Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87795.t1 | XP_003623468.1 | 99 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.50E-48 | 201.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87795.t1 | G7KV21 | 99.0 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.1e-48 | 201.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene87795 | 0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene87795 | 0.823964 | 1.04E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene87795 | 0.840183 | 1.01E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene87795 | 0.832762 | 7.86E-56 | -1.69E-46 |
| MS.gene049680 | MS.gene87795 | 0.803136 | 4.03E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene87795 | 0.810975 | 8.82E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene87795 | 0.819696 | 1.01E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene87795 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene87795 | 0.84416 | 8.98E-59 | -1.69E-46 |
| MS.gene051328 | MS.gene87795 | 0.8211 | 4.83E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene87795 | 0.82034 | 7.22E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene87795 | 0.811065 | 8.44E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene87795 | 0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene87795 | 0.835133 | 2.00E-56 | -1.69E-46 |
| MS.gene051699 | MS.gene87795 | 0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene87795 | 0.80746 | 5.00E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene87795 | 0.843217 | 1.60E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene87795 | 0.840406 | 8.86E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene87795 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene87795 | 0.825683 | 4.10E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene87795 | 0.820326 | 7.28E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene87795 | 0.830139 | 3.48E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene87795 | 0.819386 | 1.19E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene87795 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene87795 | 0.85634 | 3.44E-62 | -1.69E-46 |
| MS.gene053008 | MS.gene87795 | 0.810686 | 1.02E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene87795 | 0.831841 | 1.33E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene87795 | 0.80224 | 6.16E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene87795 | 0.819465 | 1.15E-52 | -1.69E-46 |
| MS.gene053272 | MS.gene87795 | -0.802506 | 5.43E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene87795 | 0.809995 | 1.44E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene87795 | 0.822207 | 2.68E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene87795 | 0.802908 | 4.49E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene87795 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene87795 | 0.829971 | 3.82E-55 | -1.69E-46 |
| MS.gene05517 | MS.gene87795 | 0.845347 | 4.30E-59 | -1.69E-46 |
| MS.gene055222 | MS.gene87795 | 0.816816 | 4.55E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene87795 | 0.808422 | 3.12E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene87795 | 0.802514 | 5.41E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene87795 | 0.828023 | 1.13E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene87795 | 0.841288 | 5.20E-58 | -1.69E-46 |
| MS.gene056091 | MS.gene87795 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene87795 | 0.803785 | 2.95E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene87795 | 0.839309 | 1.71E-57 | -1.69E-46 |
| MS.gene056699 | MS.gene87795 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene87795 | 0.820726 | 5.89E-53 | -1.69E-46 |
| MS.gene05689 | MS.gene87795 | 0.819815 | 9.53E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene87795 | 0.845579 | 3.72E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene87795 | 0.825761 | 3.93E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene87795 | 0.845546 | 3.80E-59 | -1.69E-46 |
| MS.gene057598 | MS.gene87795 | 0.801471 | 8.87E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene87795 | 0.828114 | 1.08E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene87795 | 0.800478 | 1.41E-48 | -1.69E-46 |
| MS.gene057890 | MS.gene87795 | -0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene87795 | -0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene87795 | 0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene87795 | 0.8068 | 6.90E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene87795 | 0.800701 | 1.27E-48 | -1.69E-46 |
| MS.gene058088 | MS.gene87795 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene058126 | MS.gene87795 | 0.81586 | 7.45E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene87795 | 0.806552 | 7.78E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene87795 | 0.822022 | 2.96E-53 | -1.69E-46 |
| MS.gene058549 | MS.gene87795 | 0.800988 | 1.11E-48 | -1.69E-46 |
| MS.gene058781 | MS.gene87795 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene87795 | 0.831128 | 1.99E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene87795 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene87795 | 0.865685 | 4.94E-65 | -1.69E-46 |
| MS.gene05952 | MS.gene87795 | 0.807301 | 5.40E-50 | -1.69E-46 |
| MS.gene05953 | MS.gene87795 | 0.804776 | 1.84E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene87795 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene87795 | 0.832944 | 7.08E-56 | -1.69E-46 |
| MS.gene059830 | MS.gene87795 | 0.812102 | 5.02E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene87795 | 0.816674 | 4.90E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene87795 | -0.834258 | 3.33E-56 | -1.69E-46 |
| MS.gene059901 | MS.gene87795 | -0.831525 | 1.59E-55 | -1.69E-46 |
| MS.gene059935 | MS.gene87795 | 0.831762 | 1.39E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene87795 | 0.80576 | 1.14E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene87795 | 0.832259 | 1.05E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene87795 | 0.868312 | 7.17E-66 | -1.69E-46 |
| MS.gene060521 | MS.gene87795 | 0.818944 | 1.50E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene87795 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene87795 | 0.81153 | 6.69E-51 | -1.69E-46 |
| MS.gene060917 | MS.gene87795 | 0.812394 | 4.33E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene87795 | 0.834602 | 2.73E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene87795 | 0.826577 | 2.51E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene87795 | 0.815878 | 7.38E-52 | -1.69E-46 |
| MS.gene061160 | MS.gene87795 | 0.803319 | 3.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87795.t1 | MTR_7g071210 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.66e-68 | 200 |
| MS.gene87795.t1 | MTR_3g072010 | 63.095 | 84 | 31 | 0 | 12 | 95 | 66 | 149 | 4.30e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87795.t1 | AT2G38450 | 80.952 | 84 | 15 | 1 | 12 | 94 | 53 | 136 | 4.31e-46 | 145 |
| MS.gene87795.t1 | AT5G05360 | 66.667 | 90 | 30 | 0 | 6 | 95 | 71 | 160 | 1.72e-41 | 134 |
| MS.gene87795.t1 | AT5G05360 | 64.634 | 82 | 29 | 0 | 6 | 87 | 71 | 152 | 5.85e-36 | 119 |
| MS.gene87795.t1 | AT2G38450 | 76.471 | 51 | 11 | 1 | 12 | 61 | 53 | 103 | 2.07e-23 | 87.4 |
Find 24 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTGAAACGTTGGTTTA+AGG | 0.206492 | 7.1:+30977812 | MS.gene87795:CDS |
| GTTGGTTTAAGGATACTCTT+AGG | 0.251388 | 7.1:+30977823 | MS.gene87795:CDS |
| TGATGTTAATATGCAGATTT+TGG | 0.257808 | 7.1:+30977860 | MS.gene87795:CDS |
| GGATATATGGAGAGCAGTAT+AGG | 0.337976 | 7.1:+30977744 | None:intergenic |
| CGAGGGTTAGGTCTTCAGTT+TGG | 0.387633 | 7.1:+30980285 | MS.gene87795:CDS |
| GATATATGGAGAGCAGTATA+GGG | 0.394996 | 7.1:+30977745 | None:intergenic |
| TGACAAAAGCATCGAGGGTT+AGG | 0.410197 | 7.1:+30980273 | MS.gene87795:CDS |
| TCTGCCACAACCCCAGATAA+AGG | 0.418971 | 7.1:-30977789 | None:intergenic |
| AGGTCTTCAGTTTGGAAAGT+TGG | 0.443829 | 7.1:+30980293 | MS.gene87795:CDS |
| GTTGGTCAGATGTATTATAG+TGG | 0.448023 | 7.1:+30977882 | MS.gene87795:CDS |
| GAGAGCAGTATAGGGAAAGA+TGG | 0.460620 | 7.1:+30977753 | MS.gene87795:CDS |
| TTGGTTTAAGGATACTCTTA+GGG | 0.499307 | 7.1:+30977824 | MS.gene87795:CDS |
| GTATAGGGAAAGATGGAAAC+GGG | 0.507255 | 7.1:+30977760 | MS.gene87795:CDS |
| ACTCTTAGGGAGGCTAAAGC+TGG | 0.533054 | 7.1:+30977837 | MS.gene87795:CDS |
| CAGATGTATTATAGTGGCTA+TGG | 0.541971 | 7.1:+30977888 | MS.gene87795:CDS |
| AAAGTTGGAGATAAGCGTCC+AGG | 0.548549 | 7.1:+30980308 | MS.gene87795:CDS |
| TGGGAATGAAGGGAAAACTT+TGG | 0.550885 | 7.1:+30980249 | MS.gene87795:intron |
| AGTATAGGGAAAGATGGAAA+CGG | 0.551781 | 7.1:+30977759 | MS.gene87795:CDS |
| TGGCAGATTGTGTGAAACGT+TGG | 0.602973 | 7.1:+30977805 | MS.gene87795:CDS |
| GTTTAAGGATACTCTTAGGG+AGG | 0.610668 | 7.1:+30977827 | MS.gene87795:CDS |
| TTGGCTGACAAAAGCATCGA+GGG | 0.617055 | 7.1:+30980268 | MS.gene87795:CDS |
| TGTTGCAAAAGATGCTCAGA+AGG | 0.654531 | 7.1:+30977911 | MS.gene87795:CDS |
| TTTGGCTGACAAAAGCATCG+AGG | 0.704862 | 7.1:+30980267 | MS.gene87795:CDS |
| TGACTCTGATGAATCAAACG+AGG | 0.712793 | 7.1:+30980437 | MS.gene87795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTAAGTAAAAAATAT+GGG | + | chr7.1:30979445-30979464 | MS.gene87795:intron | 10.0% |
| !!! | TATTTTAAGTAAAAAATATG+GGG | + | chr7.1:30979446-30979465 | MS.gene87795:intron | 10.0% |
| !!! | TATTTTTAATGTTATCATTA+AGG | - | chr7.1:30979406-30979425 | None:intergenic | 10.0% |
| !! | AGTTTCTATTATGAAATATA+TGG | + | chr7.1:30980085-30980104 | MS.gene87795:intron | 15.0% |
| !! | GAGATTAATATTATTTGTTT+GGG | + | chr7.1:30980230-30980249 | MS.gene87795:intron | 15.0% |
| !! | GTAGAAAATGATAATAAATT+TGG | + | chr7.1:30978590-30978609 | MS.gene87795:intron | 15.0% |
| !! | TATTATGAAATATATGGTTA+TGG | + | chr7.1:30980091-30980110 | MS.gene87795:intron | 15.0% |
| !!! | AAACACGATTTTTTTTTAAA+AGG | - | chr7.1:30978887-30978906 | None:intergenic | 15.0% |
| !!! | ACATGATCATTTTTAAAAAA+AGG | - | chr7.1:30979838-30979857 | None:intergenic | 15.0% |
| !!! | CGTATTTTAAGTAAAAAATA+TGG | + | chr7.1:30979444-30979463 | MS.gene87795:intron | 15.0% |
| !!! | TAACTTTTAATTTATGTTTC+TGG | + | chr7.1:30979580-30979599 | MS.gene87795:intron | 15.0% |
| !! | ACCACTATTATATATCATTT+CGG | + | chr7.1:30979255-30979274 | MS.gene87795:intron | 20.0% |
| !! | ATGTCTTAAATATGAAGTAT+TGG | + | chr7.1:30978679-30978698 | MS.gene87795:intron | 20.0% |
| !! | ATTAAATTCACATAAATGTG+TGG | - | chr7.1:30979871-30979890 | None:intergenic | 20.0% |
| !! | ATTCATTTCTTTATTCACTT+TGG | - | chr7.1:30978911-30978930 | None:intergenic | 20.0% |
| !! | CTGATATAGAAATTAAAACA+AGG | - | chr7.1:30980051-30980070 | None:intergenic | 20.0% |
| !! | GGAGATTAATATTATTTGTT+TGG | + | chr7.1:30980229-30980248 | MS.gene87795:intron | 20.0% |
| !! | GTAGAAAGTGATAATAAATT+TGG | + | chr7.1:30978189-30978208 | MS.gene87795:intron | 20.0% |
| !! | TAAAGAAATGAATAAAACCT+AGG | + | chr7.1:30978124-30978143 | MS.gene87795:intron | 20.0% |
| !! | TATTTGAATATATTGAGTCA+TGG | + | chr7.1:30980131-30980150 | MS.gene87795:intron | 20.0% |
| !! | TATTTGATTGTTTGTTTGTT+TGG | + | chr7.1:30978007-30978026 | MS.gene87795:intron | 20.0% |
| !!! | TTTAATTTCTATATCAGAAG+TGG | + | chr7.1:30980054-30980073 | MS.gene87795:intron | 20.0% |
| !!! | TTTTCTTGTTTTCATGTTTT+TGG | + | chr7.1:30977946-30977965 | MS.gene87795:intron | 20.0% |
| !!! | TTTTTCTCATATTGGATTTT+AGG | + | chr7.1:30979722-30979741 | MS.gene87795:intron | 20.0% |
| ! | ATGACAAATTGACAATAGTT+AGG | + | chr7.1:30978083-30978102 | MS.gene87795:intron | 25.0% |
| ! | ATTATTTGTTTGGGAATGAA+GGG | + | chr7.1:30980239-30980258 | MS.gene87795:intron | 25.0% |
| ! | ATTCATTTCTTTACTCACTT+TGG | - | chr7.1:30978519-30978538 | None:intergenic | 25.0% |
| ! | CCACTATTATATATCATTTC+GGG | + | chr7.1:30979256-30979275 | MS.gene87795:intron | 25.0% |
| ! | GATATATAATAGTGGTTTAG+CGG | - | chr7.1:30979251-30979270 | None:intergenic | 25.0% |
| ! | TATTATTTGTTTGGGAATGA+AGG | + | chr7.1:30980238-30980257 | MS.gene87795:intron | 25.0% |
| ! | TGTGAAGAATAGAAAAACAT+TGG | + | chr7.1:30979917-30979936 | MS.gene87795:intron | 25.0% |
| ! | TGTTATTAATCAACTTGCAT+TGG | + | chr7.1:30977983-30978002 | MS.gene87795:intron | 25.0% |
| ! | TTATATATCATTTCGGGATT+TGG | + | chr7.1:30979262-30979281 | MS.gene87795:intron | 25.0% |
| !! | ATCTCTTAAATCTGAAGTAT+CGG | + | chr7.1:30979078-30979097 | MS.gene87795:intron | 25.0% |
| !! | TGATGTTAATATGCAGATTT+TGG | + | chr7.1:30977860-30977879 | MS.gene87795:CDS | 25.0% |
| !! | TTTTCCTTTGTAAGTTAATG+TGG | + | chr7.1:30980366-30980385 | MS.gene87795:intron | 25.0% |
| !!! | CATTTTTAAAAAAAGGTCCA+CGG | - | chr7.1:30979831-30979850 | None:intergenic | 25.0% |
| !!! | CTATCTACTTTTTCTCATAT+TGG | + | chr7.1:30979714-30979733 | MS.gene87795:intron | 25.0% |
| !!! | TGTTAGCATTGATAAGTATT+AGG | - | chr7.1:30979139-30979158 | None:intergenic | 25.0% |
| !!! | TTGTTTGCTGCATTTTTATT+AGG | + | chr7.1:30980396-30980415 | MS.gene87795:intron | 25.0% |
| AACATTGGAAGTTCTATTGT+TGG | + | chr7.1:30979932-30979951 | MS.gene87795:intron | 30.0% | |
| AGAAAAAGTAGATAGCACAA+CGG | - | chr7.1:30979709-30979728 | None:intergenic | 30.0% | |
| CAATAGTTAGGAGAATAAGT+TGG | + | chr7.1:30978095-30978114 | MS.gene87795:intron | 30.0% | |
| CCCGAAATGATATATAATAG+TGG | - | chr7.1:30979259-30979278 | None:intergenic | 30.0% | |
| TATGAAGTATGAACAATGAG+TGG | + | chr7.1:30980160-30980179 | MS.gene87795:intron | 30.0% | |
| TATTCTTCACATATACAGAC+AGG | - | chr7.1:30979908-30979927 | None:intergenic | 30.0% | |
| TATTTATTTCAACCGCTTTG+TGG | + | chr7.1:30979669-30979688 | MS.gene87795:intron | 30.0% | |
| TGATTGTTTGTTTGTTTGGT+TGG | + | chr7.1:30978011-30978030 | MS.gene87795:intron | 30.0% | |
| TTAGCCACATTAACTTACAA+AGG | - | chr7.1:30980373-30980392 | None:intergenic | 30.0% | |
| TTGGTTTAAGGATACTCTTA+GGG | + | chr7.1:30977824-30977843 | MS.gene87795:CDS | 30.0% | |
| ! | CTGCGTTGTTATTAAATAAC+TGG | + | chr7.1:30979218-30979237 | MS.gene87795:intron | 30.0% |
| ! | GTGTCTTAAATCTGAAGTAT+TGG | + | chr7.1:30978274-30978293 | MS.gene87795:intron | 30.0% |
| ! | TCACATAAATGTGTGGATTT+TGG | - | chr7.1:30979864-30979883 | None:intergenic | 30.0% |
| !! | GCTAACAATGTTTTAAGTCA+CGG | + | chr7.1:30978348-30978367 | MS.gene87795:intron | 30.0% |
| !! | GTTAATATGCAGATTTTGGT+TGG | + | chr7.1:30977864-30977883 | MS.gene87795:CDS | 30.0% |
| !! | TGTTTGTCTGTCTTTTGTTT+TGG | + | chr7.1:30980207-30980226 | MS.gene87795:intron | 30.0% |
| !!! | AGCAGTGATTTTTTGCAAAT+CGG | + | chr7.1:30979331-30979350 | MS.gene87795:intron | 30.0% |
| !!! | GTTGGTTGGTGTTAATTTTT+CGG | + | chr7.1:30978029-30978048 | MS.gene87795:intron | 30.0% |
| !!! | GTTTGTCTGTCTTTTGTTTT+GGG | + | chr7.1:30980208-30980227 | MS.gene87795:intron | 30.0% |
| !!! | TTGGTTGGTGTTAATTTTTC+GGG | + | chr7.1:30978030-30978049 | MS.gene87795:intron | 30.0% |
| AGTATAGGGAAAGATGGAAA+CGG | + | chr7.1:30977759-30977778 | MS.gene87795:CDS | 35.0% | |
| ATAAGCTGCTAAAACAGTAG+AGG | - | chr7.1:30980338-30980357 | None:intergenic | 35.0% | |
| ATAGCACAACGGAAAAATAG+AGG | - | chr7.1:30979698-30979717 | None:intergenic | 35.0% | |
| ATTGGAAGTTCTATTGTTGG+TGG | + | chr7.1:30979935-30979954 | MS.gene87795:intron | 35.0% | |
| CAGATGTATTATAGTGGCTA+TGG | + | chr7.1:30977888-30977907 | MS.gene87795:CDS | 35.0% | |
| CTTATATAACCCCTAAACCT+AGG | + | chr7.1:30979470-30979489 | MS.gene87795:intron | 35.0% | |
| GTTGGTCAGATGTATTATAG+TGG | + | chr7.1:30977882-30977901 | MS.gene87795:CDS | 35.0% | |
| TAAAACAGTAGAGGTTTACC+TGG | - | chr7.1:30980329-30980348 | None:intergenic | 35.0% | |
| TATGAAGTGAAGAGAGAAGA+AGG | - | chr7.1:30979528-30979547 | None:intergenic | 35.0% | |
| TGTTTGTTTGTTTGGTTGGT+TGG | + | chr7.1:30978015-30978034 | MS.gene87795:intron | 35.0% | |
| ! | AGCGGTTATTGATTGCATAT+CGG | + | chr7.1:30979358-30979377 | MS.gene87795:intron | 35.0% |
| ! | GCTAACAACGTTTTATGTCA+CGG | + | chr7.1:30979152-30979171 | MS.gene87795:intron | 35.0% |
| ! | GTTGGTTTAAGGATACTCTT+AGG | + | chr7.1:30977823-30977842 | MS.gene87795:CDS | 35.0% |
| ! | TTTTTGCAAATCGGCTATAG+CGG | + | chr7.1:30979340-30979359 | MS.gene87795:intron | 35.0% |
| !! | TTGTGTGAAACGTTGGTTTA+AGG | + | chr7.1:30977812-30977831 | MS.gene87795:CDS | 35.0% |
| AAATAGAGGAAGCCACAAAG+CGG | - | chr7.1:30979684-30979703 | None:intergenic | 40.0% | |
| AACTGATATGGCCTCAATTG+CGG | + | chr7.1:30978405-30978424 | MS.gene87795:intron | 40.0% | |
| AAGATTCACGACTGCAATCT+AGG | - | chr7.1:30978474-30978493 | None:intergenic | 40.0% | |
| AAGGTTCACGACTGAAATCT+AGG | - | chr7.1:30978868-30978887 | None:intergenic | 40.0% | |
| AGGTCTTCAGTTTGGAAAGT+TGG | + | chr7.1:30980293-30980312 | MS.gene87795:CDS | 40.0% | |
| ATGAGAGGTTACCTAGGTTT+AGG | - | chr7.1:30979484-30979503 | None:intergenic | 40.0% | |
| CATGTTGCAATGCTTGATTG+CGG | + | chr7.1:30979176-30979195 | MS.gene87795:intron | 40.0% | |
| GCGAAGAATTGCAACTGATA+TGG | + | chr7.1:30978393-30978412 | MS.gene87795:intron | 40.0% | |
| GCTGGTGTTTGTATCTATGT+CGG | - | chr7.1:30978155-30978174 | None:intergenic | 40.0% | |
| GTATAGGGAAAGATGGAAAC+GGG | + | chr7.1:30977760-30977779 | MS.gene87795:CDS | 40.0% | |
| GTCGTAGTCAAATCGCAAAT+CGG | - | chr7.1:30979305-30979324 | None:intergenic | 40.0% | |
| GTGTTATCAATAGCGAATCG+CGG | - | chr7.1:30979762-30979781 | None:intergenic | 40.0% | |
| GTTTAAGGATACTCTTAGGG+AGG | + | chr7.1:30977827-30977846 | MS.gene87795:CDS | 40.0% | |
| TATTGCTTAGATTGTAGCCG+TGG | + | chr7.1:30979811-30979830 | MS.gene87795:intron | 40.0% | |
| TGAACAATGAGTGGAGTCTT+TGG | + | chr7.1:30980169-30980188 | MS.gene87795:intron | 40.0% | |
| TGACTCTGATGAATCAAACG+AGG | + | chr7.1:30980437-30980456 | MS.gene87795:CDS | 40.0% | |
| TGAGAGGTTACCTAGGTTTA+GGG | - | chr7.1:30979483-30979502 | None:intergenic | 40.0% | |
| TGGGAATGAAGGGAAAACTT+TGG | + | chr7.1:30980249-30980268 | MS.gene87795:intron | 40.0% | |
| TGTTGCAAAAGATGCTCAGA+AGG | + | chr7.1:30977911-30977930 | MS.gene87795:CDS | 40.0% | |
| TTAGTGATGAGAGGTTACCT+AGG | - | chr7.1:30979490-30979509 | None:intergenic | 40.0% | |
| ! | TATTGATAACACTGTCGTGG+AGG | + | chr7.1:30979770-30979789 | MS.gene87795:intron | 40.0% |
| !! | TGTTTGTGTTGGTTCTTCCT+AGG | - | chr7.1:30978938-30978957 | None:intergenic | 40.0% |
| !! | TTTTCCTTTATCTGGGGTTG+TGG | + | chr7.1:30977785-30977804 | MS.gene87795:CDS | 40.0% |
| AAAGTTGGAGATAAGCGTCC+AGG | + | chr7.1:30980308-30980327 | MS.gene87795:CDS | 45.0% | |
| AGAAGGGGTTTAGTGATGAG+AGG | - | chr7.1:30979499-30979518 | None:intergenic | 45.0% | |
| ATGCTTCGATGACCGCAATT+GGG | - | chr7.1:30978825-30978844 | None:intergenic | 45.0% | |
| CTTTCTACGTGTCAGTGTCA+TGG | - | chr7.1:30978177-30978196 | None:intergenic | 45.0% | |
| GAGAGCAGTATAGGGAAAGA+TGG | + | chr7.1:30977753-30977772 | MS.gene87795:CDS | 45.0% | |
| GAGAGGTTACCTAGGTTTAG+GGG | - | chr7.1:30979482-30979501 | None:intergenic | 45.0% | |
| GTCATGTCTGGTGTTTGTGT+CGG | - | chr7.1:30978557-30978576 | None:intergenic | 45.0% | |
| GTCATGTCTGGTGTTTGTGT+TGG | - | chr7.1:30978557-30978576 | None:intergenic | 45.0% | |
| TAGCGAATCGCGGAAAATAG+CGG | - | chr7.1:30979752-30979771 | None:intergenic | 45.0% | |
| TATGCTTCGATGACCGCAAT+TGG | - | chr7.1:30978826-30978845 | None:intergenic | 45.0% | |
| TCTCATCACTAAACCCCTTC+TGG | + | chr7.1:30979498-30979517 | MS.gene87795:intron | 45.0% | |
| TGGCAGATTGTGTGAAACGT+TGG | + | chr7.1:30977805-30977824 | MS.gene87795:CDS | 45.0% | |
| ! | AACGGGCGTTTTCCTTTATC+TGG | + | chr7.1:30977777-30977796 | MS.gene87795:CDS | 45.0% |
| ! | ACGGGCGTTTTCCTTTATCT+GGG | + | chr7.1:30977778-30977797 | MS.gene87795:CDS | 45.0% |
| ! | CGCTATTGATAACACTGTCG+TGG | + | chr7.1:30979767-30979786 | MS.gene87795:intron | 45.0% |
| ! | TATCTATGTCGGTGCTTCCT+AGG | - | chr7.1:30978144-30978163 | None:intergenic | 45.0% |
| !! | TCGCAAATCGGCTTTTGTCA+CGG | - | chr7.1:30979293-30979312 | None:intergenic | 45.0% |
| !! | TGACAAAAGCATCGAGGGTT+AGG | + | chr7.1:30980273-30980292 | MS.gene87795:CDS | 45.0% |
| !! | TGTTTGTGTCGGTTCTTCCT+AGG | - | chr7.1:30978546-30978565 | None:intergenic | 45.0% |
| !! | TTGGCTGACAAAAGCATCGA+GGG | + | chr7.1:30980268-30980287 | MS.gene87795:CDS | 45.0% |
| !! | TTTGGCTGACAAAAGCATCG+AGG | + | chr7.1:30980267-30980286 | MS.gene87795:CDS | 45.0% |
| ACTCTTAGGGAGGCTAAAGC+TGG | + | chr7.1:30977837-30977856 | MS.gene87795:CDS | 50.0% | |
| AGAAGAAGGAGAGCCAGAAG+GGG | - | chr7.1:30979514-30979533 | None:intergenic | 50.0% | |
| AGAGAAGAAGGAGAGCCAGA+AGG | - | chr7.1:30979516-30979535 | None:intergenic | 50.0% | |
| AGCGAATCGCGGAAAATAGC+GGG | - | chr7.1:30979751-30979770 | None:intergenic | 50.0% | |
| CGAGGGTTAGGTCTTCAGTT+TGG | + | chr7.1:30980285-30980304 | MS.gene87795:CDS | 50.0% | |
| GAGAAGAAGGAGAGCCAGAA+GGG | - | chr7.1:30979515-30979534 | None:intergenic | 50.0% | |
| GCGAAGAATTGCAGCTGACA+TGG | + | chr7.1:30978798-30978817 | MS.gene87795:intron | 50.0% | |
| TCGCAACACAACCGCAATTG+AGG | - | chr7.1:30978419-30978438 | None:intergenic | 50.0% | |
| TCTGCCACAACCCCAGATAA+AGG | - | chr7.1:30977792-30977811 | None:intergenic | 50.0% | |
| TGCTTCGATGACCGCAATTG+GGG | - | chr7.1:30978824-30978843 | None:intergenic | 50.0% | |
| ! | CAATACCAAGCATCGCAACG+TGG | - | chr7.1:30978779-30978798 | None:intergenic | 50.0% |
| ! | CAATACCGAGCATCGCAACA+TGG | - | chr7.1:30978374-30978393 | None:intergenic | 50.0% |
| ! | CGGGCGTTTTCCTTTATCTG+GGG | + | chr7.1:30977779-30977798 | MS.gene87795:CDS | 50.0% |
| AGCTGACATGGCCCCAATTG+CGG | + | chr7.1:30978810-30978829 | MS.gene87795:intron | 55.0% | |
| CTACGTGTCAGTGTCATGGC+TGG | - | chr7.1:30978173-30978192 | None:intergenic | 55.0% | |
| TGTCAGCGTCGTGTCATGTC+TGG | - | chr7.1:30978569-30978588 | None:intergenic | 55.0% | |
| TTGCGGTTGTGTTGCGATCG+TGG | + | chr7.1:30979193-30979212 | MS.gene87795:intron | 55.0% | |
| CACGGCCATGTTGCGATGCT+CGG | + | chr7.1:30978366-30978385 | MS.gene87795:intron | 60.0% | |
| CACGGCCACGTTGCGATGCT+TGG | + | chr7.1:30978771-30978790 | MS.gene87795:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 30977750 | 30980467 | 30977750 | ID=MS.gene87795 |
| chr7.1 | mRNA | 30977750 | 30980467 | 30977750 | ID=MS.gene87795.t1;Parent=MS.gene87795 |
| chr7.1 | exon | 30977750 | 30977932 | 30977750 | ID=MS.gene87795.t1.exon1;Parent=MS.gene87795.t1 |
| chr7.1 | CDS | 30977750 | 30977932 | 30977750 | ID=cds.MS.gene87795.t1;Parent=MS.gene87795.t1 |
| chr7.1 | exon | 30980260 | 30980329 | 30980260 | ID=MS.gene87795.t1.exon2;Parent=MS.gene87795.t1 |
| chr7.1 | CDS | 30980260 | 30980329 | 30980260 | ID=cds.MS.gene87795.t1;Parent=MS.gene87795.t1 |
| chr7.1 | exon | 30980418 | 30980467 | 30980418 | ID=MS.gene87795.t1.exon3;Parent=MS.gene87795.t1 |
| chr7.1 | CDS | 30980418 | 30980467 | 30980418 | ID=cds.MS.gene87795.t1;Parent=MS.gene87795.t1 |
| Gene Sequence |
| Protein sequence |
