACTTAGCTGATATATAGGGATACTTAATAGTTGATATACATGTTTATATAGCACATAATAATGTTTGTGTAATTTAAGAATCCATTTATAGATACCATATTAGAAGGGTGATTAGTTTATCTTACACTCATACTTTGATATAATTTGATGCATGATATAACATATTCAAGACCGTTTGAATCGGCTTATTTAAGCTTATTTAGTGACCTAAGTATTTGTGAGAGCTTATAGTAGTTTAAGACATATTCGTAGATGTTTTTCAGATTATTTTCATAAGCTTTACAAGAAAGCTTATGAAAACAGCTTATAAGTTGTATAAAAACAGTTTGAATTTAGTTTATTATTCTGATAATAAATAGTTTATACATAAACACTTGTATGATAATCACTTATGCTATAAATGCTCAATTAAACTGTTTATCCAAACAGATCCGTATATAGAAATCATGTAAAGTTAAAAGTGATATATAGGAGTAATAGATTTCAAGGAGTTGGTCTAGTGGATCACGACAAAACTTGTATCTTAAATTTTTGATTTGATACAAGTTCTATTTGATCCACTAGATTTTTACACGATATTTTTTTCGTTATCAAAAAAACAACTTAGAATAGATGAGTAAGTAAAAAGAGGGGGAGGTAATTGTAATTTGTAAGAATTGAACTCTTAATAATGTGAAATGTTGTGACGTTGCAGATGAGCTTGAATGGCTCAGTAGTAGCTGGACCAACAGTTTCTAATTCAGCTTTCTTCGGAACAAGCTTGAAGAAGCTTACCGCAAGACTTCCAAACACAAAAGTTTCCTCAGGAAGCTTCAAAGTTTTTGCTGCTAAAGAGATCGATGACAGTAAACAGACCGACGGAGACAGATGGAGGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACAAGAGGAAAGGGTTTGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAAACAGTGAGTGACTTGCTACACATTTTATTAATATGTATGGTTTGTAAATGAAGTTTCTTTTGATCTAAAACTTGTGATGATGGTGTTTTAGGTACAACTTTGACAACACTATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCCTGCCTAACATCAAGGTATGTAAATTTGACTCATGATTTCTCTATAAACTATGCTATGACTTTAGCCGAATTGGGATACATATTCAATATTTTAATTTTTGTTTTGATAGGTTCCACTCATTCTTGGTGTCTGGGGAGGCAAAGGACAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCCAAGATGGGAATCAAGTGAGTTCTTATTACACTAACGAATTCCATGTAGAACATGCTTTCTGTATAAATTATGATTTAAATTCTTAAACCTTACAACATTGAAATCCAACAAGTGATTACTAAATAAGACCTTATGAGATTTCATGTATAAATTGTCTCTACTATCAATGGGGACAAACTTCGCAAAAGCTAAGACCAAAGAAGATCAACTTACGACTATAAACTATTTGGAAGAACTTATGAAAATTAGCTGAATACAGTTTATGGACATATCATAAACTATTTCTATAAGTTCTTTCAACCATTAAGGAGATGTTTCGATTAATTTATTTGAGTTTATCTATTCACATATACACTTGCGAGACTATTTAGGAGAGCTTATGAAAATAAACGATGTCTATAAGTTGTTGTCTTTTTTCCGATAAGCACTCCAAGATAGCGTATAAAAGCAGTTTATGGCTTATTTGAATTTATTTTATCTTTTGTTATAGAAATAGCTTATACATAAGCACTTATAAGTTATACGATCAAAGAAGCTCTTAATAAACTTTTTTATGCAAACATGGCCTAATTTTCATAAAGCAAGACCAAAGAAGCTCTTCCAAGCATGCTCAGTATATAGCATATGTTATGTTACATAATCTTCTACCTAATTTAATGTTGAAATTATGTTACAGCCCCATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCCTCTGACATTATCAGGAAGGGAAAGATGTGTTGTCTGTTCATCAACGATCTCGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAATACACTGTCAACAACCAGATGGTGAATGCCACACTCATGAACATTGCTGATAACCCCACCAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAACGCACGTGTGCCCATCATTGTCACCGGTAACGATTTCTCAACACTTTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCTCCTACAAGAGAAGACCGTATTGGTGTCTGCATTGGAATTTTCCGCCATGACAATATCGCTAAAGATGACATTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATCGGTATACCTATCTACCTGTCTATCTATCTATTTGTCTATCTGTCTGTCTATCTGTTTGTCGGTCCGTCTTATTTATGAGCTATTATTATTGCAGATTTCTTCGGTGCATTGAGGGCTAGAGTGTACGATGATGAAGTGAGGAAGTGGGTTTCTGGAGTTGGTATTGAAACAATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCAGTGTTTGAGCAGCCAAAGATGACACTAGAAAAGCTATTGGAGTATGGTAACATGCTTGTCTCAGAACAAGAGAATGTTAAGAGAGTCCAATTGGCAGACAAGTATTTGGAAGGTGCTGCTCTTGGTGATGCTAATCAAGATGCTATTAAGGAGGGAAAATTCTAG

Protein sequence

>MS.gene63480.t1

MAASVSTVGAVKTPMSLNGSVVAGPTVSNSAFFGTSLKKLTARLPNTKVSSGSFKVFAAKEIDDSKQTDGDRWRGLAYDISDDQQDITRGKGLVDSVFQAPQDAGTHYAVMSSYEYISTGLKQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQENVKRVQLADKYLEGAALGDANQDAIKEGKF