Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26062.t1 | RHN47602.1 | 74.1 | 580 | 99 | 4 | 1 | 535 | 1 | 574 | 4.10E-231 | 811.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26062.t1 | A0A396H2M3 | 74.1 | 580 | 99 | 4 | 1 | 535 | 1 | 574 | 3.0e-231 | 811.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26062 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene26062 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene26062 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene26062 | 0.860722 | 1.69E-63 | -1.69E-46 |
| MS.gene049343 | MS.gene26062 | 0.800146 | 1.65E-48 | -1.69E-46 |
| MS.gene049531 | MS.gene26062 | 0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene26062 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene26062 | 0.814935 | 1.20E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene26062 | 0.810588 | 1.07E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene26062 | 0.832311 | 1.02E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene26062 | 0.832399 | 9.67E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene26062 | 0.822755 | 2.00E-53 | -1.69E-46 |
| MS.gene050799 | MS.gene26062 | 0.815444 | 9.22E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene26062 | 0.808288 | 3.33E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene26062 | 0.809952 | 1.47E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene26062 | 0.83382 | 4.28E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene26062 | 0.827042 | 1.95E-54 | -1.69E-46 |
| MS.gene051594 | MS.gene26062 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene26062 | 0.841284 | 5.22E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene26062 | 0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene26062 | -0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene26062 | 0.812318 | 4.50E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene26062 | 0.840535 | 8.20E-58 | -1.69E-46 |
| MS.gene052534 | MS.gene26062 | 0.818956 | 1.49E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene26062 | 0.83351 | 5.12E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene26062 | 0.848888 | 4.60E-60 | -1.69E-46 |
| MS.gene052773 | MS.gene26062 | 0.802846 | 4.62E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene26062 | 0.815122 | 1.09E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene26062 | 0.810437 | 1.15E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene26062 | 0.841643 | 4.19E-58 | -1.69E-46 |
| MS.gene053272 | MS.gene26062 | -0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene26062 | 0.823424 | 1.40E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene26062 | 0.819291 | 1.25E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene26062 | 0.828408 | 9.14E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene26062 | -0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene05458 | MS.gene26062 | 0.815962 | 7.06E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene26062 | 0.855811 | 4.91E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene26062 | 0.820698 | 5.98E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene26062 | 0.821921 | 3.12E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene26062 | 0.807581 | 4.71E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene26062 | 0.831831 | 1.34E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene26062 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene055694 | MS.gene26062 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene055724 | MS.gene26062 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene26062 | 0.82384 | 1.12E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene26062 | 0.830448 | 2.92E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene26062 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene26062 | 0.844436 | 7.57E-59 | -1.69E-46 |
| MS.gene056252 | MS.gene26062 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene056272 | MS.gene26062 | 0.815139 | 1.08E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene26062 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene26062 | 0.833538 | 5.03E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene26062 | 0.859607 | 3.68E-63 | -1.69E-46 |
| MS.gene05690 | MS.gene26062 | 0.824453 | 8.01E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene26062 | 0.818184 | 2.24E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene26062 | 0.825639 | 4.20E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene26062 | 0.822184 | 2.71E-53 | -1.69E-46 |
| MS.gene057598 | MS.gene26062 | 0.847462 | 1.14E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene26062 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene26062 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene26062 | 0.823722 | 1.19E-53 | -1.69E-46 |
| MS.gene058294 | MS.gene26062 | 0.805058 | 1.60E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene26062 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene26062 | 0.804756 | 1.85E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene26062 | 0.81737 | 3.42E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene26062 | 0.837335 | 5.52E-57 | -1.69E-46 |
| MS.gene05897 | MS.gene26062 | 0.816855 | 4.46E-52 | -1.69E-46 |
| MS.gene059015 | MS.gene26062 | 0.815327 | 9.78E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene26062 | 0.807252 | 5.53E-50 | -1.69E-46 |
| MS.gene059459 | MS.gene26062 | 0.807498 | 4.91E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene26062 | 0.854649 | 1.07E-61 | -1.69E-46 |
| MS.gene05985 | MS.gene26062 | -0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene26062 | 0.800581 | 1.35E-48 | -1.69E-46 |
| MS.gene060521 | MS.gene26062 | 0.829656 | 4.56E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene26062 | 0.825483 | 4.57E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene26062 | 0.81923 | 1.30E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26062.t1 | MTR_7g087840 | 73.630 | 584 | 100 | 5 | 1 | 535 | 1 | 579 | 0.0 | 819 |
| MS.gene26062.t1 | MTR_7g087040 | 79.132 | 484 | 92 | 4 | 1 | 480 | 1 | 479 | 0.0 | 739 |
| MS.gene26062.t1 | MTR_7g087040 | 65.310 | 467 | 104 | 5 | 121 | 535 | 466 | 926 | 0.0 | 553 |
| MS.gene26062.t1 | MTR_6g071510 | 66.370 | 562 | 131 | 7 | 1 | 534 | 1 | 532 | 0.0 | 690 |
| MS.gene26062.t1 | MTR_6g471290 | 74.014 | 431 | 88 | 3 | 1 | 431 | 20 | 426 | 0.0 | 605 |
| MS.gene26062.t1 | MTR_6g471290 | 67.241 | 290 | 36 | 3 | 304 | 535 | 667 | 955 | 1.55e-111 | 362 |
| MS.gene26062.t1 | MTR_6g471290 | 64.413 | 281 | 87 | 5 | 1 | 279 | 488 | 757 | 1.58e-97 | 325 |
| MS.gene26062.t1 | MTR_0176s0050 | 70.023 | 427 | 87 | 3 | 148 | 535 | 1 | 425 | 0.0 | 566 |
| MS.gene26062.t1 | MTR_0176s0050 | 69.053 | 433 | 87 | 3 | 148 | 535 | 1 | 431 | 0.0 | 564 |
| MS.gene26062.t1 | MTR_7g089610 | 61.963 | 489 | 167 | 6 | 1 | 482 | 37 | 513 | 0.0 | 562 |
| MS.gene26062.t1 | MTR_0176s0050 | 68.837 | 430 | 87 | 3 | 151 | 535 | 73 | 500 | 0.0 | 556 |
| MS.gene26062.t1 | MTR_0176s0050 | 93.243 | 74 | 5 | 0 | 1 | 74 | 1 | 74 | 1.49e-38 | 150 |
| MS.gene26062.t1 | MTR_6g013240 | 53.184 | 581 | 214 | 10 | 1 | 535 | 67 | 635 | 0.0 | 550 |
| MS.gene26062.t1 | MTR_6g013380 | 52.840 | 581 | 216 | 9 | 1 | 535 | 62 | 630 | 0.0 | 549 |
| MS.gene26062.t1 | MTR_7g095350 | 53.927 | 573 | 210 | 9 | 6 | 535 | 16 | 577 | 0.0 | 545 |
| MS.gene26062.t1 | MTR_7g095350 | 53.927 | 573 | 210 | 9 | 6 | 535 | 8 | 569 | 0.0 | 545 |
| MS.gene26062.t1 | MTR_7g092650 | 64.840 | 438 | 146 | 4 | 1 | 435 | 27 | 459 | 0.0 | 536 |
| MS.gene26062.t1 | MTR_7g089620 | 63.453 | 446 | 148 | 4 | 1 | 439 | 14 | 451 | 3.68e-179 | 521 |
| MS.gene26062.t1 | MTR_7g089570 | 63.554 | 439 | 144 | 4 | 6 | 439 | 44 | 471 | 3.06e-176 | 514 |
| MS.gene26062.t1 | MTR_3g009910 | 46.535 | 606 | 232 | 14 | 11 | 541 | 16 | 604 | 7.08e-158 | 472 |
| MS.gene26062.t1 | MTR_7g095560 | 45.847 | 602 | 248 | 11 | 1 | 535 | 3 | 593 | 2.82e-155 | 466 |
| MS.gene26062.t1 | MTR_7g095350 | 57.931 | 435 | 173 | 6 | 6 | 438 | 8 | 434 | 1.43e-151 | 450 |
| MS.gene26062.t1 | MTR_7g095350 | 57.931 | 435 | 173 | 6 | 6 | 438 | 16 | 442 | 3.59e-151 | 449 |
| MS.gene26062.t1 | MTR_7g095350 | 58.178 | 428 | 169 | 6 | 6 | 431 | 8 | 427 | 4.14e-149 | 444 |
| MS.gene26062.t1 | MTR_7g105510 | 68.025 | 319 | 88 | 2 | 1 | 309 | 27 | 341 | 2.49e-136 | 407 |
| MS.gene26062.t1 | MTR_3g009910 | 51.253 | 439 | 192 | 10 | 11 | 441 | 16 | 440 | 4.16e-127 | 387 |
| MS.gene26062.t1 | MTR_7g105980 | 60.000 | 285 | 69 | 1 | 270 | 509 | 65 | 349 | 3.23e-104 | 325 |
| MS.gene26062.t1 | MTR_7g105980 | 59.857 | 279 | 67 | 1 | 276 | 509 | 1 | 279 | 1.76e-102 | 317 |
| MS.gene26062.t1 | MTR_6g471300 | 71.556 | 225 | 61 | 2 | 220 | 444 | 11 | 232 | 4.43e-97 | 301 |
| MS.gene26062.t1 | MTR_2g032920 | 47.680 | 388 | 163 | 8 | 57 | 439 | 4 | 356 | 4.24e-92 | 293 |
| MS.gene26062.t1 | MTR_7g095340 | 66.667 | 177 | 53 | 3 | 5 | 179 | 6 | 178 | 5.27e-64 | 217 |
| MS.gene26062.t1 | MTR_7g095390 | 61.047 | 172 | 62 | 3 | 2 | 171 | 3 | 171 | 3.03e-57 | 193 |
| MS.gene26062.t1 | MTR_2g064400 | 43.772 | 281 | 118 | 7 | 5 | 261 | 13 | 277 | 1.77e-52 | 191 |
| MS.gene26062.t1 | MTR_2g064400 | 29.552 | 335 | 196 | 8 | 254 | 567 | 148 | 463 | 1.30e-23 | 105 |
| MS.gene26062.t1 | MTR_5g024120 | 79.048 | 105 | 21 | 1 | 1 | 105 | 1 | 104 | 1.44e-47 | 172 |
| MS.gene26062.t1 | MTR_5g024120 | 41.600 | 250 | 109 | 5 | 300 | 535 | 113 | 339 | 9.59e-45 | 164 |
| MS.gene26062.t1 | MTR_7g111110 | 84.375 | 96 | 10 | 1 | 1 | 96 | 1 | 91 | 1.03e-46 | 161 |
| MS.gene26062.t1 | MTR_7g095310 | 50.885 | 226 | 97 | 5 | 116 | 328 | 1 | 225 | 1.12e-46 | 166 |
| MS.gene26062.t1 | MTR_6g071680 | 89.474 | 57 | 6 | 0 | 479 | 535 | 34 | 90 | 2.02e-31 | 118 |
| MS.gene26062.t1 | MTR_7g114090 | 34.286 | 245 | 142 | 5 | 9 | 239 | 6 | 245 | 1.49e-29 | 123 |
| MS.gene26062.t1 | MTR_7g105520 | 60.870 | 92 | 35 | 1 | 390 | 480 | 2 | 93 | 5.28e-29 | 112 |
| MS.gene26062.t1 | MTR_7g116580 | 31.023 | 303 | 174 | 11 | 9 | 282 | 6 | 302 | 1.66e-28 | 120 |
| MS.gene26062.t1 | MTR_7g116250 | 32.500 | 240 | 146 | 5 | 9 | 232 | 6 | 245 | 1.40e-27 | 112 |
| MS.gene26062.t1 | MTR_7g092110 | 65.957 | 47 | 15 | 1 | 1 | 47 | 25 | 70 | 1.36e-12 | 67.8 |
| MS.gene26062.t1 | MTR_2g032940 | 63.830 | 47 | 15 | 1 | 1 | 45 | 1 | 47 | 4.69e-12 | 61.6 |
| MS.gene26062.t1 | MTR_5g090500 | 33.077 | 130 | 80 | 3 | 82 | 207 | 5 | 131 | 6.92e-12 | 66.6 |
| MS.gene26062.t1 | MTR_7g092645 | 54.098 | 61 | 22 | 2 | 478 | 537 | 33 | 88 | 1.72e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCTGGTCTTATTAATT+TGG | 0.082210 | 7.4:+54243777 | MS.gene26062:CDS |
| AAAGATGATGATAGTGATTA+TGG | 0.195506 | 7.4:+54243742 | MS.gene26062:CDS |
| ATCCTAGTATGGACTTCTTT+TGG | 0.256605 | 7.4:+54237668 | MS.gene26062:CDS |
| GATGAACCCAGGGACTTCTT+TGG | 0.257943 | 7.4:+54236715 | MS.gene26062:CDS |
| CCCTATACGTGAACTAAGTA+TGG | 0.261827 | 7.4:-54242606 | None:intergenic |
| CAAGTTAGCTTTGAAGGATT+TGG | 0.266323 | 7.4:+54236258 | MS.gene26062:CDS |
| TTATCCAAGTTTAGCTTTAG+AGG | 0.267176 | 7.4:+54237024 | MS.gene26062:CDS |
| GGATTCACGAATGGGGATTA+AGG | 0.267329 | 7.4:+54236308 | MS.gene26062:CDS |
| GATAAACCTCCTGAGCTTCT+TGG | 0.285689 | 7.4:-54243926 | None:intergenic |
| TATGTGCAAGCAGTTCTTAA+AGG | 0.310348 | 7.4:-54237187 | None:intergenic |
| CTAATAGTACAGAGGTTAAA+AGG | 0.311744 | 7.4:+54243649 | MS.gene26062:CDS |
| CAATTTATGCTCCATTATAA+AGG | 0.315376 | 7.4:+54236451 | MS.gene26062:CDS |
| GGCACCCTTGGCAATTCCTT+TGG | 0.319315 | 7.4:-54236548 | None:intergenic |
| TTCAATATGTTTGGCACCCT+TGG | 0.323705 | 7.4:-54236560 | None:intergenic |
| GATCCTGGTCTTATTAATTT+GGG | 0.331025 | 7.4:+54243778 | MS.gene26062:CDS |
| GCGAATTTGCACTCCTCAAT+AGG | 0.331861 | 7.4:-54240233 | None:intergenic |
| CCATTCGTGAATCCATTGTT+TGG | 0.334005 | 7.4:-54236299 | None:intergenic |
| ATCTGAATTTGCCACAAGAT+TGG | 0.350427 | 7.4:+54236426 | MS.gene26062:CDS |
| GAAGAGAAGTTCAATATGTT+TGG | 0.352686 | 7.4:-54236569 | None:intergenic |
| TGCCTAGGTGTTTGTTGAAA+AGG | 0.362658 | 7.4:+54243626 | MS.gene26062:CDS |
| GTTTCAAAATCTTAGACAAT+TGG | 0.365504 | 7.4:+54237621 | MS.gene26062:CDS |
| GTCTGATGTTGCAGAAGTTA+AGG | 0.381496 | 7.4:+54243427 | MS.gene26062:CDS |
| GGATCATGGCACCTTTATAA+TGG | 0.383978 | 7.4:-54236462 | None:intergenic |
| ATTCGAGTAAAATTTCCATT+AGG | 0.387274 | 7.4:+54236490 | MS.gene26062:CDS |
| GAGAATTTAGCTTTGATTGT+CGG | 0.391861 | 7.4:+54237453 | MS.gene26062:CDS |
| AAAGGAGCTTGAATGTTCAT+TGG | 0.391964 | 7.4:-54237000 | None:intergenic |
| AAGTGTGAGGTTGCGTTGTT+TGG | 0.396840 | 7.4:+54242188 | MS.gene26062:intron |
| TCCCTATGTTCATCACCTAA+TGG | 0.400046 | 7.4:-54236505 | None:intergenic |
| ATATGTGGTAAACTTGCAAT+TGG | 0.410398 | 7.4:-54237429 | None:intergenic |
| TACTCGAATGGAACGGATCA+TGG | 0.410835 | 7.4:-54236476 | None:intergenic |
| CAATTGGAGTTACGTATTGA+TGG | 0.412134 | 7.4:+54237637 | MS.gene26062:CDS |
| TGTTATTCACGAGATGCTTA+AGG | 0.418155 | 7.4:+54240359 | MS.gene26062:CDS |
| CAAATCCTTCAAAGCTAACT+TGG | 0.419928 | 7.4:-54236257 | None:intergenic |
| TTTAGTGACAGAGTCTATCT+TGG | 0.424140 | 7.4:+54240276 | MS.gene26062:CDS |
| TGAGAGAGAGGAAGGATTTG+TGG | 0.424845 | 7.4:-54236388 | None:intergenic |
| TGTGGTGGTGATTGTTGGTT+AGG | 0.426512 | 7.4:+54240330 | MS.gene26062:CDS |
| AACTTGCAATTGGATCAAAA+AGG | 0.429829 | 7.4:-54237419 | None:intergenic |
| TTGGCGGGAAAATCAGTTGA+TGG | 0.434732 | 7.4:+54242236 | MS.gene26062:CDS |
| AAGATGATGATAGTGATTAT+GGG | 0.438771 | 7.4:+54243743 | MS.gene26062:CDS |
| ATGCCTGTGGTGGTGATTGT+TGG | 0.441230 | 7.4:+54240325 | MS.gene26062:CDS |
| TTCTTGGATACATCAGATAG+AGG | 0.447502 | 7.4:+54237384 | MS.gene26062:CDS |
| GAATACTCAACTTCAATTGA+TGG | 0.449008 | 7.4:+54243823 | MS.gene26062:CDS |
| GCATCAATAGATATCTCAAT+AGG | 0.449747 | 7.4:-54237282 | None:intergenic |
| GAAGCTTATTGATACCTTTG+AGG | 0.450334 | 7.4:+54243885 | MS.gene26062:CDS |
| TGGTATAGAGATCAAAGTTA+AGG | 0.457776 | 7.4:-54236336 | None:intergenic |
| CAAACAATGGATTCACGAAT+GGG | 0.464698 | 7.4:+54236300 | MS.gene26062:CDS |
| TTGACTGATTATTATCAACT+TGG | 0.464790 | 7.4:-54236860 | None:intergenic |
| AGGTTAAAAGGTGTGGATGT+TGG | 0.468390 | 7.4:+54243661 | MS.gene26062:CDS |
| GAGGTTTATCAAGATTGATA+AGG | 0.468574 | 7.4:+54243939 | MS.gene26062:CDS |
| AAGGAGCTTGAATGTTCATT+GGG | 0.469587 | 7.4:-54236999 | None:intergenic |
| ATACAAGATATAATTTGATC+AGG | 0.473788 | 7.4:-54236229 | None:intergenic |
| GGGGATGGTGACACTGATCC+TGG | 0.473850 | 7.4:+54243763 | MS.gene26062:CDS |
| CATTGTTGGGTAAGAGAACA+AGG | 0.480560 | 7.4:-54236654 | None:intergenic |
| GTTAAGGTTGGTGTGGATGT+TGG | 0.484654 | 7.4:+54243443 | MS.gene26062:CDS |
| ATGATGACAGTTCTGTTAAG+AGG | 0.487072 | 7.4:+54243863 | MS.gene26062:CDS |
| CCATTGTTTGGACAATGCAC+TGG | 0.487267 | 7.4:-54236287 | None:intergenic |
| AGTTGGCTACTCACCTATTG+AGG | 0.488368 | 7.4:+54240220 | MS.gene26062:intron |
| CGTGAACTAAGTATGGGTAT+AGG | 0.488410 | 7.4:-54242599 | None:intergenic |
| GATAGACTCTGTCACTAAAA+CGG | 0.491071 | 7.4:-54240272 | None:intergenic |
| GAAACCTTTGAGAGAGAGGA+AGG | 0.491596 | 7.4:-54236396 | None:intergenic |
| TGGAGCATGTGATCCTAGTA+TGG | 0.492416 | 7.4:+54237657 | MS.gene26062:CDS |
| TCCATTAGGTGATGAACATA+GGG | 0.493896 | 7.4:+54236504 | MS.gene26062:CDS |
| AAGTGAAACCTTTGAGAGAG+AGG | 0.498903 | 7.4:-54236400 | None:intergenic |
| AGAACAAGGGAAAATTTGTA+TGG | 0.499254 | 7.4:-54236640 | None:intergenic |
| ATAGGTCAAAGAATCATTGT+TGG | 0.501308 | 7.4:-54236668 | None:intergenic |
| TGCGTTGTTTGGTGATTATG+TGG | 0.502526 | 7.4:+54242199 | MS.gene26062:CDS |
| TCTATCTTGGAGGTGGAAGA+TGG | 0.503004 | 7.4:+54240289 | MS.gene26062:CDS |
| TTCCATTAGGTGATGAACAT+AGG | 0.503651 | 7.4:+54236503 | MS.gene26062:CDS |
| AGCCAAAAGAAGTCCATACT+AGG | 0.507020 | 7.4:-54237670 | None:intergenic |
| GTTTGAGCATTGTTAACTGT+GGG | 0.509852 | 7.4:+54236893 | MS.gene26062:CDS |
| TGTGGATGTTGGAGAAGGCT+TGG | 0.511058 | 7.4:+54243672 | MS.gene26062:CDS |
| TAGGTCAAAGAATCATTGTT+GGG | 0.514994 | 7.4:-54236667 | None:intergenic |
| TGTGGATGTTGGACAAGGCT+TGG | 0.516732 | 7.4:+54243454 | MS.gene26062:CDS |
| TGTGGATATCATGCAAAAGT+TGG | 0.519786 | 7.4:+54242217 | MS.gene26062:CDS |
| ACAACCTCTAAAGCTAAACT+TGG | 0.520794 | 7.4:-54237028 | None:intergenic |
| TTTAATCCAAAGAAGTCCCT+GGG | 0.522502 | 7.4:-54236721 | None:intergenic |
| AGTGACAGAGTCTATCTTGG+AGG | 0.524516 | 7.4:+54240279 | MS.gene26062:CDS |
| CATCAAAGGTGAAGTCTACA+AGG | 0.525048 | 7.4:-54236822 | None:intergenic |
| GGTGATGACACCGACATTGT+TGG | 0.527365 | 7.4:+54243799 | MS.gene26062:CDS |
| GACAGAGTCTATCTTGGAGG+TGG | 0.527981 | 7.4:+54240282 | MS.gene26062:CDS |
| AAGAAAACCTTCGATAACCT+TGG | 0.528843 | 7.4:-54237366 | None:intergenic |
| AAAAGAGGCTCTTGATCTCA+AGG | 0.530330 | 7.4:+54242455 | MS.gene26062:CDS |
| AAAGCTAAATTCTCAATATG+TGG | 0.532201 | 7.4:-54237444 | None:intergenic |
| GTTACTGATGGTGTTGTTGA+AGG | 0.533082 | 7.4:+54242724 | MS.gene26062:CDS |
| CCAAACAATGGATTCACGAA+TGG | 0.533265 | 7.4:+54236299 | MS.gene26062:CDS |
| TGCATGATACCAAGAAGCTC+AGG | 0.537367 | 7.4:+54243917 | MS.gene26062:CDS |
| AAAGGTGTGGATGTTGGAGA+AGG | 0.539570 | 7.4:+54243667 | MS.gene26062:CDS |
| GCTTGAATGTTCATTGGGTG+TGG | 0.540402 | 7.4:-54236994 | None:intergenic |
| GATATCATGCAAAAGTTGGC+GGG | 0.540585 | 7.4:+54242221 | MS.gene26062:CDS |
| CGTTTGAGCATTGTTAACTG+TGG | 0.545019 | 7.4:+54236892 | MS.gene26062:CDS |
| AAAGGAATTAGCGAAAGTCT+TGG | 0.547819 | 7.4:+54237594 | MS.gene26062:CDS |
| GTGGAAGCATAGTCAGCAGC+TGG | 0.550951 | 7.4:-54243515 | None:intergenic |
| AAATCCTTCCTCTCTCTCAA+AGG | 0.551146 | 7.4:+54236392 | MS.gene26062:CDS |
| TACGGCTCCAAGGTTATCGA+AGG | 0.551350 | 7.4:+54237359 | MS.gene26062:CDS |
| TCTTGGATACATCAGATAGA+GGG | 0.559791 | 7.4:+54237385 | MS.gene26062:CDS |
| GGATATCATGCAAAAGTTGG+CGG | 0.560135 | 7.4:+54242220 | MS.gene26062:CDS |
| AGTACAGAGGTTAAAAGGTG+TGG | 0.565364 | 7.4:+54243654 | MS.gene26062:CDS |
| ATCCTCGTTAAGATCACAGT+TGG | 0.569039 | 7.4:-54243707 | None:intergenic |
| TCACGAATGGGGATTAAGGA+TGG | 0.569324 | 7.4:+54236312 | MS.gene26062:CDS |
| GTTGGAGAAGGCTTGGATGT+TGG | 0.571338 | 7.4:+54243679 | MS.gene26062:CDS |
| CGTGATCTTACAATCATCAA+AGG | 0.579190 | 7.4:-54236836 | None:intergenic |
| ATGTAACCCAGGTATAAAAG+AGG | 0.583060 | 7.4:+54242440 | MS.gene26062:CDS |
| ATTGATAGATTGATCTCCAA+AGG | 0.585738 | 7.4:+54236532 | MS.gene26062:CDS |
| TGCAGAAGTTAAGGTTGGTG+TGG | 0.586776 | 7.4:+54243436 | MS.gene26062:CDS |
| GATGATAGTGATTATGGGGA+TGG | 0.586801 | 7.4:+54243748 | MS.gene26062:CDS |
| CCATTGCATAGGAATTGCCT+AGG | 0.586926 | 7.4:+54243611 | MS.gene26062:intron |
| TAACCAACAATCACCACCAC+AGG | 0.591360 | 7.4:-54240328 | None:intergenic |
| ACTGTCATCATATTTCAGAC+TGG | 0.593353 | 7.4:-54243851 | None:intergenic |
| ATTTGTGTTATAGTCAAACA+TGG | 0.594559 | 7.4:-54236356 | None:intergenic |
| CAGTTGATCATACTTGATTG+TGG | 0.595031 | 7.4:+54237243 | MS.gene26062:CDS |
| CATAAATTGATCCAATCTTG+TGG | 0.600842 | 7.4:-54236437 | None:intergenic |
| AACGACGACATTGGAAACAA+AGG | 0.602641 | 7.4:-54243486 | None:intergenic |
| AAGCTAAACTTGGATAACAA+AGG | 0.603054 | 7.4:-54237018 | None:intergenic |
| TAGGTCTACAACACTAGGAG+TGG | 0.604323 | 7.4:+54242565 | MS.gene26062:intron |
| CTCACGTGACACTTGCATGT+AGG | 0.610007 | 7.4:-54242763 | None:intergenic |
| AGGCTCTTGATCTCAAGGCT+AGG | 0.612265 | 7.4:+54242460 | MS.gene26062:CDS |
| ATGAACAGAAGAATGTTCGA+AGG | 0.613153 | 7.4:-54236962 | None:intergenic |
| GATGTTGCAGAAGTTAAGGT+TGG | 0.614135 | 7.4:+54243431 | MS.gene26062:CDS |
| GAAGCATAGTCAGCAGCTGG+TGG | 0.614538 | 7.4:-54243512 | None:intergenic |
| TGAGTATTCACCAACAATGT+CGG | 0.619491 | 7.4:-54243809 | None:intergenic |
| TCACCCAAATTAATAAGACC+AGG | 0.621205 | 7.4:-54243781 | None:intergenic |
| GTAAATGTGAAGATCTTCAG+AGG | 0.622314 | 7.4:+54242284 | MS.gene26062:CDS |
| GATCTCCAAAGGAATTGCCA+AGG | 0.623255 | 7.4:+54236543 | MS.gene26062:CDS |
| CCAGTGCATTGTCCAAACAA+TGG | 0.624511 | 7.4:+54236287 | MS.gene26062:CDS |
| CCTATACGTGAACTAAGTAT+GGG | 0.625273 | 7.4:-54242605 | None:intergenic |
| TGGTGGATCAACGACGACAT+TGG | 0.626311 | 7.4:-54243495 | None:intergenic |
| AGACATTCAGAAAACAGAGT+AGG | 0.630293 | 7.4:-54237147 | None:intergenic |
| GGTGTACCCAGTATATTCAA+AGG | 0.632128 | 7.4:-54237319 | None:intergenic |
| CAGAGTAGGCAAGATGTGCG+TGG | 0.633517 | 7.4:-54237133 | None:intergenic |
| AATATACTGGGTACACCACA+CGG | 0.635000 | 7.4:+54237325 | MS.gene26062:CDS |
| AATGCGTCTTAGATGAACCC+AGG | 0.636781 | 7.4:+54236704 | MS.gene26062:CDS |
| ATCTCCAAAGGAATTGCCAA+GGG | 0.638400 | 7.4:+54236544 | MS.gene26062:CDS |
| TGATAGTTATAAGCTTTCGA+CGG | 0.643407 | 7.4:-54236921 | None:intergenic |
| ACCATATAAAATTACCTCGG+TGG | 0.644097 | 7.4:-54243534 | None:intergenic |
| CTATCAGGATCATGTAACCC+AGG | 0.644763 | 7.4:+54242429 | MS.gene26062:intron |
| AGATGATGATAGTGATTATG+GGG | 0.647276 | 7.4:+54243744 | MS.gene26062:CDS |
| ATGCGTCTTAGATGAACCCA+GGG | 0.654897 | 7.4:+54236705 | MS.gene26062:CDS |
| AAACAATGGATTCACGAATG+GGG | 0.655889 | 7.4:+54236301 | MS.gene26062:CDS |
| CTCCAACTGTGATCTTAACG+AGG | 0.664116 | 7.4:+54243705 | MS.gene26062:CDS |
| ATGCACAACAGAATCCTCAA+AGG | 0.664572 | 7.4:-54243899 | None:intergenic |
| GTTGGTGTGGATGTTGGACA+AGG | 0.665300 | 7.4:+54243449 | MS.gene26062:CDS |
| ATGATACCAAGAAGCTCAGG+AGG | 0.668377 | 7.4:+54243920 | MS.gene26062:CDS |
| CGTAAAAGAAATTATCCGTG+TGG | 0.680304 | 7.4:-54237340 | None:intergenic |
| TGAAAAGGCTAATAGTACAG+AGG | 0.682923 | 7.4:+54243641 | MS.gene26062:CDS |
| TTGTTGAAGGAGAAGAGTGG+TGG | 0.690093 | 7.4:+54242737 | MS.gene26062:CDS |
| ATTGTTGGGTAAGAGAACAA+GGG | 0.701545 | 7.4:-54236653 | None:intergenic |
| CAAAGGTGAAGTCTACAAGG+TGG | 0.737094 | 7.4:-54236819 | None:intergenic |
| GTGTTGTTGAAGGAGAAGAG+TGG | 0.741831 | 7.4:+54242734 | MS.gene26062:CDS |
| TGCTGACTATGCTTCCACCG+AGG | 0.749166 | 7.4:+54243520 | MS.gene26062:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 54236196 | 54243966 | 54236196 | ID=MS.gene26062 |
| chr7.4 | mRNA | 54236196 | 54243966 | 54236196 | ID=MS.gene26062.t1;Parent=MS.gene26062 |
| chr7.4 | exon | 54236196 | 54237485 | 54236196 | ID=MS.gene26062.t1.exon1;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54236196 | 54237485 | 54236196 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54237592 | 54237741 | 54237592 | ID=MS.gene26062.t1.exon2;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54237592 | 54237741 | 54237592 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54240222 | 54240386 | 54240222 | ID=MS.gene26062.t1.exon3;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54240222 | 54240386 | 54240222 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54242191 | 54242305 | 54242191 | ID=MS.gene26062.t1.exon4;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54242191 | 54242305 | 54242191 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54242436 | 54242481 | 54242436 | ID=MS.gene26062.t1.exon5;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54242436 | 54242481 | 54242436 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54242568 | 54242620 | 54242568 | ID=MS.gene26062.t1.exon6;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54242568 | 54242620 | 54242568 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54242722 | 54242780 | 54242722 | ID=MS.gene26062.t1.exon7;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54242722 | 54242780 | 54242722 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54243413 | 54243541 | 54243413 | ID=MS.gene26062.t1.exon8;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54243413 | 54243541 | 54243413 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| chr7.4 | exon | 54243622 | 54243966 | 54243622 | ID=MS.gene26062.t1.exon9;Parent=MS.gene26062.t1 |
| chr7.4 | CDS | 54243622 | 54243966 | 54243622 | ID=cds.MS.gene26062.t1;Parent=MS.gene26062.t1 |
| Gene Sequence |
| Protein sequence |
