AlfalfaGEDB | MS.gene25901

M. sativa cultivar XinJiangDaYe / MS.gene25901

KEGG: K22145
GO: -
PFAM: PF14770.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25901.t1	XP_013461068.1	97	165	5	0	1	165	1	165	2.00E-82	315.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25901.t1	Q28GF5	41.3	121	70	1	46	165	16	136	3.8e-18	92.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25901.t1	I3T390	97.0	165	5	0	1	165	1	165	1.4e-82	315.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049129	MS.gene25901	-0.804074	2.57E-49	-1.69E-46
MS.gene04918	MS.gene25901	0.827403	1.60E-54	-1.69E-46
MS.gene04919	MS.gene25901	0.808822	2.56E-50	-1.69E-46
MS.gene04920	MS.gene25901	0.821693	3.52E-53	-1.69E-46
MS.gene049283	MS.gene25901	0.806396	8.39E-50	-1.69E-46
MS.gene049350	MS.gene25901	0.828921	6.87E-55	-1.69E-46
MS.gene049368	MS.gene25901	0.825543	4.43E-54	-1.69E-46
MS.gene049411	MS.gene25901	0.850764	1.37E-60	-1.69E-46
MS.gene049680	MS.gene25901	0.802042	6.77E-49	-1.69E-46
MS.gene050689	MS.gene25901	0.806143	9.49E-50	-1.69E-46

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25901.t1	MTR_3g078663	96.970	165	5	0	1	165	1	165	2.60e-117	328
MS.gene25901.t1	MTR_1g083990	84.181	177	16	1	1	165	296	472	7.53e-95	283
MS.gene25901.t1	MTR_2g069440	76.471	51	6	1	110	160	35	79	2.88e-18	81.3

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25901.t1	AT1G34350	71.166	163	47	0	3	165	1	163	2.06e-82	240
MS.gene25901.t1	AT1G34350	61.170	188	48	1	3	165	1	188	3.26e-76	226

Showing 1 to 2 of 2 entries

Previous1Next

Find 27 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGCTGCTCGTAGTAAGC+AGG	0.566315	3.2:+69471058	MS.gene25901:CDS
AATGCTACGTACACGTCAAA+AGG	0.482328	3.2:-69469677	None:intergenic
ACTGACATAAATACTCCACT+TGG	0.602088	3.2:-69470802	None:intergenic
AGAGACTTAATAGTATTCTG+GGG	0.632890	3.2:+69470740	MS.gene25901:CDS
ATCATAGCGAATGCAAGAAG+AGG	0.591910	3.2:-69470838	None:intergenic
CGATGAACTGAAATCTGCTA+TGG	0.524498	3.2:+69468700	MS.gene25901:CDS
CTGAAAGTTGGTATTCTTCC+TGG	0.303474	3.2:-69469643	None:intergenic
CTGAACTAAGACATCGTGCA+AGG	0.578215	3.2:+69471039	MS.gene25901:CDS
CTTAACAATCAAGTAACATA+AGG	0.491135	3.2:-69471006	None:intergenic
CTTTCATGCTATTGATTGGA+AGG	0.458422	3.2:+69468817	MS.gene25901:CDS

Showing 1 to 10 of 27 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGCAGAAAATTAAAGGCA+GGG	-	chr3.2:69469836-69469855	None:intergenic	30.0%
ACAAATAAATAAGCTTGTCG+AGG	-	chr3.2:69469214-69469233	None:intergenic	30.0%
AGAGACTTAATAGTATTCTG+GGG	+	chr3.2:69470740-69470759	MS.gene25901:CDS	30.0%
AGATGTAAGCACTAAAAACA+TGG	-	chr3.2:69470419-69470438	None:intergenic	30.0%
AGTTGAAGTTTGAATACCTA+TGG	+	chr3.2:69470303-69470322	MS.gene25901:intron	30.0%
ATTGAATTGATAGGGAAGAA+TGG	+	chr3.2:69470449-69470468	MS.gene25901:intron	30.0%
CCTAAAAAGTTATCTTTAGC+AGG	-	chr3.2:69468794-69468813	None:intergenic	30.0%
CTAGTTCGATAGATATTTAG+AGG	+	chr3.2:69470228-69470247	MS.gene25901:intron	30.0%
GACAATATTAGTAAGTTTGC+AGG	-	chr3.2:69469532-69469551	None:intergenic	30.0%
GAGAGACTTAATAGTATTCT+GGG	+	chr3.2:69470739-69470758	MS.gene25901:CDS	30.0%

Showing 1 to 10 of 145 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	69468692	69471085	69468692	ID=MS.gene25901
chr3.2	mRNA	69468692	69471085	69468692	ID=MS.gene25901.t1;Parent=MS.gene25901
chr3.2	exon	69468692	69468838	69468692	ID=MS.gene25901.t1.exon1;Parent=MS.gene25901.t1
chr3.2	CDS	69468692	69468838	69468692	ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1
chr3.2	exon	69469582	69469687	69469582	ID=MS.gene25901.t1.exon2;Parent=MS.gene25901.t1
chr3.2	CDS	69469582	69469687	69469582	ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1
chr3.2	exon	69470719	69470867	69470719	ID=MS.gene25901.t1.exon3;Parent=MS.gene25901.t1
chr3.2	CDS	69470719	69470867	69470719	ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1
chr3.2	exon	69470990	69471085	69470990	ID=MS.gene25901.t1.exon4;Parent=MS.gene25901.t1
chr3.2	CDS	69470990	69471085	69470990	ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1

Gene Sequence

>MS.gene25901

ATGTCGATCGATGAACTGAAATCTGCTATGGAGGAACACGTTGATCTTATGTCAGATCTTGTTCAGAAAATCTCTTCTGAACTTCGTACTAATCTTCGTCCTGCTAAAGATAACTTTTTAGGTTTCTTTCATGCTATTGATTGGAAGGTACCTACTCTTCTCCCTCCAATTTCGCCGCAAACCTTCTCTTTTAGCATTTCTCTCTATTTCCTTATTCTTTTTTATTGCTTCGTCAATTATGGAGTTTAATTGAATGTGGTTTTTTCAATTATCTATTTATTTTGTTGTGTGAGAAATTAAATGAACTAAGCTTGAAGTGCTGAAACTACTGTCATGTTTTGTACTTGTTTGGACTGTTTGTAATATCATTCATTGATTATCACTTATAAGCATAGTTAGATTCATGCGAGTTGTATATTGATTCGCTACTAAATTGAACTTAGGGCCTGTTTGGATTTACTTATTTTTGAGCTTATGAAAAATAGCTTATGCAAATAAATAAGCTTTTTTCATAAACTACCTCGACAAGCTTATTTATTTGTATAAGTTGTTTTGCATAGGCTCAAAAATAAGCTAATCCAAACAAGCCCCTGATTAATACAAATCCGCGGTGTGTATCTTTTTGGACATGAATCTCATCTCGAATGAATCACTGCCTAAACTTTTGTACCAACCAGGCAACCACTGAGTTGTCAAATAGGGGCCCTGAAGCGCGAGTTTATGTTTGTTTTTGATATAATATGATTTTATGGATCATATTACTTTTGGTGTTTTGAATTATCATATTCAATCTCTACCATTTTCTCATTTTAGAAATTTCTAGTTATTTGTATCTATCCTGCAAACTTACTAATATTGTCTTGATTTTTTTTTTTTTGTTTTTGTTTCAGGAACCTTGGCTACTGGGATTGTTAACATTCCATGTTCTATTGCTTCTTGCGATTATTGTCTCCAGGAAGAATACCAACTTTCAGATGTGCTTGTTCCTTTTGACGTGTACGTAGCATTCCTTTTTTAATTTTATGGAATGTTGTTTTTGAATAAACTATAAAGGCTTAATCAAACTGTTCTATTAGTTTTCATGTACCTCACTTCACTTCTGTTTGAAGTTGTTGCCTTCCCCATGATAATCAACTTATCACCCTGCCTTTAATTTTCTGCATTGGGTGAAATACTGAGCGGCGATAACGTGATATTTGGAAAAATAAATAAATTATGTAGTCTATTCAATTTGGTAACATTATGGCGTAATTTGATCCATGTAGCCGACCCACTTAGTGGGATAAAGATTGATTGTTGTTATTGCTGTAGTCTATTCTGTTTGGTTTCTAGCTTTATGCATACAAATCCATTTATCCTATCATGCTTTGATGGTTGCAACTTGCAAATATACCCAAAATTTTCAAAAGAGTGAATATATGGTCATTGTAACTCGTCGAAACTACAATTTATTTACATAAATATTTCTTTTAGAATGAGGTTTTTCATGATATTATCTTAGCCACTGATCAGGTCATGGAGATACAAAATAATTAGCTAGTTCGATAGATATTTAGAGGAGAGTGGATAGGTTATAAATGACAGGAAAGAATACAGTGTTTTGGAGTTTTGAGTTGAAGTTTGAATACCTATGGTGTAGAGAAGATATACGCATTTCCATTGTGCATTCTTGCGTCTTAAGCCTAAACTTGTATCAGATAGACATGTTTGATCATTTTCCATGCCCATGTTTTTAGTGCTTACATCTCTAAGATATAATTGAATTGATAGGGAAGAATGGATGGCTTTGGGTTTTGGAGTGGAACTTTGGATACCCGGTTTAGATAAGATGCACACATTCCCATTGTGCATTCTTGTGTCTCAAGCCTAAACTTGTATCAGACTGATATGTCTGTTCATTTTCCATGCACATATTTGGTGTTTACATCTCTTAATCCTGATGTCAGTTTTATATTTTCTAAGTTCTTTTATCTTTGTTGAACTTGAACCAATAATGTAGCTTAACTTTCTTGGAAATTGTTTTGCAGTGGCTGGTGTATATCTTGCTGAGAGACTTAATAGTATTCTGGGGGAAAACTGGAAAAGCTTCTCTAGTCAAAACTATTTTGATCCAAGTGGAGTATTTATGTCAGTTCTTTGGTCTGGTCCTCTTCTTGCATTCGCTATGATAATCTTGGTTAGTATTTCCCCCTATGACACAACCATTATGGTGACGGTCATCTTTTCATATTGAATATTAACTATCGGTCATCTTTTCATATTGAATATTAACTATAAGTATTTTGTCTCTTTCTGCAGATCAATACACTCTTTTCCTTATGTTACTTGATTGTTAAGTGGAAAAGAGCTGAACTAAGACATCGTGCAAGGGCTGCTCGTAGTAAGCAGGAATAG

Protein sequence

>MS.gene25901.t1

MSIDELKSAMEEHVDLMSDLVQKISSELRTNLRPAKDNFLGFFHAIDWKEPWLLGLLTFHVLLLLAIIVSRKNTNFQMCLFLLTLAGVYLAERLNSILGENWKSFSSQNYFDPSGVFMSVLWSGPLLAFAMIILINTLFSLCYLIVKWKRAELRHRARAARSKQE