Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95625.t1 | XP_013449168.1 | 100 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 3.20E-29 | 137.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95625.t1 | A0A072UBG8 | 100.0 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 2.3e-29 | 137.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene95625 | 0.808912 | 2.45E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene95625 | 0.818962 | 1.49E-52 | -1.69E-46 |
| MS.gene049343 | MS.gene95625 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene95625 | 0.820978 | 5.16E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene95625 | 0.822782 | 1.97E-53 | -1.69E-46 |
| MS.gene050355 | MS.gene95625 | 0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene95625 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene95625 | 0.815218 | 1.03E-51 | -1.69E-46 |
| MS.gene050905 | MS.gene95625 | -0.819601 | 1.07E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene95625 | 0.838869 | 2.23E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene95625 | 0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene95625 | 0.826697 | 2.35E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene95625 | 0.806202 | 9.22E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene95625 | 0.814213 | 1.73E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene95625 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene95625 | 0.803437 | 3.49E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene95625 | 0.806731 | 7.13E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene95625 | 0.817678 | 2.91E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene95625 | 0.83727 | 5.74E-57 | -1.69E-46 |
| MS.gene052012 | MS.gene95625 | 0.811137 | 8.14E-51 | -1.69E-46 |
| MS.gene052108 | MS.gene95625 | 0.815401 | 9.42E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene95625 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene95625 | 0.836295 | 1.02E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene95625 | 0.824338 | 8.52E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene95625 | 0.806443 | 8.20E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene95625 | 0.822098 | 2.84E-53 | -1.69E-46 |
| MS.gene053006 | MS.gene95625 | 0.855725 | 5.20E-62 | -1.69E-46 |
| MS.gene053008 | MS.gene95625 | 0.830683 | 2.56E-55 | -1.69E-46 |
| MS.gene053080 | MS.gene95625 | 0.806249 | 9.02E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene95625 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene95625 | 0.809432 | 1.90E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene95625 | 0.835504 | 1.61E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene95625 | 0.842231 | 2.93E-58 | -1.69E-46 |
| MS.gene054405 | MS.gene95625 | 0.828396 | 9.20E-55 | -1.69E-46 |
| MS.gene054582 | MS.gene95625 | 0.800471 | 1.42E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene95625 | 0.806551 | 7.79E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene95625 | 0.845464 | 4.00E-59 | -1.69E-46 |
| MS.gene054658 | MS.gene95625 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene95625 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene95625 | 0.800791 | 1.22E-48 | -1.69E-46 |
| MS.gene054994 | MS.gene95625 | 0.806895 | 6.59E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene95625 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene95625 | 0.864176 | 1.47E-64 | -1.69E-46 |
| MS.gene055222 | MS.gene95625 | 0.819058 | 1.42E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene95625 | 0.833859 | 4.19E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene95625 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene95625 | 0.8303 | 3.17E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene95625 | 0.839224 | 1.80E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene95625 | 0.80208 | 6.65E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene95625 | 0.822616 | 2.15E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene95625 | 0.803455 | 3.46E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene95625 | 0.806431 | 8.25E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene95625 | 0.815981 | 7.00E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene95625 | 0.812851 | 3.44E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene95625 | 0.834166 | 3.51E-56 | -1.69E-46 |
| MS.gene057026 | MS.gene95625 | 0.808461 | 3.06E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene95625 | 0.82669 | 2.36E-54 | -1.69E-46 |
| MS.gene057079 | MS.gene95625 | 0.811846 | 5.71E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene95625 | 0.867196 | 1.64E-65 | -1.69E-46 |
| MS.gene057392 | MS.gene95625 | 0.805307 | 1.42E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene95625 | 0.802194 | 6.30E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene95625 | 0.809382 | 1.95E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene95625 | 0.842881 | 1.97E-58 | -1.69E-46 |
| MS.gene05795 | MS.gene95625 | 0.810304 | 1.23E-50 | -1.69E-46 |
| MS.gene058009 | MS.gene95625 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene95625 | 0.805381 | 1.37E-49 | -1.69E-46 |
| MS.gene058088 | MS.gene95625 | 0.802785 | 4.76E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene95625 | 0.808508 | 2.99E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene95625 | 0.80916 | 2.17E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene95625 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene95625 | 0.83111 | 2.01E-55 | -1.69E-46 |
| MS.gene059151 | MS.gene95625 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene95625 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene059569 | MS.gene95625 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene05979 | MS.gene95625 | 0.834445 | 2.99E-56 | -1.69E-46 |
| MS.gene059830 | MS.gene95625 | 0.83757 | 4.81E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene95625 | 0.810797 | 9.64E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene95625 | 0.805474 | 1.31E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene95625 | 0.818259 | 2.15E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene95625 | 0.835233 | 1.89E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene95625 | 0.850612 | 1.52E-60 | -1.69E-46 |
| MS.gene060521 | MS.gene95625 | 0.807876 | 4.08E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene95625 | 0.847532 | 1.09E-59 | -1.69E-46 |
| MS.gene060586 | MS.gene95625 | 0.828644 | 8.01E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene95625 | 0.816332 | 5.84E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene95625 | 0.832428 | 9.51E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene95625 | 0.811909 | 5.53E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95625.t1 | MTR_7g068940 | 100.000 | 72 | 0 | 0 | 1 | 72 | 1 | 72 | 1.25e-48 | 147 |
| MS.gene95625.t1 | MTR_7g068940 | 97.872 | 47 | 1 | 0 | 1 | 47 | 1 | 47 | 1.14e-28 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95625.t1 | AT5G01350 | 55.882 | 68 | 30 | 0 | 2 | 69 | 3 | 70 | 2.46e-22 | 81.6 |
Find 10 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGGACATCAAAGAATA+TGG | 0.394875 | 7.4:-34635756 | MS.gene95625:CDS |
| ACTGCAAACCTCTGAAATGC+AGG | 0.473854 | 7.4:+34635776 | None:intergenic |
| CTCTTACTTTGTCAATGAAG+TGG | 0.484729 | 7.4:-34637902 | MS.gene95625:CDS |
| TTGTCAATGGTCTTGCCAAC+AGG | 0.492451 | 7.4:-34637879 | MS.gene95625:intron |
| GTCAATGAAGTGGTTGTCAA+TGG | 0.500920 | 7.4:-34637892 | MS.gene95625:CDS |
| TTCGCAGCCCTGCATTTCAG+AGG | 0.564752 | 7.4:-34635784 | MS.gene95625:intron |
| ACAAATGAAAGAATCACTGC+TGG | 0.590287 | 7.4:+34635486 | None:intergenic |
| CATTTCAGAGGTTTGCAGTG+AGG | 0.594381 | 7.4:-34635772 | MS.gene95625:CDS |
| AGAGTTAGCTGAGCAGCTGA+AGG | 0.595641 | 7.4:-34635625 | MS.gene95625:CDS |
| CTGCAAACCTCTGAAATGCA+GGG | 0.596012 | 7.4:+34635777 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATCATAAATACAATTATTA+GGG | + | chr7.4:34637415-34637434 | None:intergenic | 15.0% |
| !! | TGATCATAAATACAATTATT+AGG | + | chr7.4:34637416-34637435 | None:intergenic | 15.0% |
| !! | TGCTGTATTAATAATTATAT+TGG | + | chr7.4:34635927-34635946 | None:intergenic | 15.0% |
| !!! | AATATTTTCTATTTTCAGAT+AGG | - | chr7.4:34637204-34637223 | MS.gene95625:intron | 15.0% |
| !! | ATAAAATAAAAATCACCTGT+TGG | + | chr7.4:34635572-34635591 | None:intergenic | 20.0% |
| !! | ATAATTATTAATACAGCACA+GGG | - | chr7.4:34635929-34635948 | MS.gene95625:intron | 20.0% |
| !! | ATGGAAGAAATTTCAAAAAA+GGG | - | chr7.4:34637696-34637715 | MS.gene95625:intron | 20.0% |
| !! | CAAAAATGAGAATCTTATAT+GGG | + | chr7.4:34637464-34637483 | None:intergenic | 20.0% |
| !! | TATAATTATTAATACAGCAC+AGG | - | chr7.4:34635928-34635947 | MS.gene95625:intron | 20.0% |
| !! | TATGGAAGAAATTTCAAAAA+AGG | - | chr7.4:34637695-34637714 | MS.gene95625:intron | 20.0% |
| !!! | AAAATGATTTTAAGCCTATA+AGG | - | chr7.4:34636397-34636416 | MS.gene95625:intron | 20.0% |
| !!! | CTTTGTAACAATTATTTTCA+TGG | + | chr7.4:34637001-34637020 | None:intergenic | 20.0% |
| ! | AACATTAACATTAGAAGTGA+TGG | + | chr7.4:34637619-34637638 | None:intergenic | 25.0% |
| ! | AAGTTAACCATAGAAAAACT+TGG | - | chr7.4:34635816-34635835 | MS.gene95625:intron | 25.0% |
| ! | ACAATTATTAGGGAGAAAAT+TGG | + | chr7.4:34637405-34637424 | None:intergenic | 25.0% |
| ! | AGAAGTTGGATATCTTATTA+TGG | - | chr7.4:34636507-34636526 | MS.gene95625:intron | 25.0% |
| ! | ATATCTTATTATGGGTGTTA+GGG | - | chr7.4:34636516-34636535 | MS.gene95625:intron | 25.0% |
| ! | ATGAAAAATAGCTGAAAACT+AGG | - | chr7.4:34636605-34636624 | MS.gene95625:intron | 25.0% |
| ! | CAATTATTAGGGAGAAAATT+GGG | + | chr7.4:34637404-34637423 | None:intergenic | 25.0% |
| ! | CATAAGGAAGAATATGAAAA+AGG | + | chr7.4:34636811-34636830 | None:intergenic | 25.0% |
| ! | CTAATGTTAATGTTTCATTG+TGG | - | chr7.4:34637625-34637644 | MS.gene95625:intron | 25.0% |
| ! | CTCTAAGTTCACATTATTAT+TGG | - | chr7.4:34637487-34637506 | MS.gene95625:intron | 25.0% |
| ! | GAAGTTGGATATCTTATTAT+GGG | - | chr7.4:34636508-34636527 | MS.gene95625:intron | 25.0% |
| ! | GCAAAAATGAGAATCTTATA+TGG | + | chr7.4:34637465-34637484 | None:intergenic | 25.0% |
| ! | TGAAAAATAGCTGAAAACTA+GGG | - | chr7.4:34636606-34636625 | MS.gene95625:intron | 25.0% |
| ! | TTAGAAATCAGAACATACAT+AGG | - | chr7.4:34636449-34636468 | MS.gene95625:intron | 25.0% |
| !! | CACATTATTATTGGCTATTA+AGG | - | chr7.4:34637496-34637515 | MS.gene95625:intron | 25.0% |
| !! | CTATTGTTGTTCTTAAATTC+TGG | + | chr7.4:34636543-34636562 | None:intergenic | 25.0% |
| !! | GAACTTGCAAAATCTTTTAT+GGG | + | chr7.4:34636691-34636710 | None:intergenic | 25.0% |
| !! | GTTTATCGTTTTGTGATAAA+TGG | - | chr7.4:34636348-34636367 | MS.gene95625:intron | 25.0% |
| !! | TTAGTTTCTTTAAGCCTTAT+AGG | + | chr7.4:34636414-34636433 | None:intergenic | 25.0% |
| !! | TTTACAGTTTTTGCTACAAT+AGG | - | chr7.4:34637373-34637392 | MS.gene95625:intron | 25.0% |
| !!! | AAACATCATTAGTTGATGAT+TGG | - | chr7.4:34635765-34635784 | MS.gene95625:CDS | 25.0% |
| !!! | ATGTATTACCTCCATTTTTT+TGG | + | chr7.4:34637840-34637859 | None:intergenic | 25.0% |
| !!! | CTTCAACAGTTTTAAAGTAA+AGG | + | chr7.4:34636029-34636048 | None:intergenic | 25.0% |
| !!! | CTTTACTTTAAAACTGTTGA+AGG | - | chr7.4:34636027-34636046 | MS.gene95625:intron | 25.0% |
| !!! | TGTATTACCTCCATTTTTTT+GGG | + | chr7.4:34637839-34637858 | None:intergenic | 25.0% |
| AAAAGACAACAGAAAGAAGT+TGG | - | chr7.4:34636493-34636512 | MS.gene95625:intron | 30.0% | |
| AAGGTGATCTTTATCAGTAT+CGG | + | chr7.4:34636010-34636029 | None:intergenic | 30.0% | |
| AATTCAAAAGCAGGAAAACT+TGG | + | chr7.4:34637532-34637551 | None:intergenic | 30.0% | |
| AGAATCTTATATGGGATGAA+TGG | + | chr7.4:34637456-34637475 | None:intergenic | 30.0% | |
| AGACCAAATTAGAGTAGTTT+AGG | - | chr7.4:34637107-34637126 | MS.gene95625:intron | 30.0% | |
| AGAGTTATATAGGAATGTTC+AGG | + | chr7.4:34636734-34636753 | None:intergenic | 30.0% | |
| ATTGATACCTATAACAGTCA+CGG | + | chr7.4:34636229-34636248 | None:intergenic | 30.0% | |
| CATTCTATGACATTGTCATT+AGG | - | chr7.4:34635857-34635876 | MS.gene95625:intron | 30.0% | |
| CTGTTATAGGTATCAATCTT+AGG | - | chr7.4:34636232-34636251 | MS.gene95625:intron | 30.0% | |
| CTTCAAAGCACAATGAAAAT+TGG | + | chr7.4:34637089-34637108 | None:intergenic | 30.0% | |
| GATATCTTATTATGGGTGTT+AGG | - | chr7.4:34636515-34636534 | MS.gene95625:intron | 30.0% | |
| GTATGTTCTGATTTCTAACT+TGG | + | chr7.4:34636447-34636466 | None:intergenic | 30.0% | |
| TATTGACCATGTGAACAAAT+CGG | - | chr7.4:34637744-34637763 | MS.gene95625:intron | 30.0% | |
| TCCACCAAAATCTAAGAAAT+TGG | + | chr7.4:34635645-34635664 | None:intergenic | 30.0% | |
| TCCTTAGATAATTCAAAAGC+AGG | + | chr7.4:34637541-34637560 | None:intergenic | 30.0% | |
| TCTCAACTCTCTAATATTGA+CGG | + | chr7.4:34636961-34636980 | None:intergenic | 30.0% | |
| TTCAAAAGAAGGAATCTGAT+TGG | - | chr7.4:34636900-34636919 | MS.gene95625:intron | 30.0% | |
| ! | AATTATATTGGCTGCAAAAG+TGG | + | chr7.4:34635915-34635934 | None:intergenic | 30.0% |
| ! | ATAGGACGTTTTTCTCTTAA+TGG | - | chr7.4:34637222-34637241 | MS.gene95625:intron | 30.0% |
| ! | CAAAATCTTTTATGGGAACA+GGG | + | chr7.4:34636684-34636703 | None:intergenic | 30.0% |
| ! | GACTCCAATTTCTTAGATTT+TGG | - | chr7.4:34635638-34635657 | MS.gene95625:CDS | 30.0% |
| ! | GGAACTTGCAAAATCTTTTA+TGG | + | chr7.4:34636692-34636711 | None:intergenic | 30.0% |
| ! | TCCAATTTCTTAGATTTTGG+TGG | - | chr7.4:34635641-34635660 | MS.gene95625:CDS | 30.0% |
| ! | TTGATGATTGGTGTGAAAAA+TGG | - | chr7.4:34635777-34635796 | MS.gene95625:CDS | 30.0% |
| !! | GTTTGACTTTTGTGTTATTC+TGG | - | chr7.4:34637766-34637785 | MS.gene95625:intron | 30.0% |
| !! | TCCTGCTTTTGAATTATCTA+AGG | - | chr7.4:34637537-34637556 | MS.gene95625:intron | 30.0% |
| AAAGACGGTTGATCATATGA+AGG | + | chr7.4:34637299-34637318 | None:intergenic | 35.0% | |
| AAGGTTGTTCCAATTAAGAG+AGG | - | chr7.4:34635605-34635624 | MS.gene95625:CDS | 35.0% | |
| AGGTCCTAATATGGATTCAA+AGG | + | chr7.4:34636859-34636878 | None:intergenic | 35.0% | |
| AGGTTGTTCCAATTAAGAGA+GGG | - | chr7.4:34635606-34635625 | MS.gene95625:CDS | 35.0% | |
| AGTCCAATAGTTAGAGATAG+AGG | + | chr7.4:34637274-34637293 | None:intergenic | 35.0% | |
| AGTGAGGACATCAAAGAATA+TGG | - | chr7.4:34637677-34637696 | MS.gene95625:intron | 35.0% | |
| CATAGAACCATATGCAAAGA+CGG | + | chr7.4:34637314-34637333 | None:intergenic | 35.0% | |
| CCATAGAAAAACTTGGCATT+AGG | - | chr7.4:34635823-34635842 | MS.gene95625:intron | 35.0% | |
| CCTAATATGGATTCAAAGGT+AGG | + | chr7.4:34636855-34636874 | None:intergenic | 35.0% | |
| CCTACCTTTGAATCCATATT+AGG | - | chr7.4:34636852-34636871 | MS.gene95625:intron | 35.0% | |
| CTCTTACTTTGTCAATGAAG+TGG | - | chr7.4:34635531-34635550 | MS.gene95625:intron | 35.0% | |
| GAGCCTAAACTACTCTAATT+TGG | + | chr7.4:34637113-34637132 | None:intergenic | 35.0% | |
| GGTGTGAAAAATGGAAAACT+TGG | - | chr7.4:34635786-34635805 | MS.gene95625:intron | 35.0% | |
| GTCCAATAGTTAGAGATAGA+GGG | + | chr7.4:34637273-34637292 | None:intergenic | 35.0% | |
| TAACCAAATTGAGCAGCATA+TGG | + | chr7.4:34636764-34636783 | None:intergenic | 35.0% | |
| TAGGTATCAATCTTAGGTAG+TGG | - | chr7.4:34636238-34636257 | MS.gene95625:intron | 35.0% | |
| TCTATGACATTGTCATTAGG+TGG | - | chr7.4:34635860-34635879 | MS.gene95625:intron | 35.0% | |
| TGGCTGAAAGAGAGTTATAT+AGG | + | chr7.4:34636744-34636763 | None:intergenic | 35.0% | |
| ! | AAACTGTAAAGTGCCATCTT+AGG | + | chr7.4:34637363-34637382 | None:intergenic | 35.0% |
| ! | CCTAATGCCAAGTTTTTCTA+TGG | + | chr7.4:34635826-34635845 | None:intergenic | 35.0% |
| ! | GCAAAATCTTTTATGGGAAC+AGG | + | chr7.4:34636685-34636704 | None:intergenic | 35.0% |
| ! | GTAAGAGCATAGACAACAAT+AGG | - | chr7.4:34637057-34637076 | MS.gene95625:intron | 35.0% |
| ! | GTCTTTGCATATGGTTCTAT+GGG | - | chr7.4:34637313-34637332 | MS.gene95625:intron | 35.0% |
| ! | TATGAAAAAGGAGCATGATG+AGG | + | chr7.4:34636799-34636818 | None:intergenic | 35.0% |
| ! | TCAATCTTAGGTAGTGGTAT+TGG | - | chr7.4:34636244-34636263 | MS.gene95625:intron | 35.0% |
| !! | AGTAGTTTAGGCTCTAAACT+AGG | - | chr7.4:34637119-34637138 | MS.gene95625:intron | 35.0% |
| !! | TGATCTTTATCAGTATCGGT+AGG | + | chr7.4:34636006-34636025 | None:intergenic | 35.0% |
| !!! | TGGTGGCAATTTTTTGCATA+GGG | - | chr7.4:34635504-34635523 | MS.gene95625:intron | 35.0% |
| !!! | TTACCTCCATTTTTTTGGGA+AGG | + | chr7.4:34637835-34637854 | None:intergenic | 35.0% |
| ACTAGGTGGAATAGGCTTTA+TGG | - | chr7.4:34637169-34637188 | MS.gene95625:intron | 40.0% | |
| AGCATTGCTCTGTGTCATAA+AGG | + | chr7.4:34636643-34636662 | None:intergenic | 40.0% | |
| ATGTGTGGAAGGTTTGCATA+AGG | + | chr7.4:34636827-34636846 | None:intergenic | 40.0% | |
| CAGGGTAATAAGTTCTCTCA+AGG | + | chr7.4:34636666-34636685 | None:intergenic | 40.0% | |
| CTATTCCACCTAGTAGGATA+AGG | + | chr7.4:34637163-34637182 | None:intergenic | 40.0% | |
| CTCCCTCTATCTCTAACTAT+TGG | - | chr7.4:34637268-34637287 | MS.gene95625:intron | 40.0% | |
| CTTATCCTACTAGGTGGAAT+AGG | - | chr7.4:34637161-34637180 | MS.gene95625:intron | 40.0% | |
| GAAGGACCTTCCCAAAAAAA+TGG | - | chr7.4:34637826-34637845 | MS.gene95625:intron | 40.0% | |
| GTCAATGAAGTGGTTGTCAA+TGG | - | chr7.4:34635541-34635560 | MS.gene95625:intron | 40.0% | |
| GTGATGGTAATAAGCACACA+AGG | + | chr7.4:34637603-34637622 | None:intergenic | 40.0% | |
| TAAAGCCTATTCCACCTAGT+AGG | + | chr7.4:34637169-34637188 | None:intergenic | 40.0% | |
| TGAATCCATATTAGGACCTC+TGG | - | chr7.4:34636860-34636879 | MS.gene95625:intron | 40.0% | |
| TGATCAACCGTCTTTGCATA+TGG | - | chr7.4:34637304-34637323 | MS.gene95625:intron | 40.0% | |
| TGTTCCAATTAAGAGAGGGA+GGG | - | chr7.4:34635610-34635629 | MS.gene95625:CDS | 40.0% | |
| TGTTTCTCCGTGACTGTTAT+AGG | - | chr7.4:34636219-34636238 | MS.gene95625:intron | 40.0% | |
| TTGTTCCAATTAAGAGAGGG+AGG | - | chr7.4:34635609-34635628 | MS.gene95625:CDS | 40.0% | |
| TTTGAACCCATCTACGTTGT+AGG | + | chr7.4:34636886-34636905 | None:intergenic | 40.0% | |
| ! | ACGTAGATGGGTTCAAAAGA+AGG | - | chr7.4:34636889-34636908 | MS.gene95625:intron | 40.0% |
| ! | ATTGGCTATTAAGGTGCTCA+TGG | - | chr7.4:34637505-34637524 | MS.gene95625:intron | 40.0% |
| ! | CAACTAAGCCTTATCCTACT+AGG | - | chr7.4:34637152-34637171 | MS.gene95625:intron | 40.0% |
| ! | CGTCTTTGCATATGGTTCTA+TGG | - | chr7.4:34637312-34637331 | MS.gene95625:intron | 40.0% |
| ! | TTGGCTATTAAGGTGCTCAT+GGG | - | chr7.4:34637506-34637525 | MS.gene95625:intron | 40.0% |
| !! | AAGGAATCTGATTGGTTCTG+TGG | - | chr7.4:34636908-34636927 | MS.gene95625:intron | 40.0% |
| !! | ATCAGTATCGGTAGGAACAA+GGG | + | chr7.4:34635998-34636017 | None:intergenic | 40.0% |
| !! | GTCAAACCGATTTGTTCACA+TGG | + | chr7.4:34637753-34637772 | None:intergenic | 40.0% |
| !! | TATCAGTATCGGTAGGAACA+AGG | + | chr7.4:34635999-34636018 | None:intergenic | 40.0% |
| !!! | CTGGTGGCAATTTTTTGCAT+AGG | - | chr7.4:34635503-34635522 | MS.gene95625:intron | 40.0% |
| AAAATCGATGTTCCCCCTCA+GGG | - | chr7.4:34635960-34635979 | MS.gene95625:intron | 45.0% | |
| AAGTGCCATCTTAGGTGGTT+CGG | + | chr7.4:34637355-34637374 | None:intergenic | 45.0% | |
| ACGAGCATGTGAATCTAACG+AGG | + | chr7.4:34635731-34635750 | None:intergenic | 45.0% | |
| AGTGAGTGAGCATATCAGCA+CGG | + | chr7.4:34636134-34636153 | None:intergenic | 45.0% | |
| CAGCCATATGCTGCTCAATT+TGG | - | chr7.4:34636758-34636777 | MS.gene95625:intron | 45.0% | |
| CATTGTCATTAGGTGGCTTG+TGG | - | chr7.4:34635867-34635886 | MS.gene95625:intron | 45.0% | |
| CATTTCAGAGGTTTGCAGTG+AGG | - | chr7.4:34637661-34637680 | MS.gene95625:intron | 45.0% | |
| GGACCTTCCCAAAAAAATGG+AGG | - | chr7.4:34637829-34637848 | MS.gene95625:intron | 45.0% | |
| GGAGAGAGAGGAATCATTCT+AGG | + | chr7.4:34636713-34636732 | None:intergenic | 45.0% | |
| GGTATGGTTTCAAACCCTGA+GGG | + | chr7.4:34635977-34635996 | None:intergenic | 45.0% | |
| GTATGGTTTCAAACCCTGAG+GGG | + | chr7.4:34635976-34635995 | None:intergenic | 45.0% | |
| TAAAATCGATGTTCCCCCTC+AGG | - | chr7.4:34635959-34635978 | MS.gene95625:intron | 45.0% | |
| TAGGAATGTTCAGGAGAGAG+AGG | + | chr7.4:34636725-34636744 | None:intergenic | 45.0% | |
| TATCGGTAGGAACAAGGGTA+TGG | + | chr7.4:34635993-34636012 | None:intergenic | 45.0% | |
| TATGGATTCAAAGGTAGGCC+TGG | + | chr7.4:34636850-34636869 | None:intergenic | 45.0% | |
| TATGGTTTCAAACCCTGAGG+GGG | + | chr7.4:34635975-34635994 | None:intergenic | 45.0% | |
| ! | CTAAGCCTTATCCTACTAGG+TGG | - | chr7.4:34637155-34637174 | MS.gene95625:intron | 45.0% |
| ! | CTGTAAAGTGCCATCTTAGG+TGG | + | chr7.4:34637360-34637379 | None:intergenic | 45.0% |
| ! | GAAAAAGGAGCATGATGAGG+TGG | + | chr7.4:34636796-34636815 | None:intergenic | 45.0% |
| ! | TTGTCAATGGTCTTGCCAAC+AGG | - | chr7.4:34635554-34635573 | MS.gene95625:intron | 45.0% |
| !! | ACTGCAAACCTCTGAAATGC+AGG | + | chr7.4:34637660-34637679 | None:intergenic | 45.0% |
| !! | CTGCAAACCTCTGAAATGCA+GGG | + | chr7.4:34637659-34637678 | None:intergenic | 45.0% |
| !! | CTTTTGACTCACGCATCTGT+TGG | - | chr7.4:34636184-34636203 | MS.gene95625:intron | 45.0% |
| !!! | TTTTATTTTTTTGAAATTTA+AGG | - | chr7.4:34635586-34635605 | MS.gene95625:intron | 5.0% |
| AGAGTTAGCTGAGCAGCTGA+AGG | - | chr7.4:34637808-34637827 | MS.gene95625:intron | 50.0% | |
| CATGTCCGAACCACCTAAGA+TGG | - | chr7.4:34637347-34637366 | MS.gene95625:intron | 50.0% | |
| CTCTCCCTCCCTCTCTTAAT+TGG | + | chr7.4:34635617-34635636 | None:intergenic | 50.0% | |
| CTCTGGCCTACAACGTAGAT+GGG | - | chr7.4:34636877-34636896 | MS.gene95625:intron | 50.0% | |
| CTGATGACAAACACGAGGCT+TGG | + | chr7.4:34636088-34636107 | None:intergenic | 50.0% | |
| GGGTATGGTTTCAAACCCTG+AGG | + | chr7.4:34635978-34635997 | None:intergenic | 50.0% | |
| GTAGGCCAGAGGTCCTAATA+TGG | + | chr7.4:34636868-34636887 | None:intergenic | 50.0% | |
| GTGAGTGAGCATATCAGCAC+GGG | + | chr7.4:34636133-34636152 | None:intergenic | 50.0% | |
| GTGGTGCAATGCATAAGCTG+CGG | + | chr7.4:34635896-34635915 | None:intergenic | 50.0% | |
| TGCAAACCTTCCACACATCC+AGG | - | chr7.4:34636829-34636848 | MS.gene95625:intron | 50.0% | |
| ! | GTGTGCTGATGACAAACACG+AGG | + | chr7.4:34636093-34636112 | None:intergenic | 50.0% |
| AGCAGACTGCAGAGGCAGAA+GGG | - | chr7.4:34636933-34636952 | MS.gene95625:intron | 55.0% | |
| CAAAGGTAGGCCTGGATGTG+TGG | + | chr7.4:34636842-34636861 | None:intergenic | 55.0% | |
| CAGACGCAAGACTTGCAAGG+GGG | + | chr7.4:34636064-34636083 | None:intergenic | 55.0% | |
| CCAGACGCAAGACTTGCAAG+GGG | + | chr7.4:34636065-34636084 | None:intergenic | 55.0% | |
| CCATCTACGTTGTAGGCCAG+AGG | + | chr7.4:34636879-34636898 | None:intergenic | 55.0% | |
| CCTCTGGCCTACAACGTAGA+TGG | - | chr7.4:34636876-34636895 | MS.gene95625:intron | 55.0% | |
| GAGCATGATGAGGTGGCAAG+GGG | + | chr7.4:34636789-34636808 | None:intergenic | 55.0% | |
| GCCAGACGCAAGACTTGCAA+GGG | + | chr7.4:34636066-34636085 | None:intergenic | 55.0% | |
| GGAGCATGATGAGGTGGCAA+GGG | + | chr7.4:34636790-34636809 | None:intergenic | 55.0% | |
| GTCATCAGCACACCCTCTAC+TGG | - | chr7.4:34636100-34636119 | MS.gene95625:intron | 55.0% | |
| GTGCAATGCATAAGCTGCGG+CGG | + | chr7.4:34635893-34635912 | None:intergenic | 55.0% | |
| TTCGCAGCCCTGCATTTCAG+AGG | - | chr7.4:34637649-34637668 | MS.gene95625:intron | 55.0% | |
| ! | AGGAGCATGATGAGGTGGCA+AGG | + | chr7.4:34636791-34636810 | None:intergenic | 55.0% |
| CAGCAGACTGCAGAGGCAGA+AGG | - | chr7.4:34636932-34636951 | MS.gene95625:intron | 60.0% | |
| CCCCTTGCAAGTCTTGCGTC+TGG | - | chr7.4:34636062-34636081 | MS.gene95625:intron | 60.0% | |
| CTTCTGCCTCTGCAGTCTGC+TGG | + | chr7.4:34636934-34636953 | None:intergenic | 60.0% | |
| GGCCAGACGCAAGACTTGCA+AGG | + | chr7.4:34636067-34636086 | None:intergenic | 60.0% | |
| GGTAGGCCTGGATGTGTGGA+AGG | + | chr7.4:34636838-34636857 | None:intergenic | 60.0% | |
| TCAGCACACCCTCTACTGGC+TGG | - | chr7.4:34636104-34636123 | MS.gene95625:intron | 60.0% | |
| ! | ACGGGTTGCCAGCCAGTAGA+GGG | + | chr7.4:34636115-34636134 | None:intergenic | 60.0% |
| CTGTGGCCAGCAGACTGCAG+AGG | - | chr7.4:34636925-34636944 | MS.gene95625:intron | 65.0% | |
| ! | CACGGGTTGCCAGCCAGTAG+AGG | + | chr7.4:34636116-34636135 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34635499 | 34637956 | 34635499 | ID=MS.gene95625 |
| chr7.4 | mRNA | 34635499 | 34637956 | 34635499 | ID=MS.gene95625.t1;Parent=MS.gene95625 |
| chr7.4 | exon | 34637880 | 34637956 | 34637880 | ID=MS.gene95625.t1.exon1;Parent=MS.gene95625.t1 |
| chr7.4 | CDS | 34637880 | 34637956 | 34637880 | ID=cds.MS.gene95625.t1;Parent=MS.gene95625.t1 |
| chr7.4 | exon | 34635738 | 34635799 | 34635738 | ID=MS.gene95625.t1.exon2;Parent=MS.gene95625.t1 |
| chr7.4 | CDS | 34635738 | 34635799 | 34635738 | ID=cds.MS.gene95625.t1;Parent=MS.gene95625.t1 |
| chr7.4 | exon | 34635605 | 34635663 | 34635605 | ID=MS.gene95625.t1.exon3;Parent=MS.gene95625.t1 |
| chr7.4 | CDS | 34635605 | 34635663 | 34635605 | ID=cds.MS.gene95625.t1;Parent=MS.gene95625.t1 |
| chr7.4 | exon | 34635499 | 34635519 | 34635499 | ID=MS.gene95625.t1.exon4;Parent=MS.gene95625.t1 |
| chr7.4 | CDS | 34635499 | 34635519 | 34635499 | ID=cds.MS.gene95625.t1;Parent=MS.gene95625.t1 |
| Gene Sequence |
| Protein sequence |
