Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92188.t1 | AFK38998.1 | 97.3 | 74 | 2 | 0 | 80 | 153 | 80 | 153 | 2.70E-33 | 151.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92188.t1 | A0A1S4AX27 | 71.6 | 74 | 21 | 0 | 80 | 153 | 81 | 154 | 3.5e-26 | 119.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92188.t1 | I3SFF6 | 97.3 | 74 | 2 | 0 | 80 | 153 | 80 | 153 | 1.9e-33 | 151.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene92188 | 0.805775 | 1.13E-49 | -1.69E-46 |
MS.gene049159 | MS.gene92188 | 0.818295 | 2.11E-52 | -1.69E-46 |
MS.gene049254 | MS.gene92188 | 0.828521 | 8.58E-55 | -1.69E-46 |
MS.gene049343 | MS.gene92188 | 0.829882 | 4.01E-55 | -1.69E-46 |
MS.gene049821 | MS.gene92188 | 0.805309 | 1.42E-49 | -1.69E-46 |
MS.gene049983 | MS.gene92188 | 0.801299 | 9.62E-49 | -1.69E-46 |
MS.gene050724 | MS.gene92188 | 0.802386 | 5.75E-49 | -1.69E-46 |
MS.gene050750 | MS.gene92188 | 0.827934 | 1.19E-54 | -1.69E-46 |
MS.gene050905 | MS.gene92188 | -0.825234 | 5.24E-54 | -1.69E-46 |
MS.gene050953 | MS.gene92188 | 0.842673 | 2.24E-58 | -1.69E-46 |
MS.gene051181 | MS.gene92188 | 0.81728 | 3.58E-52 | -1.69E-46 |
MS.gene051243 | MS.gene92188 | 0.822382 | 2.44E-53 | -1.69E-46 |
MS.gene05134 | MS.gene92188 | 0.816454 | 5.48E-52 | -1.69E-46 |
MS.gene051452 | MS.gene92188 | 0.835635 | 1.50E-56 | -1.69E-46 |
MS.gene051975 | MS.gene92188 | 0.808544 | 2.94E-50 | -1.69E-46 |
MS.gene052012 | MS.gene92188 | 0.815891 | 7.33E-52 | -1.69E-46 |
MS.gene052519 | MS.gene92188 | 0.861978 | 7.02E-64 | -1.69E-46 |
MS.gene052773 | MS.gene92188 | 0.816286 | 5.98E-52 | -1.69E-46 |
MS.gene052863 | MS.gene92188 | 0.827761 | 1.31E-54 | -1.69E-46 |
MS.gene052954 | MS.gene92188 | 0.829435 | 5.16E-55 | -1.69E-46 |
MS.gene053006 | MS.gene92188 | 0.860114 | 2.59E-63 | -1.69E-46 |
MS.gene053008 | MS.gene92188 | 0.841326 | 5.08E-58 | -1.69E-46 |
MS.gene053145 | MS.gene92188 | 0.803527 | 3.34E-49 | -1.69E-46 |
MS.gene053226 | MS.gene92188 | 0.81964 | 1.04E-52 | -1.69E-46 |
MS.gene05415 | MS.gene92188 | 0.809054 | 2.29E-50 | -1.69E-46 |
MS.gene054405 | MS.gene92188 | 0.835718 | 1.43E-56 | -1.69E-46 |
MS.gene054651 | MS.gene92188 | 0.808733 | 2.68E-50 | -1.69E-46 |
MS.gene054657 | MS.gene92188 | 0.847181 | 1.36E-59 | -1.69E-46 |
MS.gene054658 | MS.gene92188 | 0.816157 | 6.39E-52 | -1.69E-46 |
MS.gene054775 | MS.gene92188 | 0.801065 | 1.07E-48 | -1.69E-46 |
MS.gene05510 | MS.gene92188 | 0.815 | 1.16E-51 | -1.69E-46 |
MS.gene05517 | MS.gene92188 | 0.83302 | 6.78E-56 | -1.69E-46 |
MS.gene055623 | MS.gene92188 | 0.83945 | 1.57E-57 | -1.69E-46 |
MS.gene055818 | MS.gene92188 | 0.855546 | 5.87E-62 | -1.69E-46 |
MS.gene055841 | MS.gene92188 | 0.825965 | 3.52E-54 | -1.69E-46 |
MS.gene056174 | MS.gene92188 | 0.817638 | 2.97E-52 | -1.69E-46 |
MS.gene056215 | MS.gene92188 | 0.808329 | 3.27E-50 | -1.69E-46 |
MS.gene056366 | MS.gene92188 | 0.824256 | 8.91E-54 | -1.69E-46 |
MS.gene056506 | MS.gene92188 | 0.814856 | 1.24E-51 | -1.69E-46 |
MS.gene056595 | MS.gene92188 | 0.812118 | 4.98E-51 | -1.69E-46 |
MS.gene056699 | MS.gene92188 | 0.800152 | 1.65E-48 | -1.69E-46 |
MS.gene056776 | MS.gene92188 | 0.820669 | 6.07E-53 | -1.69E-46 |
MS.gene05690 | MS.gene92188 | 0.808171 | 3.53E-50 | -1.69E-46 |
MS.gene056986 | MS.gene92188 | 0.81516 | 1.07E-51 | -1.69E-46 |
MS.gene057208 | MS.gene92188 | 0.837358 | 5.45E-57 | -1.69E-46 |
MS.gene057444 | MS.gene92188 | 0.814285 | 1.67E-51 | -1.69E-46 |
MS.gene057598 | MS.gene92188 | 0.808937 | 2.42E-50 | -1.69E-46 |
MS.gene057693 | MS.gene92188 | 0.821935 | 3.10E-53 | -1.69E-46 |
MS.gene057855 | MS.gene92188 | 0.806603 | 7.59E-50 | -1.69E-46 |
MS.gene058009 | MS.gene92188 | 0.820065 | 8.35E-53 | -1.69E-46 |
MS.gene058088 | MS.gene92188 | 0.827353 | 1.64E-54 | -1.69E-46 |
MS.gene058146 | MS.gene92188 | 0.835601 | 1.53E-56 | -1.69E-46 |
MS.gene05847 | MS.gene92188 | 0.811248 | 7.70E-51 | -1.69E-46 |
MS.gene058548 | MS.gene92188 | 0.814482 | 1.51E-51 | -1.69E-46 |
MS.gene058549 | MS.gene92188 | 0.812237 | 4.69E-51 | -1.69E-46 |
MS.gene058783 | MS.gene92188 | 0.829463 | 5.07E-55 | -1.69E-46 |
MS.gene058979 | MS.gene92188 | 0.827428 | 1.57E-54 | -1.69E-46 |
MS.gene059151 | MS.gene92188 | 0.814725 | 1.33E-51 | -1.69E-46 |
MS.gene05979 | MS.gene92188 | 0.820612 | 6.26E-53 | -1.69E-46 |
MS.gene059830 | MS.gene92188 | 0.809959 | 1.46E-50 | -1.69E-46 |
MS.gene059842 | MS.gene92188 | 0.832262 | 1.04E-55 | -1.69E-46 |
MS.gene060310 | MS.gene92188 | 0.819755 | 9.83E-53 | -1.69E-46 |
MS.gene060322 | MS.gene92188 | 0.819839 | 9.41E-53 | -1.69E-46 |
MS.gene060429 | MS.gene92188 | 0.846019 | 2.82E-59 | -1.69E-46 |
MS.gene060572 | MS.gene92188 | 0.830751 | 2.46E-55 | -1.69E-46 |
MS.gene060586 | MS.gene92188 | 0.806486 | 8.04E-50 | -1.69E-46 |
MS.gene060803 | MS.gene92188 | 0.816049 | 6.76E-52 | -1.69E-46 |
MS.gene060907 | MS.gene92188 | 0.806719 | 7.18E-50 | -1.69E-46 |
MS.gene060917 | MS.gene92188 | 0.811803 | 5.83E-51 | -1.69E-46 |
MS.gene060935 | MS.gene92188 | 0.811696 | 6.15E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92188.t1 | MTR_0167s0040 | 80.180 | 111 | 21 | 1 | 1 | 111 | 1 | 110 | 2.68e-38 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92188.t1 | AT1G79200 | 70.270 | 74 | 22 | 0 | 80 | 153 | 85 | 158 | 1.57e-34 | 118 |
Find 21 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCCTCGCACAGCCCATAAA+TGG | 0.229703 | 2.4:+27326987 | MS.gene92188:CDS |
ACCCTTATCATATTTATCTT+TGG | 0.255453 | 2.4:-27323617 | None:intergenic |
GGTAGCAAACTCATTATTCT+TGG | 0.322349 | 2.4:-27326831 | None:intergenic |
TTTGTCAAAGCTTGGAATAA+AGG | 0.336053 | 2.4:+27326926 | MS.gene92188:CDS |
TTCCAAAGATAAATATGATA+AGG | 0.406737 | 2.4:+27323615 | MS.gene92188:CDS |
AGGAAAAGAAGAGCAGAAAG+AGG | 0.409042 | 2.4:+27323560 | MS.gene92188:CDS |
TTGCAGAATTTGTCAAAGCT+TGG | 0.436101 | 2.4:+27326918 | MS.gene92188:CDS |
AGAGGGAAAAGAAAGAGAAA+AGG | 0.452527 | 2.4:+27323578 | MS.gene92188:CDS |
TCCAAAGATAAATATGATAA+GGG | 0.457676 | 2.4:+27323616 | MS.gene92188:CDS |
ATTCTTCTCTTCTTTCAGCC+AGG | 0.510461 | 2.4:-27326852 | None:intergenic |
CTTGAATCGAATTACTATGA+AGG | 0.515517 | 2.4:+27326953 | MS.gene92188:CDS |
GGAAAAGAAAGAGAAAAGGA+AGG | 0.519175 | 2.4:+27323582 | MS.gene92188:CDS |
GGAAAAGAAGAGCAGAAAGA+GGG | 0.525731 | 2.4:+27323561 | MS.gene92188:CDS |
AGAATAATGAGTTTGCTACC+TGG | 0.553697 | 2.4:+27326834 | MS.gene92188:CDS |
TTCCATTTATGGGCTGTGCG+AGG | 0.589094 | 2.4:-27326989 | None:intergenic |
CAGATGAGAAGAAAAGCAAG+AGG | 0.597103 | 2.4:+27323512 | MS.gene92188:intron |
CTTGGCAAAATAGTCATCAC+CGG | 0.597107 | 2.4:-27326813 | None:intergenic |
CCTTCAGATTCGGATTGCGA+AGG | 0.611110 | 2.4:-27323246 | None:intergenic |
AACTGTAGATGATGATGATG+AGG | 0.616853 | 2.4:+27323540 | MS.gene92188:CDS |
CAGCAAAAGTGAAAGAAACA+TGG | 0.625791 | 2.4:+27326087 | MS.gene92188:CDS |
CCTTCGCAATCCGAATCTGA+AGG | 0.628237 | 2.4:+27323246 | MS.gene92188:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATATTTCCAAAATTAA+TGG | + | chr2.4:27324665-27324684 | MS.gene92188:intron | 10.0% |
!! | AATATATTTCCAAAATTAAT+GGG | + | chr2.4:27324666-27324685 | MS.gene92188:intron | 10.0% |
!! | AAATCCAAACATATTAAAAA+AGG | + | chr2.4:27326642-27326661 | MS.gene92188:intron | 15.0% |
!! | ATATGTTCTGATAAAAAAAA+AGG | - | chr2.4:27325373-27325392 | None:intergenic | 15.0% |
!! | CAAAATAGTGAAATTAAATT+GGG | + | chr2.4:27323416-27323435 | MS.gene92188:intron | 15.0% |
!! | TAAACCTAAAAATGATTTAT+AGG | - | chr2.4:27324571-27324590 | None:intergenic | 15.0% |
!! | TATGTTCTGATAAAAAAAAA+GGG | - | chr2.4:27325372-27325391 | None:intergenic | 15.0% |
!! | TCAAAATAGTGAAATTAAAT+TGG | + | chr2.4:27323415-27323434 | MS.gene92188:intron | 15.0% |
!! | TGGAATAAAAGTAAATAATT+AGG | + | chr2.4:27323334-27323353 | MS.gene92188:intron | 15.0% |
!!! | AATACCTATAAATCATTTTT+AGG | + | chr2.4:27324564-27324583 | MS.gene92188:intron | 15.0% |
!! | AGTAGTTAGTAATGTTTAAT+TGG | + | chr2.4:27323838-27323857 | MS.gene92188:intron | 20.0% |
!! | ATTTCTGTAACAAAATCAAA+TGG | + | chr2.4:27323735-27323754 | MS.gene92188:intron | 20.0% |
!! | TATTCTAAACAAAAGAACAT+TGG | + | chr2.4:27324172-27324191 | MS.gene92188:intron | 20.0% |
!! | TCATAGAAATGAAGTTATAT+TGG | + | chr2.4:27325910-27325929 | MS.gene92188:intron | 20.0% |
!! | TCCAAAGATAAATATGATAA+GGG | + | chr2.4:27323616-27323635 | MS.gene92188:CDS | 20.0% |
!! | TTCCAAAGATAAATATGATA+AGG | + | chr2.4:27323615-27323634 | MS.gene92188:CDS | 20.0% |
!!! | AAAATGATTGCTTAATGTTT+TGG | - | chr2.4:27324511-27324530 | None:intergenic | 20.0% |
!!! | ACTTTTTGATTTTCCATTTA+TGG | - | chr2.4:27327003-27327022 | None:intergenic | 20.0% |
!!! | AGGGAAATTTTTATTAAGTA+AGG | + | chr2.4:27326405-27326424 | MS.gene92188:intron | 20.0% |
!!! | CATATCTTTATTTCAAATGT+AGG | + | chr2.4:27326775-27326794 | MS.gene92188:intron | 20.0% |
!!! | CTTTTTGATTTTCCATTTAT+GGG | - | chr2.4:27327002-27327021 | None:intergenic | 20.0% |
!!! | GCTGTTATATTTTCTTTTTA+CGG | + | chr2.4:27326219-27326238 | MS.gene92188:intron | 20.0% |
!!! | TGGATTTCATTTTTGTTAAT+GGG | + | chr2.4:27323943-27323962 | MS.gene92188:intron | 20.0% |
!!! | TGTTCCTTTTTTAATATGTT+TGG | - | chr2.4:27326649-27326668 | None:intergenic | 20.0% |
!!! | TTGGATTTCATTTTTGTTAA+TGG | + | chr2.4:27323942-27323961 | MS.gene92188:intron | 20.0% |
!!! | TTTTAATATGTTTGGATTTG+CGG | - | chr2.4:27326641-27326660 | None:intergenic | 20.0% |
! | AAAACCGATATGTAAAAAGA+AGG | - | chr2.4:27325123-27325142 | None:intergenic | 25.0% |
! | AAAATATAACAGCACCAAAA+AGG | - | chr2.4:27326212-27326231 | None:intergenic | 25.0% |
! | ACCCTTATCATATTTATCTT+TGG | - | chr2.4:27323620-27323639 | None:intergenic | 25.0% |
! | AGCATTATTAGTAGTAGTAT+TGG | - | chr2.4:27326131-27326150 | None:intergenic | 25.0% |
! | ATACTGGGTATTATAGATTA+TGG | + | chr2.4:27324866-27324885 | MS.gene92188:intron | 25.0% |
! | ATTAAGTAAGGTGACATTAA+TGG | + | chr2.4:27326417-27326436 | MS.gene92188:intron | 25.0% |
! | GACTACTTCATATAAATAAC+AGG | - | chr2.4:27326703-27326722 | None:intergenic | 25.0% |
! | GATACATGATTGTAAAACAA+AGG | - | chr2.4:27323897-27323916 | None:intergenic | 25.0% |
! | GATATTCTACATTATAGAAC+TGG | - | chr2.4:27324534-27324553 | None:intergenic | 25.0% |
! | GCATTATTAGTAGTAGTATT+GGG | - | chr2.4:27326130-27326149 | None:intergenic | 25.0% |
! | TAAAAAATGGCAGAATGAAA+AGG | - | chr2.4:27323306-27323325 | None:intergenic | 25.0% |
! | TAAATTTGATTCAGACTCTT+AGG | + | chr2.4:27323668-27323687 | MS.gene92188:intron | 25.0% |
! | TACTGGGTATTATAGATTAT+GGG | + | chr2.4:27324867-27324886 | MS.gene92188:intron | 25.0% |
! | TACTGTCTTAAAAATTGAGT+TGG | - | chr2.4:27325163-27325182 | None:intergenic | 25.0% |
! | TATAAACAAATTCAGCAGAA+AGG | - | chr2.4:27326303-27326322 | None:intergenic | 25.0% |
! | TATGTTTGATTGGATATACT+GGG | + | chr2.4:27324851-27324870 | MS.gene92188:intron | 25.0% |
! | TCCTAATTATAAACACTTCT+CGG | - | chr2.4:27325508-27325527 | None:intergenic | 25.0% |
! | TTACCAATTTACAAATGTCT+AGG | - | chr2.4:27324048-27324067 | None:intergenic | 25.0% |
! | TTATGTTTGATTGGATATAC+TGG | + | chr2.4:27324850-27324869 | MS.gene92188:intron | 25.0% |
! | TTCCAATACACAGTAAAAAA+TGG | - | chr2.4:27323319-27323338 | None:intergenic | 25.0% |
! | TTCTATAATGTAGAATATCC+AGG | + | chr2.4:27324535-27324554 | MS.gene92188:intron | 25.0% |
!! | ACAAAATCGATTTATAAGGT+GGG | - | chr2.4:27325577-27325596 | None:intergenic | 25.0% |
!! | ACCTTATAAGTCAATTTTGT+AGG | + | chr2.4:27325616-27325635 | MS.gene92188:intron | 25.0% |
!! | ATACTTTGTCCCATTAATTT+TGG | - | chr2.4:27324678-27324697 | None:intergenic | 25.0% |
!! | ATCAGAACATATCTAAGATA+AGG | + | chr2.4:27325182-27325201 | MS.gene92188:intron | 25.0% |
!! | GACATTTTATAATCATATGC+AGG | + | chr2.4:27325943-27325962 | MS.gene92188:intron | 25.0% |
!! | GTATCCTTCTTTTTACATAT+CGG | + | chr2.4:27325116-27325135 | MS.gene92188:intron | 25.0% |
!! | GTGATAAAAGATTTTTCTTC+TGG | - | chr2.4:27326158-27326177 | None:intergenic | 25.0% |
!! | TCAGAACATATCTAAGATAA+GGG | + | chr2.4:27325183-27325202 | MS.gene92188:intron | 25.0% |
!! | TTATTTATCTAGTGGTTTGT+TGG | + | chr2.4:27326743-27326762 | MS.gene92188:intron | 25.0% |
!!! | AAAAAAAGTACCTTCAGATT+CGG | - | chr2.4:27323259-27323278 | None:intergenic | 25.0% |
!!! | ACCTTATAAATCGATTTTGT+CGG | + | chr2.4:27325577-27325596 | MS.gene92188:intron | 25.0% |
!!! | AGACTTCTTTTGAAAAATTG+TGG | + | chr2.4:27326379-27326398 | MS.gene92188:intron | 25.0% |
!!! | TTTTGAAAAATTGTGGATGA+GGG | + | chr2.4:27326386-27326405 | MS.gene92188:intron | 25.0% |
!!! | TTTTTACATATCGGTTTTGT+AGG | + | chr2.4:27325125-27325144 | MS.gene92188:intron | 25.0% |
AAAATGTATTTCAAAGCAGG+AGG | + | chr2.4:27325094-27325113 | MS.gene92188:intron | 30.0% | |
AAGTTGAATTTGCAGTGAAA+TGG | - | chr2.4:27324734-27324753 | None:intergenic | 30.0% | |
AATACACCGATGATTCAAAA+GGG | - | chr2.4:27324776-27324795 | None:intergenic | 30.0% | |
ATACGCATAAATAGATTGTC+TGG | + | chr2.4:27323970-27323989 | MS.gene92188:intron | 30.0% | |
ATAGCAATAAGCTACCAAAA+GGG | + | chr2.4:27323807-27323826 | MS.gene92188:intron | 30.0% | |
ATATCCCAATCTTAGAAGTT+TGG | - | chr2.4:27325659-27325678 | None:intergenic | 30.0% | |
CAACCTAGACATTTGTAAAT+TGG | + | chr2.4:27324042-27324061 | MS.gene92188:intron | 30.0% | |
CAATTTACAAATGTCTAGGT+TGG | - | chr2.4:27324044-27324063 | None:intergenic | 30.0% | |
CAGCAAGTTTAACAAAATCA+CGG | + | chr2.4:27326538-27326557 | MS.gene92188:intron | 30.0% | |
CTGAAAATGTATTTCAAAGC+AGG | + | chr2.4:27325091-27325110 | MS.gene92188:intron | 30.0% | |
CTTGAATCGAATTACTATGA+AGG | + | chr2.4:27326953-27326972 | MS.gene92188:CDS | 30.0% | |
GATAATAGTCTGCTGTTATA+AGG | + | chr2.4:27324927-27324946 | MS.gene92188:intron | 30.0% | |
GTGATTGCTTTATGTTTGAT+TGG | + | chr2.4:27324841-27324860 | MS.gene92188:intron | 30.0% | |
TATAGCAATAAGCTACCAAA+AGG | + | chr2.4:27323806-27323825 | MS.gene92188:intron | 30.0% | |
TATCCCAATCTTAGAAGTTT+GGG | - | chr2.4:27325658-27325677 | None:intergenic | 30.0% | |
TGAAGTTGTATGTGTTGTAA+GGG | + | chr2.4:27325224-27325243 | MS.gene92188:intron | 30.0% | |
TGTTGAGGTTATTTATCTAG+TGG | + | chr2.4:27326735-27326754 | MS.gene92188:intron | 30.0% | |
TTGAATGTAGAATTCATGTC+AGG | + | chr2.4:27324371-27324390 | MS.gene92188:intron | 30.0% | |
TTGGAGATTTAACAAAACCA+CGG | - | chr2.4:27326569-27326588 | None:intergenic | 30.0% | |
TTTGTCAAAGCTTGGAATAA+AGG | + | chr2.4:27326926-27326945 | MS.gene92188:CDS | 30.0% | |
! | AAGCCTTATAAAGATTACGT+TGG | + | chr2.4:27325847-27325866 | MS.gene92188:intron | 30.0% |
! | ACATAAGTCAGATTCTAAGA+TGG | - | chr2.4:27325783-27325802 | None:intergenic | 30.0% |
! | ATGTCTATTGACTAGATCAT+TGG | - | chr2.4:27324332-27324351 | None:intergenic | 30.0% |
! | ATTTGGTATCAGATCCTTTT+TGG | + | chr2.4:27326195-27326214 | MS.gene92188:intron | 30.0% |
! | ATTTTTACAAACCATCCTTG+AGG | + | chr2.4:27326442-27326461 | MS.gene92188:intron | 30.0% |
! | CAATTTTGTAGGCTTAAGTT+AGG | + | chr2.4:27325627-27325646 | MS.gene92188:intron | 30.0% |
! | GACAAAATCGATTTATAAGG+TGG | - | chr2.4:27325578-27325597 | None:intergenic | 30.0% |
! | GCCTACAAAATTGACTTATA+AGG | - | chr2.4:27325620-27325639 | None:intergenic | 30.0% |
! | GTTTTTCTCTGATCTGTTAT+CGG | + | chr2.4:27326877-27326896 | MS.gene92188:CDS | 30.0% |
! | TATCACTATCTAGTTTGACA+TGG | + | chr2.4:27324207-27324226 | MS.gene92188:intron | 30.0% |
! | TTTTTACAAACCATCCTTGA+GGG | + | chr2.4:27326443-27326462 | MS.gene92188:intron | 30.0% |
!! | ACCTTATAAGTCGATTTTGT+CGG | + | chr2.4:27325538-27325557 | MS.gene92188:intron | 30.0% |
!! | CCTTATAAATCGATTTTGTC+GGG | + | chr2.4:27325578-27325597 | MS.gene92188:intron | 30.0% |
!! | CTTTTGAAAAATTGTGGATG+AGG | + | chr2.4:27326385-27326404 | MS.gene92188:intron | 30.0% |
!! | GAGAAGTGTTTATAATTAGG+AGG | + | chr2.4:27325507-27325526 | MS.gene92188:intron | 30.0% |
!! | GTTGTTTCTATAAGCTATCT+TGG | + | chr2.4:27323777-27323796 | MS.gene92188:intron | 30.0% |
!! | TAGGATTTTCAAGAATTGTC+CGG | + | chr2.4:27326794-27326813 | MS.gene92188:intron | 30.0% |
!! | TAGTGGTTTGTTGGTATTTA+TGG | + | chr2.4:27326752-27326771 | MS.gene92188:intron | 30.0% |
!! | TAGTTTTTCTAGGAATCAAG+AGG | + | chr2.4:27324266-27324285 | MS.gene92188:intron | 30.0% |
!! | TCCGAGAAGTGTTTATAATT+AGG | + | chr2.4:27325504-27325523 | MS.gene92188:intron | 30.0% |
!! | TTTTCAAACTGGTTTAGGTT+GGG | + | chr2.4:27324101-27324120 | MS.gene92188:intron | 30.0% |
!!! | AAGCAATGTTGTTTTCAAAC+TGG | + | chr2.4:27324090-27324109 | MS.gene92188:intron | 30.0% |
!!! | ATTTTTAGGTTTACTGCTTG+AGG | + | chr2.4:27324578-27324597 | MS.gene92188:intron | 30.0% |
!!! | CTGCTTTGAAATACATTTTC+AGG | - | chr2.4:27325093-27325112 | None:intergenic | 30.0% |
!!! | TGCCATTTTTTACTGTGTAT+TGG | + | chr2.4:27323314-27323333 | MS.gene92188:intron | 30.0% |
!!! | TGTTGTTTTCAAACTGGTTT+AGG | + | chr2.4:27324096-27324115 | MS.gene92188:intron | 30.0% |
AAACCAATCATTTCACTCCA+TGG | + | chr2.4:27324810-27324829 | MS.gene92188:intron | 35.0% | |
AAAGTTAGCTCAATGAGTGA+AGG | + | chr2.4:27325817-27325836 | MS.gene92188:intron | 35.0% | |
AGAGGGAAAAGAAAGAGAAA+AGG | + | chr2.4:27323578-27323597 | MS.gene92188:CDS | 35.0% | |
AGCCTCTTGTGTAAAAAACT+GGG | + | chr2.4:27325269-27325288 | MS.gene92188:intron | 35.0% | |
ATGATTCAAAAGGGAAAGAC+AGG | - | chr2.4:27324767-27324786 | None:intergenic | 35.0% | |
ATTTGCAAGACTACACACAT+AGG | + | chr2.4:27325018-27325037 | MS.gene92188:intron | 35.0% | |
CAATACACCGATGATTCAAA+AGG | - | chr2.4:27324777-27324796 | None:intergenic | 35.0% | |
CAGCAAAAGTGAAAGAAACA+TGG | + | chr2.4:27326087-27326106 | MS.gene92188:CDS | 35.0% | |
CTGATACCAAATATTCAGCA+TGG | - | chr2.4:27326187-27326206 | None:intergenic | 35.0% | |
CTTACAGTATACCAAATGGT+GGG | + | chr2.4:27325300-27325319 | MS.gene92188:intron | 35.0% | |
CTTGTGTAAAAAACTGGGTA+AGG | + | chr2.4:27325274-27325293 | MS.gene92188:intron | 35.0% | |
GAGCAAGGAAAAAACATGAA+AGG | + | chr2.4:27324605-27324624 | MS.gene92188:intron | 35.0% | |
GGAAAAGAAAGAGAAAAGGA+AGG | + | chr2.4:27323582-27323601 | MS.gene92188:CDS | 35.0% | |
GGTAGCAAACTCATTATTCT+TGG | - | chr2.4:27326834-27326853 | None:intergenic | 35.0% | |
GGTATTATAGATTATGGGTC+AGG | + | chr2.4:27324872-27324891 | MS.gene92188:intron | 35.0% | |
GTGAAGTTGTATGTGTTGTA+AGG | + | chr2.4:27325223-27325242 | MS.gene92188:intron | 35.0% | |
TCTGTTATGCTACTCATGAT+CGG | + | chr2.4:27325399-27325418 | MS.gene92188:intron | 35.0% | |
TGATAAAAAAAAAGGGCAGC+CGG | - | chr2.4:27325365-27325384 | None:intergenic | 35.0% | |
TGGCCAACGTAATCTTTATA+AGG | - | chr2.4:27325853-27325872 | None:intergenic | 35.0% | |
TTCTTGCCATGCTGAATATT+TGG | + | chr2.4:27326178-27326197 | MS.gene92188:intron | 35.0% | |
TTGCAGAATTTGTCAAAGCT+TGG | + | chr2.4:27326918-27326937 | MS.gene92188:CDS | 35.0% | |
TTTATAGGTATTTGCAAGCC+TGG | - | chr2.4:27324556-27324575 | None:intergenic | 35.0% | |
! | AACTGACAGTTCAAGAGTAT+AGG | + | chr2.4:27326341-27326360 | MS.gene92188:intron | 35.0% |
! | AACTGTAGATGATGATGATG+AGG | + | chr2.4:27323540-27323559 | MS.gene92188:CDS | 35.0% |
! | ACTATCTAGTTTGACATGGA+GGG | + | chr2.4:27324211-27324230 | MS.gene92188:intron | 35.0% |
! | ACTCATTGAGCTAACTTTTG+AGG | - | chr2.4:27325815-27325834 | None:intergenic | 35.0% |
! | AGCAATCACTAATTTTGCCA+TGG | - | chr2.4:27324830-27324849 | None:intergenic | 35.0% |
! | ATTAGTAGTAGTATTGGGAG+TGG | - | chr2.4:27326125-27326144 | None:intergenic | 35.0% |
! | CAAAAGAACATTGGTACTGA+AGG | + | chr2.4:27324181-27324200 | MS.gene92188:intron | 35.0% |
! | CCCGACAAAATCGATTTATA+AGG | - | chr2.4:27325581-27325600 | None:intergenic | 35.0% |
! | CTCATTGAGCTAACTTTTGA+GGG | - | chr2.4:27325814-27325833 | None:intergenic | 35.0% |
! | GTCTTTCCCTTTTGAATCAT+CGG | + | chr2.4:27324767-27324786 | MS.gene92188:intron | 35.0% |
! | TCTAGGACGTACTATGATAA+AGG | + | chr2.4:27325705-27325724 | MS.gene92188:intron | 35.0% |
! | TGGGACAAAGTATCTGTATA+AGG | + | chr2.4:27324685-27324704 | MS.gene92188:intron | 35.0% |
! | TGGGAGTTTGAACTTTTGTA+AGG | + | chr2.4:27324237-27324256 | MS.gene92188:intron | 35.0% |
! | TTAGTAGTAGTATTGGGAGT+GGG | - | chr2.4:27326124-27326143 | None:intergenic | 35.0% |
! | TTTTACAAACCATCCTTGAG+GGG | + | chr2.4:27326444-27326463 | MS.gene92188:intron | 35.0% |
! | TTTTCGCAAAAGCTATGCTT+TGG | - | chr2.4:27326588-27326607 | None:intergenic | 35.0% |
!! | AGAATAATGAGTTTGCTACC+TGG | + | chr2.4:27326834-27326853 | MS.gene92188:CDS | 35.0% |
!! | CAACCCAAACTTCTAAGATT+GGG | + | chr2.4:27325652-27325671 | MS.gene92188:intron | 35.0% |
!! | CCTTATAAGTCGATTTTGTC+GGG | + | chr2.4:27325539-27325558 | MS.gene92188:intron | 35.0% |
!! | GTTTTCAAACTGGTTTAGGT+TGG | + | chr2.4:27324100-27324119 | MS.gene92188:intron | 35.0% |
!! | TCAACCCAAACTTCTAAGAT+TGG | + | chr2.4:27325651-27325670 | MS.gene92188:intron | 35.0% |
!! | TTTCAAACTGGTTTAGGTTG+GGG | + | chr2.4:27324102-27324121 | MS.gene92188:intron | 35.0% |
!!! | AAGGCTATGCTAGTTTTTCT+AGG | + | chr2.4:27324256-27324275 | MS.gene92188:intron | 35.0% |
!!! | TACCCAGTTTTTTACACAAG+AGG | - | chr2.4:27325274-27325293 | None:intergenic | 35.0% |
AAAGGCAACACTGGTAAAAC+AGG | - | chr2.4:27326285-27326304 | None:intergenic | 40.0% | |
AATTTGCAGTGAAATGGCAC+AGG | - | chr2.4:27324728-27324747 | None:intergenic | 40.0% | |
AGCTACACTGAAGGTAATCT+AGG | + | chr2.4:27325688-27325707 | MS.gene92188:intron | 40.0% | |
AGGAAAAGAAGAGCAGAAAG+AGG | + | chr2.4:27323560-27323579 | MS.gene92188:CDS | 40.0% | |
AGGACGTACTATGATAAAGG+AGG | + | chr2.4:27325708-27325727 | MS.gene92188:intron | 40.0% | |
AGGAGTTAGTTAGAAGTCGT+TGG | + | chr2.4:27323923-27323942 | MS.gene92188:intron | 40.0% | |
ATTCTCCAAATGTCCAGTCT+TGG | + | chr2.4:27325429-27325448 | MS.gene92188:intron | 40.0% | |
ATTCTTCTCTTCTTTCAGCC+AGG | - | chr2.4:27326855-27326874 | None:intergenic | 40.0% | |
CAAAAGGGAAAGACAGGAAT+AGG | - | chr2.4:27324761-27324780 | None:intergenic | 40.0% | |
CAGATGAGAAGAAAAGCAAG+AGG | + | chr2.4:27323512-27323531 | MS.gene92188:intron | 40.0% | |
CAGCCTCTTGTGTAAAAAAC+TGG | + | chr2.4:27325268-27325287 | MS.gene92188:intron | 40.0% | |
CGGACCATATCTCATTGAAT+GGG | - | chr2.4:27325488-27325507 | None:intergenic | 40.0% | |
CGGTGAGTTTGATAGAATCA+AGG | - | chr2.4:27326621-27326640 | None:intergenic | 40.0% | |
CTGCTGTTATAAGGTCTACT+TGG | + | chr2.4:27324936-27324955 | MS.gene92188:intron | 40.0% | |
CTGTTATGCTACTCATGATC+GGG | + | chr2.4:27325400-27325419 | MS.gene92188:intron | 40.0% | |
CTTGGCAAAATAGTCATCAC+CGG | - | chr2.4:27326816-27326835 | None:intergenic | 40.0% | |
CTTTACATGTCCTATCCTAG+AGG | - | chr2.4:27324992-27325011 | None:intergenic | 40.0% | |
GCTGCTTACAGTATACCAAA+TGG | + | chr2.4:27325296-27325315 | MS.gene92188:intron | 40.0% | |
GCTGTGATTCCAAACATACA+CGG | - | chr2.4:27326522-27326541 | None:intergenic | 40.0% | |
GCTTACAGTATACCAAATGG+TGG | + | chr2.4:27325299-27325318 | MS.gene92188:intron | 40.0% | |
GGAAAAGAAGAGCAGAAAGA+GGG | + | chr2.4:27323561-27323580 | MS.gene92188:CDS | 40.0% | |
GGACCATATCTCATTGAATG+GGG | - | chr2.4:27325487-27325506 | None:intergenic | 40.0% | |
GTCAGAAACTGTGATTGTTG+AGG | + | chr2.4:27326720-27326739 | MS.gene92188:intron | 40.0% | |
GTTCCCCATTCAATGAGATA+TGG | + | chr2.4:27325481-27325500 | MS.gene92188:intron | 40.0% | |
TAACCCTAAAAGCAAGCTCA+AGG | + | chr2.4:27324901-27324920 | MS.gene92188:intron | 40.0% | |
TACAATCATGTATCAGCTGC+AGG | + | chr2.4:27323903-27323922 | MS.gene92188:intron | 40.0% | |
TCGGACCATATCTCATTGAA+TGG | - | chr2.4:27325489-27325508 | None:intergenic | 40.0% | |
TCTAGGAATCAAGAGGATAC+TGG | + | chr2.4:27324273-27324292 | MS.gene92188:intron | 40.0% | |
TCTATGAGATGCTAGCTCAA+TGG | - | chr2.4:27326483-27326502 | None:intergenic | 40.0% | |
TCTTACATTGACCAGTGATG+TGG | - | chr2.4:27325873-27325892 | None:intergenic | 40.0% | |
TTGAAGACTCCGTGTATGTT+TGG | + | chr2.4:27326510-27326529 | MS.gene92188:intron | 40.0% | |
TTGCCATGGAGTGAAATGAT+TGG | - | chr2.4:27324816-27324835 | None:intergenic | 40.0% | |
TTGTATGTGTTGTAAGGGCA+TGG | + | chr2.4:27325229-27325248 | MS.gene92188:intron | 40.0% | |
! | CACTATCTAGTTTGACATGG+AGG | + | chr2.4:27324210-27324229 | MS.gene92188:intron | 40.0% |
! | CCCGACAAAATCGACTTATA+AGG | - | chr2.4:27325542-27325561 | None:intergenic | 40.0% |
! | CGATTTTGTCGGGTTAAGTT+AGG | + | chr2.4:27325549-27325568 | MS.gene92188:intron | 40.0% |
! | TGTATGTGTTGTAAGGGCAT+GGG | + | chr2.4:27325230-27325249 | MS.gene92188:intron | 40.0% |
!! | ACTCCTTGAGCTTGCTTTTA+GGG | - | chr2.4:27324907-27324926 | None:intergenic | 40.0% |
!! | CGGTTTTGTAGGATTGAGTT+AGG | + | chr2.4:27325136-27325155 | MS.gene92188:intron | 40.0% |
AGGAGGTTACGATTCCGATA+TGG | + | chr2.4:27325725-27325744 | MS.gene92188:intron | 45.0% | |
AGGTGTGGAGAGTCTCATAT+TGG | + | chr2.4:27325056-27325075 | MS.gene92188:intron | 45.0% | |
AGTTTGACATGGAGGGTCTT+GGG | + | chr2.4:27324218-27324237 | MS.gene92188:intron | 45.0% | |
ATTCAGCAGAAAGGCAACAC+TGG | - | chr2.4:27326294-27326313 | None:intergenic | 45.0% | |
GCAACACTGGTAAAACAGGA+TGG | - | chr2.4:27326281-27326300 | None:intergenic | 45.0% | |
GCTTCTAGTAGCTACACTGA+AGG | + | chr2.4:27325679-27325698 | MS.gene92188:intron | 45.0% | |
GGTACCAATGTTTGCAGTCT+GGG | - | chr2.4:27325762-27325781 | None:intergenic | 45.0% | |
GTCCTATCCTAGAGGTGAAA+TGG | - | chr2.4:27324984-27325003 | None:intergenic | 45.0% | |
TAGTTTGACATGGAGGGTCT+TGG | + | chr2.4:27324217-27324236 | MS.gene92188:intron | 45.0% | |
TGAGATGCTAGCTCAATGGA+CGG | - | chr2.4:27326479-27326498 | None:intergenic | 45.0% | |
TGGTACCAATGTTTGCAGTC+TGG | - | chr2.4:27325763-27325782 | None:intergenic | 45.0% | |
! | ACTACTGACACAAGCCCTTT+TGG | - | chr2.4:27323824-27323843 | None:intergenic | 45.0% |
! | AGACTAACTGCAGGGGTTTT+GGG | + | chr2.4:27324302-27324321 | MS.gene92188:intron | 45.0% |
! | CAACATGCCATTTCACCTCT+AGG | + | chr2.4:27324974-27324993 | MS.gene92188:intron | 45.0% |
! | GAATCAAGAGGATACTGGCT+AGG | + | chr2.4:27324278-27324297 | MS.gene92188:intron | 45.0% |
! | TAGACTAACTGCAGGGGTTT+TGG | + | chr2.4:27324301-27324320 | MS.gene92188:intron | 45.0% |
! | TCTAAGATAAGGGAGAGCCT+TGG | + | chr2.4:27325193-27325212 | MS.gene92188:intron | 45.0% |
!! | CACTCCTTGAGCTTGCTTTT+AGG | - | chr2.4:27324908-27324927 | None:intergenic | 45.0% |
!! | TGCCATTTCACCTCTAGGAT+AGG | + | chr2.4:27324979-27324998 | MS.gene92188:intron | 45.0% |
!!! | ACTGCTTGAGGTTTTGAGCA+AGG | + | chr2.4:27324590-27324609 | MS.gene92188:intron | 45.0% |
AATGTCCAGTCTTGGACGTG+AGG | + | chr2.4:27325437-27325456 | MS.gene92188:intron | 50.0% | |
ACAAAGCTCCCACATACGCA+GGG | - | chr2.4:27325339-27325358 | None:intergenic | 50.0% | |
AGTTCGAATCCCCTCAAGGA+TGG | - | chr2.4:27326456-27326475 | None:intergenic | 50.0% | |
CACGTCCAAGACTGGACATT+TGG | - | chr2.4:27325437-27325456 | None:intergenic | 50.0% | |
CAGTGAAATGGCACAGGACA+AGG | - | chr2.4:27324722-27324741 | None:intergenic | 50.0% | |
CCTTCAGATTCGGATTGCGA+AGG | - | chr2.4:27323249-27323268 | None:intergenic | 50.0% | |
CCTTCGCAATCCGAATCTGA+AGG | + | chr2.4:27323246-27323265 | MS.gene92188:CDS | 50.0% | |
GAAATGGCACAGGACAAGGA+TGG | - | chr2.4:27324718-27324737 | None:intergenic | 50.0% | |
GAACTGTCAGTTGCAGCATG+TGG | - | chr2.4:27326333-27326352 | None:intergenic | 50.0% | |
GATTACGTTGGCCACATCAC+TGG | + | chr2.4:27325859-27325878 | MS.gene92188:intron | 50.0% | |
GCTAGGTAGACTAACTGCAG+GGG | + | chr2.4:27324295-27324314 | MS.gene92188:intron | 50.0% | |
GGCTAGGTAGACTAACTGCA+GGG | + | chr2.4:27324294-27324313 | MS.gene92188:intron | 50.0% | |
GGGAGACTCTGCTTCCATAT+CGG | - | chr2.4:27325742-27325761 | None:intergenic | 50.0% | |
GTCTCCCAGACTGCAAACAT+TGG | + | chr2.4:27325755-27325774 | MS.gene92188:intron | 50.0% | |
TACACACATAGGTTGCCCGA+CGG | + | chr2.4:27325029-27325048 | MS.gene92188:intron | 50.0% | |
TGGCTAGGTAGACTAACTGC+AGG | + | chr2.4:27324293-27324312 | MS.gene92188:intron | 50.0% | |
! | TATGTGGGAGCTTTGTGCAC+CGG | + | chr2.4:27325343-27325362 | MS.gene92188:intron | 50.0% |
! | TTCCATTTATGGGCTGTGCG+AGG | - | chr2.4:27326992-27327011 | None:intergenic | 50.0% |
!! | ACAAAATCACGGTGTCACCG+TGG | + | chr2.4:27326549-27326568 | MS.gene92188:intron | 50.0% |
ACAACTTCACCGTTGCGCCA+AGG | - | chr2.4:27325213-27325232 | None:intergenic | 55.0% | |
ACATACGCAGGGTCTGGCAA+GGG | - | chr2.4:27325328-27325347 | None:intergenic | 55.0% | |
ACCATCCTCACGTCCAAGAC+TGG | - | chr2.4:27325445-27325464 | None:intergenic | 55.0% | |
ACGGAGTTCGAATCCCCTCA+AGG | - | chr2.4:27326460-27326479 | None:intergenic | 55.0% | |
ATAGGTTGCCCGACGGATCT+AGG | + | chr2.4:27325036-27325055 | MS.gene92188:intron | 55.0% | |
CACAAAGCTCCCACATACGC+AGG | - | chr2.4:27325340-27325359 | None:intergenic | 55.0% | |
CTCTCCACACCTAGATCCGT+CGG | - | chr2.4:27325048-27325067 | None:intergenic | 55.0% | |
TCCAGTCTTGGACGTGAGGA+TGG | + | chr2.4:27325441-27325460 | MS.gene92188:intron | 55.0% | |
TCTCCACACCTAGATCCGTC+GGG | - | chr2.4:27325047-27325066 | None:intergenic | 55.0% | |
TTGCCAGACCCTGCGTATGT+GGG | + | chr2.4:27325328-27325347 | MS.gene92188:intron | 55.0% | |
AAGGGAGAGCCTTGGCGCAA+CGG | + | chr2.4:27325201-27325220 | MS.gene92188:intron | 60.0% | |
CACATACGCAGGGTCTGGCA+AGG | - | chr2.4:27325329-27325348 | None:intergenic | 60.0% | |
CATACGCAGGGTCTGGCAAG+GGG | - | chr2.4:27325327-27325346 | None:intergenic | 60.0% | |
CGCCTCGCACAGCCCATAAA+TGG | + | chr2.4:27326987-27327006 | MS.gene92188:CDS | 60.0% | |
CTTGCCAGACCCTGCGTATG+TGG | + | chr2.4:27325327-27325346 | MS.gene92188:intron | 60.0% | |
TGGCAAGGGGTCCCACCATT+TGG | - | chr2.4:27325314-27325333 | None:intergenic | 60.0% | |
TTGCCCGACGGATCTAGGTG+TGG | + | chr2.4:27325041-27325060 | MS.gene92188:intron | 60.0% | |
GCTCCCACATACGCAGGGTC+TGG | - | chr2.4:27325334-27325353 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 27323213 | 27327024 | 27323213 | ID=MS.gene92188 |
chr2.4 | mRNA | 27323213 | 27327024 | 27323213 | ID=MS.gene92188.t1;Parent=MS.gene92188 |
chr2.4 | exon | 27323213 | 27323267 | 27323213 | ID=MS.gene92188.t1.exon1;Parent=MS.gene92188.t1 |
chr2.4 | CDS | 27323213 | 27323267 | 27323213 | ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1 |
chr2.4 | exon | 27323515 | 27323637 | 27323515 | ID=MS.gene92188.t1.exon2;Parent=MS.gene92188.t1 |
chr2.4 | CDS | 27323515 | 27323637 | 27323515 | ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1 |
chr2.4 | exon | 27326053 | 27326108 | 27326053 | ID=MS.gene92188.t1.exon3;Parent=MS.gene92188.t1 |
chr2.4 | CDS | 27326053 | 27326108 | 27326053 | ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1 |
chr2.4 | exon | 27326797 | 27327024 | 27326797 | ID=MS.gene92188.t1.exon4;Parent=MS.gene92188.t1 |
chr2.4 | CDS | 27326797 | 27327024 | 27326797 | ID=cds.MS.gene92188.t1;Parent=MS.gene92188.t1 |
Gene Sequence |
Protein sequence |