AlfalfaGEDB | MS.gene061806

M. sativa cultivar XinJiangDaYe / MS.gene061806

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061806.t1	XP_013446772.1	86	286	30	2	1	276	1	286	8.40E-119	436.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061806.t1	A0A072TTF9	86.0	286	30	2	1	276	1	286	6.0e-119	436.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene061806	0.821933	3.10E-53	-1.69E-46
MS.gene049151	MS.gene061806	0.821385	4.15E-53	-1.69E-46
MS.gene049153	MS.gene061806	0.809713	1.65E-50	-1.69E-46
MS.gene049233	MS.gene061806	0.802885	4.54E-49	-1.69E-46
MS.gene049260	MS.gene061806	0.827088	1.90E-54	-1.69E-46
MS.gene049297	MS.gene061806	0.846661	1.89E-59	-1.69E-46
MS.gene049378	MS.gene061806	0.829822	4.15E-55	-1.69E-46
MS.gene049389	MS.gene061806	0.800946	1.14E-48	-1.69E-46
MS.gene049599	MS.gene061806	-0.817307	3.53E-52	-1.69E-46
MS.gene049758	MS.gene061806	0.891252	4.71E-74	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061806.t1	MTR_8g089995	85.467	289	26	2	1	276	1	286	1.40e-152	429
MS.gene061806.t1	MTR_8g089995	84.647	241	21	2	1	228	1	238	3.62e-118	340
MS.gene061806.t1	MTR_3g086990	48.148	243	107	5	30	261	30	264	5.59e-52	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061806.t1	AT5G65250	56.522	184	75	2	66	249	93	271	1.13e-56	185

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Find 81 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTGGGGTGTGGAAAG+TGG	0.487596	4.3:+10442095	None:intergenic
AAGAGCGGAGAGTTCGAGGA+AGG	0.566579	4.3:+10441989	None:intergenic
AAGGAGTTATATCTTGCTAT+CGG	0.595941	4.3:-10441915	MS.gene061806:CDS
AATGCGTGAAATGGTGATGA+TGG	0.584311	4.3:+10442189	None:intergenic
ACGGAAATTTGAGATCGGCG+GGG	0.740613	4.3:+10442041	None:intergenic
ACTTTCATTTCAGGATTACA+AGG	0.527608	4.3:-10438874	MS.gene061806:intron
AGAGAAGAGCGGAGAGTTCG+AGG	0.448141	4.3:+10441985	None:intergenic
AGAGACGGTGTTGAACGGTG+GGG	0.693868	4.3:-10441811	MS.gene061806:CDS
AGAGAGACGGTGTTGAACGG+TGG	0.648405	4.3:-10441813	MS.gene061806:CDS
AGAGGACGTAAGAGTGAATG+AGG	0.489716	4.3:+10442149	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTGGAATACTAGATTCA+TGG	+	chr4.3:10441512-10441531	None:intergenic	30.0%
ACTGTTGGAATATATTCAAG+AGG	+	chr4.3:10439481-10439500	None:intergenic	30.0%
ACTTTCATTTCAGGATTACA+AGG	-	chr4.3:10442111-10442130	MS.gene061806:CDS	30.0%
GAAAACCATCAAATTACAGA+GGG	-	chr4.3:10441829-10441848	MS.gene061806:CDS	30.0%
GAAGGAATCAAAATTGGAAT+CGG	+	chr4.3:10438972-10438991	None:intergenic	30.0%
GTAGTAATTACCTCAGTTAT+AGG	+	chr4.3:10439346-10439365	None:intergenic	30.0%
TTAAGGTTCATAACCAATCT+TGG	-	chr4.3:10439992-10440011	MS.gene061806:intron	30.0%
TTCCAGTAATATGAATTCCT+CGG	+	chr4.3:10440887-10440906	None:intergenic	30.0%
TTTAACCCAAGCTTCAAATT+TGG	+	chr4.3:10441804-10441823	None:intergenic	30.0%
TTTGCAGAGAATTGAGAAAT+TGG	-	chr4.3:10439219-10439238	MS.gene061806:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	10438782	10442225	10438782	ID=MS.gene061806
chr4.3	mRNA	10438782	10442225	10438782	ID=MS.gene061806.t1;Parent=MS.gene061806
chr4.3	exon	10441653	10442225	10441653	ID=MS.gene061806.t1.exon1;Parent=MS.gene061806.t1
chr4.3	CDS	10441653	10442225	10441653	ID=cds.MS.gene061806.t1;Parent=MS.gene061806.t1
chr4.3	exon	10439764	10439874	10439764	ID=MS.gene061806.t1.exon2;Parent=MS.gene061806.t1
chr4.3	CDS	10439764	10439874	10439764	ID=cds.MS.gene061806.t1;Parent=MS.gene061806.t1
chr4.3	exon	10439212	10439355	10439212	ID=MS.gene061806.t1.exon3;Parent=MS.gene061806.t1
chr4.3	CDS	10439212	10439355	10439212	ID=cds.MS.gene061806.t1;Parent=MS.gene061806.t1
chr4.3	exon	10438782	10438883	10438782	ID=MS.gene061806.t1.exon4;Parent=MS.gene061806.t1
chr4.3	CDS	10438782	10438883	10438782	ID=cds.MS.gene061806.t1;Parent=MS.gene061806.t1

Gene Sequence

>MS.gene061806

ATGTTACTCACTTGCCATCATCACCATTTCACGCATTCACCTTTTTCTTCAACTCCTCATTCACTCTTACGTCCTCTTCATCTCAATACTCCAATCCTCAGCCTCAAACCACTTTCCACACCCCACCGTTTCACTTCCTACACCGTCCACTCCAACTCCTTCCCCCGCCGATCTCAAATTTCCGTCGCCGATTCCAATTTTGATTCCTTCCTTTCCTTCCTCGAACTCTCCGCTCTTCTCTCTTCCCTCATCGTATCTTTCACCGTCGCCGTGACTGCAATTTGGAAGAAGGAGTTATATCTTGCTATCGGTAACAGAGTTGCTCCGTGGAGTTTGTTGTTTTTGGTGGTTGGTGTTTTGACTGGTGCGGTGATTAGGAGAAGGAAATGGAGAGAGACGGTGTTGAACGGTGGGGTTTCTGTTTCGGAGGTGGAATTTTTGCAGAGAATTGAGAAATTGGAGGAGGATTTGAAGAGTAATGCGACGGTTGTTAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGTGTTACCAGGAAGGGTTTGAAGGAACCTATAACTGAGGTAATTACTACACTACTCTTAATGTGTGTAAGATGAATTGTTGAGTAAAAAGAGATAAAAGTGATTCTTGAACCATAAAGTTTATTATGAAATGTAAAGTATTCTCAAGTAGAATTGATTTTTCCTCTTGAATATATTCCAACAGTTTTCGTCTTTATAATTGATTTTTAGCGCAATTTATTGTTCAACTTACTTTTACGTAAATTGATCTTAACATAAGTCACTTTACTTTCGATTCACTTTTAATGAAAATCAGTTTTCGTCACTGAAGAATCAAATACACATTTAGTATAGTTTTTACCAATGGAAAAGACCTATTGAATATTAGATAGAATAGGTTCATAGAGCAATGTAAGATCGTAGATGAGATGCGTGATTCACAACCGACTTGTTCAAATAACAAAATATTGACAACTGTGTTTTTGAAAGTATAGTGATATGTGCTGAGAGTTTGTTGGGTGTTTTTTTTTTCTTTTTTTTTTTTTTTTGAGGGAGAGTTTGTTGGGTTATTTATTAATTTTTGTCAAAAGTAGTAATTTAGAACTTATAGTATGAGTTCAAACTGCTTGTTGATAATATATAAGCAATAATATCATAATGGCTCAAATATTCTAGCAATGTTAGGTTGCTGACAAAATTAAGGTTCATAACCAATCTTGGCAGCTCTACAGGATAAAATGCATAAAAAAATTACCTAAATAACCTAGATTGCAACCAGAAGTAGTTAGGGGAATTAGAAAAGATAAATAATTCCAAGTGTGTATTCATGTGTTCGTCATTGGTTGTAGTCAAACATCAACTTTCCTAAAAACATAAGCTTATGGATAGAGAAGCTCATGAAAGAATGATTTTATGCCTCTAAACTAACCCCTGATATGAGTAGATTGGAGCTTGAAATGCTAATGCCCGGCTTTCAATCAATCTTCGATAGCTGTCGCAAACAGACTAACCTCAAACTGCTATAGGGAATAGAGTCTGGCACTTTATTGGAGATCATAGATACATGTGAAAATTTCTATGCAAGACATATATAAATGCTCTAAAATGAAAGACTGTGAGAAACTCATAGCCTTAAGCTAAAAACACTAGTAAAAAATGACAGAAATCATGAAATAATAAACAGAAGACTTAGAACACAGCGGGAAGAAAAAAACAGGAATGTGGAATCTGAGCAAAAGATAGGTAAACAATGTGAGAACTCATGACAGAGAATATGTGAAAATGCTGAAAAGAAAACATGTGTAGATAGTGAACAGAACAAAGTATGTGAATAGAACAGAGCGATGAGCTTGCAAGAAAATGCAGGTTTTGGGTGGAAATGACATTGGAAAACAGTCTATCTTTGAAACAAAGTATGAGGTTTCAAGAAGGAAGGTCAGAAAACAATGAAACTGGGGACAAAATGTTTTGCCCCCATTTCATGAAAGCAGCCACTACAACTGTGAATCTCCCTAAAAATTGACTCAATCTGGTTGCAGGAGCATGAAGCAAAAACTCTCCGAGATGTAGATCCTGTACTGTAGTGTCCTCCGAGGAATTCATATTACTGGAATTAATATTTGTTGATAAAAAAATAAGATTTACAGAACACTAAGTAATTATTACTTAGTTCTTTAAAAAAAAAGTGCTCATTAACATTTCGAGTACTTAGTTCTTTAAAAAAAATGCTCATTAACATTTTGAGTGTCTGGTTGAAGGTTTATATATTGTATCAATTTAATGAACAGAAAAAATATAACAAAATGATATCTAATTATTTGTTCATTTCTTGAATGAAGACTGCAGCTCTGGCACAGAAGAATTCCGAGGCCGCAAGAGCATTAGCCCTGCAATCAGACATTTTGGAGAAGGAGCTGGGGGAAGTTCAAAAGGTTTTGCTAGCAATGCAGGTAATTATCCCTTCAATGTTACTTAAACTCTATGAAAGAGCAAGCACTCTTTAGAAATCAAATGACACTAGTTTGTTATTGAACTTTAAAGGTAACATTATTTTGTGGCTGTAGTATTCTATTCAAACACTTTAGCTCTCATGTGCGGTAGAGATTTTATTTTGATTCGTTGACAGTATTACTCACCCACCTACGCACACCCACACCCACACACAACACAATGATGTGACATAATATTATATTCTGAAGCAAAATGTTTACCAGACCATGAATCTAGTATTCCAGTTTAAACCCATACGTCAGACTAGAGATTTTATATTCTCTTGAACATTTTATTTTCTAAAATATCGTCGTGATTTTTGCTCATCGAGTTTGACTTATCTTGATGGTGTTTGATCATTCATGTAGGAACAACAGCAAAAACAACTTGATCTCATTCTTGCAATTGCGAAGGCAGGTAAGCTATGGGAAAGCAAGCCTGAAACTAGTGAAGAACACGGTACAATAGATATGTCTAACTCAGCTGCGAATCTCAATGCGGTAAATCAGGAGGTCCACCAAATTTGAAGCTTGGGTTAAACTAAGGAAAACCATCAAATTACAGAGGGATGAATCTCAGTGTTACATTCTTTGTTTTTTGATGTGTAAACTGAATCATCCATCTACACACAAAGTCAAAGTAGCCAGAATTTTATTGGCACATAAATAATGATTACACATTTACTAAGGGAGCCTCAAGTTTCCCGTGGATACAGATGGGGAAAAATTACTCAACGAGTCAATTCAAGGAGGGGAGAATTGTCTGAACTCTCTGGTTCTGTGGTAAATTTCGGGAATGTATTGTTAGTTCTTTGTGTTTGTTCATTTACTTTCATTTCAGGATTACAAGGCACTCATCATCAATTTGTCACAGTTCACGTCTTTCCTTAGTTTTGCTGTAACAAAAACAGATGAATATGCATTGGTGTGGTACATACTTTAG

Protein sequence

>MS.gene061806.t1

MLLTCHHHHFTHSPFSSTPHSLLRPLHLNTPILSLKPLSTPHRFTSYTVHSNSFPRRSQISVADSNFDSFLSFLELSALLSSLIVSFTVAVTAIWKKELYLAIGNRVAPWSLLFLVVGVLTGAVIRRRKWRETVLNGGVSVSEVEFLQRIEKLEEDLKSNATVVRVLSRQLEKLGIRFRVTRKGLKEPITETAALAQKNSEAARALALQSDILEKELGEVQKVLLAMQEQQQKQLDLILAIAKAGKLWESKPETSEEHGTIDMSNSAANLNAVNQEDYKALIINLSQFTSFLSFAVTKTDEYALVWYIL