Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25901.t1 | XP_013461068.1 | 97 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.00E-82 | 315.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25901.t1 | Q28GF5 | 41.3 | 121 | 70 | 1 | 46 | 165 | 16 | 136 | 3.8e-18 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25901.t1 | I3T390 | 97.0 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 1.4e-82 | 315.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene25901 | -0.804074 | 2.57E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene25901 | 0.827403 | 1.60E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene25901 | 0.808822 | 2.56E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene25901 | 0.821693 | 3.52E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene25901 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene25901 | 0.828921 | 6.87E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene25901 | 0.825543 | 4.43E-54 | -1.69E-46 |
| MS.gene049411 | MS.gene25901 | 0.850764 | 1.37E-60 | -1.69E-46 |
| MS.gene049680 | MS.gene25901 | 0.802042 | 6.77E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene25901 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene25901 | 0.867896 | 9.76E-66 | -1.69E-46 |
| MS.gene050838 | MS.gene25901 | 0.867309 | 1.51E-65 | -1.69E-46 |
| MS.gene050945 | MS.gene25901 | 0.827857 | 1.24E-54 | -1.69E-46 |
| MS.gene050955 | MS.gene25901 | 0.845505 | 3.90E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene25901 | 0.888112 | 7.88E-73 | -1.69E-46 |
| MS.gene051043 | MS.gene25901 | 0.818175 | 2.25E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene25901 | 0.834787 | 2.45E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene25901 | 0.895523 | 8.84E-76 | -1.69E-46 |
| MS.gene051343 | MS.gene25901 | 0.843063 | 1.76E-58 | -1.69E-46 |
| MS.gene051642 | MS.gene25901 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene25901 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene25901 | 0.814497 | 1.49E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene25901 | 0.837655 | 4.57E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene25901 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene051975 | MS.gene25901 | 0.812473 | 4.17E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene25901 | 0.852099 | 5.76E-61 | -1.69E-46 |
| MS.gene052296 | MS.gene25901 | 0.864105 | 1.54E-64 | -1.69E-46 |
| MS.gene052307 | MS.gene25901 | 0.803362 | 3.61E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene25901 | 0.802997 | 4.30E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene25901 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene25901 | 0.800539 | 1.37E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene25901 | 0.838252 | 3.21E-57 | -1.69E-46 |
| MS.gene053058 | MS.gene25901 | 0.811308 | 7.47E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene25901 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene25901 | 0.80377 | 2.98E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene25901 | 0.811518 | 6.73E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene25901 | 0.818322 | 2.08E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene25901 | 0.858776 | 6.53E-63 | -1.69E-46 |
| MS.gene054005 | MS.gene25901 | 0.810938 | 8.99E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene25901 | 0.870367 | 1.54E-66 | -1.69E-46 |
| MS.gene054413 | MS.gene25901 | 0.801604 | 8.33E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene25901 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene25901 | 0.826043 | 3.37E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene25901 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene056075 | MS.gene25901 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene25901 | 0.827881 | 1.22E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene25901 | 0.805731 | 1.16E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene25901 | 0.816633 | 5.00E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene25901 | 0.837234 | 5.86E-57 | -1.69E-46 |
| MS.gene057694 | MS.gene25901 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene057705 | MS.gene25901 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene25901 | 0.826782 | 2.25E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene25901 | -0.830239 | 3.28E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene25901 | 0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene058149 | MS.gene25901 | 0.812393 | 4.34E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene25901 | 0.828337 | 9.51E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene25901 | 0.823806 | 1.14E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene25901 | 0.86169 | 8.59E-64 | -1.69E-46 |
| MS.gene059171 | MS.gene25901 | 0.808531 | 2.96E-50 | -1.69E-46 |
| MS.gene059227 | MS.gene25901 | 0.85051 | 1.62E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene25901 | 0.824192 | 9.22E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene25901 | -0.813037 | 3.13E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene25901 | 0.838091 | 3.53E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene25901 | 0.842485 | 2.51E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene25901 | 0.802386 | 5.75E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene25901 | 0.818074 | 2.37E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene25901 | 0.868183 | 7.89E-66 | -1.69E-46 |
| MS.gene061160 | MS.gene25901 | 0.823618 | 1.26E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25901.t1 | MTR_3g078663 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.60e-117 | 328 |
| MS.gene25901.t1 | MTR_1g083990 | 84.181 | 177 | 16 | 1 | 1 | 165 | 296 | 472 | 7.53e-95 | 283 |
| MS.gene25901.t1 | MTR_2g069440 | 76.471 | 51 | 6 | 1 | 110 | 160 | 35 | 79 | 2.88e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25901.t1 | AT1G34350 | 71.166 | 163 | 47 | 0 | 3 | 165 | 1 | 163 | 2.06e-82 | 240 |
| MS.gene25901.t1 | AT1G34350 | 61.170 | 188 | 48 | 1 | 3 | 165 | 1 | 188 | 3.26e-76 | 226 |
Find 27 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGACTTAATAGTATTC+TGG | 0.230596 | 3.2:+69470738 | MS.gene25901:CDS |
| CTGAAAGTTGGTATTCTTCC+TGG | 0.303474 | 3.2:-69469643 | None:intergenic |
| GTTTCAGGAACCTTGGCTAC+TGG | 0.315298 | 3.2:+69469575 | MS.gene25901:intron |
| GAGTATTTATGTCAGTTCTT+TGG | 0.365618 | 3.2:+69470809 | MS.gene25901:CDS |
| TGCATTCGCTATGATAATCT+TGG | 0.377994 | 3.2:+69470846 | MS.gene25901:CDS |
| TTTATGTCAGTTCTTTGGTC+TGG | 0.387486 | 3.2:+69470814 | MS.gene25901:CDS |
| GTTTCTTTCATGCTATTGAT+TGG | 0.393651 | 3.2:+69468813 | MS.gene25901:CDS |
| TTTCAGGAACCTTGGCTACT+GGG | 0.415351 | 3.2:+69469576 | MS.gene25901:intron |
| TATGTTACTTGATTGTTAAG+TGG | 0.415739 | 3.2:+69471009 | MS.gene25901:CDS |
| GAGAGACTTAATAGTATTCT+GGG | 0.439923 | 3.2:+69470739 | MS.gene25901:CDS |
| CTTTCATGCTATTGATTGGA+AGG | 0.458422 | 3.2:+69468817 | MS.gene25901:CDS |
| AATGCTACGTACACGTCAAA+AGG | 0.482328 | 3.2:-69469677 | None:intergenic |
| CTTAACAATCAAGTAACATA+AGG | 0.491135 | 3.2:-69471006 | None:intergenic |
| TTCTTGCGATTATTGTCTCC+AGG | 0.499806 | 3.2:+69469625 | MS.gene25901:CDS |
| GAACAAGCACATCTGAAAGT+TGG | 0.517575 | 3.2:-69469655 | None:intergenic |
| CGATGAACTGAAATCTGCTA+TGG | 0.524498 | 3.2:+69468700 | MS.gene25901:CDS |
| AAGGGCTGCTCGTAGTAAGC+AGG | 0.566315 | 3.2:+69471058 | MS.gene25901:CDS |
| CTGAACTAAGACATCGTGCA+AGG | 0.578215 | 3.2:+69471039 | MS.gene25901:CDS |
| GTTAACAATCCCAGTAGCCA+AGG | 0.583367 | 3.2:-69469585 | None:intergenic |
| ATCATAGCGAATGCAAGAAG+AGG | 0.591910 | 3.2:-69470838 | None:intergenic |
| ACTGACATAAATACTCCACT+TGG | 0.602088 | 3.2:-69470802 | None:intergenic |
| TCGCAAGAAGCAATAGAACA+TGG | 0.614827 | 3.2:-69469611 | None:intergenic |
| TGAACTGAAATCTGCTATGG+AGG | 0.630102 | 3.2:+69468703 | MS.gene25901:CDS |
| AGAGACTTAATAGTATTCTG+GGG | 0.632890 | 3.2:+69470740 | MS.gene25901:CDS |
| TGAACTAAGACATCGTGCAA+GGG | 0.640138 | 3.2:+69471040 | MS.gene25901:CDS |
| TTTCAGTTCATCGATCGACA+TGG | 0.652553 | 3.2:-69468690 | None:intergenic |
| GAGACTTAATAGTATTCTGG+GGG | 0.682914 | 3.2:+69470741 | MS.gene25901:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATATAATATGATTTTA+TGG | + | chr3.2:69469421-69469440 | MS.gene25901:intron | 10.0% |
| !! | AAGATATAATTGAATTGATA+GGG | + | chr3.2:69470441-69470460 | MS.gene25901:intron | 15.0% |
| !! | ACATTCCATAAAATTAAAAA+AGG | - | chr3.2:69469703-69469722 | None:intergenic | 15.0% |
| !! | TAAGATATAATTGAATTGAT+AGG | + | chr3.2:69470440-69470459 | MS.gene25901:intron | 15.0% |
| !! | TCATATTGAATATTAACTAT+CGG | + | chr3.2:69470916-69470935 | MS.gene25901:intron | 15.0% |
| !!! | AAATTTCTAAAATGAGAAAA+TGG | - | chr3.2:69469491-69469510 | None:intergenic | 15.0% |
| !!! | TAAATATTTCTTTTAGAATG+AGG | + | chr3.2:69470149-69470168 | MS.gene25901:intron | 15.0% |
| !!! | TGTTTTTGAATAAACTATAA+AGG | + | chr3.2:69469723-69469742 | MS.gene25901:intron | 15.0% |
| !!! | TTTTTTTTTGTTTTTGTTTC+AGG | + | chr3.2:69469560-69469579 | MS.gene25901:intron | 15.0% |
| !! | AAAAATAAGTAAATCCAAAC+AGG | - | chr3.2:69469140-69469159 | None:intergenic | 20.0% |
| !! | ATTATGTAGTCTATTCAATT+TGG | + | chr3.2:69469904-69469923 | MS.gene25901:intron | 20.0% |
| !!! | ATTCACTCTTTTGAAAATTT+TGG | - | chr3.2:69470088-69470107 | None:intergenic | 20.0% |
| !!! | GCATTCCTTTTTTAATTTTA+TGG | + | chr3.2:69469695-69469714 | MS.gene25901:intron | 20.0% |
| !!! | TATTCAATTTGGTAACATTA+TGG | + | chr3.2:69469915-69469934 | MS.gene25901:intron | 20.0% |
| !!! | TTCACTCTTTTGAAAATTTT+GGG | - | chr3.2:69470087-69470106 | None:intergenic | 20.0% |
| !!! | TTTATGGATCATATTACTTT+TGG | + | chr3.2:69469437-69469456 | MS.gene25901:intron | 20.0% |
| !!! | TTTTCAAAAGAGTGAATATA+TGG | + | chr3.2:69470091-69470110 | MS.gene25901:intron | 20.0% |
| ! | AGAAAGTTAAGCTACATTAT+TGG | - | chr3.2:69470682-69470701 | None:intergenic | 25.0% |
| ! | ATAATGTAGCTTAACTTTCT+TGG | + | chr3.2:69470682-69470701 | MS.gene25901:intron | 25.0% |
| ! | CGAAGCAATAAAAAAGAATA+AGG | - | chr3.2:69468904-69468923 | None:intergenic | 25.0% |
| ! | CTTAACAATCAAGTAACATA+AGG | - | chr3.2:69471009-69471028 | None:intergenic | 25.0% |
| ! | GAAAATATAAAACTGACATC+AGG | - | chr3.2:69470630-69470649 | None:intergenic | 25.0% |
| ! | TTATGGAGTTTAATTGAATG+TGG | + | chr3.2:69468928-69468947 | MS.gene25901:intron | 25.0% |
| !! | TATGTTACTTGATTGTTAAG+TGG | + | chr3.2:69471009-69471028 | MS.gene25901:CDS | 25.0% |
| !! | TTTTATTGCTTCGTCAATTA+TGG | + | chr3.2:69468911-69468930 | MS.gene25901:intron | 25.0% |
| !!! | TTGTATAAGTTGTTTTGCAT+AGG | + | chr3.2:69469230-69469249 | MS.gene25901:intron | 25.0% |
| AATGCAGAAAATTAAAGGCA+GGG | - | chr3.2:69469836-69469855 | None:intergenic | 30.0% | |
| ACAAATAAATAAGCTTGTCG+AGG | - | chr3.2:69469214-69469233 | None:intergenic | 30.0% | |
| AGAGACTTAATAGTATTCTG+GGG | + | chr3.2:69470740-69470759 | MS.gene25901:CDS | 30.0% | |
| AGATGTAAGCACTAAAAACA+TGG | - | chr3.2:69470419-69470438 | None:intergenic | 30.0% | |
| AGTTGAAGTTTGAATACCTA+TGG | + | chr3.2:69470303-69470322 | MS.gene25901:intron | 30.0% | |
| ATTGAATTGATAGGGAAGAA+TGG | + | chr3.2:69470449-69470468 | MS.gene25901:intron | 30.0% | |
| CCTAAAAAGTTATCTTTAGC+AGG | - | chr3.2:69468794-69468813 | None:intergenic | 30.0% | |
| CTAGTTCGATAGATATTTAG+AGG | + | chr3.2:69470228-69470247 | MS.gene25901:intron | 30.0% | |
| GACAATATTAGTAAGTTTGC+AGG | - | chr3.2:69469532-69469551 | None:intergenic | 30.0% | |
| GAGAGACTTAATAGTATTCT+GGG | + | chr3.2:69470739-69470758 | MS.gene25901:CDS | 30.0% | |
| GAGTATTTATGTCAGTTCTT+TGG | + | chr3.2:69470809-69470828 | MS.gene25901:CDS | 30.0% | |
| GATGTAAGCACTAAAAACAT+GGG | - | chr3.2:69470418-69470437 | None:intergenic | 30.0% | |
| GTTTCTTTCATGCTATTGAT+TGG | + | chr3.2:69468813-69468832 | MS.gene25901:CDS | 30.0% | |
| TATCAGTCTGATACAAGTTT+AGG | - | chr3.2:69470560-69470579 | None:intergenic | 30.0% | |
| TCAAAGCATGATAGGATAAA+TGG | - | chr3.2:69470043-69470062 | None:intergenic | 30.0% | |
| TCGCTACTAAATTGAACTTA+GGG | + | chr3.2:69469114-69469133 | MS.gene25901:intron | 30.0% | |
| TGAGAGACTTAATAGTATTC+TGG | + | chr3.2:69470738-69470757 | MS.gene25901:CDS | 30.0% | |
| TGTCTATCTGATACAAGTTT+AGG | - | chr3.2:69470376-69470395 | None:intergenic | 30.0% | |
| TTCGCTACTAAATTGAACTT+AGG | + | chr3.2:69469113-69469132 | MS.gene25901:intron | 30.0% | |
| TTTATCCTATCATGCTTTGA+TGG | + | chr3.2:69470043-69470062 | MS.gene25901:intron | 30.0% | |
| ! | CCTGCTAAAGATAACTTTTT+AGG | + | chr3.2:69468791-69468810 | MS.gene25901:CDS | 30.0% |
| ! | TCATTTTCCATGCACATATT+TGG | + | chr3.2:69470587-69470606 | MS.gene25901:intron | 30.0% |
| ! | TGTCATGTTTTGTACTTGTT+TGG | + | chr3.2:69469021-69469040 | MS.gene25901:intron | 30.0% |
| !! | GGTGATAAGTTGATTATCAT+GGG | - | chr3.2:69469815-69469834 | None:intergenic | 30.0% |
| !! | GTGATAAGTTGATTATCATG+GGG | - | chr3.2:69469814-69469833 | None:intergenic | 30.0% |
| !! | TGCCTTTAATTTTCTGCATT+GGG | + | chr3.2:69469836-69469855 | MS.gene25901:intron | 30.0% |
| !!! | CAAAACTATTTTGATCCAAG+TGG | + | chr3.2:69470787-69470806 | MS.gene25901:CDS | 30.0% |
| AACCACTGAGTTGTCAAATA+GGG | + | chr3.2:69469371-69469390 | MS.gene25901:intron | 35.0% | |
| AATTGATAGGGAAGAATGGA+TGG | + | chr3.2:69470453-69470472 | MS.gene25901:intron | 35.0% | |
| ACCATAATGGTTGTGTCATA+GGG | - | chr3.2:69470883-69470902 | None:intergenic | 35.0% | |
| ACTGACATAAATACTCCACT+TGG | - | chr3.2:69470805-69470824 | None:intergenic | 35.0% | |
| ATATTTAGAGGAGAGTGGAT+AGG | + | chr3.2:69470240-69470259 | MS.gene25901:intron | 35.0% | |
| ATGCTAAAAGAGAAGGTTTG+CGG | - | chr3.2:69468869-69468888 | None:intergenic | 35.0% | |
| CAATCTTTATCCCACTAAGT+GGG | - | chr3.2:69469964-69469983 | None:intergenic | 35.0% | |
| CAATGCAGAAAATTAAAGGC+AGG | - | chr3.2:69469837-69469856 | None:intergenic | 35.0% | |
| CACCCAATGCAGAAAATTAA+AGG | - | chr3.2:69469841-69469860 | None:intergenic | 35.0% | |
| GAGACTTAATAGTATTCTGG+GGG | + | chr3.2:69470741-69470760 | MS.gene25901:CDS | 35.0% | |
| GAGAGAAATGCTAAAAGAGA+AGG | - | chr3.2:69468876-69468895 | None:intergenic | 35.0% | |
| GATAGATATTTAGAGGAGAG+TGG | + | chr3.2:69470235-69470254 | MS.gene25901:intron | 35.0% | |
| GTAAACACCAAATATGTGCA+TGG | - | chr3.2:69470597-69470616 | None:intergenic | 35.0% | |
| GTATATCTTCTCTACACCAT+AGG | - | chr3.2:69470322-69470341 | None:intergenic | 35.0% | |
| GTGGATAGGTTATAAATGAC+AGG | + | chr3.2:69470254-69470273 | MS.gene25901:intron | 35.0% | |
| TATTATCTTAGCCACTGATC+AGG | + | chr3.2:69470182-69470201 | MS.gene25901:intron | 35.0% | |
| TCAATCTTTATCCCACTAAG+TGG | - | chr3.2:69469965-69469984 | None:intergenic | 35.0% | |
| TGCATTCGCTATGATAATCT+TGG | + | chr3.2:69470846-69470865 | MS.gene25901:CDS | 35.0% | |
| TGTGTGCATCTTATCTAAAC+CGG | - | chr3.2:69470509-69470528 | None:intergenic | 35.0% | |
| TTGCTGTAGTCTATTCTGTT+TGG | + | chr3.2:69469994-69470013 | MS.gene25901:intron | 35.0% | |
| TTTATGTCAGTTCTTTGGTC+TGG | + | chr3.2:69470814-69470833 | MS.gene25901:CDS | 35.0% | |
| ! | CAGGAAAGAATACAGTGTTT+TGG | + | chr3.2:69470273-69470292 | MS.gene25901:intron | 35.0% |
| ! | CTTTCATGCTATTGATTGGA+AGG | + | chr3.2:69468817-69468836 | MS.gene25901:CDS | 35.0% |
| !! | CTGCCTTTAATTTTCTGCAT+TGG | + | chr3.2:69469835-69469854 | MS.gene25901:intron | 35.0% |
| !! | GGGTGATAAGTTGATTATCA+TGG | - | chr3.2:69469816-69469835 | None:intergenic | 35.0% |
| !! | TAAGTTGATTATCATGGGGA+AGG | - | chr3.2:69469810-69469829 | None:intergenic | 35.0% |
| !! | TCTTGGAAATTGTTTTGCAG+TGG | + | chr3.2:69470699-69470718 | MS.gene25901:intron | 35.0% |
| !! | TGTTTTTGTTTCAGGAACCT+TGG | + | chr3.2:69469568-69469587 | MS.gene25901:intron | 35.0% |
| AAACATAAACTCGCGCTTCA+GGG | - | chr3.2:69469398-69469417 | None:intergenic | 40.0% | |
| AAAGATGACCGTCACCATAA+TGG | - | chr3.2:69470896-69470915 | None:intergenic | 40.0% | |
| AAGCACTAAAAACATGGGCA+TGG | - | chr3.2:69470413-69470432 | None:intergenic | 40.0% | |
| AATGCTACGTACACGTCAAA+AGG | - | chr3.2:69469680-69469699 | None:intergenic | 40.0% | |
| AATTGAACTTAGGGCCTGTT+TGG | + | chr3.2:69469123-69469142 | MS.gene25901:intron | 40.0% | |
| ACCACTGAGTTGTCAAATAG+GGG | + | chr3.2:69469372-69469391 | MS.gene25901:intron | 40.0% | |
| ACCGCGGATTTGTATTAATC+AGG | - | chr3.2:69469284-69469303 | None:intergenic | 40.0% | |
| ATCATAGCGAATGCAAGAAG+AGG | - | chr3.2:69470841-69470860 | None:intergenic | 40.0% | |
| CAACCACTGAGTTGTCAAAT+AGG | + | chr3.2:69469370-69469389 | MS.gene25901:intron | 40.0% | |
| CACCATAATGGTTGTGTCAT+AGG | - | chr3.2:69470884-69470903 | None:intergenic | 40.0% | |
| CATAATGGTTGTGTCATAGG+GGG | - | chr3.2:69470881-69470900 | None:intergenic | 40.0% | |
| CCATAATGGTTGTGTCATAG+GGG | - | chr3.2:69470882-69470901 | None:intergenic | 40.0% | |
| CCCTGATTAATACAAATCCG+CGG | + | chr3.2:69469280-69469299 | MS.gene25901:intron | 40.0% | |
| CCGCGGATTTGTATTAATCA+GGG | - | chr3.2:69469283-69469302 | None:intergenic | 40.0% | |
| CGATGAACTGAAATCTGCTA+TGG | + | chr3.2:69468700-69468719 | MS.gene25901:CDS | 40.0% | |
| CGCGGATTTGTATTAATCAG+GGG | - | chr3.2:69469282-69469301 | None:intergenic | 40.0% | |
| CTTCAAACAGAAGTGAAGTG+AGG | - | chr3.2:69469781-69469800 | None:intergenic | 40.0% | |
| GAACAAGCACATCTGAAAGT+TGG | - | chr3.2:69469658-69469677 | None:intergenic | 40.0% | |
| GAGACACAAGAATGCACAAT+GGG | - | chr3.2:69470534-69470553 | None:intergenic | 40.0% | |
| GTGTGCATCTTATCTAAACC+GGG | - | chr3.2:69470508-69470527 | None:intergenic | 40.0% | |
| TAAGACGCAAGAATGCACAA+TGG | - | chr3.2:69470351-69470370 | None:intergenic | 40.0% | |
| TCGCAAGAAGCAATAGAACA+TGG | - | chr3.2:69469614-69469633 | None:intergenic | 40.0% | |
| TGAACTAAGACATCGTGCAA+GGG | + | chr3.2:69471040-69471059 | MS.gene25901:CDS | 40.0% | |
| TGAACTGAAATCTGCTATGG+AGG | + | chr3.2:69468703-69468722 | MS.gene25901:CDS | 40.0% | |
| TGACACAACCATTATGGTGA+CGG | + | chr3.2:69470885-69470904 | MS.gene25901:intron | 40.0% | |
| TGAGACACAAGAATGCACAA+TGG | - | chr3.2:69470535-69470554 | None:intergenic | 40.0% | |
| TGCAACCATCAAAGCATGAT+AGG | - | chr3.2:69470051-69470070 | None:intergenic | 40.0% | |
| TTCTTGCGATTATTGTCTCC+AGG | + | chr3.2:69469625-69469644 | MS.gene25901:CDS | 40.0% | |
| ! | ATAGTATTCTGGGGGAAAAC+TGG | + | chr3.2:69470749-69470768 | MS.gene25901:CDS | 40.0% |
| ! | CCTAAACTTTTGTACCAACC+AGG | + | chr3.2:69469347-69469366 | MS.gene25901:intron | 40.0% |
| ! | CCTGGTTGGTACAAAAGTTT+AGG | - | chr3.2:69469350-69469369 | None:intergenic | 40.0% |
| ! | GTATTAATCAGGGGCTTGTT+TGG | - | chr3.2:69469273-69469292 | None:intergenic | 40.0% |
| !! | CTGAAAGTTGGTATTCTTCC+TGG | - | chr3.2:69469646-69469665 | None:intergenic | 40.0% |
| AGCGGCGATAACGTGATATT+TGG | + | chr3.2:69469869-69469888 | MS.gene25901:intron | 45.0% | |
| AGGGAAGAATGGATGGCTTT+GGG | + | chr3.2:69470460-69470479 | MS.gene25901:intron | 45.0% | |
| CAAACATAAACTCGCGCTTC+AGG | - | chr3.2:69469399-69469418 | None:intergenic | 45.0% | |
| CCCCTATGACACAACCATTA+TGG | + | chr3.2:69470879-69470898 | MS.gene25901:intron | 45.0% | |
| CTGAACTAAGACATCGTGCA+AGG | + | chr3.2:69471039-69471058 | MS.gene25901:CDS | 45.0% | |
| CTTTATCCCACTAAGTGGGT+CGG | - | chr3.2:69469960-69469979 | None:intergenic | 45.0% | |
| GAAATTGGAGGGAGAAGAGT+AGG | - | chr3.2:69468845-69468864 | None:intergenic | 45.0% | |
| GCATTGGGTGAAATACTGAG+CGG | + | chr3.2:69469851-69469870 | MS.gene25901:intron | 45.0% | |
| GTCCAAAAAGATACACACCG+CGG | - | chr3.2:69469300-69469319 | None:intergenic | 45.0% | |
| GTTAACAATCCCAGTAGCCA+AGG | - | chr3.2:69469588-69469607 | None:intergenic | 45.0% | |
| TAGGGAAGAATGGATGGCTT+TGG | + | chr3.2:69470459-69470478 | MS.gene25901:intron | 45.0% | |
| TATCTCCATGACCTGATCAG+TGG | - | chr3.2:69470196-69470215 | None:intergenic | 45.0% | |
| TTTCAGGAACCTTGGCTACT+GGG | + | chr3.2:69469576-69469595 | MS.gene25901:intron | 45.0% | |
| ! | ATCCGCGGTGTGTATCTTTT+TGG | + | chr3.2:69469295-69469314 | MS.gene25901:intron | 45.0% |
| !! | GGAAATTGTTTTGCAGTGGC+TGG | + | chr3.2:69470703-69470722 | MS.gene25901:intron | 45.0% |
| !!! | GAATGGATGGCTTTGGGTTT+TGG | + | chr3.2:69470466-69470485 | MS.gene25901:intron | 45.0% |
| !!! | TGGGTTTTGGAGTGGAACTT+TGG | + | chr3.2:69470479-69470498 | MS.gene25901:intron | 45.0% |
| AAGGTTTGCGGCGAAATTGG+AGG | - | chr3.2:69468857-69468876 | None:intergenic | 50.0% | |
| AGGTTTGCGGCGAAATTGGA+GGG | - | chr3.2:69468856-69468875 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCACTTAGT+GGG | + | chr3.2:69469951-69469970 | MS.gene25901:intron | 50.0% | |
| CTTAGCCACTGATCAGGTCA+TGG | + | chr3.2:69470188-69470207 | MS.gene25901:intron | 50.0% | |
| GAGAAGGTTTGCGGCGAAAT+TGG | - | chr3.2:69468860-69468879 | None:intergenic | 50.0% | |
| GCCCCTATTTGACAACTCAG+TGG | - | chr3.2:69469376-69469395 | None:intergenic | 50.0% | |
| GGAGTGGAACTTTGGATACC+CGG | + | chr3.2:69470487-69470506 | MS.gene25901:intron | 50.0% | |
| GTTTCAGGAACCTTGGCTAC+TGG | + | chr3.2:69469575-69469594 | MS.gene25901:intron | 50.0% | |
| TTGACAACTCAGTGGTTGCC+TGG | - | chr3.2:69469368-69469387 | None:intergenic | 50.0% | |
| !!! | GATGGCTTTGGGTTTTGGAG+TGG | + | chr3.2:69470471-69470490 | MS.gene25901:intron | 50.0% |
| AAGGGCTGCTCGTAGTAAGC+AGG | + | chr3.2:69471058-69471077 | MS.gene25901:CDS | 55.0% | |
| CAACTCAGTGGTTGCCTGGT+TGG | - | chr3.2:69469364-69469383 | None:intergenic | 55.0% | |
| CACTAAGTGGGTCGGCTACA+TGG | - | chr3.2:69469952-69469971 | None:intergenic | 55.0% | |
| CATGTAGCCGACCCACTTAG+TGG | + | chr3.2:69469950-69469969 | MS.gene25901:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69468692 | 69471085 | 69468692 | ID=MS.gene25901 |
| chr3.2 | mRNA | 69468692 | 69471085 | 69468692 | ID=MS.gene25901.t1;Parent=MS.gene25901 |
| chr3.2 | exon | 69468692 | 69468838 | 69468692 | ID=MS.gene25901.t1.exon1;Parent=MS.gene25901.t1 |
| chr3.2 | CDS | 69468692 | 69468838 | 69468692 | ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1 |
| chr3.2 | exon | 69469582 | 69469687 | 69469582 | ID=MS.gene25901.t1.exon2;Parent=MS.gene25901.t1 |
| chr3.2 | CDS | 69469582 | 69469687 | 69469582 | ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1 |
| chr3.2 | exon | 69470719 | 69470867 | 69470719 | ID=MS.gene25901.t1.exon3;Parent=MS.gene25901.t1 |
| chr3.2 | CDS | 69470719 | 69470867 | 69470719 | ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1 |
| chr3.2 | exon | 69470990 | 69471085 | 69470990 | ID=MS.gene25901.t1.exon4;Parent=MS.gene25901.t1 |
| chr3.2 | CDS | 69470990 | 69471085 | 69470990 | ID=cds.MS.gene25901.t1;Parent=MS.gene25901.t1 |
| Gene Sequence |
| Protein sequence |
