Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87954.t1 | XP_013451570.1 | 95.2 | 63 | 3 | 0 | 398 | 460 | 355 | 417 | 4.50E-20 | 109.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87954.t1 | A0A072U911 | 95.2 | 63 | 3 | 0 | 398 | 460 | 355 | 417 | 3.3e-20 | 109.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene87954 | 0.830217 | 3.33E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene87954 | 0.826711 | 2.34E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene87954 | 0.843555 | 1.30E-58 | -1.69E-46 |
| MS.gene04920 | MS.gene87954 | 0.826793 | 2.23E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene87954 | 0.855264 | 7.09E-62 | -1.69E-46 |
| MS.gene049343 | MS.gene87954 | 0.844986 | 5.38E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene87954 | 0.82775 | 1.32E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene87954 | 0.811243 | 7.72E-51 | -1.69E-46 |
| MS.gene049452 | MS.gene87954 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene87954 | 0.823943 | 1.05E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene87954 | 0.824703 | 6.99E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene87954 | 0.808481 | 3.03E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene87954 | 0.80768 | 4.49E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene87954 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene87954 | 0.851249 | 1.00E-60 | -1.69E-46 |
| MS.gene050026 | MS.gene87954 | 0.803577 | 3.26E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene87954 | 0.816318 | 5.88E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene87954 | 0.811788 | 5.88E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene87954 | 0.815672 | 8.20E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene87954 | 0.828468 | 8.84E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene87954 | 0.814294 | 1.66E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene87954 | 0.821431 | 4.05E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene87954 | 0.81787 | 2.64E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene87954 | 0.838227 | 3.26E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene87954 | 0.810484 | 1.13E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene87954 | 0.808251 | 3.40E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene87954 | 0.810358 | 1.20E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene87954 | 0.819073 | 1.41E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene87954 | 0.842836 | 2.03E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene87954 | 0.802874 | 4.56E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene87954 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene87954 | 0.837331 | 5.54E-57 | -1.69E-46 |
| MS.gene052518 | MS.gene87954 | 0.821699 | 3.51E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene87954 | 0.881214 | 2.89E-70 | -1.69E-46 |
| MS.gene052582 | MS.gene87954 | 0.838828 | 2.28E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene87954 | 0.848854 | 4.70E-60 | -1.69E-46 |
| MS.gene052773 | MS.gene87954 | 0.82557 | 4.36E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene87954 | 0.836944 | 6.96E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene87954 | 0.854129 | 1.51E-61 | -1.69E-46 |
| MS.gene053008 | MS.gene87954 | 0.844301 | 8.23E-59 | -1.69E-46 |
| MS.gene053079 | MS.gene87954 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene053122 | MS.gene87954 | 0.821789 | 3.35E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene87954 | 0.858574 | 7.50E-63 | -1.69E-46 |
| MS.gene053272 | MS.gene87954 | -0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene87954 | 0.844546 | 7.07E-59 | -1.69E-46 |
| MS.gene053931 | MS.gene87954 | 0.835194 | 1.93E-56 | -1.69E-46 |
| MS.gene054142 | MS.gene87954 | 0.806496 | 8.00E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene87954 | 0.808902 | 2.47E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene87954 | 0.828655 | 7.97E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene87954 | 0.866317 | 3.11E-65 | -1.69E-46 |
| MS.gene054775 | MS.gene87954 | 0.834302 | 3.24E-56 | -1.69E-46 |
| MS.gene05517 | MS.gene87954 | 0.830953 | 2.20E-55 | -1.69E-46 |
| MS.gene055228 | MS.gene87954 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene055464 | MS.gene87954 | 0.801777 | 7.67E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene87954 | 0.821087 | 4.86E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene87954 | 0.816633 | 5.00E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene87954 | 0.810452 | 1.14E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene87954 | 0.832959 | 7.02E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene87954 | -0.823391 | 1.42E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene87954 | 0.811603 | 6.44E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene87954 | 0.805245 | 1.46E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene87954 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene87954 | 0.837146 | 6.17E-57 | -1.69E-46 |
| MS.gene056043 | MS.gene87954 | -0.810201 | 1.30E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene87954 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene87954 | 0.819239 | 1.29E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene87954 | 0.822984 | 1.77E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene87954 | 0.821862 | 3.22E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene87954 | 0.833094 | 6.50E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene87954 | 0.824251 | 8.93E-54 | -1.69E-46 |
| MS.gene056776 | MS.gene87954 | 0.81888 | 1.56E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene87954 | 0.841053 | 6.00E-58 | -1.69E-46 |
| MS.gene05690 | MS.gene87954 | 0.857095 | 2.06E-62 | -1.69E-46 |
| MS.gene057034 | MS.gene87954 | 0.814605 | 1.41E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene87954 | 0.839555 | 1.48E-57 | -1.69E-46 |
| MS.gene057208 | MS.gene87954 | 0.856372 | 3.36E-62 | -1.69E-46 |
| MS.gene057444 | MS.gene87954 | 0.841015 | 6.14E-58 | -1.69E-46 |
| MS.gene057598 | MS.gene87954 | 0.80467 | 1.93E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene87954 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene057694 | MS.gene87954 | 0.805485 | 1.30E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene87954 | 0.81374 | 2.20E-51 | -1.69E-46 |
| MS.gene057932 | MS.gene87954 | 0.832079 | 1.16E-55 | -1.69E-46 |
| MS.gene058008 | MS.gene87954 | 0.834688 | 2.59E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene87954 | 0.855356 | 6.67E-62 | -1.69E-46 |
| MS.gene058010 | MS.gene87954 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene87954 | 0.81929 | 1.26E-52 | -1.69E-46 |
| MS.gene058088 | MS.gene87954 | 0.813119 | 3.01E-51 | -1.69E-46 |
| MS.gene058279 | MS.gene87954 | 0.809587 | 1.76E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene87954 | 0.829272 | 5.65E-55 | -1.69E-46 |
| MS.gene058781 | MS.gene87954 | 0.849832 | 2.51E-60 | -1.69E-46 |
| MS.gene058783 | MS.gene87954 | 0.874509 | 6.39E-68 | -1.69E-46 |
| MS.gene058979 | MS.gene87954 | 0.842401 | 2.65E-58 | -1.69E-46 |
| MS.gene059146 | MS.gene87954 | 0.810985 | 8.78E-51 | -1.69E-46 |
| MS.gene059151 | MS.gene87954 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene87954 | 0.813101 | 3.03E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene87954 | 0.843496 | 1.35E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene87954 | 0.856311 | 3.50E-62 | -1.69E-46 |
| MS.gene05985 | MS.gene87954 | -0.825886 | 3.67E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene87954 | -0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene87954 | 0.845694 | 3.46E-59 | -1.69E-46 |
| MS.gene060322 | MS.gene87954 | 0.831116 | 2.00E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene87954 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene87954 | 0.836257 | 1.04E-56 | -1.69E-46 |
| MS.gene060521 | MS.gene87954 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene87954 | 0.858938 | 5.84E-63 | -1.69E-46 |
| MS.gene060937 | MS.gene87954 | 0.836775 | 7.68E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene87954 | 0.833393 | 5.47E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87954.t1 | MTR_6g028130 | 92.386 | 197 | 15 | 0 | 1 | 197 | 1 | 197 | 9.72e-33 | 129 |
| MS.gene87954.t1 | MTR_6g028130 | 94.059 | 101 | 6 | 0 | 360 | 460 | 317 | 417 | 3.99e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTTGCTGAGGATAAAA+AGG | 0.295046 | 6.1:-10837397 | MS.gene87954:CDS |
| CTTCAGCTTGCTGACATCAT+TGG | 0.314579 | 6.1:+10836516 | None:intergenic |
| GGATGAAAAGAAGAAGAAAA+AGG | 0.339456 | 6.1:-10837331 | MS.gene87954:CDS |
| TGGCGAAGAGAATAAGAAAA+AGG | 0.375379 | 6.1:-10836881 | MS.gene87954:CDS |
| CTTCTTCTCTTCTCCATCAT+CGG | 0.378473 | 6.1:+10837089 | None:intergenic |
| GAAAAGAAAGACAAGGGAAA+GGG | 0.380268 | 6.1:-10836916 | MS.gene87954:CDS |
| GAAAAGAAAGACAAGGGAAA+GGG | 0.380268 | 6.1:-10837051 | MS.gene87954:CDS |
| GAAAGAGAAGAAAGATGATA+AGG | 0.398401 | 6.1:-10836695 | MS.gene87954:CDS |
| GAAGTTGTTTCGAGGGAGAT+AGG | 0.398534 | 6.1:-10836670 | MS.gene87954:CDS |
| GGGAAGAAGAGAAAGTTATC+TGG | 0.404078 | 6.1:-10836550 | MS.gene87954:CDS |
| TCAGATGATTCTAAAGATAT+CGG | 0.416847 | 6.1:-10837594 | MS.gene87954:CDS |
| CAGCTACTCAACCGCATCCT+TGG | 0.418843 | 6.1:+10836381 | None:intergenic |
| GAAAGAAAAGGTGAAAAGTA+AGG | 0.419739 | 6.1:-10837439 | MS.gene87954:CDS |
| ATCTTCTTCCGCTTTCTCCT+CGG | 0.426624 | 6.1:+10836636 | None:intergenic |
| TGAGAAAGAAGGTGATGTAA+AGG | 0.431997 | 6.1:-10837700 | MS.gene87954:CDS |
| CTTCTTCGCTTCTCCTTCAT+CGG | 0.436907 | 6.1:+10836795 | None:intergenic |
| AGAAACACTTCTTGAACAAA+AGG | 0.438069 | 6.1:-10836464 | MS.gene87954:CDS |
| GTTCTTCTCTTCTCCATCAT+CGG | 0.438481 | 6.1:+10836954 | None:intergenic |
| CAAAAGCTTGAAAAGATCAA+TGG | 0.445389 | 6.1:-10836493 | MS.gene87954:CDS |
| AGGAGAGGATAGTGAAAAGA+AGG | 0.464984 | 6.1:-10837259 | MS.gene87954:CDS |
| GAAGATGAGGAAATTGATGA+TGG | 0.465754 | 6.1:-10836619 | MS.gene87954:CDS |
| AGAAAAGAAAGACAAGGGAA+AGG | 0.469773 | 6.1:-10836917 | MS.gene87954:CDS |
| AGAAAAGAAAGACAAGGGAA+AGG | 0.469773 | 6.1:-10837052 | MS.gene87954:CDS |
| GAAAACAGAGAAGAAAGAAA+AGG | 0.469942 | 6.1:-10837451 | MS.gene87954:CDS |
| AAAAGCTTGAAAAGATCAAT+GGG | 0.470870 | 6.1:-10836492 | MS.gene87954:CDS |
| TGAAGGTGAAGACGGTAAGA+AGG | 0.475165 | 6.1:-10837364 | MS.gene87954:CDS |
| GAAGAGAAAGTTATCTGGAA+AGG | 0.479246 | 6.1:-10836545 | MS.gene87954:CDS |
| AAACAAGGGTGAGGAAGAAG+AGG | 0.485502 | 6.1:-10836749 | MS.gene87954:CDS |
| ACACGGTGACAAGGAAGAAA+AGG | 0.490673 | 6.1:-10837550 | MS.gene87954:CDS |
| GGGGAAAGAAGATGTAGGAG+AGG | 0.491438 | 6.1:-10837274 | MS.gene87954:CDS |
| AAGGAGAATAAAGACAAGGA+TGG | 0.499016 | 6.1:-10837420 | MS.gene87954:CDS |
| CGATGAAGGAGAAGCGAAGA+AGG | 0.499033 | 6.1:-10836794 | MS.gene87954:CDS |
| GTGGTGAAATCGACGGGAAA+GGG | 0.501431 | 6.1:-10837186 | MS.gene87954:CDS |
| TCTAAAGATATCGGTGAAGA+TGG | 0.508358 | 6.1:-10837585 | MS.gene87954:CDS |
| TGATAAAATCAAGCCGAAGA+AGG | 0.516483 | 6.1:-10836830 | MS.gene87954:CDS |
| CTTCAGTTCTACTTCTAACT+CGG | 0.517888 | 6.1:+10837668 | None:intergenic |
| CGATGATGGAGAAGAGAAGA+AGG | 0.519003 | 6.1:-10837088 | MS.gene87954:CDS |
| AGGTTATGTCGTCGTGGAGA+AGG | 0.529920 | 6.1:-10836404 | MS.gene87954:CDS |
| GGAAAGGGAGATGAGGATGA+TGG | 0.533215 | 6.1:-10836901 | MS.gene87954:CDS |
| ATAAGGATGAAGTTGTTTCG+AGG | 0.535585 | 6.1:-10836678 | MS.gene87954:CDS |
| AAAGAAGACAAGGACAAAGG+TGG | 0.536507 | 6.1:-10836571 | MS.gene87954:CDS |
| AGACAAGGGAAAGGGAGATG+AGG | 0.545147 | 6.1:-10836908 | MS.gene87954:CDS |
| CGTGGAGAAGGCCAAGGATG+CGG | 0.547057 | 6.1:-10836392 | MS.gene87954:CDS |
| TGGGAAGGAAGTGAAAGAGA+AGG | 0.550834 | 6.1:-10836599 | MS.gene87954:CDS |
| TGAAGAGATCGAAACAAAGA+AGG | 0.552163 | 6.1:-10837301 | MS.gene87954:CDS |
| TAAGGATGAAGTTGTTTCGA+GGG | 0.553952 | 6.1:-10836677 | MS.gene87954:CDS |
| TGTGGTGAAATCGACGGGAA+AGG | 0.558629 | 6.1:-10837187 | MS.gene87954:CDS |
| AAAGGTGATGAAGGTGAAGA+CGG | 0.561058 | 6.1:-10837372 | MS.gene87954:CDS |
| AAGAAGACAAGGACAAAGGT+GGG | 0.568761 | 6.1:-10836570 | MS.gene87954:CDS |
| CGAGTTAGAAGTAGAACTGA+AGG | 0.569653 | 6.1:-10837667 | MS.gene87954:CDS |
| TGAGGAAATTGATGATGGGA+AGG | 0.571455 | 6.1:-10836614 | MS.gene87954:CDS |
| AAGACTGAGGATGAGAAAGA+AGG | 0.573061 | 6.1:-10837711 | MS.gene87954:CDS |
| GAATAAAGACAAGGATGGAG+TGG | 0.576722 | 6.1:-10837415 | MS.gene87954:CDS |
| GGAGAAAGCGGAAGAAGATG+AGG | 0.582784 | 6.1:-10836632 | MS.gene87954:CDS |
| AACAAGGGTGAGGAAGAAGA+GGG | 0.584773 | 6.1:-10836748 | MS.gene87954:CDS |
| GGAAAGGGAGACGAGGATGA+CGG | 0.585914 | 6.1:-10837036 | MS.gene87954:CDS |
| GATGATGTGGTGAAATCGAC+GGG | 0.591968 | 6.1:-10837192 | MS.gene87954:CDS |
| ATCGAAACAAAGAAGGACAA+GGG | 0.592480 | 6.1:-10837294 | MS.gene87954:CDS |
| ATACGAGAAGCAGAAGATGA+AGG | 0.592634 | 6.1:-10836424 | MS.gene87954:CDS |
| AAGATGAGGAAATTGATGAT+GGG | 0.593304 | 6.1:-10836618 | MS.gene87954:CDS |
| GACAAGGGGAAAGAAGATGT+AGG | 0.593494 | 6.1:-10837279 | MS.gene87954:CDS |
| ATCGACGGGAAAGGGAGAAG+AGG | 0.608750 | 6.1:-10837178 | MS.gene87954:CDS |
| TCGAAACAAAGAAGGACAAG+GGG | 0.610740 | 6.1:-10837293 | MS.gene87954:CDS |
| ACAAAAGACCGAGGAGAAAG+CGG | 0.613724 | 6.1:-10836644 | MS.gene87954:CDS |
| GATCGAAACAAAGAAGGACA+AGG | 0.618475 | 6.1:-10837295 | MS.gene87954:CDS |
| CAAGGATGGAGTGGTTGCTG+AGG | 0.621637 | 6.1:-10837406 | MS.gene87954:CDS |
| TGAGAATAAACACGGTGACA+AGG | 0.628299 | 6.1:-10837559 | MS.gene87954:CDS |
| GGAAAGGGAGAAGAGGATGA+CGG | 0.633241 | 6.1:-10837171 | MS.gene87954:CDS |
| AGACAAGGGAAAGGGAGACG+AGG | 0.635113 | 6.1:-10837043 | MS.gene87954:CDS |
| TGTCGTCGTGGAGAAGGCCA+AGG | 0.642134 | 6.1:-10836398 | MS.gene87954:CDS |
| GTTGTTTCGAGGGAGATAGG+TGG | 0.649540 | 6.1:-10836667 | MS.gene87954:CDS |
| CTCTCTAAAGATCAAGACTG+AGG | 0.653524 | 6.1:-10837724 | MS.gene87954:CDS |
| TGATGATGTGGTGAAATCGA+CGG | 0.654535 | 6.1:-10837193 | MS.gene87954:CDS |
| AAGTAAGGAGAATAAAGACA+AGG | 0.656406 | 6.1:-10837424 | MS.gene87954:CDS |
| AAAGCACAAGGATGATGATG+TGG | 0.673676 | 6.1:-10837205 | MS.gene87954:CDS |
| AGATGAAGGTTATGTCGTCG+TGG | 0.684945 | 6.1:-10836410 | MS.gene87954:CDS |
| GATGGTAGTGAGAATAAACA+CGG | 0.724895 | 6.1:-10837567 | MS.gene87954:CDS |
| GATAGGTGGACAAAAGACCG+AGG | 0.748856 | 6.1:-10836653 | MS.gene87954:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAGAAAAACAA+GGG | - | chr6.1:10837365-10837384 | MS.gene87954:CDS | 15.0% |
| !! | AAAAAAGAAAAGAAAGACAA+GGG | - | chr6.1:10837071-10837090 | MS.gene87954:CDS | 20.0% |
| !! | GAAAAAAGAAAAGAAAAACA+AGG | - | chr6.1:10837364-10837383 | MS.gene87954:CDS | 20.0% |
| ! | AAAAGCTTGAAAAGATCAAT+GGG | - | chr6.1:10837636-10837655 | MS.gene87954:CDS | 25.0% |
| ! | GAAAAAAGAAAAGAAAGACA+AGG | - | chr6.1:10837070-10837089 | MS.gene87954:CDS | 25.0% |
| !! | TCAGATGATTCTAAAGATAT+CGG | - | chr6.1:10836534-10836553 | MS.gene87954:CDS | 25.0% |
| AAAAAAGAAGACAAGGACAA+AGG | - | chr6.1:10837554-10837573 | MS.gene87954:CDS | 30.0% | |
| AAAAAGCGAAAAGAAAGAGA+AGG | - | chr6.1:10836893-10836912 | MS.gene87954:CDS | 30.0% | |
| AAAGAAAAAGACGACAAAAG+TGG | - | chr6.1:10836621-10836640 | MS.gene87954:CDS | 30.0% | |
| AAAGAAAAAGAGAAGGATAG+TGG | - | chr6.1:10837011-10837030 | MS.gene87954:CDS | 30.0% | |
| AAGTAAGGAGAATAAAGACA+AGG | - | chr6.1:10836704-10836723 | MS.gene87954:CDS | 30.0% | |
| AGAAAAGGACAAGAAAAAGA+AGG | - | chr6.1:10836593-10836612 | MS.gene87954:CDS | 30.0% | |
| AGAAACACTTCTTGAACAAA+AGG | - | chr6.1:10837664-10837683 | MS.gene87954:CDS | 30.0% | |
| AGAGAGTAAGAAAAAGAAGA+AGG | - | chr6.1:10836983-10837002 | MS.gene87954:CDS | 30.0% | |
| CAAAAGCTTGAAAAGATCAA+TGG | - | chr6.1:10837635-10837654 | MS.gene87954:CDS | 30.0% | |
| GAAAAAAAAAGAGAAGGACA+AGG | - | chr6.1:10837274-10837293 | MS.gene87954:CDS | 30.0% | |
| GAAAACAGAGAAGAAAGAAA+AGG | - | chr6.1:10836677-10836696 | MS.gene87954:CDS | 30.0% | |
| GAAAGAAAAGGTGAAAAGTA+AGG | - | chr6.1:10836689-10836708 | MS.gene87954:CDS | 30.0% | |
| GAAAGAGAAGAAAGATGATA+AGG | - | chr6.1:10837433-10837452 | MS.gene87954:CDS | 30.0% | |
| GGATAAGAAAGAAAAAGAGA+AGG | - | chr6.1:10837004-10837023 | MS.gene87954:CDS | 30.0% | |
| GGATGAAAAGAAGAAGAAAA+AGG | - | chr6.1:10836797-10836816 | MS.gene87954:CDS | 30.0% | |
| GGATGAGAAAAAAAAAGAGA+AGG | - | chr6.1:10837268-10837287 | MS.gene87954:CDS | 30.0% | |
| ! | AAGATGAGGAAATTGATGAT+GGG | - | chr6.1:10837510-10837529 | MS.gene87954:CDS | 30.0% |
| ! | AGAGAAAAAGAAAAAGCACA+AGG | - | chr6.1:10836500-10836519 | MS.gene87954:CDS | 30.0% |
| !!! | GTTTTTTCACTTTCCTTCTT+CGG | + | chr6.1:10837314-10837333 | None:intergenic | 30.0% |
| AAAAAGGGTAAAGGTGATGA+AGG | - | chr6.1:10836747-10836766 | MS.gene87954:CDS | 35.0% | |
| AAAGAAAAAGAGAAGGACAG+TGG | - | chr6.1:10837146-10837165 | MS.gene87954:CDS | 35.0% | |
| AAGGAGAATAAAGACAAGGA+TGG | - | chr6.1:10836708-10836727 | MS.gene87954:CDS | 35.0% | |
| AGAAAAGAAAAACAAGGGTG+AGG | - | chr6.1:10837370-10837389 | MS.gene87954:CDS | 35.0% | |
| AGAAAAGAAAGACAAGGGAA+AGG | - | chr6.1:10837076-10837095 | MS.gene87954:CDS | 35.0% | |
| ATCGAAACAAAGAAGGACAA+GGG | - | chr6.1:10836834-10836853 | MS.gene87954:CDS | 35.0% | |
| CTTCAGTTCTACTTCTAACT+CGG | + | chr6.1:10836463-10836482 | None:intergenic | 35.0% | |
| GAAAAGAAAGACAAGGGAAA+GGG | - | chr6.1:10837077-10837096 | MS.gene87954:CDS | 35.0% | |
| GAAAGTGAAAAAACCGATGA+AGG | - | chr6.1:10837320-10837339 | MS.gene87954:CDS | 35.0% | |
| GAAGAGAAAGTTATCTGGAA+AGG | - | chr6.1:10837583-10837602 | MS.gene87954:CDS | 35.0% | |
| GAAGATGAGGAAATTGATGA+TGG | - | chr6.1:10837509-10837528 | MS.gene87954:CDS | 35.0% | |
| GAAGGAGAAAAAAGAAGACA+AGG | - | chr6.1:10837547-10837566 | MS.gene87954:CDS | 35.0% | |
| TCTAAAGATATCGGTGAAGA+TGG | - | chr6.1:10836543-10836562 | MS.gene87954:CDS | 35.0% | |
| TGAAGAGATCGAAACAAAGA+AGG | - | chr6.1:10836827-10836846 | MS.gene87954:CDS | 35.0% | |
| TGAGAAAGAAGGTGATGTAA+AGG | - | chr6.1:10836428-10836447 | MS.gene87954:CDS | 35.0% | |
| TGATAAAATCAAGCCGAAGA+AGG | - | chr6.1:10837298-10837317 | MS.gene87954:CDS | 35.0% | |
| TGGCGAAGAGAATAAGAAAA+AGG | - | chr6.1:10837247-10837266 | MS.gene87954:CDS | 35.0% | |
| ! | ATAAGGATGAAGTTGTTTCG+AGG | - | chr6.1:10837450-10837469 | MS.gene87954:CDS | 35.0% |
| ! | GAAGGATAAGAAAAAGCACA+AGG | - | chr6.1:10836911-10836930 | MS.gene87954:CDS | 35.0% |
| ! | GATGGTAGTGAGAATAAACA+CGG | - | chr6.1:10836561-10836580 | MS.gene87954:CDS | 35.0% |
| ! | TAAGGATGAAGTTGTTTCGA+GGG | - | chr6.1:10837451-10837470 | MS.gene87954:CDS | 35.0% |
| AAAGAAGACAAGGACAAAGG+TGG | - | chr6.1:10837557-10837576 | MS.gene87954:CDS | 40.0% | |
| AAAGGTGATGAAGGTGAAGA+CGG | - | chr6.1:10836756-10836775 | MS.gene87954:CDS | 40.0% | |
| AAGAAGACAAGGACAAAGGT+GGG | - | chr6.1:10837558-10837577 | MS.gene87954:CDS | 40.0% | |
| AAGACTGAGGATGAGAAAGA+AGG | - | chr6.1:10836417-10836436 | MS.gene87954:CDS | 40.0% | |
| AGGAGAGGATAGTGAAAAGA+AGG | - | chr6.1:10836869-10836888 | MS.gene87954:CDS | 40.0% | |
| AGTGGTTGCTGAGGATAAAA+AGG | - | chr6.1:10836731-10836750 | MS.gene87954:CDS | 40.0% | |
| ATACGAGAAGCAGAAGATGA+AGG | - | chr6.1:10837704-10837723 | MS.gene87954:CDS | 40.0% | |
| CGAGTTAGAAGTAGAACTGA+AGG | - | chr6.1:10836461-10836480 | MS.gene87954:CDS | 40.0% | |
| CGGTAAGAAGGAGAAAAAGA+AGG | - | chr6.1:10836776-10836795 | MS.gene87954:CDS | 40.0% | |
| CTTCTTCTCTTCTCCATCAT+CGG | + | chr6.1:10837042-10837061 | None:intergenic | 40.0% | |
| GAATAAAGACAAGGATGGAG+TGG | - | chr6.1:10836713-10836732 | MS.gene87954:CDS | 40.0% | |
| GATCGAAACAAAGAAGGACA+AGG | - | chr6.1:10836833-10836852 | MS.gene87954:CDS | 40.0% | |
| GCTGAGGATAAAAAGGGTAA+AGG | - | chr6.1:10836738-10836757 | MS.gene87954:CDS | 40.0% | |
| GGGAAGAAGAGAAAGTTATC+TGG | - | chr6.1:10837578-10837597 | MS.gene87954:CDS | 40.0% | |
| GTGGTTGCTGAGGATAAAAA+GGG | - | chr6.1:10836732-10836751 | MS.gene87954:CDS | 40.0% | |
| GTTCTTCTCTTCTCCATCAT+CGG | + | chr6.1:10837177-10837196 | None:intergenic | 40.0% | |
| TCGAAACAAAGAAGGACAAG+GGG | - | chr6.1:10836835-10836854 | MS.gene87954:CDS | 40.0% | |
| TGAGAATAAACACGGTGACA+AGG | - | chr6.1:10836569-10836588 | MS.gene87954:CDS | 40.0% | |
| ! | AAAGCACAAGGATGATGATG+TGG | - | chr6.1:10836923-10836942 | MS.gene87954:CDS | 40.0% |
| ! | CTCTCTAAAGATCAAGACTG+AGG | - | chr6.1:10836404-10836423 | MS.gene87954:CDS | 40.0% |
| ! | TGATGATGTGGTGAAATCGA+CGG | - | chr6.1:10836935-10836954 | MS.gene87954:CDS | 40.0% |
| !! | GATAGTGGAAAAACCGATGA+TGG | - | chr6.1:10837026-10837045 | MS.gene87954:CDS | 40.0% |
| !! | TGAGGAAATTGATGATGGGA+AGG | - | chr6.1:10837514-10837533 | MS.gene87954:CDS | 40.0% |
| AAACAAGGGTGAGGAAGAAG+AGG | - | chr6.1:10837379-10837398 | MS.gene87954:CDS | 45.0% | |
| AACAAGGGTGAGGAAGAAGA+GGG | - | chr6.1:10837380-10837399 | MS.gene87954:CDS | 45.0% | |
| ACAAAAGACCGAGGAGAAAG+CGG | - | chr6.1:10837484-10837503 | MS.gene87954:CDS | 45.0% | |
| ACACGGTGACAAGGAAGAAA+AGG | - | chr6.1:10836578-10836597 | MS.gene87954:CDS | 45.0% | |
| AGATGAAGGTTATGTCGTCG+TGG | - | chr6.1:10837718-10837737 | MS.gene87954:CDS | 45.0% | |
| ATCTTCTTCCGCTTTCTCCT+CGG | + | chr6.1:10837495-10837514 | None:intergenic | 45.0% | |
| CTTCTTCGCTTCTCCTTCAT+CGG | + | chr6.1:10837336-10837355 | None:intergenic | 45.0% | |
| GACAAGGGGAAAGAAGATGT+AGG | - | chr6.1:10836849-10836868 | MS.gene87954:CDS | 45.0% | |
| GACAGTGGAAAAACCGATGA+TGG | - | chr6.1:10837161-10837180 | MS.gene87954:CDS | 45.0% | |
| GATGATGTGGTGAAATCGAC+GGG | - | chr6.1:10836936-10836955 | MS.gene87954:CDS | 45.0% | |
| TGAAGGTGAAGACGGTAAGA+AGG | - | chr6.1:10836764-10836783 | MS.gene87954:CDS | 45.0% | |
| TGGGAAGGAAGTGAAAGAGA+AGG | - | chr6.1:10837529-10837548 | MS.gene87954:CDS | 45.0% | |
| ! | GAAGTTGTTTCGAGGGAGAT+AGG | - | chr6.1:10837458-10837477 | MS.gene87954:CDS | 45.0% |
| !! | CGATGATGGAGAAGAGAAGA+AGG | - | chr6.1:10837040-10837059 | MS.gene87954:CDS | 45.0% |
| !! | CTTCAGCTTGCTGACATCAT+TGG | + | chr6.1:10837615-10837634 | None:intergenic | 45.0% |
| AGACAAGGGAAAGGGAGATG+AGG | - | chr6.1:10837220-10837239 | MS.gene87954:CDS | 50.0% | |
| AGGTTATGTCGTCGTGGAGA+AGG | - | chr6.1:10837724-10837743 | MS.gene87954:CDS | 50.0% | |
| CGATGAAGGAGAAGCGAAGA+AGG | - | chr6.1:10837334-10837353 | MS.gene87954:CDS | 50.0% | |
| GATAGGTGGACAAAAGACCG+AGG | - | chr6.1:10837475-10837494 | MS.gene87954:CDS | 50.0% | |
| GGAAAGGGAGAAGAGGATGA+CGG | - | chr6.1:10836957-10836976 | MS.gene87954:CDS | 50.0% | |
| GGAAAGGGAGATGAGGATGA+TGG | - | chr6.1:10837227-10837246 | MS.gene87954:CDS | 50.0% | |
| GGAGAAAGCGGAAGAAGATG+AGG | - | chr6.1:10837496-10837515 | MS.gene87954:CDS | 50.0% | |
| GGGGAAAGAAGATGTAGGAG+AGG | - | chr6.1:10836854-10836873 | MS.gene87954:CDS | 50.0% | |
| GTGGTGAAATCGACGGGAAA+GGG | - | chr6.1:10836942-10836961 | MS.gene87954:CDS | 50.0% | |
| TGTGGTGAAATCGACGGGAA+AGG | - | chr6.1:10836941-10836960 | MS.gene87954:CDS | 50.0% | |
| ! | GTTGTTTCGAGGGAGATAGG+TGG | - | chr6.1:10837461-10837480 | MS.gene87954:CDS | 50.0% |
| AGACAAGGGAAAGGGAGACG+AGG | - | chr6.1:10837085-10837104 | MS.gene87954:CDS | 55.0% | |
| ATCGACGGGAAAGGGAGAAG+AGG | - | chr6.1:10836950-10836969 | MS.gene87954:CDS | 55.0% | |
| CAAGGATGGAGTGGTTGCTG+AGG | - | chr6.1:10836722-10836741 | MS.gene87954:CDS | 55.0% | |
| GGAAAGGGAGACGAGGATGA+CGG | - | chr6.1:10837092-10837111 | MS.gene87954:CDS | 55.0% | |
| CGTGGAGAAGGCCAAGGATG+CGG | - | chr6.1:10837736-10837755 | MS.gene87954:CDS | 60.0% | |
| TGTCGTCGTGGAGAAGGCCA+AGG | - | chr6.1:10837730-10837749 | MS.gene87954:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 10836384 | 10837766 | 10836384 | ID=MS.gene87954 |
| chr6.1 | mRNA | 10836384 | 10837766 | 10836384 | ID=MS.gene87954.t1;Parent=MS.gene87954 |
| chr6.1 | exon | 10836384 | 10837766 | 10836384 | ID=MS.gene87954.t1.exon1;Parent=MS.gene87954.t1 |
| chr6.1 | CDS | 10836384 | 10837766 | 10836384 | ID=cds.MS.gene87954.t1;Parent=MS.gene87954.t1 |
| Gene Sequence |
| Protein sequence |
