AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31545

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31545.t1 MTR_2g089670 90.167 478 45 1 1 476 6 483 0.0 848
MS.gene31545.t1 MTR_2g089765 71.926 488 112 7 5 476 10 488 0.0 706
MS.gene31545.t1 MTR_8g012750 65.281 481 141 14 15 474 1 476 0.0 582
MS.gene31545.t1 MTR_2g089665 61.305 429 71 3 17 445 2 335 1.23e-178 504
MS.gene31545.t1 MTR_7g015860 44.142 478 225 11 17 472 5 462 1.25e-124 371
MS.gene31545.t1 MTR_3g028210 37.527 469 272 10 17 473 8 467 1.76e-94 294
MS.gene31545.t1 MTR_7g014330 38.758 467 251 15 18 466 3 452 1.99e-93 291
MS.gene31545.t1 MTR_2g089650 36.765 476 258 15 17 470 9 463 2.61e-90 283
MS.gene31545.t1 MTR_6g015850 34.917 484 280 10 1 473 1 460 1.15e-87 276
MS.gene31545.t1 MTR_6g015815 35.381 472 272 11 18 473 9 463 1.47e-86 273
MS.gene31545.t1 MTR_2g089755 36.419 497 267 17 1 470 1 475 4.92e-86 272
MS.gene31545.t1 MTR_7g014230 36.910 466 261 14 18 466 5 454 6.95e-84 266
MS.gene31545.t1 MTR_7g014250 36.017 472 267 14 18 471 3 457 1.32e-83 265
MS.gene31545.t1 MTR_2g089735 35.698 437 247 12 54 470 39 461 4.40e-81 259
MS.gene31545.t1 MTR_3g087640 34.874 476 274 13 18 470 10 472 5.38e-81 259
MS.gene31545.t1 MTR_6g015830 34.110 472 282 11 16 473 7 463 1.12e-78 253
MS.gene31545.t1 MTR_6g015320 33.333 465 283 11 13 466 2 450 3.58e-75 243
MS.gene31545.t1 MTR_6g015315 33.333 429 255 9 52 466 37 448 3.32e-73 238
MS.gene31545.t1 MTR_7g014610 34.105 475 270 13 29 475 18 477 2.59e-72 236
MS.gene31545.t1 MTR_7g014160 31.942 479 289 11 12 466 4 469 3.57e-72 236
MS.gene31545.t1 MTR_7g014200 33.817 482 271 17 12 466 4 464 6.35e-72 235
MS.gene31545.t1 MTR_7g013850 31.906 467 265 14 41 470 30 480 3.57e-64 215
MS.gene31545.t1 MTR_7g014620 32.143 448 257 11 36 466 11 428 2.55e-59 201
MS.gene31545.t1 MTR_7g014360 30.435 391 233 10 86 466 21 382 2.12e-50 176
MS.gene31545.t1 MTR_3g435300 36.749 283 153 11 18 289 4 271 7.41e-43 153
MS.gene31545.t1 MTR_6g015310 26.902 368 206 9 88 448 22 333 2.78e-34 131
MS.gene31545.t1 MTR_7g014310 29.091 330 177 10 125 451 29 304 7.29e-34 129
MS.gene31545.t1 MTR_7g014670 36.757 185 113 2 286 466 71 255 1.45e-33 127
MS.gene31545.t1 MTR_2g089745 71.605 81 23 0 396 476 3 83 7.96e-30 112
MS.gene31545.t1 MTR_7g014630 31.359 287 164 11 17 286 9 279 1.37e-29 119
MS.gene31545.t1 MTR_7g014180 38.547 179 95 6 17 191 7 174 6.89e-25 101
MS.gene31545.t1 MTR_2g064495 25.238 420 275 15 57 466 39 429 4.30e-21 95.9
MS.gene31545.t1 MTR_2g105330 24.824 427 278 15 57 473 39 432 1.02e-20 94.7
MS.gene31545.t1 MTR_8g041770 28.117 377 232 14 55 422 44 390 3.35e-20 93.2
MS.gene31545.t1 MTR_4g022670 26.790 377 245 15 55 422 38 392 8.87e-20 92.0
MS.gene31545.t1 MTR_4g022720 24.364 472 294 18 16 465 3 433 8.27e-19 89.0
MS.gene31545.t1 MTR_4g094835 26.834 477 267 22 15 456 2 431 1.18e-18 88.6
MS.gene31545.t1 MTR_4g007540 23.866 419 275 15 57 462 39 426 4.12e-18 86.7
MS.gene31545.t1 MTR_8g079710 24.760 416 235 17 37 422 26 393 5.47e-18 86.7
MS.gene31545.t1 MTR_3g088420 25.647 425 255 15 29 437 15 394 6.96e-18 86.3
MS.gene31545.t1 MTR_8g075610 27.177 379 229 17 57 422 30 374 2.17e-17 84.7
MS.gene31545.t1 MTR_4g094842 23.579 475 311 17 15 466 2 447 3.68e-17 84.0
MS.gene31545.t1 MTR_4g022800 25.120 418 272 15 67 465 45 440 5.72e-17 83.6
MS.gene31545.t1 MTR_7g014210 37.931 116 68 3 328 440 24 138 6.65e-17 78.6
MS.gene31545.t1 MTR_3g070170 22.857 420 270 13 71 459 60 456 1.48e-16 82.4
MS.gene31545.t1 MTR_3g026310 26.108 406 251 14 38 422 22 399 6.65e-16 80.1
MS.gene31545.t1 MTR_7g014205 37.391 115 58 3 326 438 18 120 1.51e-15 73.2
MS.gene31545.t1 MTR_8g096530 25.062 403 248 14 76 462 58 422 2.36e-15 78.6
MS.gene31545.t1 MTR_3g098980 24.623 398 255 15 76 462 65 428 4.56e-15 77.4
MS.gene31545.t1 MTR_3g435290 36.111 108 66 2 351 458 1 105 7.50e-15 71.2
MS.gene31545.t1 MTR_7g014340 59.420 69 26 2 18 85 3 70 1.12e-14 70.1
MS.gene31545.t1 MTR_7g085930 23.529 493 310 20 16 473 4 464 1.13e-14 76.6
MS.gene31545.t1 MTR_4g022290 23.133 415 248 17 34 422 24 393 2.78e-14 75.1
MS.gene31545.t1 MTR_7g014220 59.375 64 25 1 32 95 10 72 7.17e-14 67.4
MS.gene31545.t1 MTR_7g114560 21.600 375 250 13 57 421 47 387 4.66e-13 71.2
MS.gene31545.t1 MTR_4g094828 24.079 407 256 17 36 422 25 398 6.37e-13 70.9
MS.gene31545.t1 MTR_3g101930 24.332 374 242 16 63 421 56 403 1.01e-12 70.5
MS.gene31545.t1 MTR_2g007880 21.628 430 265 15 59 462 56 439 1.04e-12 70.5
MS.gene31545.t1 MTR_7g085990 25.000 484 284 22 17 459 1 446 2.06e-12 69.3
MS.gene31545.t1 MTR_7g114550 21.958 378 245 14 57 421 47 387 3.65e-12 68.6
MS.gene31545.t1 MTR_8g079970 22.222 459 307 14 15 462 1 420 6.04e-12 67.8
MS.gene31545.t1 MTR_4g097090 23.907 389 245 13 57 421 45 406 1.85e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31545.t1 AT1G03940 37.792 471 254 14 18 467 9 461 7.33e-100 308
MS.gene31545.t1 AT3G29670 34.402 468 276 15 15 470 1 449 1.99e-72 236
MS.gene31545.t1 AT1G03495 39.193 347 188 12 18 353 9 343 2.02e-68 223
MS.gene31545.t1 AT5G61160 31.712 473 287 14 15 472 1 452 4.42e-63 212
MS.gene31545.t1 AT3G29635 31.343 469 294 12 15 470 1 454 1.03e-61 208
MS.gene31545.t1 AT3G29680 31.441 458 293 10 15 466 1 443 6.76e-60 203
MS.gene31545.t1 AT5G39090 31.712 473 273 17 16 468 4 446 3.27e-57 196
MS.gene31545.t1 AT5G39080 29.707 478 293 18 16 470 4 461 2.59e-55 191
MS.gene31545.t1 AT3G29590 31.677 483 261 20 12 466 3 444 2.92e-54 188
MS.gene31545.t1 AT5G39050 29.598 473 298 14 16 468 9 466 7.36e-50 177
MS.gene31545.t1 AT5G23940 26.360 478 287 21 15 463 1 442 6.27e-22 99.0
MS.gene31545.t1 AT2G19070 24.018 433 271 15 59 462 40 443 3.50e-18 87.4
MS.gene31545.t1 AT3G48720 22.170 424 285 13 54 467 41 429 1.20e-17 85.5
MS.gene31545.t1 AT5G38130 23.840 474 304 19 9 463 16 451 2.01e-17 85.1
MS.gene31545.t1 AT3G29690 30.201 149 98 2 319 466 31 174 6.29e-17 79.0
MS.gene31545.t1 AT3G50300 25.701 428 257 17 17 422 4 392 5.59e-16 80.5
MS.gene31545.t1 AT5G42830 24.664 446 274 20 36 464 36 436 3.25e-15 78.2
MS.gene31545.t1 AT5G41040 23.269 361 239 11 71 422 63 394 6.65e-15 77.0
MS.gene31545.t1 AT3G50280 25.176 425 257 16 20 422 7 392 6.95e-15 77.0
MS.gene31545.t1 AT5G41040 23.269 361 239 11 71 422 79 410 9.67e-15 76.6
MS.gene31545.t1 AT3G29636 29.534 193 79 7 265 455 30 167 2.26e-13 69.3
MS.gene31545.t1 AT5G01210 25.455 330 210 14 161 464 141 460 7.28e-12 67.8
MS.gene31545.t1 AT1G31490 22.539 386 233 12 58 422 43 383 1.60e-11 66.6

Find 98 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTCTTTGACATTTCT+TGG 0.109669 2.4:-11320052 MS.gene31545:CDS
AACTCTGTTAAAATGGTTTC+TGG 0.155098 2.4:-11318976 MS.gene31545:CDS
TCATTACCGAAAACTTATTT+TGG 0.167042 2.4:-11319171 MS.gene31545:CDS
ACCAGGTAACTCTGTTAAAA+TGG 0.224927 2.4:-11318983 MS.gene31545:CDS
GGAGGGGTGTTATGGGAATT+TGG 0.229278 2.4:+11319876 None:intergenic
GGTAGAAGAAGATGCGTTTA+AGG 0.233797 2.4:+11320012 None:intergenic
GATGTTTATGAGACTGATTT+TGG 0.265860 2.4:-11318940 MS.gene31545:CDS
AAACGTTGATGCCTGATTAT+AGG 0.285361 2.4:-11319017 MS.gene31545:CDS
ATTCACAAGATGCTCTAAAT+TGG 0.287826 2.4:-11319773 MS.gene31545:CDS
GTTGGTGATGGAAGTGAATT+TGG 0.295109 2.4:+11320086 None:intergenic
GAAGCCAGAGTTTGGTAAAA+TGG 0.300262 2.4:+11319668 None:intergenic
GTAAAGAGAGATGAGTTAAT+TGG 0.307415 2.4:-11319120 MS.gene31545:CDS
TGCACTACATCAGATTTCTT+TGG 0.324816 2.4:+11318907 None:intergenic
TTTATTATTTCCCTATAATC+AGG 0.339043 2.4:+11319006 None:intergenic
TTGTAACATGTTCCTTGATT+TGG 0.350808 2.4:-11319278 MS.gene31545:CDS
GATTTCATCAATATCTATAA+AGG 0.352392 2.4:-11318790 MS.gene31545:CDS
GTATATAAGGAGGGGTGTTA+TGG 0.354673 2.4:+11319868 None:intergenic
AACGTTGATGCCTGATTATA+GGG 0.364124 2.4:-11319016 MS.gene31545:CDS
TCTTGTAAGTAGGTGAGTTT+AGG 0.364713 2.4:+11319471 None:intergenic
GTTGTTGTTTGCTATAGCTT+TGG 0.366415 2.4:+11319566 None:intergenic
GAAGAAGTGTTGGAGGGTTA+AGG 0.375241 2.4:+11319926 None:intergenic
TTATAGATATTGATGAAATC+AGG 0.399480 2.4:+11318793 None:intergenic
GTATGAGGTGAAGGCAAGTT+AGG 0.400483 2.4:+11319738 None:intergenic
CATACAGAGAAGCCAGAGTT+TGG 0.410447 2.4:+11319660 None:intergenic
TATATAAGGAGGGGTGTTAT+GGG 0.421407 2.4:+11319869 None:intergenic
ATTTGGAGGGATGATGAGGT+TGG 0.424629 2.4:+11319893 None:intergenic
GGAAAGTGAGTGTTTGAGAA+TGG 0.424878 2.4:+11319947 None:intergenic
GATGAGTTGGATGTGGAAAA+TGG 0.428885 2.4:+11319991 None:intergenic
GATGATGAGGTTGGAGGTGA+AGG 0.429029 2.4:+11319902 None:intergenic
TTTAAGAGTGATGCTTTGTT+GGG 0.435490 2.4:-11319045 MS.gene31545:CDS
TCATCAAGGTAACGTATATA+AGG 0.436544 2.4:+11319855 None:intergenic
TCTCTTTCTGATTGTAGAGA+TGG 0.439448 2.4:-11318862 MS.gene31545:CDS
GTCTCATAAACATCAAGTTT+AGG 0.448315 2.4:+11318949 None:intergenic
AGGTGGAATTGAAGTTGGTT+TGG 0.449191 2.4:-11318836 MS.gene31545:CDS
TGAGAATGGGAAGTGTTGTT+TGG 0.450918 2.4:+11319961 None:intergenic
GTAGAAGAAGATGCGTTTAA+GGG 0.457685 2.4:+11320013 None:intergenic
TACCATACAAAACCAAATCA+AGG 0.462671 2.4:+11319266 None:intergenic
ACTCTGTTAAAATGGTTTCT+GGG 0.468209 2.4:-11318975 MS.gene31545:CDS
GAAAGTGAGTGTTTGAGAAT+GGG 0.469129 2.4:+11319948 None:intergenic
CTTTCTGATTGTAGAGATGG+TGG 0.471103 2.4:-11318859 MS.gene31545:CDS
AGGTGAAGGGGAAGAAGTGT+TGG 0.471582 2.4:+11319916 None:intergenic
AAAGAAAGTGAGAGGGAGAA+TGG 0.474809 2.4:+11320064 None:intergenic
GGTGGAGGTGGAATTGAAGT+TGG 0.477895 2.4:-11318841 MS.gene31545:CDS
TGGTAAAATGGTGATTTGAA+TGG 0.481448 2.4:+11319680 None:intergenic
GGGAATTTGGAGGGATGATG+AGG 0.494796 2.4:+11319889 None:intergenic
GAAGAAGATGCGTTTAAGGG+GGG 0.500670 2.4:+11320016 None:intergenic
ATCAGAAAGAGAAATCGAAC+TGG 0.507399 2.4:+11318873 None:intergenic
AAAGTGAGAGGGAGAATGGT+TGG 0.508062 2.4:+11320068 None:intergenic
TACATGTATCGTTCCTCTCA+TGG 0.508285 2.4:-11319703 MS.gene31545:CDS
TAGAAGAAGATGCGTTTAAG+GGG 0.508756 2.4:+11320014 None:intergenic
GGTGATGGAAGTGAATTTGG+TGG 0.516073 2.4:+11320089 None:intergenic
GATGAGTTAATTGGAAAAGA+CGG 0.519523 2.4:-11319111 MS.gene31545:CDS
TAGGTGAGTTTAGGATCCGT+TGG 0.520040 2.4:+11319480 None:intergenic
TGATGAGGTTGGAGGTGAAG+GGG 0.522375 2.4:+11319904 None:intergenic
GGGGTGTTATGGGAATTTGG+AGG 0.522455 2.4:+11319879 None:intergenic
TGAAGGGGAAGAAGTGTTGG+AGG 0.527422 2.4:+11319919 None:intergenic
ATGATGAGGTTGGAGGTGAA+GGG 0.530666 2.4:+11319903 None:intergenic
AGAGGGAGAATGGTTGGTGA+TGG 0.530934 2.4:+11320074 None:intergenic
AGAAGAAGATGCGTTTAAGG+GGG 0.531371 2.4:+11320015 None:intergenic
AGGTGAGTTTAGGATCCGTT+GGG 0.537324 2.4:+11319481 None:intergenic
TTTAAACACGTTGTTGCAGA+CGG 0.540631 2.4:-11319630 MS.gene31545:CDS
GATTGTAGAGATGGTGGAGG+TGG 0.541712 2.4:-11318853 MS.gene31545:CDS
TGGAGGGATGATGAGGTTGG+AGG 0.545689 2.4:+11319896 None:intergenic
GTTTGGAGGAAGTGATGAGT+TGG 0.551364 2.4:+11319978 None:intergenic
TTGTCTTGCATCTTATATTG+TGG 0.552776 2.4:-11319145 MS.gene31545:CDS
AATCTATCTCTTTCATGAGA+AGG 0.553262 2.4:+11319513 None:intergenic
AAGAAGATGCGTTTAAGGGG+GGG 0.554836 2.4:+11320017 None:intergenic
TAACGAAACAGTAACTATGA+AGG 0.559253 2.4:-11320138 MS.gene31545:CDS
AATATCTATAAAGGACAACT+TGG 0.562582 2.4:-11318781 MS.gene31545:CDS
TGGAAAAGACGGTATTGTTG+TGG 0.564685 2.4:-11319100 MS.gene31545:CDS
GAAATGTCAAAGAAAGTGAG+AGG 0.565539 2.4:+11320056 None:intergenic
AGGAAGTGATGAGTTGGATG+TGG 0.573881 2.4:+11319984 None:intergenic
TGCATCTCGAACGAGACTTG+TGG 0.575560 2.4:+11319416 None:intergenic
CAAGGTAACGTATATAAGGA+GGG 0.577627 2.4:+11319859 None:intergenic
AATTTGATCTCGTGATGTTG+AGG 0.584229 2.4:+11320167 None:intergenic
AAATGTCAAAGAAAGTGAGA+GGG 0.588095 2.4:+11320057 None:intergenic
TGGCAGCAAATGCTATTGAA+AGG 0.588748 2.4:-11319080 MS.gene31545:CDS
GGGTGTTATGGGAATTTGGA+GGG 0.588819 2.4:+11319880 None:intergenic
TCAAGGTAACGTATATAAGG+AGG 0.593641 2.4:+11319858 None:intergenic
GAATGGGAAGTGTTGTTTGG+AGG 0.595204 2.4:+11319964 None:intergenic
TCACCTCATACAGAACAAAA+CGG 0.603095 2.4:-11319726 MS.gene31545:CDS
ATCTTGTATATCTTGTAAGT+AGG 0.603551 2.4:+11319461 None:intergenic
TGAGGATTCAGCAATGGTGA+AGG 0.609931 2.4:+11319821 None:intergenic
TCATGAGAAGGAAGATCAAG+AGG 0.612643 2.4:+11319525 None:intergenic
GATGGAAGTGAATTTGGTGG+TGG 0.624086 2.4:+11320092 None:intergenic
TCTGATTGTAGAGATGGTGG+AGG 0.625713 2.4:-11318856 MS.gene31545:CDS
TGAGAAGGAAGATCAAGAGG+TGG 0.626715 2.4:+11319528 None:intergenic
GAAGGGGAAGAAGTGTTGGA+GGG 0.639354 2.4:+11319920 None:intergenic
TAGATTACTAAAACACCCAA+CGG 0.650878 2.4:-11319496 MS.gene31545:CDS
AAGGCAAGTTAGGAACAAGA+TGG 0.656225 2.4:+11319748 None:intergenic
GTCTGCTGAGGATTCAGCAA+TGG 0.656353 2.4:+11319815 None:intergenic
AGGAGATAGAGTCTTCATCA+AGG 0.656629 2.4:+11319841 None:intergenic
TAGTTTAGTATTGAGTCGTG+AGG 0.661773 2.4:-11319370 MS.gene31545:CDS
GTGATTTGAATGGCCATGAG+AGG 0.670330 2.4:+11319690 None:intergenic
TATAGGGAAATAATAAAACC+AGG 0.671327 2.4:-11319000 MS.gene31545:CDS
AAGGTAACGTATATAAGGAG+GGG 0.677863 2.4:+11319860 None:intergenic
GAGAATGTTGAAGTCTGCTG+AGG 0.705294 2.4:+11319803 None:intergenic
ACAACAAAAGTTGACATGTG+TGG 0.716536 2.4:+11319297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATCATTTTATGAAATTTT+GGG - chr2.4:11319334-11319353 MS.gene31545:CDS 15.0%
!!! TTCATCATTTTATGAAATTT+TGG - chr2.4:11319333-11319352 MS.gene31545:CDS 15.0%
!! GATTTCATCAATATCTATAA+AGG - chr2.4:11320142-11320161 MS.gene31545:CDS 20.0%
!! TTATAGATATTGATGAAATC+AGG + chr2.4:11320142-11320161 None:intergenic 20.0%
!! TTTATTATTTCCCTATAATC+AGG + chr2.4:11319929-11319948 None:intergenic 20.0%
!!! AGATATACAAGATTTTGTAT+TGG - chr2.4:11319481-11319500 MS.gene31545:CDS 20.0%
!!! CAATTTCCAAAATAAGTTTT+CGG + chr2.4:11319770-11319789 None:intergenic 20.0%
! AAGTTCAAAAAATGAAGAGA+TGG - chr2.4:11319585-11319604 MS.gene31545:CDS 25.0%
! AATATCTATAAAGGACAACT+TGG - chr2.4:11320151-11320170 MS.gene31545:CDS 25.0%
! AGTTCAAAAAATGAAGAGAT+GGG - chr2.4:11319586-11319605 MS.gene31545:CDS 25.0%
! ATCTTGTATATCTTGTAAGT+AGG + chr2.4:11319474-11319493 None:intergenic 25.0%
! TATAGGGAAATAATAAAACC+AGG - chr2.4:11319932-11319951 MS.gene31545:CDS 25.0%
!! AGATTTTGTATTGGAAATCA+TGG - chr2.4:11319490-11319509 MS.gene31545:CDS 25.0%
!! TCATTACCGAAAACTTATTT+TGG - chr2.4:11319761-11319780 MS.gene31545:CDS 25.0%
!!! ATGTTTATGAGACTGATTTT+GGG - chr2.4:11319993-11320012 MS.gene31545:CDS 25.0%
AAATGTCAAAGAAAGTGAGA+GGG + chr2.4:11318878-11318897 None:intergenic 30.0%
AACTCTGTTAAAATGGTTTC+TGG - chr2.4:11319956-11319975 MS.gene31545:CDS 30.0%
AATCTATCTCTTTCATGAGA+AGG + chr2.4:11319422-11319441 None:intergenic 30.0%
ACTCTGTTAAAATGGTTTCT+GGG - chr2.4:11319957-11319976 MS.gene31545:CDS 30.0%
GATGAGTTAATTGGAAAAGA+CGG - chr2.4:11319821-11319840 MS.gene31545:CDS 30.0%
GTAAAGAGAGATGAGTTAAT+TGG - chr2.4:11319812-11319831 MS.gene31545:CDS 30.0%
GTCTCATAAACATCAAGTTT+AGG + chr2.4:11319986-11320005 None:intergenic 30.0%
TAACGAAACAGTAACTATGA+AGG - chr2.4:11318794-11318813 MS.gene31545:CDS 30.0%
TACCATACAAAACCAAATCA+AGG + chr2.4:11319669-11319688 None:intergenic 30.0%
TAGATTACTAAAACACCCAA+CGG - chr2.4:11319436-11319455 MS.gene31545:CDS 30.0%
TCACTTTCTTTGACATTTCT+TGG - chr2.4:11318880-11318899 MS.gene31545:CDS 30.0%
TCATCAAGGTAACGTATATA+AGG + chr2.4:11319080-11319099 None:intergenic 30.0%
TGGTAAAATGGTGATTTGAA+TGG + chr2.4:11319255-11319274 None:intergenic 30.0%
TTGTAACATGTTCCTTGATT+TGG - chr2.4:11319654-11319673 MS.gene31545:CDS 30.0%
TTGTCTTGCATCTTATATTG+TGG - chr2.4:11319787-11319806 MS.gene31545:CDS 30.0%
! ATTCACAAGATGCTCTAAAT+TGG - chr2.4:11319159-11319178 MS.gene31545:CDS 30.0%
! GTTTTCGGTAATGAAAATTC+AGG + chr2.4:11319755-11319774 None:intergenic 30.0%
! TTTAAGAGTGATGCTTTGTT+GGG - chr2.4:11319887-11319906 MS.gene31545:CDS 30.0%
!! GATGTTTATGAGACTGATTT+TGG - chr2.4:11319992-11320011 MS.gene31545:CDS 30.0%
!! TTTTAAGAGTGATGCTTTGT+TGG - chr2.4:11319886-11319905 MS.gene31545:CDS 30.0%
!!! TTCCTTGATTTGGTTTTGTA+TGG - chr2.4:11319664-11319683 MS.gene31545:CDS 30.0%
AAACGTTGATGCCTGATTAT+AGG - chr2.4:11319915-11319934 MS.gene31545:CDS 35.0%
AACGTTGATGCCTGATTATA+GGG - chr2.4:11319916-11319935 MS.gene31545:CDS 35.0%
AAGGTAACGTATATAAGGAG+GGG + chr2.4:11319075-11319094 None:intergenic 35.0%
AATTTGATCTCGTGATGTTG+AGG + chr2.4:11318768-11318787 None:intergenic 35.0%
ACAACAAAAGTTGACATGTG+TGG + chr2.4:11319638-11319657 None:intergenic 35.0%
ACCAGGTAACTCTGTTAAAA+TGG - chr2.4:11319949-11319968 MS.gene31545:CDS 35.0%
ATCAGAAAGAGAAATCGAAC+TGG + chr2.4:11320062-11320081 None:intergenic 35.0%
CAAGGTAACGTATATAAGGA+GGG + chr2.4:11319076-11319095 None:intergenic 35.0%
GAAAGTGAGTGTTTGAGAAT+GGG + chr2.4:11318987-11319006 None:intergenic 35.0%
GAAATGTCAAAGAAAGTGAG+AGG + chr2.4:11318879-11318898 None:intergenic 35.0%
GTAGAAGAAGATGCGTTTAA+GGG + chr2.4:11318922-11318941 None:intergenic 35.0%
TAGAAGAAGATGCGTTTAAG+GGG + chr2.4:11318921-11318940 None:intergenic 35.0%
TCAAGGTAACGTATATAAGG+AGG + chr2.4:11319077-11319096 None:intergenic 35.0%
TCACCTCATACAGAACAAAA+CGG - chr2.4:11319206-11319225 MS.gene31545:CDS 35.0%
TCTCTTTCTGATTGTAGAGA+TGG - chr2.4:11320070-11320089 MS.gene31545:CDS 35.0%
TCTTGTAAGTAGGTGAGTTT+AGG + chr2.4:11319464-11319483 None:intergenic 35.0%
TGCACTACATCAGATTTCTT+TGG + chr2.4:11320028-11320047 None:intergenic 35.0%
TTTAAACACGTTGTTGCAGA+CGG - chr2.4:11319302-11319321 MS.gene31545:CDS 35.0%
! ATCACCATTTTACCAAACTC+TGG - chr2.4:11319260-11319279 MS.gene31545:CDS 35.0%
! TAGTTTAGTATTGAGTCGTG+AGG - chr2.4:11319562-11319581 MS.gene31545:CDS 35.0%
! TTTTGTTCTGTATGAGGTGA+AGG + chr2.4:11319206-11319225 None:intergenic 35.0%
!! ACCATTTTAACAGAGTTACC+TGG + chr2.4:11319953-11319972 None:intergenic 35.0%
!! GTTGTTGTTTGCTATAGCTT+TGG + chr2.4:11319369-11319388 None:intergenic 35.0%
!! TATATAAGGAGGGGTGTTAT+GGG + chr2.4:11319066-11319085 None:intergenic 35.0%
!! TTATGAGACTGATTTTGGGT+GGG - chr2.4:11319997-11320016 MS.gene31545:CDS 35.0%
!! TTTATGAGACTGATTTTGGG+TGG - chr2.4:11319996-11320015 MS.gene31545:CDS 35.0%
AAAGAAAGTGAGAGGGAGAA+TGG + chr2.4:11318871-11318890 None:intergenic 40.0%
AAGGCAAGTTAGGAACAAGA+TGG + chr2.4:11319187-11319206 None:intergenic 40.0%
AGAAGAAGATGCGTTTAAGG+GGG + chr2.4:11318920-11318939 None:intergenic 40.0%
AGGAGATAGAGTCTTCATCA+AGG + chr2.4:11319094-11319113 None:intergenic 40.0%
CTTTCTGATTGTAGAGATGG+TGG - chr2.4:11320073-11320092 MS.gene31545:CDS 40.0%
GAAGCCAGAGTTTGGTAAAA+TGG + chr2.4:11319267-11319286 None:intergenic 40.0%
GGAAAGTGAGTGTTTGAGAA+TGG + chr2.4:11318988-11319007 None:intergenic 40.0%
GGTAGAAGAAGATGCGTTTA+AGG + chr2.4:11318923-11318942 None:intergenic 40.0%
TACATGTATCGTTCCTCTCA+TGG - chr2.4:11319229-11319248 MS.gene31545:CDS 40.0%
TCATGAGAAGGAAGATCAAG+AGG + chr2.4:11319410-11319429 None:intergenic 40.0%
TGGAAAAGACGGTATTGTTG+TGG - chr2.4:11319832-11319851 MS.gene31545:CDS 40.0%
TGGCAGCAAATGCTATTGAA+AGG - chr2.4:11319852-11319871 MS.gene31545:CDS 40.0%
! AGGTGGAATTGAAGTTGGTT+TGG - chr2.4:11320096-11320115 MS.gene31545:CDS 40.0%
! GATGAGTTGGATGTGGAAAA+TGG + chr2.4:11318944-11318963 None:intergenic 40.0%
!! GTACCGTTTTGTTCTGTATG+AGG + chr2.4:11319212-11319231 None:intergenic 40.0%
!! GTATATAAGGAGGGGTGTTA+TGG + chr2.4:11319067-11319086 None:intergenic 40.0%
!! GTTGGTGATGGAAGTGAATT+TGG + chr2.4:11318849-11318868 None:intergenic 40.0%
!! TATGAGACTGATTTTGGGTG+GGG - chr2.4:11319998-11320017 MS.gene31545:CDS 40.0%
!! TGAGAATGGGAAGTGTTGTT+TGG + chr2.4:11318974-11318993 None:intergenic 40.0%
AAAGTGAGAGGGAGAATGGT+TGG + chr2.4:11318867-11318886 None:intergenic 45.0%
AAGAAGATGCGTTTAAGGGG+GGG + chr2.4:11318918-11318937 None:intergenic 45.0%
ATGATGAGGTTGGAGGTGAA+GGG + chr2.4:11319032-11319051 None:intergenic 45.0%
ATTTGGAGGGATGATGAGGT+TGG + chr2.4:11319042-11319061 None:intergenic 45.0%
CATACAGAGAAGCCAGAGTT+TGG + chr2.4:11319275-11319294 None:intergenic 45.0%
GAAGAAGATGCGTTTAAGGG+GGG + chr2.4:11318919-11318938 None:intergenic 45.0%
GAGAATGTTGAAGTCTGCTG+AGG + chr2.4:11319132-11319151 None:intergenic 45.0%
GTATGAGGTGAAGGCAAGTT+AGG + chr2.4:11319197-11319216 None:intergenic 45.0%
GTGATTTGAATGGCCATGAG+AGG + chr2.4:11319245-11319264 None:intergenic 45.0%
GTTTGGAGGAAGTGATGAGT+TGG + chr2.4:11318957-11318976 None:intergenic 45.0%
TGAGAAGGAAGATCAAGAGG+TGG + chr2.4:11319407-11319426 None:intergenic 45.0%
TGAGGATTCAGCAATGGTGA+AGG + chr2.4:11319114-11319133 None:intergenic 45.0%
! AGGAAGTGATGAGTTGGATG+TGG + chr2.4:11318951-11318970 None:intergenic 45.0%
! AGGTGAGTTTAGGATCCGTT+GGG + chr2.4:11319454-11319473 None:intergenic 45.0%
! GATGGAAGTGAATTTGGTGG+TGG + chr2.4:11318843-11318862 None:intergenic 45.0%
! GGGTGTTATGGGAATTTGGA+GGG + chr2.4:11319055-11319074 None:intergenic 45.0%
! TAGGTGAGTTTAGGATCCGT+TGG + chr2.4:11319455-11319474 None:intergenic 45.0%
! TCTGATTGTAGAGATGGTGG+AGG - chr2.4:11320076-11320095 MS.gene31545:CDS 45.0%
!! GAAGAAGTGTTGGAGGGTTA+AGG + chr2.4:11319009-11319028 None:intergenic 45.0%
!! GAATGGGAAGTGTTGTTTGG+AGG + chr2.4:11318971-11318990 None:intergenic 45.0%
!! GGTGATGGAAGTGAATTTGG+TGG + chr2.4:11318846-11318865 None:intergenic 45.0%
GATGATGAGGTTGGAGGTGA+AGG + chr2.4:11319033-11319052 None:intergenic 50.0%
GGGAATTTGGAGGGATGATG+AGG + chr2.4:11319046-11319065 None:intergenic 50.0%
GGTGGAGGTGGAATTGAAGT+TGG - chr2.4:11320091-11320110 MS.gene31545:CDS 50.0%
GTCTGCTGAGGATTCAGCAA+TGG + chr2.4:11319120-11319139 None:intergenic 50.0%
TGATGAGGTTGGAGGTGAAG+GGG + chr2.4:11319031-11319050 None:intergenic 50.0%
TGCATCTCGAACGAGACTTG+TGG + chr2.4:11319519-11319538 None:intergenic 50.0%
! AGGTGAAGGGGAAGAAGTGT+TGG + chr2.4:11319019-11319038 None:intergenic 50.0%
! GGGGTGTTATGGGAATTTGG+AGG + chr2.4:11319056-11319075 None:intergenic 50.0%
!! AGAGGGAGAATGGTTGGTGA+TGG + chr2.4:11318861-11318880 None:intergenic 50.0%
!! GAAGGGGAAGAAGTGTTGGA+GGG + chr2.4:11319015-11319034 None:intergenic 50.0%
!! GATTGTAGAGATGGTGGAGG+TGG - chr2.4:11320079-11320098 MS.gene31545:CDS 50.0%
!! GGAGGGGTGTTATGGGAATT+TGG + chr2.4:11319059-11319078 None:intergenic 50.0%
!! TGAAGGGGAAGAAGTGTTGG+AGG + chr2.4:11319016-11319035 None:intergenic 50.0%
TGGAGGGATGATGAGGTTGG+AGG + chr2.4:11319039-11319058 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 11318762 11320192 11318762 ID=MS.gene31545
chr2.4 mRNA 11318762 11320192 11318762 ID=MS.gene31545.t1;Parent=MS.gene31545
chr2.4 exon 11318762 11320192 11318762 ID=MS.gene31545.t1.exon1;Parent=MS.gene31545.t1
chr2.4 CDS 11318762 11320192 11318762 ID=cds.MS.gene31545.t1;Parent=MS.gene31545.t1
Gene Sequence

>MS.gene31545

ATGCCTCAACATCACGAGATCAAATTCTATCATAACGAAACAGTAACTATGAAGGTGATAGAGCAGAGTCAAGTTTCACCACCACCAAATTCACTTCCATCACCAACCATTCTCCCTCTCACTTTCTTTGACATTTCTTGGTTTTACTGCAAACCCCCCCTTAAACGCATCTTCTTCTACCATTTTCCACATCCAACTCATCACTTCCTCCAAACAACACTTCCCATTCTCAAACACTCACTTTCCTTAACCCTCCAACACTTCTTCCCCTTCACCTCCAACCTCATCATCCCTCCAAATTCCCATAACACCCCTCCTTATATACGTTACCTTGATGAAGACTCTATCTCCTTCACCATTGCTGAATCCTCAGCAGACTTCAACATTCTCATATCTGATTCACAAGATGCTCTAAATTGGCACCATCTTGTTCCTAACTTGCCTTCACCTCATACAGAACAAAACGGTACATGTATCGTTCCTCTCATGGCCATTCAAATCACCATTTTACCAAACTCTGGCTTCTCTGTATGTCTCGCGTTTAAACACGTTGTTGCAGACGGAAAATCACTTCATCATTTTATGAAATTTTGGGCATTTGTTTCCAAAGCTATAGCAAACAACAACGATTTGTCTCATTCTCCACCTCTTGATCTTCCTTCTCATGAAAGAGATAGATTACTAAAACACCCAACGGATCCTAAACTCACCTACTTACAAGATATACAAGATTTTGTATTGGAAATCATGGAATCCACAAGTCTCGTTCGAGATGCATCTTACGCTAACAAAGTACGAACTAGTTTAGTATTGAGTCGTGAGGAAGTTCAAAAAATGAAGAGATGGGTCACTGATAAATGTAAAGACTCAACACCACACATGTCAACTTTTGTTGTAACATGTTCCTTGATTTGGTTTTGTATGGTAAAATCAGAGCAAAGAAAAAGTGATCTAGTGTACTTCTTGTTTTTTGCAGATTGTCGTGATCGTCCTGAATTTTCATTACCGAAAACTTATTTTGGAAATTGTCTTGCATCTTATATTGTGGCTGTAAAGAGAGATGAGTTAATTGGAAAAGACGGTATTGTTGTGGCAGCAAATGCTATTGAAAGGAAGATAAGAGATTTTAAGAGTGATGCTTTGTTGGGAGTTGAAACGTTGATGCCTGATTATAGGGAAATAATAAAACCAGGTAACTCTGTTAAAATGGTTTCTGGGTCACCTAAACTTGATGTTTATGAGACTGATTTTGGGTGGGGAAAACCAAAGAAATCTGATGTAGTGCATATTGATTCGTCCAGTTCGATTTCTCTTTCTGATTGTAGAGATGGTGGAGGTGGAATTGAAGTTGGTTTGGCTCTTGAGATGTCTCAAATGCCTGATTTCATCAATATCTATAAAGGACAACTTGGTGATATTTGTAGCATGTGA
Protein sequence

>MS.gene31545.t1

MPQHHEIKFYHNETVTMKVIEQSQVSPPPNSLPSPTILPLTFFDISWFYCKPPLKRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFTSNLIIPPNSHNTPPYIRYLDEDSISFTIAESSADFNILISDSQDALNWHHLVPNLPSPHTEQNGTCIVPLMAIQITILPNSGFSVCLAFKHVVADGKSLHHFMKFWAFVSKAIANNNDLSHSPPLDLPSHERDRLLKHPTDPKLTYLQDIQDFVLEIMESTSLVRDASYANKVRTSLVLSREEVQKMKRWVTDKCKDSTPHMSTFVVTCSLIWFCMVKSEQRKSDLVYFLFFADCRDRPEFSLPKTYFGNCLASYIVAVKRDELIGKDGIVVAANAIERKIRDFKSDALLGVETLMPDYREIIKPGNSVKMVSGSPKLDVYETDFGWGKPKKSDVVHIDSSSSISLSDCRDGGGGIEVGLALEMSQMPDFINIYKGQLGDICSM