AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92188


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92188.t1 MTR_0167s0040 80.180 111 21 1 1 111 1 110 2.68e-38 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92188.t1 AT1G79200 70.270 74 22 0 80 153 85 158 1.57e-34 118

Find 21 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTCGCACAGCCCATAAA+TGG 0.229703 2.4:+27326987 MS.gene92188:CDS
ACCCTTATCATATTTATCTT+TGG 0.255453 2.4:-27323617 None:intergenic
GGTAGCAAACTCATTATTCT+TGG 0.322349 2.4:-27326831 None:intergenic
TTTGTCAAAGCTTGGAATAA+AGG 0.336053 2.4:+27326926 MS.gene92188:CDS
TTCCAAAGATAAATATGATA+AGG 0.406737 2.4:+27323615 MS.gene92188:CDS
AGGAAAAGAAGAGCAGAAAG+AGG 0.409042 2.4:+27323560 MS.gene92188:CDS
TTGCAGAATTTGTCAAAGCT+TGG 0.436101 2.4:+27326918 MS.gene92188:CDS
AGAGGGAAAAGAAAGAGAAA+AGG 0.452527 2.4:+27323578 MS.gene92188:CDS
TCCAAAGATAAATATGATAA+GGG 0.457676 2.4:+27323616 MS.gene92188:CDS
ATTCTTCTCTTCTTTCAGCC+AGG 0.510461 2.4:-27326852 None:intergenic
CTTGAATCGAATTACTATGA+AGG 0.515517 2.4:+27326953 MS.gene92188:CDS
GGAAAAGAAAGAGAAAAGGA+AGG 0.519175 2.4:+27323582 MS.gene92188:CDS
GGAAAAGAAGAGCAGAAAGA+GGG 0.525731 2.4:+27323561 MS.gene92188:CDS
AGAATAATGAGTTTGCTACC+TGG 0.553697 2.4:+27326834 MS.gene92188:CDS
TTCCATTTATGGGCTGTGCG+AGG 0.589094 2.4:-27326989 None:intergenic
CAGATGAGAAGAAAAGCAAG+AGG 0.597103 2.4:+27323512 MS.gene92188:intron
CTTGGCAAAATAGTCATCAC+CGG 0.597107 2.4:-27326813 None:intergenic
CCTTCAGATTCGGATTGCGA+AGG 0.611110 2.4:-27323246 None:intergenic
AACTGTAGATGATGATGATG+AGG 0.616853 2.4:+27323540 MS.gene92188:CDS
CAGCAAAAGTGAAAGAAACA+TGG 0.625791 2.4:+27326087 MS.gene92188:CDS
CCTTCGCAATCCGAATCTGA+AGG 0.628237 2.4:+27323246 MS.gene92188:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTTCCAAAATTAA+TGG + chr2.4:27324665-27324684 MS.gene92188:intron 10.0%
!! AATATATTTCCAAAATTAAT+GGG + chr2.4:27324666-27324685 MS.gene92188:intron 10.0%
!! AAATCCAAACATATTAAAAA+AGG + chr2.4:27326642-27326661 MS.gene92188:intron 15.0%
!! ATATGTTCTGATAAAAAAAA+AGG - chr2.4:27325373-27325392 None:intergenic 15.0%
!! CAAAATAGTGAAATTAAATT+GGG + chr2.4:27323416-27323435 MS.gene92188:intron 15.0%
!! TAAACCTAAAAATGATTTAT+AGG - chr2.4:27324571-27324590 None:intergenic 15.0%
!! TATGTTCTGATAAAAAAAAA+GGG - chr2.4:27325372-27325391 None:intergenic 15.0%
!! TCAAAATAGTGAAATTAAAT+TGG + chr2.4:27323415-27323434 MS.gene92188:intron 15.0%
!! TGGAATAAAAGTAAATAATT+AGG + chr2.4:27323334-27323353 MS.gene92188:intron 15.0%
!!! AATACCTATAAATCATTTTT+AGG + chr2.4:27324564-27324583 MS.gene92188:intron 15.0%
!! AGTAGTTAGTAATGTTTAAT+TGG + chr2.4:27323838-27323857 MS.gene92188:intron 20.0%
!! ATTTCTGTAACAAAATCAAA+TGG + chr2.4:27323735-27323754 MS.gene92188:intron 20.0%
!! TATTCTAAACAAAAGAACAT+TGG + chr2.4:27324172-27324191 MS.gene92188:intron 20.0%
!! TCATAGAAATGAAGTTATAT+TGG + chr2.4:27325910-27325929 MS.gene92188:intron 20.0%
!! TCCAAAGATAAATATGATAA+GGG + chr2.4:27323616-27323635 MS.gene92188:CDS 20.0%
!! TTCCAAAGATAAATATGATA+AGG + chr2.4:27323615-27323634 MS.gene92188:CDS 20.0%
!!! AAAATGATTGCTTAATGTTT+TGG - chr2.4:27324511-27324530 None:intergenic 20.0%
!!! ACTTTTTGATTTTCCATTTA+TGG - chr2.4:27327003-27327022 None:intergenic 20.0%
!!! AGGGAAATTTTTATTAAGTA+AGG + chr2.4:27326405-27326424 MS.gene92188:intron 20.0%
!!! CATATCTTTATTTCAAATGT+AGG + chr2.4:27326775-27326794 MS.gene92188:intron 20.0%
!!! CTTTTTGATTTTCCATTTAT+GGG - chr2.4:27327002-27327021 None:intergenic 20.0%
!!! GCTGTTATATTTTCTTTTTA+CGG + chr2.4:27326219-27326238 MS.gene92188:intron 20.0%
!!! TGGATTTCATTTTTGTTAAT+GGG + chr2.4:27323943-27323962 MS.gene92188:intron 20.0%
!!! TGTTCCTTTTTTAATATGTT+TGG - chr2.4:27326649-27326668 None:intergenic 20.0%
!!! TTGGATTTCATTTTTGTTAA+TGG + chr2.4:27323942-27323961 MS.gene92188:intron 20.0%
!!! TTTTAATATGTTTGGATTTG+CGG - chr2.4:27326641-27326660 None:intergenic 20.0%
! AAAACCGATATGTAAAAAGA+AGG - chr2.4:27325123-27325142 None:intergenic 25.0%
! AAAATATAACAGCACCAAAA+AGG - chr2.4:27326212-27326231 None:intergenic 25.0%
! ACCCTTATCATATTTATCTT+TGG - chr2.4:27323620-27323639 None:intergenic 25.0%
! AGCATTATTAGTAGTAGTAT+TGG - chr2.4:27326131-27326150 None:intergenic 25.0%
! ATACTGGGTATTATAGATTA+TGG + chr2.4:27324866-27324885 MS.gene92188:intron 25.0%
! ATTAAGTAAGGTGACATTAA+TGG + chr2.4:27326417-27326436 MS.gene92188:intron 25.0%
! GACTACTTCATATAAATAAC+AGG - chr2.4:27326703-27326722 None:intergenic 25.0%
! GATACATGATTGTAAAACAA+AGG - chr2.4:27323897-27323916 None:intergenic 25.0%
! GATATTCTACATTATAGAAC+TGG - chr2.4:27324534-27324553 None:intergenic 25.0%
! GCATTATTAGTAGTAGTATT+GGG - chr2.4:27326130-27326149 None:intergenic 25.0%
! TAAAAAATGGCAGAATGAAA+AGG - chr2.4:27323306-27323325 None:intergenic 25.0%
! TAAATTTGATTCAGACTCTT+AGG + chr2.4:27323668-27323687 MS.gene92188:intron 25.0%
! TACTGGGTATTATAGATTAT+GGG + chr2.4:27324867-27324886 MS.gene92188:intron 25.0%
! TACTGTCTTAAAAATTGAGT+TGG - chr2.4:27325163-27325182 None:intergenic 25.0%
! TATAAACAAATTCAGCAGAA+AGG - chr2.4:27326303-27326322 None:intergenic 25.0%
! TATGTTTGATTGGATATACT+GGG + chr2.4:27324851-27324870 MS.gene92188:intron 25.0%
! TCCTAATTATAAACACTTCT+CGG - chr2.4:27325508-27325527 None:intergenic 25.0%
! TTACCAATTTACAAATGTCT+AGG - chr2.4:27324048-27324067 None:intergenic 25.0%
! TTATGTTTGATTGGATATAC+TGG + chr2.4:27324850-27324869 MS.gene92188:intron 25.0%
! TTCCAATACACAGTAAAAAA+TGG - chr2.4:27323319-27323338 None:intergenic 25.0%
! TTCTATAATGTAGAATATCC+AGG + chr2.4:27324535-27324554 MS.gene92188:intron 25.0%
!! ACAAAATCGATTTATAAGGT+GGG - chr2.4:27325577-27325596 None:intergenic 25.0%
!! ACCTTATAAGTCAATTTTGT+AGG + chr2.4:27325616-27325635 MS.gene92188:intron 25.0%
!! ATACTTTGTCCCATTAATTT+TGG - chr2.4:27324678-27324697 None:intergenic 25.0%
!! ATCAGAACATATCTAAGATA+AGG + chr2.4:27325182-27325201 MS.gene92188:intron 25.0%
!! GACATTTTATAATCATATGC+AGG + chr2.4:27325943-27325962 MS.gene92188:intron 25.0%
!! GTATCCTTCTTTTTACATAT+CGG + chr2.4:27325116-27325135 MS.gene92188:intron 25.0%
!! GTGATAAAAGATTTTTCTTC+TGG - chr2.4:27326158-27326177 None:intergenic 25.0%
!! TCAGAACATATCTAAGATAA+GGG + chr2.4:27325183-27325202 MS.gene92188:intron 25.0%
!! TTATTTATCTAGTGGTTTGT+TGG + chr2.4:27326743-27326762 MS.gene92188:intron 25.0%
!!! AAAAAAAGTACCTTCAGATT+CGG - chr2.4:27323259-27323278 None:intergenic 25.0%
!!! ACCTTATAAATCGATTTTGT+CGG + chr2.4:27325577-27325596 MS.gene92188:intron 25.0%
!!! AGACTTCTTTTGAAAAATTG+TGG + chr2.4:27326379-27326398 MS.gene92188:intron 25.0%
!!! TTTTGAAAAATTGTGGATGA+GGG + chr2.4:27326386-27326405 MS.gene92188:intron 25.0%
!!! TTTTTACATATCGGTTTTGT+AGG + chr2.4:27325125-27325144 MS.gene92188:intron 25.0%
AAAATGTATTTCAAAGCAGG+AGG + chr2.4:27325094-27325113 MS.gene92188:intron 30.0%
AAGTTGAATTTGCAGTGAAA+TGG - chr2.4:27324734-27324753 None:intergenic 30.0%
AATACACCGATGATTCAAAA+GGG - chr2.4:27324776-27324795 None:intergenic 30.0%
ATACGCATAAATAGATTGTC+TGG + chr2.4:27323970-27323989 MS.gene92188:intron 30.0%
ATAGCAATAAGCTACCAAAA+GGG + chr2.4:27323807-27323826 MS.gene92188:intron 30.0%
ATATCCCAATCTTAGAAGTT+TGG - chr2.4:27325659-27325678 None:intergenic 30.0%
CAACCTAGACATTTGTAAAT+TGG + chr2.4:27324042-27324061 MS.gene92188:intron 30.0%
CAATTTACAAATGTCTAGGT+TGG - chr2.4:27324044-27324063 None:intergenic 30.0%
CAGCAAGTTTAACAAAATCA+CGG + chr2.4:27326538-27326557 MS.gene92188:intron 30.0%
CTGAAAATGTATTTCAAAGC+AGG + chr2.4:27325091-27325110 MS.gene92188:intron 30.0%
CTTGAATCGAATTACTATGA+AGG + chr2.4:27326953-27326972 MS.gene92188:CDS 30.0%
GATAATAGTCTGCTGTTATA+AGG + chr2.4:27324927-27324946 MS.gene92188:intron 30.0%
GTGATTGCTTTATGTTTGAT+TGG + chr2.4:27324841-27324860 MS.gene92188:intron 30.0%
TATAGCAATAAGCTACCAAA+AGG + chr2.4:27323806-27323825 MS.gene92188:intron 30.0%
TATCCCAATCTTAGAAGTTT+GGG - chr2.4:27325658-27325677 None:intergenic 30.0%
TGAAGTTGTATGTGTTGTAA+GGG + chr2.4:27325224-27325243 MS.gene92188:intron 30.0%
TGTTGAGGTTATTTATCTAG+TGG + chr2.4:27326735-27326754 MS.gene92188:intron 30.0%
TTGAATGTAGAATTCATGTC+AGG + chr2.4:27324371-27324390 MS.gene92188:intron 30.0%
TTGGAGATTTAACAAAACCA+CGG - chr2.4:27326569-27326588 None:intergenic 30.0%
TTTGTCAAAGCTTGGAATAA+AGG + chr2.4:27326926-27326945 MS.gene92188:CDS 30.0%
! AAGCCTTATAAAGATTACGT+TGG + chr2.4:27325847-27325866 MS.gene92188:intron 30.0%
! ACATAAGTCAGATTCTAAGA+TGG - chr2.4:27325783-27325802 None:intergenic 30.0%
! ATGTCTATTGACTAGATCAT+TGG - chr2.4:27324332-27324351 None:intergenic 30.0%
! ATTTGGTATCAGATCCTTTT+TGG + chr2.4:27326195-27326214 MS.gene92188:intron 30.0%
! ATTTTTACAAACCATCCTTG+AGG + chr2.4:27326442-27326461 MS.gene92188:intron 30.0%
! CAATTTTGTAGGCTTAAGTT+AGG + chr2.4:27325627-27325646 MS.gene92188:intron 30.0%
! GACAAAATCGATTTATAAGG+TGG - chr2.4:27325578-27325597 None:intergenic 30.0%
! GCCTACAAAATTGACTTATA+AGG - chr2.4:27325620-27325639 None:intergenic 30.0%
! GTTTTTCTCTGATCTGTTAT+CGG + chr2.4:27326877-27326896 MS.gene92188:CDS 30.0%
! TATCACTATCTAGTTTGACA+TGG + chr2.4:27324207-27324226 MS.gene92188:intron 30.0%
! TTTTTACAAACCATCCTTGA+GGG + chr2.4:27326443-27326462 MS.gene92188:intron 30.0%
!! ACCTTATAAGTCGATTTTGT+CGG + chr2.4:27325538-27325557 MS.gene92188:intron 30.0%
!! CCTTATAAATCGATTTTGTC+GGG + chr2.4:27325578-27325597 MS.gene92188:intron 30.0%
!! CTTTTGAAAAATTGTGGATG+AGG + chr2.4:27326385-27326404 MS.gene92188:intron 30.0%
!! GAGAAGTGTTTATAATTAGG+AGG + chr2.4:27325507-27325526 MS.gene92188:intron 30.0%
!! GTTGTTTCTATAAGCTATCT+TGG + chr2.4:27323777-27323796 MS.gene92188:intron 30.0%
!! TAGGATTTTCAAGAATTGTC+CGG + chr2.4:27326794-27326813 MS.gene92188:intron 30.0%
!! TAGTGGTTTGTTGGTATTTA+TGG + chr2.4:27326752-27326771 MS.gene92188:intron 30.0%
!! TAGTTTTTCTAGGAATCAAG+AGG + chr2.4:27324266-27324285 MS.gene92188:intron 30.0%
!! TCCGAGAAGTGTTTATAATT+AGG + chr2.4:27325504-27325523 MS.gene92188:intron 30.0%
!! TTTTCAAACTGGTTTAGGTT+GGG + chr2.4:27324101-27324120 MS.gene92188:intron 30.0%
!!! AAGCAATGTTGTTTTCAAAC+TGG + chr2.4:27324090-27324109 MS.gene92188:intron 30.0%
!!! ATTTTTAGGTTTACTGCTTG+AGG + chr2.4:27324578-27324597 MS.gene92188:intron 30.0%
!!! CTGCTTTGAAATACATTTTC+AGG - chr2.4:27325093-27325112 None:intergenic 30.0%
!!! TGCCATTTTTTACTGTGTAT+TGG + chr2.4:27323314-27323333 MS.gene92188:intron 30.0%
!!! TGTTGTTTTCAAACTGGTTT+AGG + chr2.4:27324096-27324115 MS.gene92188:intron 30.0%
AAACCAATCATTTCACTCCA+TGG + chr2.4:27324810-27324829 MS.gene92188:intron 35.0%
AAAGTTAGCTCAATGAGTGA+AGG + chr2.4:27325817-27325836 MS.gene92188:intron 35.0%
AGAGGGAAAAGAAAGAGAAA+AGG + chr2.4:27323578-27323597 MS.gene92188:CDS 35.0%
AGCCTCTTGTGTAAAAAACT+GGG + chr2.4:27325269-27325288 MS.gene92188:intron 35.0%
ATGATTCAAAAGGGAAAGAC+AGG - chr2.4:27324767-27324786 None:intergenic 35.0%
ATTTGCAAGACTACACACAT+AGG + chr2.4:27325018-27325037 MS.gene92188:intron 35.0%
CAATACACCGATGATTCAAA+AGG - chr2.4:27324777-27324796 None:intergenic 35.0%
CAGCAAAAGTGAAAGAAACA+TGG + chr2.4:27326087-27326106 MS.gene92188:CDS 35.0%
CTGATACCAAATATTCAGCA+TGG - chr2.4:27326187-27326206 None:intergenic 35.0%
CTTACAGTATACCAAATGGT+GGG + chr2.4:27325300-27325319 MS.gene92188:intron 35.0%
CTTGTGTAAAAAACTGGGTA+AGG + chr2.4:27325274-27325293 MS.gene92188:intron 35.0%
GAGCAAGGAAAAAACATGAA+AGG + chr2.4:27324605-27324624 MS.gene92188:intron 35.0%
GGAAAAGAAAGAGAAAAGGA+AGG + chr2.4:27323582-27323601 MS.gene92188:CDS 35.0%
GGTAGCAAACTCATTATTCT+TGG - chr2.4:27326834-27326853 None:intergenic 35.0%
GGTATTATAGATTATGGGTC+AGG + chr2.4:27324872-27324891 MS.gene92188:intron 35.0%
GTGAAGTTGTATGTGTTGTA+AGG + chr2.4:27325223-27325242 MS.gene92188:intron 35.0%
TCTGTTATGCTACTCATGAT+CGG + chr2.4:27325399-27325418 MS.gene92188:intron 35.0%
TGATAAAAAAAAAGGGCAGC+CGG - chr2.4:27325365-27325384 None:intergenic 35.0%
TGGCCAACGTAATCTTTATA+AGG - chr2.4:27325853-27325872 None:intergenic 35.0%
TTCTTGCCATGCTGAATATT+TGG + chr2.4:27326178-27326197 MS.gene92188:intron 35.0%
TTGCAGAATTTGTCAAAGCT+TGG + chr2.4:27326918-27326937 MS.gene92188:CDS 35.0%
TTTATAGGTATTTGCAAGCC+TGG - chr2.4:27324556-27324575 None:intergenic 35.0%
! AACTGACAGTTCAAGAGTAT+AGG + chr2.4:27326341-27326360 MS.gene92188:intron 35.0%
! AACTGTAGATGATGATGATG+AGG + chr2.4:27323540-27323559 MS.gene92188:CDS 35.0%
! ACTATCTAGTTTGACATGGA+GGG + chr2.4:27324211-27324230 MS.gene92188:intron 35.0%
! ACTCATTGAGCTAACTTTTG+AGG - chr2.4:27325815-27325834 None:intergenic 35.0%
! AGCAATCACTAATTTTGCCA+TGG - chr2.4:27324830-27324849 None:intergenic 35.0%
! ATTAGTAGTAGTATTGGGAG+TGG - chr2.4:27326125-27326144 None:intergenic 35.0%
! CAAAAGAACATTGGTACTGA+AGG + chr2.4:27324181-27324200 MS.gene92188:intron 35.0%
! CCCGACAAAATCGATTTATA+AGG - chr2.4:27325581-27325600 None:intergenic 35.0%
! CTCATTGAGCTAACTTTTGA+GGG - chr2.4:27325814-27325833 None:intergenic 35.0%
! GTCTTTCCCTTTTGAATCAT+CGG + chr2.4:27324767-27324786 MS.gene92188:intron 35.0%
! TCTAGGACGTACTATGATAA+AGG + chr2.4:27325705-27325724 MS.gene92188:intron 35.0%
! TGGGACAAAGTATCTGTATA+AGG + chr2.4:27324685-27324704 MS.gene92188:intron 35.0%
! TGGGAGTTTGAACTTTTGTA+AGG + chr2.4:27324237-27324256 MS.gene92188:intron 35.0%
! TTAGTAGTAGTATTGGGAGT+GGG - chr2.4:27326124-27326143 None:intergenic 35.0%
! TTTTACAAACCATCCTTGAG+GGG + chr2.4:27326444-27326463 MS.gene92188:intron 35.0%
! TTTTCGCAAAAGCTATGCTT+TGG - chr2.4:27326588-27326607 None:intergenic 35.0%
!! AGAATAATGAGTTTGCTACC+TGG + chr2.4:27326834-27326853 MS.gene92188:CDS 35.0%
!! CAACCCAAACTTCTAAGATT+GGG + chr2.4:27325652-27325671 MS.gene92188:intron 35.0%
!! CCTTATAAGTCGATTTTGTC+GGG + chr2.4:27325539-27325558 MS.gene92188:intron 35.0%
!! GTTTTCAAACTGGTTTAGGT+TGG + chr2.4:27324100-27324119 MS.gene92188:intron 35.0%
!! TCAACCCAAACTTCTAAGAT+TGG + chr2.4:27325651-27325670 MS.gene92188:intron 35.0%
!! TTTCAAACTGGTTTAGGTTG+GGG + chr2.4:27324102-27324121 MS.gene92188:intron 35.0%
!!! AAGGCTATGCTAGTTTTTCT+AGG + chr2.4:27324256-27324275 MS.gene92188:intron 35.0%
!!! TACCCAGTTTTTTACACAAG+AGG - chr2.4:27325274-27325293 None:intergenic 35.0%
AAAGGCAACACTGGTAAAAC+AGG - chr2.4:27326285-27326304 None:intergenic 40.0%
AATTTGCAGTGAAATGGCAC+AGG - chr2.4:27324728-27324747 None:intergenic 40.0%
AGCTACACTGAAGGTAATCT+AGG + chr2.4:27325688-27325707 MS.gene92188:intron 40.0%
AGGAAAAGAAGAGCAGAAAG+AGG + chr2.4:27323560-27323579 MS.gene92188:CDS 40.0%
AGGACGTACTATGATAAAGG+AGG + chr2.4:27325708-27325727 MS.gene92188:intron 40.0%
AGGAGTTAGTTAGAAGTCGT+TGG + chr2.4:27323923-27323942 MS.gene92188:intron 40.0%
ATTCTCCAAATGTCCAGTCT+TGG + chr2.4:27325429-27325448 MS.gene92188:intron 40.0%
ATTCTTCTCTTCTTTCAGCC+AGG - chr2.4:27326855-27326874 None:intergenic 40.0%
CAAAAGGGAAAGACAGGAAT+AGG - chr2.4:27324761-27324780 None:intergenic 40.0%
CAGATGAGAAGAAAAGCAAG+AGG + chr2.4:27323512-27323531 MS.gene92188:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+TGG + chr2.4:27325268-27325287 MS.gene92188:intron 40.0%
CGGACCATATCTCATTGAAT+GGG - chr2.4:27325488-27325507 None:intergenic 40.0%
CGGTGAGTTTGATAGAATCA+AGG - chr2.4:27326621-27326640 None:intergenic 40.0%
CTGCTGTTATAAGGTCTACT+TGG + chr2.4:27324936-27324955 MS.gene92188:intron 40.0%
CTGTTATGCTACTCATGATC+GGG + chr2.4:27325400-27325419 MS.gene92188:intron 40.0%
CTTGGCAAAATAGTCATCAC+CGG - chr2.4:27326816-27326835 None:intergenic 40.0%
CTTTACATGTCCTATCCTAG+AGG - chr2.4:27324992-27325011 None:intergenic 40.0%
GCTGCTTACAGTATACCAAA+TGG + chr2.4:27325296-27325315 MS.gene92188:intron 40.0%
GCTGTGATTCCAAACATACA+CGG - chr2.4:27326522-27326541 None:intergenic 40.0%
GCTTACAGTATACCAAATGG+TGG + chr2.4:27325299-27325318 MS.gene92188:intron 40.0%
GGAAAAGAAGAGCAGAAAGA+GGG + chr2.4:27323561-27323580 MS.gene92188:CDS 40.0%
GGACCATATCTCATTGAATG+GGG - chr2.4:27325487-27325506 None:intergenic 40.0%
GTCAGAAACTGTGATTGTTG+AGG + chr2.4:27326720-27326739 MS.gene92188:intron 40.0%
GTTCCCCATTCAATGAGATA+TGG + chr2.4:27325481-27325500 MS.gene92188:intron 40.0%
TAACCCTAAAAGCAAGCTCA+AGG + chr2.4:27324901-27324920 MS.gene92188:intron 40.0%
TACAATCATGTATCAGCTGC+AGG + chr2.4:27323903-27323922 MS.gene92188:intron 40.0%
TCGGACCATATCTCATTGAA+TGG - chr2.4:27325489-27325508 None:intergenic 40.0%
TCTAGGAATCAAGAGGATAC+TGG + chr2.4:27324273-27324292 MS.gene92188:intron 40.0%
TCTATGAGATGCTAGCTCAA+TGG - chr2.4:27326483-27326502 None:intergenic 40.0%
TCTTACATTGACCAGTGATG+TGG - chr2.4:27325873-27325892 None:intergenic 40.0%
TTGAAGACTCCGTGTATGTT+TGG + chr2.4:27326510-27326529 MS.gene92188:intron 40.0%
TTGCCATGGAGTGAAATGAT+TGG - chr2.4:27324816-27324835 None:intergenic 40.0%
TTGTATGTGTTGTAAGGGCA+TGG + chr2.4:27325229-27325248 MS.gene92188:intron 40.0%
! CACTATCTAGTTTGACATGG+AGG + chr2.4:27324210-27324229 MS.gene92188:intron 40.0%
! CCCGACAAAATCGACTTATA+AGG - chr2.4:27325542-27325561 None:intergenic 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG + chr2.4:27325549-27325568 MS.gene92188:intron 40.0%
! TGTATGTGTTGTAAGGGCAT+GGG + chr2.4:27325230-27325249 MS.gene92188:intron 40.0%
!! ACTCCTTGAGCTTGCTTTTA+GGG - chr2.4:27324907-27324926 None:intergenic 40.0%
!! CGGTTTTGTAGGATTGAGTT+AGG + chr2.4:27325136-27325155 MS.gene92188:intron 40.0%
AGGAGGTTACGATTCCGATA+TGG + chr2.4:27325725-27325744 MS.gene92188:intron 45.0%
AGGTGTGGAGAGTCTCATAT+TGG + chr2.4:27325056-27325075 MS.gene92188:intron 45.0%
AGTTTGACATGGAGGGTCTT+GGG + chr2.4:27324218-27324237 MS.gene92188:intron 45.0%
ATTCAGCAGAAAGGCAACAC+TGG - chr2.4:27326294-27326313 None:intergenic 45.0%
GCAACACTGGTAAAACAGGA+TGG - chr2.4:27326281-27326300 None:intergenic 45.0%
GCTTCTAGTAGCTACACTGA+AGG + chr2.4:27325679-27325698 MS.gene92188:intron 45.0%
GGTACCAATGTTTGCAGTCT+GGG - chr2.4:27325762-27325781 None:intergenic 45.0%
GTCCTATCCTAGAGGTGAAA+TGG - chr2.4:27324984-27325003 None:intergenic 45.0%
TAGTTTGACATGGAGGGTCT+TGG + chr2.4:27324217-27324236 MS.gene92188:intron 45.0%
TGAGATGCTAGCTCAATGGA+CGG - chr2.4:27326479-27326498 None:intergenic 45.0%
TGGTACCAATGTTTGCAGTC+TGG - chr2.4:27325763-27325782 None:intergenic 45.0%
! ACTACTGACACAAGCCCTTT+TGG - chr2.4:27323824-27323843 None:intergenic 45.0%
! AGACTAACTGCAGGGGTTTT+GGG + chr2.4:27324302-27324321 MS.gene92188:intron 45.0%
! CAACATGCCATTTCACCTCT+AGG + chr2.4:27324974-27324993 MS.gene92188:intron 45.0%
! GAATCAAGAGGATACTGGCT+AGG + chr2.4:27324278-27324297 MS.gene92188:intron 45.0%
! TAGACTAACTGCAGGGGTTT+TGG + chr2.4:27324301-27324320 MS.gene92188:intron 45.0%
! TCTAAGATAAGGGAGAGCCT+TGG + chr2.4:27325193-27325212 MS.gene92188:intron 45.0%
!! CACTCCTTGAGCTTGCTTTT+AGG - chr2.4:27324908-27324927 None:intergenic 45.0%
!! TGCCATTTCACCTCTAGGAT+AGG + chr2.4:27324979-27324998 MS.gene92188:intron 45.0%
!!! ACTGCTTGAGGTTTTGAGCA+AGG + chr2.4:27324590-27324609 MS.gene92188:intron 45.0%
AATGTCCAGTCTTGGACGTG+AGG + chr2.4:27325437-27325456 MS.gene92188:intron 50.0%
ACAAAGCTCCCACATACGCA+GGG - chr2.4:27325339-27325358 None:intergenic 50.0%
AGTTCGAATCCCCTCAAGGA+TGG - chr2.4:27326456-27326475 None:intergenic 50.0%
CACGTCCAAGACTGGACATT+TGG - chr2.4:27325437-27325456 None:intergenic 50.0%
CAGTGAAATGGCACAGGACA+AGG - chr2.4:27324722-27324741 None:intergenic 50.0%
CCTTCAGATTCGGATTGCGA+AGG - chr2.4:27323249-27323268 None:intergenic 50.0%
CCTTCGCAATCCGAATCTGA+AGG + chr2.4:27323246-27323265 MS.gene92188:CDS 50.0%
GAAATGGCACAGGACAAGGA+TGG - chr2.4:27324718-27324737 None:intergenic 50.0%
GAACTGTCAGTTGCAGCATG+TGG - chr2.4:27326333-27326352 None:intergenic 50.0%
GATTACGTTGGCCACATCAC+TGG + chr2.4:27325859-27325878 MS.gene92188:intron 50.0%
GCTAGGTAGACTAACTGCAG+GGG + chr2.4:27324295-27324314 MS.gene92188:intron 50.0%
GGCTAGGTAGACTAACTGCA+GGG + chr2.4:27324294-27324313 MS.gene92188:intron 50.0%
GGGAGACTCTGCTTCCATAT+CGG - chr2.4:27325742-27325761 None:intergenic 50.0%
GTCTCCCAGACTGCAAACAT+TGG + chr2.4:27325755-27325774 MS.gene92188:intron 50.0%
TACACACATAGGTTGCCCGA+CGG + chr2.4:27325029-27325048 MS.gene92188:intron 50.0%
TGGCTAGGTAGACTAACTGC+AGG + chr2.4:27324293-27324312 MS.gene92188:intron 50.0%
! TATGTGGGAGCTTTGTGCAC+CGG + chr2.4:27325343-27325362 MS.gene92188:intron 50.0%
! TTCCATTTATGGGCTGTGCG+AGG - chr2.4:27326992-27327011 None:intergenic 50.0%
!! ACAAAATCACGGTGTCACCG+TGG + chr2.4:27326549-27326568 MS.gene92188:intron 50.0%
ACAACTTCACCGTTGCGCCA+AGG - chr2.4:27325213-27325232 None:intergenic 55.0%
ACATACGCAGGGTCTGGCAA+GGG - chr2.4:27325328-27325347 None:intergenic 55.0%
ACCATCCTCACGTCCAAGAC+TGG - chr2.4:27325445-27325464 None:intergenic 55.0%
ACGGAGTTCGAATCCCCTCA+AGG - chr2.4:27326460-27326479 None:intergenic 55.0%
ATAGGTTGCCCGACGGATCT+AGG + chr2.4:27325036-27325055 MS.gene92188:intron 55.0%
CACAAAGCTCCCACATACGC+AGG - chr2.4:27325340-27325359 None:intergenic 55.0%
CTCTCCACACCTAGATCCGT+CGG - chr2.4:27325048-27325067 None:intergenic 55.0%
TCCAGTCTTGGACGTGAGGA+TGG + chr2.4:27325441-27325460 MS.gene92188:intron 55.0%
TCTCCACACCTAGATCCGTC+GGG - chr2.4:27325047-27325066 None:intergenic 55.0%
TTGCCAGACCCTGCGTATGT+GGG + chr2.4:27325328-27325347 MS.gene92188:intron 55.0%
AAGGGAGAGCCTTGGCGCAA+CGG + chr2.4:27325201-27325220 MS.gene92188:intron 60.0%
CACATACGCAGGGTCTGGCA+AGG - chr2.4:27325329-27325348 None:intergenic 60.0%
CATACGCAGGGTCTGGCAAG+GGG - chr2.4:27325327-27325346 None:intergenic 60.0%
CGCCTCGCACAGCCCATAAA+TGG + chr2.4:27326987-27327006 MS.gene92188:CDS 60.0%
CTTGCCAGACCCTGCGTATG+TGG + chr2.4:27325327-27325346 MS.gene92188:intron 60.0%
TGGCAAGGGGTCCCACCATT+TGG - chr2.4:27325314-27325333 None:intergenic 60.0%
TTGCCCGACGGATCTAGGTG+TGG + chr2.4:27325041-27325060 MS.gene92188:intron 60.0%
GCTCCCACATACGCAGGGTC+TGG - chr2.4:27325334-27325353 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 27323213 27327024 27323213 ID=MS.gene92188
chr2.4 mRNA 27323213 27327024 27323213 ID=MS.gene92188.t1;Parent=MS.gene92188
chr2.4 exon 27323213 27323267 27323213 ID=MS.gene92188.t1.exon1;Parent=MS.gene92188.t1
chr2.4 CDS 27323213 27323267 27323213 ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1
chr2.4 exon 27323515 27323637 27323515 ID=MS.gene92188.t1.exon2;Parent=MS.gene92188.t1
chr2.4 CDS 27323515 27323637 27323515 ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1
chr2.4 exon 27326053 27326108 27326053 ID=MS.gene92188.t1.exon3;Parent=MS.gene92188.t1
chr2.4 CDS 27326053 27326108 27326053 ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1
chr2.4 exon 27326797 27327024 27326797 ID=MS.gene92188.t1.exon4;Parent=MS.gene92188.t1
chr2.4 CDS 27326797 27327024 27326797 ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1
Gene Sequence

>MS.gene92188

ATGGGAAGCGATCGAAAATCAAAGAGAAGTTATCCTTCGCAATCCGAATCTGAAGGTACTTTTTTTTTTTCTTCTTCTTTTTCTATTTTTCCTTTTCATTCTGCCATTTTTTACTGTGTATTGGAATAAAAGTAAATAATTAGGTTTCAAGAAAAATTTGAACTTTTTTGCAGTCAATAGTGATATTTGATTCACTTGTTCTTCAAAATAGTGAAATTAAATTGGGATATTTGATTTTTCTAAATTCTAATGTTGATATTGATATAAATTGTTAATAATGTTAAGTGTTAATTGAGTGACAGATGAGAAGAAAAGCAAGAGGAAGAGAACTGTAGATGATGATGATGAGGAAAAGAAGAGCAGAAAGAGGGAAAAGAAAGAGAAAAGGAAGGATAAGAAGCATTCCAAAGATAAATATGATAAGGGTACGTGATTATTTATTTAATTTATTGAGCTAAATTTGATTCAGACTCTTAGGACATGTTTGCATACATAGCTTAATTAAGTGCTTGTGTATAAGCTATTTCTGTAACAAAATCAAATGGTTTTTAATACAAGCTATAAGTTGTTTCTATAAGCTATCTTGGAGAACTTATAGCAATAAGCTACCAAAAGGGCTTGTGTCAGTAGTTAGTAATGTTTAATTGGTTGATATTTTTTAGCATTAAACTGTACTTTGTTCCTTTGTTTTACAATCATGTATCAGCTGCAGGAGTTAGTTAGAAGTCGTTGGATTTCATTTTTGTTAATGGGACTTATACGCATAAATAGATTGTCTGGTAGAACTGTTTACTATAACTCTTGAATAACTGAATATGATAACAATGTCCAACCTAGACATTTGTAAATTGGTAACTTTAAACTTGTATTTGTTTGTAAGCAATGTTGTTTTCAAACTGGTTTAGGTTGGGGTTCTTTATTTTATATAATAACACAACTATGTCTCTACTTAACTGAATTATTCTAAACAAAAGAACATTGGTACTGAAGGATTTATCACTATCTAGTTTGACATGGAGGGTCTTGGGAGTTTGAACTTTTGTAAGGCTATGCTAGTTTTTCTAGGAATCAAGAGGATACTGGCTAGGTAGACTAACTGCAGGGGTTTTGGGATCTCCAATGATCTAGTCAATAGACATGCTGATATTGTGCGTAAAATTGAATGTAGAATTCATGTCAGGCATTTTCATTGAATCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGATGTGCGAAAAGAAAGTTTGTACCAAAACATTAAGCAATCATTTTCCAGTTCTATAATGTAGAATATCCAGGCTTGCAAATACCTATAAATCATTTTTAGGTTTACTGCTTGAGGTTTTGAGCAAGGAAAAAACATGAAAGGAATGTTTCAGATCATTGTAAACAATAACATGTTTATAAAATATATTTCCAAAATTAATGGGACAAAGTATCTGTATAAGGCTATAAGCCATCCTTGTCCTGTGCCATTTCACTGCAAATTCAACTTGTTACCTATTCCTGTCTTTCCCTTTTGAATCATCGGTGTATTGAGTATCAAATCATAAACCAATCATTTCACTCCATGGCAAAATTAGTGATTGCTTTATGTTTGATTGGATATACTGGGTATTATAGATTATGGGTCAGGCTTAACTAACCCTAAAAGCAAGCTCAAGGAGTGATAATAGTCTGCTGTTATAAGGTCTACTTGGTCATATAGTTGAGCTCAACATGCCATTTCACCTCTAGGATAGGACATGTAAAGTGTGAAATTTGCAAGACTACACACATAGGTTGCCCGACGGATCTAGGTGTGGAGAGTCTCATATTGGATGAGATGTGACCTGAAAATGTATTTCAAAGCAGGAGGTATCCTTCTTTTTACATATCGGTTTTGTAGGATTGAGTTAGGTCCAACTCAATTTTTAAGACAGTATCAGAACATATCTAAGATAAGGGAGAGCCTTGGCGCAACGGTGAAGTTGTATGTGTTGTAAGGGCATGGGTTCAAGTCTTGCAAACAGCCTCTTGTGTAAAAAACTGGGTAAGGCTGCTTACAGTATACCAAATGGTGGGACCCCTTGCCAGACCCTGCGTATGTGGGAGCTTTGTGCACCGGCTGCCCTTTTTTTTTATCAGAACATATCTAAGATCTGTTATGCTACTCATGATCGGGTCACTCATTCTCCAAATGTCCAGTCTTGGACGTGAGGATGGTGTGTTGACTGTTGAAAGTTCCCCATTCAATGAGATATGGTCCGAGAAGTGTTTATAATTAGGAGGCATCTATCACCTTATAAGTCGATTTTGTCGGGTTAAGTTAGGTTCCCACCTTATAAATCGATTTTGTCGGGTTAAGTTAGGTTCTCACCTTATAAGTCAATTTTGTAGGCTTAAGTTAGGTTCAACCCAAACTTCTAAGATTGGGATATGCTTCTAGTAGCTACACTGAAGGTAATCTAGGACGTACTATGATAAAGGAGGTTACGATTCCGATATGGAAGCAGAGTCTCCCAGACTGCAAACATTGGTACCATCTTAGAATCTGACTTATGTCTAAATCACCCTCAAAAGTTAGCTCAATGAGTGAAGGATTGTCTAAGCCTTATAAAGATTACGTTGGCCACATCACTGGTCAATGTAAGATCTCAACAAGTATTCAGTCATAGAAATGAAGTTATATTGGATTATAAAATGACATTTTATAATCATATGCAGGAAAAAGAATAAATTCTCTTTTGAAAGATTATATTTTTACGTTGTTATAATATTTTATTTTTATATTGACATTCTGTTGTTATTTCAGATAAGAAGTTAAAAGACAAGCACAAAAGTAAACGCAGCAAAAGTGAAAGAAACATGGTGAGTTGTGTTCCCACTCCCAATACTACTACTAATAATGCTACATCCAGAAGAAAAATCTTTTATCACTTCTTGCCATGCTGAATATTTGGTATCAGATCCTTTTTGGTGCTGTTATATTTTCTTTTTACGGAAATCATTTATATGAGTATTTGTTAATTCAACTCTGCCATCCTGTTTTACCAGTGTTGCCTTTCTGCTGAATTTGTTTATATTCAGAACCACATGCTGCAACTGACAGTTCAAGAGTATAGGTTTTTCTTATTTTGAAGACTTCTTTTGAAAAATTGTGGATGAGGGAAATTTTTATTAAGTAAGGTGACATTAATGGTCATTTTTACAAACCATCCTTGAGGGGATTCGAACTCCGTCCATTGAGCTAGCATCTCATAGACTGTATTTTGAAGACTCCGTGTATGTTTGGAATCACAGCAAGTTTAACAAAATCACGGTGTCACCGTGGTTTTGTTAAATCTCCAAAGCATAGCTTTTGCGAAAAATCAGTCACGCCTTGATTCTATCAAACTCACCGCAAATCCAAACATATTAAAAAAGGAACATGATTTCTTGTTGATTGTGACATGTTACTATCCTGTTATTTATATGAAGTAGTCAGAAACTGTGATTGTTGAGGTTATTTATCTAGTGGTTTGTTGGTATTTATGGCATATCTTTATTTCAAATGTAGGATTTTCAAGAATTGTCCGGTGATGACTATTTTGCCAAGAATAATGAGTTTGCTACCTGGCTGAAAGAAGAGAAGAATGTGTTTTTCTCTGATCTGTTATCGGAGTCAGCACGTGAGTTGTTTGCAGAATTTGTCAAAGCTTGGAATAAAGGAAAGCTTGAATCGAATTACTATGAAGGCATTAAAACTGCGCCTCGCACAGCCCATAAATGGAAAATCAAAAAGTAG

Protein sequence

>MS.gene92188.t1

MGSDRKSKRSYPSQSESEDEKKSKRKRTVDDDDEEKKSRKREKKEKRKDKKHSKDKYDKDKKLKDKHKSKRSKSERNMDFQELSGDDYFAKNNEFATWLKEEKNVFFSDLLSESARELFAEFVKAWNKGKLESNYYEGIKTAPRTAHKWKIKK