AlfalfaGEDB | MS.gene48526

M. sativa cultivar XinJiangDaYe / MS.gene48526

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF13855.9 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48526.t1	XP_013447653.1	89.7	941	73	2	1	920	1	938	0.00E+00	1698.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48526.t1	Q9SX38	36.8	933	496	18	3	920	1	854	4.5e-161	570.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48526.t1	A0A072TW48	89.7	941	73	2	1	920	1	938	0.0e+00	1698.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene48526	0.819104	1.38E-52	-1.69E-46
MS.gene04918	MS.gene48526	0.808299	3.32E-50	-1.69E-46
MS.gene049254	MS.gene48526	0.822175	2.73E-53	-1.69E-46
MS.gene049283	MS.gene48526	0.826683	2.37E-54	-1.69E-46
MS.gene049368	MS.gene48526	0.813524	2.45E-51	-1.69E-46
MS.gene049452	MS.gene48526	0.838793	2.33E-57	-1.69E-46
MS.gene049499	MS.gene48526	0.832059	1.17E-55	-1.69E-46
MS.gene049801	MS.gene48526	0.81356	2.41E-51	-1.69E-46
MS.gene049983	MS.gene48526	0.882287	1.18E-70	-1.69E-46
MS.gene050414	MS.gene48526	0.80765	4.56E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48526.t1	MTR_7g015770	92.455	941	47	2	1	920	1	938	0.0	1738
MS.gene48526.t1	MTR_2g038510	47.941	947	438	15	3	918	1	923	0.0	836
MS.gene48526.t1	MTR_5g021080	35.233	965	514	29	3	916	1	905	7.06e-153	474
MS.gene48526.t1	MTR_5g027910	31.889	969	547	28	3	916	1	911	3.20e-129	413
MS.gene48526.t1	MTR_5g027870	30.920	967	554	27	3	916	1	906	2.57e-118	384
MS.gene48526.t1	MTR_5g027860	30.657	959	563	23	3	916	1	902	1.35e-115	376
MS.gene48526.t1	MTR_4g073840	31.638	983	510	35	3	890	1	916	4.59e-112	367
MS.gene48526.t1	MTR_3g011390	29.412	986	557	27	3	914	1	921	5.59e-111	364
MS.gene48526.t1	MTR_5g027900	29.637	965	567	23	3	916	1	904	1.57e-110	363
MS.gene48526.t1	MTR_5g027810	30.208	960	571	22	3	916	1	907	4.18e-110	362

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48526.t1	AT1G50180	37.014	951	469	17	3	920	1	854	0.0	558
MS.gene48526.t1	AT1G58390	36.837	942	532	18	3	920	1	903	4.48e-175	531
MS.gene48526.t1	AT1G58390	36.837	942	532	18	3	920	1	903	4.48e-175	531
MS.gene48526.t1	AT1G53350	36.392	948	528	24	3	920	1	903	3.32e-174	529
MS.gene48526.t1	AT5G43470	35.722	949	535	20	3	920	1	905	9.00e-174	528
MS.gene48526.t1	AT5G43470	35.722	949	535	20	3	920	1	905	9.00e-174	528
MS.gene48526.t1	AT5G43470	35.722	949	535	20	3	920	1	905	9.00e-174	528
MS.gene48526.t1	AT5G43470	35.722	949	535	20	3	920	1	905	9.00e-174	528
MS.gene48526.t1	AT5G48620	35.789	950	533	22	3	920	1	905	7.46e-173	526
MS.gene48526.t1	AT5G48620	35.789	950	533	22	3	920	1	905	7.46e-173	526

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Find 185 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGCTTATGATGCTG+AGG	0.600098	7.2:+82093990	MS.gene48526:CDS
AAACATGGTTTCAGTTGATA+AGG	0.380946	7.2:-82096362	None:intergenic
AAACTATCAATAAAGTAAGT+TGG	0.396521	7.2:+82097089	MS.gene48526:CDS
AAAGGAAACAATCAATGAAT+GGG	0.482096	7.2:+82096238	MS.gene48526:CDS
AAAGGCTTGCTTCACGAACC+AGG	0.470752	7.2:+82094720	MS.gene48526:CDS
AAAGTAAATTAATTCAGTTG+TGG	0.600307	7.2:+82096426	MS.gene48526:CDS
AAAGTGTGCTGGTTTGCCTT+TGG	0.422720	7.2:+82096184	MS.gene48526:CDS
AAAGTTAACTTTGAAAGTTG+TGG	0.556905	7.2:-82097526	None:intergenic
AAATCATTCAAGATTAAACT+TGG	0.437439	7.2:+82097850	MS.gene48526:CDS
AAATTGGTATGCTCAATAAA+TGG	0.297084	7.2:+82097643	MS.gene48526:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAGGTATTTCATGTAAT+AGG	-	chr7.2:82094955-82094974	None:intergenic	30.0%
AACTACAAACTGAACTAAAG+AGG	+	chr7.2:82093887-82093906	MS.gene48526:CDS	30.0%
AAGATATCTCAATGACTAGA+AGG	-	chr7.2:82095300-82095319	None:intergenic	30.0%
AATGGTTCATATTTGTGGAA+TGG	+	chr7.2:82094326-82094345	MS.gene48526:CDS	30.0%
AATGTATGTTGGAAGGAAAT+TGG	+	chr7.2:82097627-82097646	MS.gene48526:CDS	30.0%
ACATAAAGAAAGTTGTGGAA+TGG	+	chr7.2:82094277-82094296	MS.gene48526:CDS	30.0%
ACTGAAAAAGCTCAGAAAAT+TGG	+	chr7.2:82097285-82097304	MS.gene48526:CDS	30.0%
AGAAATGTAGAGTTGAAAGT+TGG	+	chr7.2:82096864-82096883	MS.gene48526:CDS	30.0%
AGGCTATTACATGAATCTTT+AGG	-	chr7.2:82095275-82095294	None:intergenic	30.0%
ATAACCTCTTACCTAATAAG+AGG	+	chr7.2:82096278-82096297	MS.gene48526:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	82093784	82097933	82093784	ID=MS.gene48526
chr7.2	mRNA	82093784	82097933	82093784	ID=MS.gene48526.t1;Parent=MS.gene48526
chr7.2	exon	82093784	82094810	82093784	ID=MS.gene48526.t1.exon1;Parent=MS.gene48526.t1
chr7.2	CDS	82093784	82094810	82093784	ID=cds.MS.gene48526.t1;Parent=MS.gene48526.t1
chr7.2	exon	82096135	82097306	82096135	ID=MS.gene48526.t1.exon2;Parent=MS.gene48526.t1
chr7.2	CDS	82096135	82097306	82096135	ID=cds.MS.gene48526.t1;Parent=MS.gene48526.t1
chr7.2	exon	82097370	82097933	82097370	ID=MS.gene48526.t1.exon3;Parent=MS.gene48526.t1
chr7.2	CDS	82097370	82097933	82097370	ID=cds.MS.gene48526.t1;Parent=MS.gene48526.t1

Gene Sequence

>MS.gene48526

ATGTTAATGGTTGAGTCAGTTGTGTCCTTTACAATTGAAAGGCTTGCTGACCTCCTAATTGAAGAGGCCAATTTGTTAAGTGGGGTAAGTGACCAAATCAAGAAACTACAAACTGAACTAAAGAGGATGCAATGCTTCTTAAGGGATGCTGAGAGAAAGCAGGATGAAGGTGGGGAGACTATAAAGAATTGGATATCGGAGATCAGAAAATTAGCTTATGATGCTGAGGATGTGATTGAAACTTATGCCATCAAAGTTTCATTTTCAGGAGCAATGACTCCTTTCTACAAACTAAGGCATGATCACAAAATTGGAAACAAGATTATATCTATTAATTCTCAAATAGCAGATCTTACAACAAGTTTACAAAAATATGGTTTGACTGCAACAACAAGAGAAAATGAAGAATCACACTTTGTGATTGAGACACAGAGACAGCTGAGATGGTCTTATTCTCATGTGATTGAAGAGGTCACTGTAGGGTTGGATAAGGACATAAAGAAAGTTGTGGAATGGCTACTAAATCAAGATCAACATTGTCAAATGGTTCATATTTGTGGAATGGGCGGTCTAGGTAAAACAACACTTGCTAAAAATGTTTATCATCATAGTTCCAGTAGGCGACACTTTGAGGGTTTTGCTTGGGCTTATATATCTCAAAAATGCAATAGAAGAGAGGTTTGGGAGGGTATCTTACTTCAGCTTACTGCTTCCTCTTCCAAAGAAGAGAGAGATGAGATTAGGAACATGAGAGATGAAGAATTGGCAAAAAAGTTGTACAAAGTTCAACAAGAGAAAATGTGTTTGATCGTCTTGGATGACATATGGAGCAACGAGACTTGGGATATTTTAAGTCCAGCCTTTCCATCAAAAAATACAAAGAGTAAGATGGTTTTTACATCACGAAATAAAGCCGTCTCATCACATGTAGATTCCAAAGGCTTGCTTCACGAACCAGGGTTCTTAAATGCAGAAGATAGTTGGGCGTTGTTTCAGAAGAAAGCTTTTCCAACTAAAGATGATCCGGGTAATATACTTGAATCTTGAAAATATCGTTTTCATTTACGAACGAGAAGTAGTTAGAGAAATTGATGTGTAAGGGTAGGAAAAGTTGTTCTAAGTATACACATTGATTGAGGATAAAAAAACATGAGTGATTAGTTCAATTCCTATTACATGAAATACCTGGTTTTCCTTTCACCAAGTGTTTGTTTGGACTGATTTGTTTTTTCTTATATATTGTGATAAGCACTTGTGAGACTGTTGAGCTTTTGGATACAACTTATAACATGTTCATAGGAAGTTTTCTGGTTATCTCCATAAGCTCCCGCGAATAGCTTATAAATTATGTGAACACGGTTTGAATTTATTTTATTTTTTGTTATAGAAACAAACTATACAGAAGCACTTATATGGTAAGTGTCTGTACTACAAACGCTAAGTTTAGTTTGAAACAAAACAGTTGCAGACTTCTAGCTCATCTCATTTCCTAAAGATTCATGTAATAGCCTTTCCTTCTAGTCATTGAGATATCTTTCTAACTTATTGATTACTAAAGCAACATTCAAAGTTTTGACATGACTTTGATTTGCTCTTGTTGCTTTCTTCATCAATATAACATCTAGATGAGGGGATTCAAAGAAACTAAAATTTTGCTAGAACACTATAAATAATGAGCTTAAAATGGAGTATGTATTAGACTAGCTTGTGTATTTTTATATACCATGTTAATATATATCTCAATCTTTTGCTTAGTTATGAGTTGATTCTCACGAGTTAGAAATTTGACTTGATTTGAAAATTTCACTTGTTGAAGAATTTACTGAGATTTGTAACAGTGTATGACATTAATTTAACAATTTTCTAAAATTTACTTCATTGAAGAATTGACATTAATTCAATTGTGTTGAGCATATGGTTAATGAGTTGTGATACATGTTATGTCAGTAACCATCCATTGAACATAATTAACCACATATTTAAATTGCGTTAACGATCAATATTGTTGTCGAATTTTGATTTCAAATTGTATATCAAAATATCATTTCTCTTAATTTATAAGACTCAATGGAGTCTACACGAGAGTAGACAAGAACAAGAACTTTGAGCTTTTTGTCTCCTTTAGTTTTTACACCCTTACAAACATTCATGTTATATTTTAAATAACAATATTTAAGTTGATGTATTTGCAATACTTTAAACACTTCTCTTGTCTCCTTGACCTGCGTAATATTGGAGGGGTTAAAACTTAGTTTGTTGTTTGCATGTATCTCTAGAAACAGTTCATGTATGCATAATTTTAATTTTTTTTCTTTTCATTTAACTTGAATATTAGCTTGTACCTTTTGCAGAATTCAAAATTTGCAATGAGTTTGAAAGACTAGGCAGAGATATGGTTGCAAAGTGTGCTGGTTTGCCTTTGGCTATCATTGTACTTGGAGGACTTTTGGCTACAAAGGAAACAATCAATGAATGGGAAATGATTCATAAACATATAACCTCTTACCTAATAAGAGGAGATGTACTTGAAAGACAGTCAAGATTAGCTGAGGTGTTGGATTTAAGTTACCACAACATGCCTTATCAACTGAAACCATGTTTTCTTTATTTAAGTCAATTTCCAGAAGACTTTGAGATACCAAAAAGTAAATTAATTCAGTTGTGGATGGCAGAAGGTTTTGTTTCATCTCAATATGAGATTGAAAGGGATGAAAGATTGGAGGATGTCGCTGAGCGTTACCTAGGTAGCTTAATTAGCCGTTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGAAAGATTAAAACTTGTCGGCTGCATGATTTAATGCGTGATATGTGTTTGTCAAAGGCTAGAAAAGAACATTTTCTTAGTTTTATTACCAGATCACAAAAAGATAGTAATAGCATTGATGATGGATCATCATCACCATCATCATCATCTAATCTATTATTAGATTCAAAAAAAACCGGTGGAGTTCGTAGGCTTACTCTTTTCTTGGATAAACATGTTGATAAATTGGTTCCACCCAATGAGCAAGTGAGTCAACATCTTAGATCCCTTGTATATTTCAATGATAAGAAATGTAGAGTTGAAAGTTGGAAGCTACTTAAAGTTGTTTTCGAGAACTTCAAATTACTTAGAGTTCTTGATCTTGAAGGAGTTAAGGGGTCAAAGGGACAATTATTGCCTAAAGAAGTTGGCAATCTGTTTTGGTTGAAGTTTTTGAGTTTGAAAAGGACTTGTATACAAATTCTTCCATCTTCATTAGGCAAATTGGAAAATCTGCAGAGCCTAAATTTGCAAACTATCAATAAAGTAAGTTGGGATTCAACAGTAGAAATTCCAAACATAATATGGAAGTTAAAACGGTTGAGACATTTATATCTTCCCAATTGGTGTGGAAATGTTCATGGCATCCTGCAACTTGAAAATCTAATCAACTTACAGACACTAGTAAATTTTCCAGCCAGTAAATGCGACGTGAGTGATTTGTTAAAACTGAAAAAGCTCAGAAAATTGGTACTGAATGATCCAAGGTATTTCCAAAAGTTTTCCTAAAGTTTCACTCTTTGTAATCAAAAGTTGGAATGTCTGGAATCATTGTCCTTAAAAACTGATTTGCTTTCATTCCCTGATCAAGTAGTGGATGTTGAAAAATTAGTTCTAGGTTGTCCTTCACTTCACAAACTCCATGTAGAGGGGAGAATGGAAAGGCTTCCAGAAGCTCAACTATTTCCGCCACAACTTTCAAAGTTAACTTTGTGGGGTTGTAAACTTGTGGAAGATCCAATGGTAACATTAGAGAAGCTTCCTAATTTGAGGTACCTAAGTGGTTGGGAAATGTATGTTGGAAGGAAATTGGTATGCTCAATAAATGGTTTTCCGAAACTGGAAGTTCTAGCTATCCGTGGCTTTTCTAATTTAGAAGAGTGGGTCGTAGAGAATCAAGCCATGCCTCATCTTTGTAGATTGAGCATATCTGATTGCAACAAGTTAAAGAGTGTTCCTGATGGACTAACATTTGTTGCTGGTCTAAGGGAGTTGGAGATCAGATGGATGCCTAAATCATTCAAGATTAAACTTGGAATTGATGGAGAGGATTATCACAAAGTCCAACATGTTCCATCCATTGTATTTTTCAACTAA

Protein sequence

>MS.gene48526.t1

MLMVESVVSFTIERLADLLIEEANLLSGVSDQIKKLQTELKRMQCFLRDAERKQDEGGETIKNWISEIRKLAYDAEDVIETYAIKVSFSGAMTPFYKLRHDHKIGNKIISINSQIADLTTSLQKYGLTATTRENEESHFVIETQRQLRWSYSHVIEEVTVGLDKDIKKVVEWLLNQDQHCQMVHICGMGGLGKTTLAKNVYHHSSSRRHFEGFAWAYISQKCNRREVWEGILLQLTASSSKEERDEIRNMRDEELAKKLYKVQQEKMCLIVLDDIWSNETWDILSPAFPSKNTKSKMVFTSRNKAVSSHVDSKGLLHEPGFLNAEDSWALFQKKAFPTKDDPEFKICNEFERLGRDMVAKCAGLPLAIIVLGGLLATKETINEWEMIHKHITSYLIRGDVLERQSRLAEVLDLSYHNMPYQLKPCFLYLSQFPEDFEIPKSKLIQLWMAEGFVSSQYEIERDERLEDVAERYLGSLISRCMVQVGQMGSTGKIKTCRLHDLMRDMCLSKARKEHFLSFITRSQKDSNSIDDGSSSPSSSSNLLLDSKKTGGVRRLTLFLDKHVDKLVPPNEQVSQHLRSLVYFNDKKCRVESWKLLKVVFENFKLLRVLDLEGVKGSKGQLLPKEVGNLFWLKFLSLKRTCIQILPSSLGKLENLQSLNLQTINKVSWDSTVEIPNIIWKLKRLRHLYLPNWCGNVHGILQLENLINLQTLVNFPASKCDVSDLLKLKKLRKLLECLESLSLKTDLLSFPDQVVDVEKLVLGCPSLHKLHVEGRMERLPEAQLFPPQLSKLTLWGCKLVEDPMVTLEKLPNLRYLSGWEMYVGRKLVCSINGFPKLEVLAIRGFSNLEEWVVENQAMPHLCRLSISDCNKLKSVPDGLTFVAGLRELEIRWMPKSFKIKLGIDGEDYHKVQHVPSIVFFN