Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84396.t1 | RHN74043.1 | 100 | 76 | 0 | 0 | 26 | 101 | 135 | 210 | 3.70E-34 | 154.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84396.t1 | Q7Z4H3 | 62.3 | 77 | 28 | 1 | 27 | 103 | 83 | 158 | 1.6e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84396.t1 | A0A396JCK9 | 100.0 | 76 | 0 | 0 | 26 | 101 | 135 | 210 | 2.7e-34 | 154.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene84396 | 0.825279 | 5.11E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene84396 | 0.833431 | 5.36E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene84396 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene049260 | MS.gene84396 | 0.80795 | 3.94E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene84396 | 0.826768 | 2.26E-54 | -1.69E-46 |
| MS.gene04933 | MS.gene84396 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene84396 | 0.863657 | 2.13E-64 | -1.69E-46 |
| MS.gene049382 | MS.gene84396 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene049599 | MS.gene84396 | -0.808109 | 3.64E-50 | -1.69E-46 |
| MS.gene049629 | MS.gene84396 | 0.80588 | 1.08E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene84396 | 0.893102 | 8.59E-75 | -1.69E-46 |
| MS.gene04984 | MS.gene84396 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene049910 | MS.gene84396 | 0.842793 | 2.08E-58 | -1.69E-46 |
| MS.gene049915 | MS.gene84396 | 0.831282 | 1.82E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene84396 | 0.866608 | 2.52E-65 | -1.69E-46 |
| MS.gene050227 | MS.gene84396 | 0.875938 | 2.08E-68 | -1.69E-46 |
| MS.gene050228 | MS.gene84396 | 0.871008 | 9.47E-67 | -1.69E-46 |
| MS.gene050301 | MS.gene84396 | 0.835579 | 1.55E-56 | -1.69E-46 |
| MS.gene050319 | MS.gene84396 | -0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene84396 | -0.844702 | 6.42E-59 | -1.69E-46 |
| MS.gene050438 | MS.gene84396 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene84396 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene050516 | MS.gene84396 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene84396 | 0.846169 | 2.57E-59 | -1.69E-46 |
| MS.gene050586 | MS.gene84396 | 0.819658 | 1.03E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene84396 | -0.863874 | 1.82E-64 | -1.69E-46 |
| MS.gene050642 | MS.gene84396 | 0.84304 | 1.79E-58 | -1.69E-46 |
| MS.gene050719 | MS.gene84396 | 0.847406 | 1.18E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene84396 | 0.84488 | 5.75E-59 | -1.69E-46 |
| MS.gene050724 | MS.gene84396 | 0.842198 | 2.99E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene84396 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene84396 | 0.837727 | 4.38E-57 | -1.69E-46 |
| MS.gene050763 | MS.gene84396 | 0.839248 | 1.78E-57 | -1.69E-46 |
| MS.gene050787 | MS.gene84396 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene84396 | 0.849101 | 4.01E-60 | -1.69E-46 |
| MS.gene050824 | MS.gene84396 | 0.848577 | 5.61E-60 | -1.69E-46 |
| MS.gene050953 | MS.gene84396 | 0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene84396 | -0.844064 | 9.53E-59 | -1.69E-46 |
| MS.gene051535 | MS.gene84396 | 0.800794 | 1.22E-48 | -1.69E-46 |
| MS.gene051662 | MS.gene84396 | 0.840517 | 8.29E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene84396 | 0.861669 | 8.72E-64 | -1.69E-46 |
| MS.gene051860 | MS.gene84396 | 0.866348 | 3.05E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene84396 | 0.842346 | 2.74E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene84396 | 0.810757 | 9.83E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene84396 | 0.829393 | 5.28E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene84396 | 0.81285 | 3.45E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene84396 | 0.829823 | 4.15E-55 | -1.69E-46 |
| MS.gene052309 | MS.gene84396 | -0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene84396 | 0.802405 | 5.70E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene84396 | 0.841027 | 6.09E-58 | -1.69E-46 |
| MS.gene052389 | MS.gene84396 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene84396 | 0.805262 | 1.45E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene84396 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene052856 | MS.gene84396 | 0.845351 | 4.29E-59 | -1.69E-46 |
| MS.gene052858 | MS.gene84396 | 0.841739 | 3.96E-58 | -1.69E-46 |
| MS.gene052860 | MS.gene84396 | 0.845203 | 4.70E-59 | -1.69E-46 |
| MS.gene052896 | MS.gene84396 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene84396 | 0.801922 | 7.16E-49 | -1.69E-46 |
| MS.gene053184 | MS.gene84396 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene053565 | MS.gene84396 | 0.800111 | 1.68E-48 | -1.69E-46 |
| MS.gene053630 | MS.gene84396 | 0.815428 | 9.29E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene84396 | 0.893309 | 7.09E-75 | -1.69E-46 |
| MS.gene054184 | MS.gene84396 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene84396 | 0.819246 | 1.28E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene84396 | 0.852695 | 3.90E-61 | -1.69E-46 |
| MS.gene054468 | MS.gene84396 | 0.806509 | 7.95E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene84396 | 0.841899 | 3.59E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene84396 | 0.81263 | 3.85E-51 | -1.69E-46 |
| MS.gene054667 | MS.gene84396 | 0.821307 | 4.33E-53 | -1.69E-46 |
| MS.gene054833 | MS.gene84396 | 0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene84396 | 0.881255 | 2.79E-70 | -1.69E-46 |
| MS.gene054942 | MS.gene84396 | 0.848081 | 7.69E-60 | -1.69E-46 |
| MS.gene054983 | MS.gene84396 | 0.830816 | 2.37E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene84396 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene84396 | 0.845724 | 3.40E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene84396 | 0.826234 | 3.03E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene84396 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene055712 | MS.gene84396 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene055816 | MS.gene84396 | -0.807559 | 4.76E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene84396 | -0.824887 | 6.33E-54 | -1.69E-46 |
| MS.gene056400 | MS.gene84396 | 0.817778 | 2.76E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene84396 | 0.852829 | 3.57E-61 | -1.69E-46 |
| MS.gene056979 | MS.gene84396 | 0.843622 | 1.25E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene84396 | 0.851181 | 1.05E-60 | -1.69E-46 |
| MS.gene057245 | MS.gene84396 | 0.83353 | 5.06E-56 | -1.69E-46 |
| MS.gene057260 | MS.gene84396 | 0.84293 | 1.91E-58 | -1.69E-46 |
| MS.gene057439 | MS.gene84396 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene84396 | 0.828777 | 7.45E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene84396 | 0.807429 | 5.08E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene84396 | 0.82515 | 5.48E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene84396 | 0.831236 | 1.87E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene84396 | 0.805995 | 1.02E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene84396 | 0.831525 | 1.59E-55 | -1.69E-46 |
| MS.gene057980 | MS.gene84396 | 0.818343 | 2.06E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene84396 | 0.825401 | 4.78E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene84396 | 0.836483 | 9.11E-57 | -1.69E-46 |
| MS.gene058139 | MS.gene84396 | 0.823247 | 1.54E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene84396 | 0.821535 | 3.83E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene84396 | 0.80904 | 2.30E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene84396 | 0.847915 | 8.55E-60 | -1.69E-46 |
| MS.gene058399 | MS.gene84396 | 0.824956 | 6.09E-54 | -1.69E-46 |
| MS.gene058710 | MS.gene84396 | 0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene84396 | 0.835297 | 1.82E-56 | -1.69E-46 |
| MS.gene058833 | MS.gene84396 | 0.829221 | 5.81E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene84396 | 0.848839 | 4.74E-60 | -1.69E-46 |
| MS.gene058851 | MS.gene84396 | 0.813926 | 2.00E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene84396 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene058982 | MS.gene84396 | 0.826426 | 2.73E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene84396 | 0.818542 | 1.86E-52 | -1.69E-46 |
| MS.gene059124 | MS.gene84396 | 0.826074 | 3.31E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene84396 | 0.817551 | 3.11E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene84396 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene84396 | 0.820654 | 6.12E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene84396 | 0.858808 | 6.39E-63 | -1.69E-46 |
| MS.gene059894 | MS.gene84396 | 0.808935 | 2.43E-50 | -1.69E-46 |
| MS.gene059899 | MS.gene84396 | 0.825456 | 4.64E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene84396 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene84396 | -0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene84396 | 0.806208 | 9.20E-50 | -1.69E-46 |
| MS.gene060404 | MS.gene84396 | 0.84462 | 6.75E-59 | -1.69E-46 |
| MS.gene060476 | MS.gene84396 | 0.824174 | 9.31E-54 | -1.69E-46 |
| MS.gene060480 | MS.gene84396 | 0.860324 | 2.24E-63 | -1.69E-46 |
| MS.gene060572 | MS.gene84396 | 0.813801 | 2.13E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene84396 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene84396 | 0.828259 | 9.93E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene84396 | 0.817757 | 2.79E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene84396 | 0.804489 | 2.11E-49 | -1.69E-46 |
| MS.gene060942 | MS.gene84396 | 0.800359 | 1.50E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene84396 | 0.811262 | 7.64E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene84396 | 0.832848 | 7.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84396.t1 | MTR_4g129850 | 71.795 | 78 | 20 | 1 | 26 | 101 | 106 | 183 | 1.82e-34 | 118 |
| MS.gene84396.t1 | MTR_0194s0040 | 77.333 | 75 | 17 | 0 | 26 | 100 | 119 | 193 | 5.45e-34 | 117 |
| MS.gene84396.t1 | MTR_4g129860 | 70.000 | 80 | 22 | 1 | 26 | 103 | 107 | 186 | 5.52e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84396.t1 | AT2G23820 | 79.487 | 78 | 16 | 0 | 26 | 103 | 145 | 222 | 4.88e-38 | 128 |
| MS.gene84396.t1 | AT2G23820 | 79.487 | 78 | 16 | 0 | 26 | 103 | 145 | 222 | 7.23e-38 | 128 |
| MS.gene84396.t1 | AT1G26160 | 77.333 | 75 | 17 | 0 | 26 | 100 | 141 | 215 | 2.91e-34 | 119 |
| MS.gene84396.t1 | AT1G26160 | 73.846 | 65 | 17 | 0 | 26 | 90 | 141 | 205 | 4.03e-27 | 99.4 |
Find 25 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGGTCCTTGACAAATT+TGG | 0.177402 | 2.3:+38596992 | None:intergenic |
| TCAATTTAGGTGTGTCAAAA+TGG | 0.249596 | 2.3:-38597407 | MS.gene84396:intron |
| TCCTTGACAAATTTGGCTTC+TGG | 0.302864 | 2.3:+38596999 | None:intergenic |
| TTTATCTTACAGCAATTGTT+GGG | 0.346868 | 2.3:-38597262 | MS.gene84396:CDS |
| CTTTATCTTACAGCAATTGT+TGG | 0.413282 | 2.3:-38597263 | MS.gene84396:CDS |
| ATTTGTCAAGGACCTTGATA+AGG | 0.434537 | 2.3:-38596988 | MS.gene84396:intron |
| GGGGACATAACGCCGATAGA+TGG | 0.441459 | 2.3:-38597242 | MS.gene84396:CDS |
| CTTCTTCATATTCCAAGGCT+TGG | 0.442580 | 2.3:+38595853 | None:intergenic |
| CCACAACTCAGCAATTTCCT+TGG | 0.443412 | 2.3:+38597046 | None:intergenic |
| CTTCATATTCCAAGGCTTGG+AGG | 0.445647 | 2.3:+38595856 | None:intergenic |
| CCAGTGCTTCTTGTTCTCGT+CGG | 0.472455 | 2.3:+38597198 | None:intergenic |
| CTCACCTTCTTCATATTCCA+AGG | 0.497793 | 2.3:+38595848 | None:intergenic |
| GGAGATGATCCTCCAAGCCT+TGG | 0.513734 | 2.3:-38595865 | MS.gene84396:CDS |
| GATCATATGTGTAAAGTGCT+TGG | 0.541181 | 2.3:-38597176 | MS.gene84396:CDS |
| CCAAGGAAATTGCTGAGTTG+TGG | 0.554797 | 2.3:-38597046 | MS.gene84396:CDS |
| ATGTGTAAAGTGCTTGGAGG+TGG | 0.558256 | 2.3:-38597170 | MS.gene84396:CDS |
| CCGACGAGAACAAGAAGCAC+TGG | 0.562109 | 2.3:-38597198 | MS.gene84396:CDS |
| AACATCCACAAACCTTATCA+AGG | 0.563248 | 2.3:+38596976 | None:intergenic |
| TCCAGAAGCCAAATTTGTCA+AGG | 0.579287 | 2.3:-38597000 | MS.gene84396:CDS |
| CAAGCCTTGGAATATGAAGA+AGG | 0.591196 | 2.3:-38595852 | MS.gene84396:CDS |
| GTGCTTGGAGGTGGATCTAG+AGG | 0.602978 | 2.3:-38597161 | MS.gene84396:intron |
| TTATCTTACAGCAATTGTTG+GGG | 0.614388 | 2.3:-38597261 | MS.gene84396:CDS |
| ATTGTTCATGATATCGCAGA+AGG | 0.617116 | 2.3:-38597382 | MS.gene84396:intron |
| GGAAATTGCTGAGTTGTGGA+CGG | 0.640826 | 2.3:-38597042 | MS.gene84396:CDS |
| CATATGTGTAAAGTGCTTGG+AGG | 0.648647 | 2.3:-38597173 | MS.gene84396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGTTAAAATCATTGAAA+AGG | + | chr2.3:38596385-38596404 | None:intergenic | 15.0% |
| !! | ATTTAAAAATCCCACTTATT+AGG | - | chr2.3:38597141-38597160 | MS.gene84396:intron | 20.0% |
| !! | CTGTATAGATCAAAATTTAA+AGG | + | chr2.3:38597403-38597422 | None:intergenic | 20.0% |
| !! | CTTTCAATGATTTATTTATG+AGG | - | chr2.3:38596349-38596368 | MS.gene84396:intron | 20.0% |
| !! | TAGAAAAGAATACAAAGTTA+AGG | + | chr2.3:38596607-38596626 | None:intergenic | 20.0% |
| !! | TTATATGCTGTTAAATCTTT+AGG | - | chr2.3:38596417-38596436 | MS.gene84396:intron | 20.0% |
| !!! | CTTTAAATTTTGATCTATAC+AGG | - | chr2.3:38597401-38597420 | MS.gene84396:CDS | 20.0% |
| !!! | TTAATCTAAAACCAAAATGA+TGG | + | chr2.3:38597336-38597355 | None:intergenic | 20.0% |
| !!! | TTTGTATAAATCCATCATTT+TGG | - | chr2.3:38597322-38597341 | MS.gene84396:intron | 20.0% |
| !!! | TTTTTCTTCTTCTTCAATTT+AGG | - | chr2.3:38595870-38595889 | MS.gene84396:CDS | 20.0% |
| ! | AAAAAACACTACCAAATTAG+TGG | + | chr2.3:38596769-38596788 | None:intergenic | 25.0% |
| ! | ATAACAAAGAAACAATGCAT+AGG | + | chr2.3:38596477-38596496 | None:intergenic | 25.0% |
| ! | ATTTATACAAAGTAATGGTC+CGG | + | chr2.3:38597313-38597332 | None:intergenic | 25.0% |
| ! | CTCAAAAAATACAATGACTT+AGG | + | chr2.3:38596891-38596910 | None:intergenic | 25.0% |
| ! | GTTAAATCTTTAGGCTTATT+GGG | - | chr2.3:38596426-38596445 | MS.gene84396:intron | 25.0% |
| ! | TAACAAAGAAACAATGCATA+GGG | + | chr2.3:38596476-38596495 | None:intergenic | 25.0% |
| ! | TCATTCTTACACTATCTATA+GGG | - | chr2.3:38596532-38596551 | MS.gene84396:intron | 25.0% |
| ! | TGTTAAATCTTTAGGCTTAT+TGG | - | chr2.3:38596425-38596444 | MS.gene84396:intron | 25.0% |
| ! | TTAAAGGATTCAAGTAACTA+GGG | + | chr2.3:38597387-38597406 | None:intergenic | 25.0% |
| ! | TTCATTCTTACACTATCTAT+AGG | - | chr2.3:38596531-38596550 | MS.gene84396:intron | 25.0% |
| ! | TTTAAAGGATTCAAGTAACT+AGG | + | chr2.3:38597388-38597407 | None:intergenic | 25.0% |
| ! | TTTATCTTACAGCAATTGTT+GGG | - | chr2.3:38596028-38596047 | MS.gene84396:intron | 25.0% |
| !! | AAGTGGGATTTTTAAATCTA+GGG | + | chr2.3:38597138-38597157 | None:intergenic | 25.0% |
| !! | GATGGATTTATACAAAGTAA+TGG | + | chr2.3:38597318-38597337 | None:intergenic | 25.0% |
| !! | TAAGTGGGATTTTTAAATCT+AGG | + | chr2.3:38597139-38597158 | None:intergenic | 25.0% |
| !! | TTGTTTTCTTTTCTTTCATG+TGG | - | chr2.3:38595935-38595954 | MS.gene84396:intron | 25.0% |
| !! | TTTGTTATACATAGACATAG+AGG | - | chr2.3:38596489-38596508 | MS.gene84396:intron | 25.0% |
| !!! | ATTAGTTTGTTATGAACCTA+GGG | - | chr2.3:38596646-38596665 | MS.gene84396:intron | 25.0% |
| !!! | TAAATTTTGATCTATACAGG+TGG | - | chr2.3:38597404-38597423 | MS.gene84396:intron | 25.0% |
| !!! | TATTAGTTTGTTATGAACCT+AGG | - | chr2.3:38596645-38596664 | MS.gene84396:intron | 25.0% |
| !!! | TTTTTTTGAGAAAGCATAAG+AGG | - | chr2.3:38596787-38596806 | MS.gene84396:intron | 25.0% |
| AAGTTAAGGTGACAAAATGT+CGG | + | chr2.3:38596593-38596612 | None:intergenic | 30.0% | |
| AATACAATGACTTAGGACTT+TGG | + | chr2.3:38596884-38596903 | None:intergenic | 30.0% | |
| ACAGGTTTGATAAAATCTAC+TGG | + | chr2.3:38597277-38597296 | None:intergenic | 30.0% | |
| CTTTATCTTACAGCAATTGT+TGG | - | chr2.3:38596027-38596046 | MS.gene84396:intron | 30.0% | |
| TCAATTTAGGTGTGTCAAAA+TGG | - | chr2.3:38595883-38595902 | MS.gene84396:intron | 30.0% | |
| TCCAAACATAGATAAGTAAC+AGG | + | chr2.3:38595981-38596000 | None:intergenic | 30.0% | |
| TTATCTTACAGCAATTGTTG+GGG | - | chr2.3:38596029-38596048 | MS.gene84396:intron | 30.0% | |
| ! | CTTTGTTTAGGAGTTAATAG+GGG | - | chr2.3:38596708-38596727 | MS.gene84396:intron | 30.0% |
| ! | TCCTGTTACTTATCTATGTT+TGG | - | chr2.3:38595977-38595996 | MS.gene84396:intron | 30.0% |
| ! | TTTCTTTTCTTTCATGTGGT+GGG | - | chr2.3:38595939-38595958 | MS.gene84396:intron | 30.0% |
| ! | TTTGAGTTCCTCCATATTAT+GGG | - | chr2.3:38596905-38596924 | MS.gene84396:intron | 30.0% |
| ! | TTTTCTTTTCTTTCATGTGG+TGG | - | chr2.3:38595938-38595957 | MS.gene84396:intron | 30.0% |
| !! | GCTTTGTTTAGGAGTTAATA+GGG | - | chr2.3:38596707-38596726 | MS.gene84396:intron | 30.0% |
| !!! | AATGAAAAGGAGTGTTTTTG+AGG | - | chr2.3:38596731-38596750 | MS.gene84396:intron | 30.0% |
| !!! | ATGAAAAGGAGTGTTTTTGA+GGG | - | chr2.3:38596732-38596751 | MS.gene84396:intron | 30.0% |
| !!! | TCTTTTGGAATTCCATCTAT+CGG | + | chr2.3:38596063-38596082 | None:intergenic | 30.0% |
| !!! | TTTTGAGTTCCTCCATATTA+TGG | - | chr2.3:38596904-38596923 | MS.gene84396:intron | 30.0% |
| AACATCCACAAACCTTATCA+AGG | + | chr2.3:38596317-38596336 | None:intergenic | 35.0% | |
| AACTCCTAAACAAAGCCTAA+CGG | + | chr2.3:38596703-38596722 | None:intergenic | 35.0% | |
| AGCACCAATGTTATGAACAT+AGG | - | chr2.3:38597054-38597073 | MS.gene84396:intron | 35.0% | |
| ATCAAAACCCCATAATATGG+AGG | + | chr2.3:38596916-38596935 | None:intergenic | 35.0% | |
| ATCAAGGTCCTTGACAAATT+TGG | + | chr2.3:38596301-38596320 | None:intergenic | 35.0% | |
| ATTGTTCATGATATCGCAGA+AGG | - | chr2.3:38595908-38595927 | MS.gene84396:intron | 35.0% | |
| ATTTGTCAAGGACCTTGATA+AGG | - | chr2.3:38596302-38596321 | MS.gene84396:intron | 35.0% | |
| GAGGAATCATTCCACTAATT+TGG | - | chr2.3:38596755-38596774 | MS.gene84396:intron | 35.0% | |
| GAGTTAATAGGGGAATGAAA+AGG | - | chr2.3:38596718-38596737 | MS.gene84396:intron | 35.0% | |
| TGATAAGGTTTGTGGATGTT+TGG | - | chr2.3:38596317-38596336 | MS.gene84396:intron | 35.0% | |
| TGGATCAAAACCCCATAATA+TGG | + | chr2.3:38596919-38596938 | None:intergenic | 35.0% | |
| TTGAGTTCCTCCATATTATG+GGG | - | chr2.3:38596906-38596925 | MS.gene84396:intron | 35.0% | |
| ! | ACTTTGTTTGGGAGTTTGTA+GGG | + | chr2.3:38596976-38596995 | None:intergenic | 35.0% |
| ! | CATTTTCAACAATGAAGCCA+AGG | - | chr2.3:38596227-38596246 | MS.gene84396:intron | 35.0% |
| ! | GATCATATGTGTAAAGTGCT+TGG | - | chr2.3:38596114-38596133 | MS.gene84396:intron | 35.0% |
| ! | TTTTTACGAGTCCCAAATTG+AGG | + | chr2.3:38597174-38597193 | None:intergenic | 35.0% |
| !! | GGCTTTGTTTAGGAGTTAAT+AGG | - | chr2.3:38596706-38596725 | MS.gene84396:intron | 35.0% |
| !!! | ACCTGTCAAATAGTTTTGTC+CGG | - | chr2.3:38597291-38597310 | MS.gene84396:intron | 35.0% |
| !!! | TGAAAAGGAGTGTTTTTGAG+GGG | - | chr2.3:38596733-38596752 | MS.gene84396:intron | 35.0% |
| AAACTCCCAAACAAAGTCGT+AGG | - | chr2.3:38596979-38596998 | MS.gene84396:intron | 40.0% | |
| AAGGACCTTGATAAGGTTTG+TGG | - | chr2.3:38596309-38596328 | MS.gene84396:intron | 40.0% | |
| ACAATGACTTAGGACTTTGG+AGG | + | chr2.3:38596881-38596900 | None:intergenic | 40.0% | |
| CAAGCCTTGGAATATGAAGA+AGG | - | chr2.3:38597438-38597457 | MS.gene84396:intron | 40.0% | |
| CAATGACTTAGGACTTTGGA+GGG | + | chr2.3:38596880-38596899 | None:intergenic | 40.0% | |
| CTCACCTTCTTCATATTCCA+AGG | + | chr2.3:38597445-38597464 | None:intergenic | 40.0% | |
| CTTCTTCATATTCCAAGGCT+TGG | + | chr2.3:38597440-38597459 | None:intergenic | 40.0% | |
| TCCAGAAGCCAAATTTGTCA+AGG | - | chr2.3:38596290-38596309 | MS.gene84396:intron | 40.0% | |
| TCCGGACAAAACTATTTGAC+AGG | + | chr2.3:38597295-38597314 | None:intergenic | 40.0% | |
| TGATAAAATCTACTGGCAGC+AGG | + | chr2.3:38597270-38597289 | None:intergenic | 40.0% | |
| TGGGCCTATGTTCATAACAT+TGG | + | chr2.3:38597061-38597080 | None:intergenic | 40.0% | |
| ! | ACATTGGTGCTTTCATTGAG+AGG | + | chr2.3:38597045-38597064 | None:intergenic | 40.0% |
| ! | AGTAGGCTAGTCATTTGTGA+TGG | + | chr2.3:38597094-38597113 | None:intergenic | 40.0% |
| ! | CATATGTGTAAAGTGCTTGG+AGG | - | chr2.3:38596117-38596136 | MS.gene84396:intron | 40.0% |
| ! | CTTTGTTTGGGAGTTTGTAG+GGG | + | chr2.3:38596975-38596994 | None:intergenic | 40.0% |
| ! | GACTTTGTTTGGGAGTTTGT+AGG | + | chr2.3:38596977-38596996 | None:intergenic | 40.0% |
| ! | GTAGGCTAGTCATTTGTGAT+GGG | + | chr2.3:38597093-38597112 | None:intergenic | 40.0% |
| ! | TAGACTCTCGTTTTATCCCT+AGG | + | chr2.3:38596665-38596684 | None:intergenic | 40.0% |
| ! | TCCTTGACAAATTTGGCTTC+TGG | + | chr2.3:38596294-38596313 | None:intergenic | 40.0% |
| ! | TCTCACCTACGACTTTGTTT+GGG | + | chr2.3:38596987-38597006 | None:intergenic | 40.0% |
| !! | AAATGACTAGCCTACTAGGT+GGG | - | chr2.3:38597098-38597117 | MS.gene84396:intron | 40.0% |
| !! | ATGGGGTTTTGATCCAATGA+AGG | - | chr2.3:38596923-38596942 | MS.gene84396:intron | 40.0% |
| !! | TCACAAATGACTAGCCTACT+AGG | - | chr2.3:38597094-38597113 | MS.gene84396:intron | 40.0% |
| !! | TGGGGTTTTGATCCAATGAA+GGG | - | chr2.3:38596924-38596943 | MS.gene84396:intron | 40.0% |
| !! | TGTGCTTTTTGTCTTCTCGA+AGG | - | chr2.3:38597194-38597213 | MS.gene84396:CDS | 40.0% |
| !!! | AGATTTTTTCCCCCCTTCAT+TGG | + | chr2.3:38596939-38596958 | None:intergenic | 40.0% |
| AGGAGTGACGCCTAATAAGT+GGG | + | chr2.3:38597154-38597173 | None:intergenic | 45.0% | |
| CCAAGGAAATTGCTGAGTTG+TGG | - | chr2.3:38596244-38596263 | MS.gene84396:intron | 45.0% | |
| CCACAACTCAGCAATTTCCT+TGG | + | chr2.3:38596247-38596266 | None:intergenic | 45.0% | |
| CTCTCACCTACGACTTTGTT+TGG | + | chr2.3:38596988-38597007 | None:intergenic | 45.0% | |
| CTTCATATTCCAAGGCTTGG+AGG | + | chr2.3:38597437-38597456 | None:intergenic | 45.0% | |
| GGAAATTGCTGAGTTGTGGA+CGG | - | chr2.3:38596248-38596267 | MS.gene84396:intron | 45.0% | |
| TAGGCGTCACTCCTCAATTT+GGG | - | chr2.3:38597160-38597179 | MS.gene84396:intron | 45.0% | |
| TAGGTGAGAGAACCCTTTGT+GGG | - | chr2.3:38596998-38597017 | MS.gene84396:CDS | 45.0% | |
| TTAGGCGTCACTCCTCAATT+TGG | - | chr2.3:38597159-38597178 | MS.gene84396:intron | 45.0% | |
| TTTGGGAGTTTGTAGGGGAA+GGG | + | chr2.3:38596970-38596989 | None:intergenic | 45.0% | |
| ! | ATGTGTAAAGTGCTTGGAGG+TGG | - | chr2.3:38596120-38596139 | MS.gene84396:intron | 45.0% |
| ! | TTTCTTTCATGTGGTGGGAG+TGG | - | chr2.3:38595944-38595963 | MS.gene84396:intron | 45.0% |
| !! | CAAATGACTAGCCTACTAGG+TGG | - | chr2.3:38597097-38597116 | MS.gene84396:intron | 45.0% |
| !! | GGGGTTTTGATCCAATGAAG+GGG | - | chr2.3:38596925-38596944 | MS.gene84396:intron | 45.0% |
| !! | GGGTTTTGATCCAATGAAGG+GGG | - | chr2.3:38596926-38596945 | MS.gene84396:intron | 45.0% |
| !! | GGTTTTGATCCAATGAAGGG+GGG | - | chr2.3:38596927-38596946 | MS.gene84396:intron | 45.0% |
| !! | TGGTCCGTTAGGCTTTGTTT+AGG | - | chr2.3:38596696-38596715 | MS.gene84396:intron | 45.0% |
| !! | TTGTGATGGGCTCTCTCTTT+GGG | + | chr2.3:38597080-38597099 | None:intergenic | 45.0% |
| !! | TTTGTGATGGGCTCTCTCTT+TGG | + | chr2.3:38597081-38597100 | None:intergenic | 45.0% |
| !!! | AAAGGAGTGTTTTTGAGGGG+AGG | - | chr2.3:38596736-38596755 | MS.gene84396:intron | 45.0% |
| !!! | CGTCGGCTTTTCTCTTCTTT+TGG | + | chr2.3:38596078-38596097 | None:intergenic | 45.0% |
| AGCCTACTAGGTGGGATTGT+GGG | - | chr2.3:38597106-38597125 | MS.gene84396:intron | 50.0% | |
| CCAGTGCTTCTTGTTCTCGT+CGG | + | chr2.3:38596095-38596114 | None:intergenic | 50.0% | |
| GAGAGTCTACCCCAAAAGAC+TGG | - | chr2.3:38596676-38596695 | MS.gene84396:intron | 50.0% | |
| GAGGAGTGACGCCTAATAAG+TGG | + | chr2.3:38597155-38597174 | None:intergenic | 50.0% | |
| GTAGGTGAGAGAACCCTTTG+TGG | - | chr2.3:38596997-38597016 | MS.gene84396:CDS | 50.0% | |
| GTTTGGGAGTTTGTAGGGGA+AGG | + | chr2.3:38596971-38596990 | None:intergenic | 50.0% | |
| TAGCCTACTAGGTGGGATTG+TGG | - | chr2.3:38597105-38597124 | MS.gene84396:intron | 50.0% | |
| !! | AGCCTAACGGACCAGTCTTT+TGG | + | chr2.3:38596690-38596709 | None:intergenic | 50.0% |
| !! | CCTAACGGACCAGTCTTTTG+GGG | + | chr2.3:38596688-38596707 | None:intergenic | 50.0% |
| !! | GCCTAACGGACCAGTCTTTT+GGG | + | chr2.3:38596689-38596708 | None:intergenic | 50.0% |
| AGGAAGAGGGCTACCCACAA+AGG | + | chr2.3:38597014-38597033 | None:intergenic | 55.0% | |
| CTCCCACAATCCCACCTAGT+AGG | + | chr2.3:38597111-38597130 | None:intergenic | 55.0% | |
| GAGTTTGTAGGGGAAGGGAG+GGG | + | chr2.3:38596965-38596984 | None:intergenic | 55.0% | |
| GGAAGAGGGCTACCCACAAA+GGG | + | chr2.3:38597013-38597032 | None:intergenic | 55.0% | |
| GGAGATGATCCTCCAAGCCT+TGG | - | chr2.3:38597425-38597444 | MS.gene84396:intron | 55.0% | |
| GGAGTTTGTAGGGGAAGGGA+GGG | + | chr2.3:38596966-38596985 | None:intergenic | 55.0% | |
| GGGGACATAACGCCGATAGA+TGG | - | chr2.3:38596048-38596067 | MS.gene84396:intron | 55.0% | |
| GTGCTTGGAGGTGGATCTAG+AGG | - | chr2.3:38596129-38596148 | MS.gene84396:intron | 55.0% | |
| TTCATTGAGAGGCCGACCTC+AGG | + | chr2.3:38597034-38597053 | None:intergenic | 55.0% | |
| ! | CCCCAAAAGACTGGTCCGTT+AGG | - | chr2.3:38596685-38596704 | MS.gene84396:intron | 55.0% |
| ! | CCGACGAGAACAAGAAGCAC+TGG | - | chr2.3:38596092-38596111 | MS.gene84396:intron | 55.0% |
| AGAGGCCGACCTCAGGAAGA+GGG | + | chr2.3:38597027-38597046 | None:intergenic | 60.0% | |
| GGGAGTTTGTAGGGGAAGGG+AGG | + | chr2.3:38596967-38596986 | None:intergenic | 60.0% | |
| GGTAGCCCTCTTCCTGAGGT+CGG | - | chr2.3:38597019-38597038 | MS.gene84396:CDS | 60.0% | |
| TGTGGGTAGCCCTCTTCCTG+AGG | - | chr2.3:38597015-38597034 | MS.gene84396:CDS | 60.0% | |
| TTTGTAGGGGAAGGGAGGGG+AGG | + | chr2.3:38596962-38596981 | None:intergenic | 60.0% | |
| ! | CATGTGGTGGGAGTGGAGTG+TGG | - | chr2.3:38595951-38595970 | MS.gene84396:intron | 60.0% |
| GAGAGGCCGACCTCAGGAAG+AGG | + | chr2.3:38597028-38597047 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 38595839 | 38597473 | 38595839 | ID=MS.gene84396 |
| chr2.3 | mRNA | 38595839 | 38597473 | 38595839 | ID=MS.gene84396.t1;Parent=MS.gene84396 |
| chr2.3 | exon | 38597470 | 38597473 | 38597470 | ID=MS.gene84396.t1.exon1;Parent=MS.gene84396.t1 |
| chr2.3 | CDS | 38597470 | 38597473 | 38597470 | ID=cds.MS.gene84396.t1;Parent=MS.gene84396.t1 |
| chr2.3 | exon | 38597383 | 38597420 | 38597383 | ID=MS.gene84396.t1.exon2;Parent=MS.gene84396.t1 |
| chr2.3 | CDS | 38597383 | 38597420 | 38597383 | ID=cds.MS.gene84396.t1;Parent=MS.gene84396.t1 |
| chr2.3 | exon | 38597162 | 38597306 | 38597162 | ID=MS.gene84396.t1.exon3;Parent=MS.gene84396.t1 |
| chr2.3 | CDS | 38597162 | 38597306 | 38597162 | ID=cds.MS.gene84396.t1;Parent=MS.gene84396.t1 |
| chr2.3 | exon | 38596989 | 38597068 | 38596989 | ID=MS.gene84396.t1.exon4;Parent=MS.gene84396.t1 |
| chr2.3 | CDS | 38596989 | 38597068 | 38596989 | ID=cds.MS.gene84396.t1;Parent=MS.gene84396.t1 |
| chr2.3 | exon | 38595839 | 38595889 | 38595839 | ID=MS.gene84396.t1.exon5;Parent=MS.gene84396.t1 |
| chr2.3 | CDS | 38595839 | 38595889 | 38595839 | ID=cds.MS.gene84396.t1;Parent=MS.gene84396.t1 |
| Gene Sequence |
| Protein sequence |
