AlfalfaGEDB | MS.gene074606

M. sativa cultivar XinJiangDaYe / MS.gene074606

KEGG: K12858
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074606.t1	XP_013458671.1	100	59	0	0	69	127	648	706	3.20E-24	121.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074606.t1	Q53RK8	80.3	61	12	0	66	126	674	734	5.2e-23	108.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074606.t1	A0A072UUE3	100.0	59	0	0	69	127	648	706	2.3e-24	121.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene074606	0.834959	2.22E-56	-1.69E-46
MS.gene049254	MS.gene074606	0.808794	2.60E-50	-1.69E-46
MS.gene049255	MS.gene074606	0.832414	9.58E-56	-1.69E-46
MS.gene049343	MS.gene074606	0.829346	5.42E-55	-1.69E-46
MS.gene049452	MS.gene074606	0.805202	1.50E-49	-1.69E-46
MS.gene049821	MS.gene074606	0.806171	9.37E-50	-1.69E-46
MS.gene049825	MS.gene074606	0.815458	9.15E-52	-1.69E-46
MS.gene049873	MS.gene074606	0.844765	6.17E-59	-1.69E-46
MS.gene050355	MS.gene074606	0.812373	4.38E-51	-1.69E-46
MS.gene050689	MS.gene074606	0.814733	1.33E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074606.t1	MTR_4g134170	100.000	59	0	0	69	127	648	706	2.60e-36	130
MS.gene074606.t1	MTR_6g005320	96.610	59	2	0	69	127	608	666	1.68e-34	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074606.t1	AT2G33730	78.947	57	12	0	69	125	675	731	5.95e-28	107
MS.gene074606.t1	AT1G28180	79.167	48	10	0	69	116	317	364	3.88e-19	81.6

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Find 39 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGTCATTTCGCCT+AGG	0.628001	8.4:+572242	None:intergenic
AAATGTACACCCATCGTATT+GGG	0.397102	8.4:-572440	MS.gene074606:CDS
AACAAGCACATTATATCTCT+TGG	0.438220	8.4:+572542	None:intergenic
AATAGATCCTGGCTTGAATT+TGG	0.231521	8.4:+572277	None:intergenic
ACAGTGTCATTTCGCCTAGG+TGG	0.641491	8.4:+572245	None:intergenic
ACCAGTACGCCCAATACGAT+GGG	0.574501	8.4:+572431	None:intergenic
ACCCATCGTATTGGGCGTAC+TGG	0.502956	8.4:-572432	MS.gene074606:CDS
ACTGGTCGTGCAGGAAAGAC+GGG	0.527412	8.4:-572414	MS.gene074606:CDS
AGATTTGTCTTGAAGGATTT+AGG	0.252142	8.4:-572566	MS.gene074606:CDS
AGGGAAATCACAGGATCAGA+GGG	0.612491	8.4:-572589	MS.gene074606:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGCACATTATATCTCT+TGG	+	chr8.4:572286-572305	None:intergenic	30.0%
AGATTTGTCTTGAAGGATTT+AGG	-	chr8.4:572259-572278	MS.gene074606:CDS	30.0%
TTATCAACTATGATATGCCT+GGG	-	chr8.4:572355-572374	MS.gene074606:CDS	30.0%
AAATGTACACCCATCGTATT+GGG	-	chr8.4:572385-572404	MS.gene074606:CDS	35.0%
GTGTACATTTCAATATTCCC+AGG	+	chr8.4:572375-572394	None:intergenic	35.0%
GTTATCAACTATGATATGCC+TGG	-	chr8.4:572354-572373	MS.gene074606:CDS	35.0%
GAAATGTACACCCATCGTAT+TGG	-	chr8.4:572384-572403	MS.gene074606:CDS	40.0%
TACAACATTCCTGACTCTTC+AGG	-	chr8.4:572441-572460	MS.gene074606:CDS	40.0%
AGGGAAATCACAGGATCAGA+GGG	-	chr8.4:572236-572255	MS.gene074606:CDS	45.0%
CAGAGGGAGATTTGTCTTGA+AGG	-	chr8.4:572252-572271	MS.gene074606:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	572232	572615	572232	ID=MS.gene074606
chr8.4	mRNA	572232	572615	572232	ID=MS.gene074606.t1;Parent=MS.gene074606
chr8.4	exon	572232	572615	572232	ID=MS.gene074606.t1.exon1;Parent=MS.gene074606.t1
chr8.4	CDS	572232	572615	572232	ID=cds.MS.gene074606.t1;Parent=MS.gene074606.t1

Gene Sequence

>MS.gene074606

ATGGAGGGAAATCACAGGATCAGAGGGAGATTTGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACTGATGTTGCTGGACGTGGTATTGACATTCCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTCGTGGCTACAACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGAACTTAAGCAGATGCTCATTCAAAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCCGACAGACCACCTAGGCGAAATGACACTGTTTTTGCCCATTAG

Protein sequence

>MS.gene074606.t1

MEGNHRIRGRFVLKDLGPRDIMCLLQLMLLDVVLTFLMWLMLSTMICLGILKCTPIVLGVLVVQERRVVATTFLTLQDTDVFYELKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH