AlfalfaGEDB | MS.gene25436

M. sativa cultivar XinJiangDaYe / MS.gene25436

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25436.t1	XP_013445749.1	100	233	0	0	1	233	50	282	8.80E-105	389.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25436.t1	Q8LC03	65.1	232	77	2	6	233	63	294	6.7e-53	208.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25436.t1	A0A072U1W4	100.0	233	0	0	1	233	50	282	6.4e-105	389.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene25436.t1	TF	HB-HD-ZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene25436	0.815891	7.33E-52	-1.69E-46
MS.gene049190	MS.gene25436	0.839569	1.47E-57	-1.69E-46
MS.gene049328	MS.gene25436	0.801974	6.99E-49	-1.69E-46
MS.gene049340	MS.gene25436	0.804408	2.19E-49	-1.69E-46
MS.gene049341	MS.gene25436	0.855119	7.81E-62	-1.69E-46
MS.gene049404	MS.gene25436	0.819583	1.08E-52	-1.69E-46
MS.gene049711	MS.gene25436	0.817057	4.02E-52	-1.69E-46
MS.gene049807	MS.gene25436	0.828599	8.22E-55	-1.69E-46
MS.gene049808	MS.gene25436	0.813711	2.23E-51	-1.69E-46
MS.gene049850	MS.gene25436	0.801864	7.36E-49	-1.69E-46

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25436.t1	MTR_8g468210	100.000	233	0	0	1	233	50	282	4.24e-173	477
MS.gene25436.t1	MTR_5g039000	85.232	237	30	4	1	233	48	283	2.15e-132	374
MS.gene25436.t1	MTR_7g010020	55.745	235	84	7	1	226	48	271	1.86e-74	227
MS.gene25436.t1	MTR_6g011610	53.689	244	70	8	1	230	58	272	7.52e-74	226
MS.gene25436.t1	MTR_6g011610	55.909	220	65	6	15	230	62	253	7.85e-73	222
MS.gene25436.t1	MTR_6g007647	64.000	100	36	0	24	123	29	128	8.95e-40	137
MS.gene25436.t1	MTR_6g007647	67.021	94	31	0	27	120	66	159	3.16e-39	137
MS.gene25436.t1	MTR_3g080100	48.276	174	67	4	15	173	7	172	3.23e-38	132
MS.gene25436.t1	MTR_3g080100	49.689	161	62	3	15	164	46	198	5.17e-38	133
MS.gene25436.t1	MTR_5g038280	66.667	96	32	0	28	123	87	182	2.08e-37	133

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25436.t1	AT1G69780	67.364	239	60	5	6	233	63	294	2.95e-102	298
MS.gene25436.t1	AT1G26960	60.889	225	63	5	11	233	54	255	8.28e-86	255
MS.gene25436.t1	AT3G01220	53.425	219	78	6	15	226	72	273	6.50e-67	208
MS.gene25436.t1	AT5G15150	48.696	230	83	8	7	226	96	300	3.18e-59	189
MS.gene25436.t1	AT4G40060	57.576	132	52	2	10	137	39	170	1.14e-40	141
MS.gene25436.t1	AT5G65310	45.026	191	84	5	3	174	19	207	2.34e-40	140
MS.gene25436.t1	AT5G65310	45.026	191	84	5	3	174	37	225	2.94e-40	140
MS.gene25436.t1	AT2G22430	66.667	99	33	0	25	123	59	157	3.19e-39	137
MS.gene25436.t1	AT3G01470	65.979	97	33	0	24	120	64	160	4.32e-39	136
MS.gene25436.t1	AT1G27045	48.800	125	58	1	28	146	17	141	1.66e-28	106

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

Find 39 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTCAGATATCAAGC+TGG	0.622724	8.2:+40639032	MS.gene25436:CDS
AACCAAGACAGATTGCTATA+TGG	0.383913	8.2:+40638159	MS.gene25436:CDS
AACCATATAGCAATCTGTCT+TGG	0.526039	8.2:-40638161	None:intergenic
AACCTTAATAAAGAAACAGA+AGG	0.601474	8.2:+40638988	MS.gene25436:CDS
AAGACAATATGATACTATTA+AGG	0.363112	8.2:+40638244	MS.gene25436:CDS
AAGTGCTGTTGCTCCAACCA+TGG	0.633621	8.2:-40639273	None:intergenic
AGAGGAAAATGCAGCTAGCA+AGG	0.526858	8.2:+40638123	MS.gene25436:CDS
AGCTGATGAGGAACTCCTGC+TGG	0.491266	8.2:-40639138	None:intergenic
AGTTAGGGGAGAAGAAGAGA+AGG	0.616244	8.2:+40638036	MS.gene25436:CDS
ATCAATCTGGACTATGGCCA+TGG	0.615676	8.2:+40639256	MS.gene25436:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACATGTCATTGAG+TGG	-	chr8.2:40638786-40638805	None:intergenic	30.0%
CTATATGGTTTCAAAACAGA+AGG	+	chr8.2:40638174-40638193	MS.gene25436:CDS	30.0%
GAAAGTAACTGTGTAATGAT+AGG	-	chr8.2:40638764-40638783	None:intergenic	30.0%
AAACAGTTCAGATATCAAGC+TGG	+	chr8.2:40639032-40639051	MS.gene25436:CDS	35.0%
AACCAAGACAGATTGCTATA+TGG	+	chr8.2:40638159-40638178	MS.gene25436:CDS	35.0%
AACCATATAGCAATCTGTCT+TGG	-	chr8.2:40638164-40638183	None:intergenic	35.0%
CTGAATGTCTTGTCTTGAAT+TGG	-	chr8.2:40639172-40639191	None:intergenic	35.0%
CTTGTCTGTTGAGTAGATAA+AGG	-	chr8.2:40639090-40639109	None:intergenic	35.0%
GAATCAAAAACTTCAGACTG+AGG	+	chr8.2:40638292-40638311	MS.gene25436:CDS	35.0%
GTCTTGAAGAAGATGGAAAT+AGG	-	chr8.2:40639119-40639138	None:intergenic	35.0%

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	40637966	40639302	40637966	ID=MS.gene25436
chr8.2	mRNA	40637966	40639302	40637966	ID=MS.gene25436.t1;Parent=MS.gene25436
chr8.2	exon	40637966	40638313	40637966	ID=MS.gene25436.t1.exon1;Parent=MS.gene25436.t1
chr8.2	CDS	40637966	40638313	40637966	ID=cds.MS.gene25436.t1;Parent=MS.gene25436.t1
chr8.2	exon	40638949	40639302	40638949	ID=MS.gene25436.t1.exon2;Parent=MS.gene25436.t1
chr8.2	CDS	40638949	40639302	40638949	ID=cds.MS.gene25436.t1;Parent=MS.gene25436.t1

Gene Sequence

>MS.gene25436

ATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAGGAAGAATTATCCGATGATGGATCGCAGTTAGGGGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTAGCAAGGGCTCTTGGATTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAATCAAAAACTTCAGACTGAGGTTTGTATTGTAACTTTTTATTCTTTACTCATGGTCAAAAAAAAAAAATTTAACGAATCTAAGCAACAAGAGCTGAATTTCAGTGGATATTGATGATCCAATCTAATGTTGTTCTAAAAGACTTTTTTTTTTTGTTATGTAAAATTTTCTAAAATTTTGATGTCAAATACCATATTTGTTAATTTATGTGTCACTTGAGATGTCTATATTTTGATTTTCAAATAACACAAGAGATGTTCAAGTATTTTGGCTCAACAAGAGATGTTATAAATTTGTGTTATGTGAGATGAGATTGTTTTGATCTTGTAGAAAATAAAGCTTGAGATCATGATGAGTAGTATTTTGCCTTTTGAATATAAAAAGAAATTTCATGATTTTAAGATAACCTTTATTTCCTTTCATCAATTTCACCAACTAATGATAACTTTTATAAAAAGCTGCTTTTTTCCTATCATTACACAGTTACTTTCCACTCAATGACATGTTTTCTTTTGCATGGTTTCCTCATTTTGGTAAAAAAATTAATAATTTAATTCATCATAACATGAGAACTTTATAGTCCAAGCAAAAAAAAGCTTTTTACTTATGGTATTTTGTGATTTCCAAATGTTACTAATTTTCAATGCTTGTTGCAGATATTGGCACTGAAAAATAGAGAACCAACTGAATCAATCAACCTTAATAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGATATCAAGCTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTACTCAACAGACAAGCATAAACCTATTTCCATCTTCTTCAAGACCAGCAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAGATTGATCACATGGTTAAAGAAGAAAGCTTGAGTAACATGTTTTGTGCCATGGATGATCAATCTGGACTATGGCCATGGTTGGAGCAACAGCACTTCAATTAA

Protein sequence

>MS.gene25436.t1

MSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSTQQTSINLFPSSSRPAGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAMDDQSGLWPWLEQQHFN