AlfalfaGEDB | MS.gene40205

M. sativa cultivar XinJiangDaYe / MS.gene40205

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40205.t1	GAU14324.1	84.1	88	12	2	4	90	1	87	2.30E-32	147.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40205.t1	G7J4L6	83.9	87	8	1	4	90	1	81	1.1e-31	145.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene40205	0.81473	1.33E-51	-1.69E-46
MS.gene049369	MS.gene40205	0.80166	8.11E-49	-1.69E-46
MS.gene049609	MS.gene40205	0.836711	7.97E-57	-1.69E-46
MS.gene049633	MS.gene40205	0.817758	2.79E-52	-1.69E-46
MS.gene049805	MS.gene40205	0.832452	9.38E-56	-1.69E-46
MS.gene050432	MS.gene40205	0.813274	2.78E-51	-1.69E-46
MS.gene050593	MS.gene40205	0.836012	1.20E-56	-1.69E-46
MS.gene050670	MS.gene40205	0.810986	8.78E-51	-1.69E-46
MS.gene050747	MS.gene40205	0.825244	5.21E-54	-1.69E-46
MS.gene050772	MS.gene40205	0.84081	6.95E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40205.t1	MTR_3g111360	83.908	87	8	1	4	90	1	81	1.78e-46	143
MS.gene40205.t1	MTR_5g067050	64.286	70	21	3	22	89	13	80	7.02e-23	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 17 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACACTTATAGAACCGT+TGG	0.561342	3.2:-89053626	MS.gene40205:CDS
AACACTTATAGAACCGTTGG+TGG	0.530511	3.2:-89053623	MS.gene40205:CDS
AATTGAAGCTTCCATGGAAG+AGG	0.536567	3.2:-89053655	MS.gene40205:CDS
AGAAGCAAAACAGGTGGAGG+AGG	0.521376	3.2:-89053704	MS.gene40205:CDS
ATAAGAAGCAAAACAGGTGG+AGG	0.576069	3.2:-89053707	MS.gene40205:CDS
ATCATACCTAAAACCACCAA+CGG	0.621720	3.2:+89053610	None:intergenic
CCTATAAGAAGCAAAACAGG+TGG	0.657762	3.2:-89053710	MS.gene40205:CDS
GAAGCAAAACAGGTGGAGGA+GGG	0.645020	3.2:-89053703	MS.gene40205:CDS
GACGAAGAATCTTTAGGTCG+CGG	0.579606	3.2:-89053539	MS.gene40205:CDS
GAGAACGACGAAGAATCTTT+AGG	0.441691	3.2:-89053545	MS.gene40205:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACACTTATAGAACCGT+TGG	-	chr3.2:89053604-89053623	MS.gene40205:CDS	35.0%
ATCATACCTAAAACCACCAA+CGG	+	chr3.2:89053623-89053642	None:intergenic	35.0%
TCTCCTATAAGAAGCAAAAC+AGG	-	chr3.2:89053517-89053536	MS.gene40205:CDS	35.0%
AACACTTATAGAACCGTTGG+TGG	-	chr3.2:89053607-89053626	MS.gene40205:CDS	40.0%
AATTGAAGCTTCCATGGAAG+AGG	-	chr3.2:89053575-89053594	MS.gene40205:CDS	40.0%
ATAAGAAGCAAAACAGGTGG+AGG	-	chr3.2:89053523-89053542	MS.gene40205:CDS	40.0%
CCTATAAGAAGCAAAACAGG+TGG	-	chr3.2:89053520-89053539	MS.gene40205:CDS	40.0%
GAGAACGACGAAGAATCTTT+AGG	-	chr3.2:89053685-89053704	MS.gene40205:CDS	40.0%
GTCTCAAATTGAAGCTTCCA+TGG	-	chr3.2:89053569-89053588	MS.gene40205:CDS	40.0%
TTGCTTCTTATAGGAGACGA+TGG	+	chr3.2:89053514-89053533	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	89053490	89053762	89053490	ID=MS.gene40205
chr3.2	mRNA	89053490	89053762	89053490	ID=MS.gene40205.t1;Parent=MS.gene40205
chr3.2	exon	89053490	89053762	89053490	ID=MS.gene40205.t1.exon1;Parent=MS.gene40205.t1
chr3.2	CDS	89053490	89053762	89053490	ID=cds.MS.gene40205.t1;Parent=MS.gene40205.t1

Gene Sequence	>MS.gene40205 ATGGAAAGTTTGGAAACAAGTCCATCGTCTCCTATAAGAAGCAAAACAGGTGGAGGAGGGTTGCTTTCATGCTTTGGGCGTCTCAAATTGAAGCTTCCATGGAAGAGGAGAACAAACAACACTTATAGAACCGTTGGTGGTTTTAGGTATGATCCTTTAAGCTATGCTCAAAATTTTGATGATGGTAATTTGGAGGAGAACGACGAAGAATCTTTAGGTCGCGGTTTCTCTGCTAGATATGCTGCACCTTCAGCTAAAACACTCAAGCAATGA
Protein sequence	>MS.gene40205.t1 MESLETSPSSPIRSKTGGGGLLSCFGRLKLKLPWKRRTNNTYRTVGGFRYDPLSYAQNFDDGNLEENDEESLGRGFSARYAAPSAKTLKQ