AlfalfaGEDB | MS.gene45403

M. sativa cultivar XinJiangDaYe / MS.gene45403

KEGG: -
GO: -
PFAM: PF14383.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45403.t1	XP_024638882.1	97.1	279	8	0	1	279	1	279	4.80E-150	540.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45403.t1	A0A396I9U6	97.1	279	8	0	1	279	1	279	3.5e-150	540.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene45403	0.815015	1.15E-51	-1.69E-46
MS.gene049151	MS.gene45403	0.806201	9.23E-50	-1.69E-46
MS.gene049153	MS.gene45403	0.815221	1.03E-51	-1.69E-46
MS.gene049260	MS.gene45403	0.803989	2.68E-49	-1.69E-46
MS.gene049346	MS.gene45403	0.811594	6.47E-51	-1.69E-46
MS.gene049758	MS.gene45403	0.841916	3.55E-58	-1.69E-46
MS.gene049915	MS.gene45403	0.828461	8.88E-55	-1.69E-46
MS.gene050099	MS.gene45403	0.804599	2.00E-49	-1.69E-46
MS.gene050128	MS.gene45403	0.836415	9.49E-57	-1.69E-46
MS.gene050226	MS.gene45403	0.806831	6.79E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45403.t1	MTR_4g088515	97.015	268	8	0	1	268	1	268	0.0	541

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45403.t1	AT4G26415	45.299	234	61	10	3	192	7	217	3.13e-44	152

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Find 59 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGCAATGGACATGC+AGG	0.491726	4.4:+24350919	MS.gene45403:CDS
AAACTAGCAATGGACATGCA+GGG	0.676573	4.4:+24350920	MS.gene45403:CDS
AAATGGAGGAAGAGATGGCA+AGG	0.533678	4.4:+24350483	MS.gene45403:CDS
AACAGTTGCTGGGGAGAACG+TGG	0.612915	4.4:+24350736	MS.gene45403:CDS
AACCAACAAAATAGTACTAT+TGG	0.366556	4.4:+24350332	MS.gene45403:CDS
AACGTGGTTTGGTGTAAACC+TGG	0.608504	4.4:+24350752	MS.gene45403:CDS
AATATAGTGGAATAAGGGGA+AGG	0.620558	4.4:+24350522	MS.gene45403:CDS
AATGAATATAGTGGAATAAG+GGG	0.579962	4.4:+24350518	MS.gene45403:CDS
ACATTGTTAGAAGAAGAAAT+AGG	0.529346	4.4:+24350954	MS.gene45403:CDS
ACCGGTTTCTCTAGAAGCTA+TGG	0.522607	4.4:+24351015	MS.gene45403:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCTGACAAAAAAGAG+AGG	+	chr4.4:24350828-24350847	MS.gene45403:CDS	30.0%
AGTTGTCACATTGCAAAAAA+GGG	-	chr4.4:24350412-24350431	None:intergenic	30.0%
CAAAATAGTACTATTGGCAA+TGG	+	chr4.4:24350338-24350357	MS.gene45403:CDS	30.0%
GTAGGAGACAAAATATAAGA+AGG	+	chr4.4:24350867-24350886	MS.gene45403:CDS	30.0%
AGAACCAAAGCTTGATGAAA+AGG	+	chr4.4:24350697-24350716	MS.gene45403:CDS	35.0%
ATGGAAGAGATTCCATGTAT+AGG	+	chr4.4:24350621-24350640	MS.gene45403:CDS	35.0%
ATTAGAAATGGAGGAAGAGA+TGG	+	chr4.4:24350478-24350497	MS.gene45403:CDS	35.0%
CTGACATATTAAGATCTGCA+AGG	+	chr4.4:24350564-24350583	MS.gene45403:CDS	35.0%
GAGTTGTCACATTGCAAAAA+AGG	-	chr4.4:24350413-24350432	None:intergenic	35.0%
GGAGACAAAATATAAGAAGG+AGG	+	chr4.4:24350870-24350889	MS.gene45403:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	24350239	24351078	24350239	ID=MS.gene45403
chr4.4	mRNA	24350239	24351078	24350239	ID=MS.gene45403.t1;Parent=MS.gene45403
chr4.4	exon	24350239	24351078	24350239	ID=MS.gene45403.t1.exon1;Parent=MS.gene45403.t1
chr4.4	CDS	24350239	24351078	24350239	ID=cds.MS.gene45403.t1;Parent=MS.gene45403.t1

Gene Sequence

>MS.gene45403

ATGCCATTCTTTCTCCTCAAGAACTCTTTGGGAGCCAAGATGAAGAAAGGCATAAGAACTTTCTGCAACACTGATGTGTCAACCTCAACTCTAAACCAACAAAATAGTACTATTGGCAATGGCATTGGCAACCATAGCCAAGTTGACATCACAAGCAGCAAGGTAAGCTCCCCTTTTTTGCAATGTGACAACTCAAATTCAAAGCAAAGCACACCAACATTAGAAGATCTTATACTACAATTAGAAATGGAGGAAGAGATGGCAAGGAAAGAAAAACTCAATGAATATAGTGGAATAAGGGGAAGGATGTCATGTGTTAACAACTCTGACATATTAAGATCTGCAAGGAATGCTTTGAATCAATATCCAAGGTTTTCACTTGATGGAAGAGATTCCATGTATAGGTCATCTTTTGGGACTATAGAAGGAAGAAGATCAGTTTGTAGTGAGATAAGTTTAGAACCAAAGCTTGATGAAAAGGTTATGTGTTTTCCACCAACAGTTGCTGGGGAGAACGTGGTTTGGTGTAAACCTGGTGTTGTGGCAAAGTTAATGGGTTTGGAAGCTATTCCAGTGTCAGTAGGTAGAAAAAGATCTGACAAAAAAGAGAGGATGAGTAGTGTTGATTGTAGGAGACAAAATATAAGAAGGAGGCCATTTGAGAGGCATGATTTGGAGAGAAAACTAGCAATGGACATGCAGGGTTATCGTGATCACATTGTTAGAAGAAGAAATAGGTCTGGTTTTTGCTCTAAAAATGGATATTGTATTATGAAACCGGTTTCTCTAGAAGCTATGGCAGGAGGTCCTAGTAGTTGGCAACCAAGGAGATATGTTTAG

Protein sequence

>MS.gene45403.t1

MPFFLLKNSLGAKMKKGIRTFCNTDVSTSTLNQQNSTIGNGIGNHSQVDITSSKVSSPFLQCDNSNSKQSTPTLEDLILQLEMEEEMARKEKLNEYSGIRGRMSCVNNSDILRSARNALNQYPRFSLDGRDSMYRSSFGTIEGRRSVCSEISLEPKLDEKVMCFPPTVAGENVVWCKPGVVAKLMGLEAIPVSVGRKRSDKKERMSSVDCRRQNIRRRPFERHDLERKLAMDMQGYRDHIVRRRNRSGFCSKNGYCIMKPVSLEAMAGGPSSWQPRRYV