Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49354.t1 | AES60790.2 | 98.1 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 8.30E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49354.t1 | A0A072VL99 | 98.1 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 6.0e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene49354 | 0.830063 | 3.63E-55 | -1.69E-46 |
| MS.gene049343 | MS.gene49354 | 0.831444 | 1.66E-55 | -1.69E-46 |
| MS.gene049419 | MS.gene49354 | -0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene49354 | 0.802203 | 6.27E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene49354 | 0.811096 | 8.30E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene49354 | 0.816469 | 5.44E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene49354 | 0.806707 | 7.22E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene49354 | 0.805125 | 1.55E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene49354 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene49354 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene050826 | MS.gene49354 | 0.819245 | 1.29E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene49354 | 0.815947 | 7.12E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene49354 | 0.824047 | 9.97E-54 | -1.69E-46 |
| MS.gene051332 | MS.gene49354 | 0.810851 | 9.39E-51 | -1.69E-46 |
| MS.gene051924 | MS.gene49354 | -0.824245 | 8.96E-54 | -1.69E-46 |
| MS.gene051926 | MS.gene49354 | -0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene051935 | MS.gene49354 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene49354 | 0.826754 | 2.28E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene49354 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene49354 | 0.838783 | 2.34E-57 | -1.69E-46 |
| MS.gene052519 | MS.gene49354 | 0.85788 | 1.21E-62 | -1.69E-46 |
| MS.gene052586 | MS.gene49354 | 0.800762 | 1.24E-48 | -1.69E-46 |
| MS.gene052675 | MS.gene49354 | 0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene49354 | 0.800661 | 1.30E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene49354 | 0.829881 | 4.02E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene49354 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene49354 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene49354 | 0.817536 | 3.13E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene49354 | 0.827187 | 1.80E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene49354 | 0.806705 | 7.23E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene49354 | 0.81469 | 1.36E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene49354 | 0.853009 | 3.17E-61 | -1.69E-46 |
| MS.gene05423 | MS.gene49354 | 0.810006 | 1.43E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene49354 | -0.842643 | 2.28E-58 | -1.69E-46 |
| MS.gene054405 | MS.gene49354 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene49354 | 0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene49354 | 0.822172 | 2.73E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene49354 | 0.838448 | 2.86E-57 | -1.69E-46 |
| MS.gene054559 | MS.gene49354 | 0.817761 | 2.79E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene49354 | 0.811381 | 7.20E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene49354 | 0.815258 | 1.01E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene49354 | 0.802277 | 6.06E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene49354 | 0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene49354 | 0.813285 | 2.77E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene49354 | 0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene49354 | 0.863146 | 3.07E-64 | -1.69E-46 |
| MS.gene055841 | MS.gene49354 | 0.807259 | 5.52E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene49354 | 0.817008 | 4.12E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene49354 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene49354 | 0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene49354 | 0.831587 | 1.53E-55 | -1.69E-46 |
| MS.gene056272 | MS.gene49354 | 0.804283 | 2.33E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene49354 | 0.818479 | 1.92E-52 | -1.69E-46 |
| MS.gene056373 | MS.gene49354 | 0.807843 | 4.15E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene49354 | 0.816107 | 6.56E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene49354 | 0.803236 | 3.84E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene49354 | 0.814145 | 1.79E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene49354 | 0.828697 | 7.78E-55 | -1.69E-46 |
| MS.gene05690 | MS.gene49354 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene49354 | 0.858113 | 1.03E-62 | -1.69E-46 |
| MS.gene057156 | MS.gene49354 | -0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene49354 | 0.859615 | 3.66E-63 | -1.69E-46 |
| MS.gene057598 | MS.gene49354 | 0.821987 | 3.01E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene49354 | 0.825756 | 3.94E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene49354 | 0.82325 | 1.53E-53 | -1.69E-46 |
| MS.gene059438 | MS.gene49354 | 0.806565 | 7.73E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene49354 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene059440 | MS.gene49354 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene49354 | 0.820412 | 6.96E-53 | -1.69E-46 |
| MS.gene060011 | MS.gene49354 | 0.802277 | 6.05E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene49354 | 0.818317 | 2.09E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene49354 | 0.809791 | 1.59E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene49354 | 0.817807 | 2.72E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene49354 | 0.8323 | 1.02E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene49354 | 0.803013 | 4.27E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene49354 | 0.802399 | 5.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49354.t1 | MTR_1g070900 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 6.60e-150 | 416 |
| MS.gene49354.t1 | MTR_1g070900 | 98.068 | 207 | 4 | 0 | 1 | 207 | 1 | 207 | 9.80e-150 | 416 |
| MS.gene49354.t1 | MTR_1g070900 | 98.421 | 190 | 3 | 0 | 1 | 190 | 1 | 190 | 6.50e-138 | 385 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49354.t1 | AT5G43680 | 39.252 | 214 | 110 | 5 | 1 | 207 | 1 | 201 | 1.40e-39 | 136 |
| MS.gene49354.t1 | AT5G43680 | 39.252 | 214 | 110 | 5 | 1 | 207 | 1 | 201 | 1.40e-39 | 136 |
Find 60 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGATGAACCATTCTTTA+TGG | 0.158677 | 1.1:+53224782 | None:intergenic |
| CATAGTTCAAGAAGCAATTT+TGG | 0.174077 | 1.1:-53223922 | MS.gene49354:CDS |
| ACTTTGCATATTTAATGATT+TGG | 0.278446 | 1.1:+53224842 | None:intergenic |
| TTATTCACCCCAGCATATTC+AGG | 0.302866 | 1.1:+53224993 | None:intergenic |
| TTAGGTTCATAAGGAACTTC+AGG | 0.325877 | 1.1:-53225259 | MS.gene49354:intron |
| AGCAACTGCTTATGCAAGTT+TGG | 0.332765 | 1.1:-53224817 | MS.gene49354:CDS |
| GAGGCCATTCGTCATGAAAT+TGG | 0.333625 | 1.1:-53225219 | MS.gene49354:CDS |
| AGCTAGCCTCCCTGCTGTTC+TGG | 0.335117 | 1.1:+53225787 | None:intergenic |
| TGGAGAAATATTTCTGTTGC+TGG | 0.344609 | 1.1:-53225947 | MS.gene49354:CDS |
| GGAGCTACTGCTGCTGTGAT+TGG | 0.363534 | 1.1:-53225925 | MS.gene49354:intron |
| GATATCATTGGCAAATCCTT+TGG | 0.363620 | 1.1:+53225809 | None:intergenic |
| CCAGTTTCTGCTGAAAATAC+TGG | 0.392588 | 1.1:-53224708 | MS.gene49354:CDS |
| AGCAGGGAGGCTAGCTGGAC+GGG | 0.426637 | 1.1:-53225780 | MS.gene49354:CDS |
| GATGAACCATTCTTTATGGC+AGG | 0.436847 | 1.1:+53224786 | None:intergenic |
| AGGCTAGCTGGACGGGCAGT+TGG | 0.440898 | 1.1:-53225773 | MS.gene49354:CDS |
| TTATCATGCCTCCGAGTTGA+TGG | 0.457366 | 1.1:+53225171 | None:intergenic |
| GGCAGTTGGATATGTACAAT+TGG | 0.468263 | 1.1:-53225759 | MS.gene49354:CDS |
| AGAACAGCAGGGAGGCTAGC+TGG | 0.471150 | 1.1:-53225785 | MS.gene49354:CDS |
| TGCATATTTAATGATTTGGA+TGG | 0.478378 | 1.1:+53224846 | None:intergenic |
| CCTGCTGTTCTGGATATCAT+TGG | 0.485428 | 1.1:+53225797 | None:intergenic |
| AGCATATCATTCATAAATCC+TGG | 0.488462 | 1.1:-53225195 | MS.gene49354:CDS |
| GAAGTTGAGGATGTTAAAGT+TGG | 0.493213 | 1.1:-53224750 | MS.gene49354:CDS |
| GGAGAAATATTTCTGTTGCT+GGG | 0.498165 | 1.1:-53225946 | MS.gene49354:CDS |
| CCAATGATATCCAGAACAGC+AGG | 0.503283 | 1.1:-53225797 | MS.gene49354:CDS |
| TGCTTATGCAAGTTTGGCAC+AGG | 0.516642 | 1.1:-53224811 | MS.gene49354:CDS |
| GACAGAAAACCTGAATATGC+TGG | 0.517261 | 1.1:-53225002 | MS.gene49354:CDS |
| GGCAAATAGCACTGAAGTTG+AGG | 0.519368 | 1.1:-53224763 | MS.gene49354:CDS |
| CTGGACTCTTACCAAATCGC+GGG | 0.532450 | 1.1:-53224689 | MS.gene49354:CDS |
| CAAGAACACTGAACAATGCT+GGG | 0.533552 | 1.1:-53225979 | None:intergenic |
| TGCCTCCGAGTTGATGGGCC+AGG | 0.534429 | 1.1:+53225177 | None:intergenic |
| CTCAATATCCTCTCATACCA+AGG | 0.536160 | 1.1:-53224970 | MS.gene49354:intron |
| ATGAACCATTCTTTATGGCA+GGG | 0.539656 | 1.1:+53224787 | None:intergenic |
| CAGGCCCCTGCCATAAAGAA+TGG | 0.540758 | 1.1:-53224792 | MS.gene49354:CDS |
| ACAGAAAACCTGAATATGCT+GGG | 0.542451 | 1.1:-53225001 | MS.gene49354:CDS |
| TGAACCATTCTTTATGGCAG+GGG | 0.543010 | 1.1:+53224788 | None:intergenic |
| CAGCAGGGAGGCTAGCTGGA+CGG | 0.554377 | 1.1:-53225781 | MS.gene49354:CDS |
| TATCATGCCTCCGAGTTGAT+GGG | 0.558095 | 1.1:+53225172 | None:intergenic |
| GTATTAGGAGCTGATTTGAA+AGG | 0.559557 | 1.1:-53223951 | MS.gene49354:intron |
| GGAAACAATGGCACAGCTAG+AGG | 0.560838 | 1.1:-53225238 | MS.gene49354:CDS |
| GCTTCCAATTTCATGACGAA+TGG | 0.565267 | 1.1:+53225215 | None:intergenic |
| TGCCATAAAGAATGGTTCAT+CGG | 0.576466 | 1.1:-53224784 | MS.gene49354:CDS |
| TAACAGAATCAAACTGTCCA+CGG | 0.582925 | 1.1:+53225735 | None:intergenic |
| GACCAGGCATCTATCTCAGA+TGG | 0.583124 | 1.1:-53225144 | MS.gene49354:intron |
| TGAATGTGCAATAGGTCCAA+AGG | 0.583719 | 1.1:-53225825 | MS.gene49354:intron |
| TACCATCTGAGATAGATGCC+TGG | 0.593353 | 1.1:+53225142 | None:intergenic |
| TAAATCCTGGCCCATCAACT+CGG | 0.600125 | 1.1:-53225182 | MS.gene49354:CDS |
| TCAATAAACCTTGGTATGAG+AGG | 0.600322 | 1.1:+53224962 | None:intergenic |
| CTTCAGGACAGAAAATCTCA+AGG | 0.613401 | 1.1:-53223663 | MS.gene49354:intron |
| AACAGAATCAAACTGTCCAC+GGG | 0.614960 | 1.1:+53225736 | None:intergenic |
| TAAGGAACTTCAGGAAACAA+TGG | 0.628004 | 1.1:-53225250 | MS.gene49354:CDS |
| ACTGGACTCTTACCAAATCG+CGG | 0.630502 | 1.1:-53224690 | MS.gene49354:CDS |
| GCAGCGATCTCAAGTTAACC+AGG | 0.643061 | 1.1:-53225711 | MS.gene49354:intron |
| GAGGCATGATAATCTTGACC+AGG | 0.644493 | 1.1:-53225160 | MS.gene49354:CDS |
| TGGACTCTTACCAAATCGCG+GGG | 0.678679 | 1.1:-53224688 | MS.gene49354:CDS |
| CAATGATATCCAGAACAGCA+GGG | 0.689974 | 1.1:-53225796 | MS.gene49354:CDS |
| CAGAAAACCTGAATATGCTG+GGG | 0.698864 | 1.1:-53225000 | MS.gene49354:CDS |
| ATCCTGGCCCATCAACTCGG+AGG | 0.708372 | 1.1:-53225179 | MS.gene49354:CDS |
| GGATATGTACAATTGGCCCG+TGG | 0.725712 | 1.1:-53225752 | MS.gene49354:CDS |
| TGATATCCAGAACAGCAGGG+AGG | 0.762499 | 1.1:-53225793 | MS.gene49354:CDS |
| GGACTCTTACCAAATCGCGG+GGG | 0.774422 | 1.1:-53224687 | MS.gene49354:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAAAAAAAA+TGG | + | chr1.1:53224250-53224269 | None:intergenic | 0.0% |
| !!! | AAAAAAGATTATGATTTTTT+TGG | - | chr1.1:53224093-53224112 | MS.gene49354:intron | 10.0% |
| !!! | TTTTTTTAAAAAAAAATGGA+AGG | + | chr1.1:53224246-53224265 | None:intergenic | 10.0% |
| !! | ACTAATAAATAATGAAAAGA+AGG | + | chr1.1:53225470-53225489 | None:intergenic | 15.0% |
| !! | AGTCATTAACAATTAATATT+AGG | + | chr1.1:53223952-53223971 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGTAAATGCA+TGG | - | chr1.1:53225477-53225496 | MS.gene49354:intron | 15.0% |
| !!! | AAACAATTTTTATAATCTTC+TGG | + | chr1.1:53225421-53225440 | None:intergenic | 15.0% |
| !!! | ACTATATTTTGTTATTCAAA+AGG | - | chr1.1:53225322-53225341 | MS.gene49354:intron | 15.0% |
| !!! | GAAAAATTAAGGTATTATTT+AGG | + | chr1.1:53225736-53225755 | None:intergenic | 15.0% |
| !!! | TTTAAAATGAATTTTTTCCA+TGG | + | chr1.1:53224021-53224040 | None:intergenic | 15.0% |
| !! | AAAATCAAATATGAGTGATA+GGG | - | chr1.1:53225706-53225725 | MS.gene49354:intron | 20.0% |
| !! | ACTTTGCATATTTAATGATT+TGG | + | chr1.1:53224721-53224740 | None:intergenic | 20.0% |
| !! | CTGTAATCTAAATTATTGAT+GGG | - | chr1.1:53225540-53225559 | MS.gene49354:intron | 20.0% |
| !! | GTACATACTATAAAATTATC+AGG | + | chr1.1:53224634-53224653 | None:intergenic | 20.0% |
| !! | TTTCTTCATTTAGAAATTTC+AGG | + | chr1.1:53224051-53224070 | None:intergenic | 20.0% |
| !!! | ACGTGTATATATTTATTTCT+AGG | - | chr1.1:53224677-53224696 | MS.gene49354:intron | 20.0% |
| !!! | CAAGTAAGATTTTAAAAGTT+AGG | - | chr1.1:53224171-53224190 | MS.gene49354:intron | 20.0% |
| !!! | TATCACTCATATTTGATTTT+GGG | + | chr1.1:53225706-53225725 | None:intergenic | 20.0% |
| !!! | TTATGATTTTTTTGGCATTT+TGG | - | chr1.1:53224101-53224120 | MS.gene49354:intron | 20.0% |
| ! | AAATTGGCAAAATATAACCA+TGG | - | chr1.1:53224001-53224020 | MS.gene49354:intron | 25.0% |
| ! | AACATGGTTATACAAAATCT+CGG | + | chr1.1:53224513-53224532 | None:intergenic | 25.0% |
| ! | ACCTAAAATACAACATATGT+TGG | + | chr1.1:53224287-53224306 | None:intergenic | 25.0% |
| ! | ATGACTTAATGTGTTACATT+TGG | - | chr1.1:53223966-53223985 | MS.gene49354:intron | 25.0% |
| ! | CAAAATCAAATATGAGTGAT+AGG | - | chr1.1:53225705-53225724 | MS.gene49354:intron | 25.0% |
| ! | CAATAATTTAGATTACAGCT+AGG | + | chr1.1:53225538-53225557 | None:intergenic | 25.0% |
| ! | GATATCAGACAATCATATTA+AGG | + | chr1.1:53224930-53224949 | None:intergenic | 25.0% |
| ! | GCTAACATCTAGAAAAATTA+AGG | + | chr1.1:53225747-53225766 | None:intergenic | 25.0% |
| ! | GCTGTAATCTAAATTATTGA+TGG | - | chr1.1:53225539-53225558 | MS.gene49354:intron | 25.0% |
| ! | TCTTACTTCTGTTTATCATA+AGG | - | chr1.1:53223672-53223691 | MS.gene49354:intron | 25.0% |
| ! | TGCAACAATAAACAATAACA+TGG | + | chr1.1:53224529-53224548 | None:intergenic | 25.0% |
| ! | TTCGTTCATTGTTTATACTT+TGG | - | chr1.1:53225372-53225391 | MS.gene49354:intron | 25.0% |
| ! | TTGGTTTCTTGCTAAAAAAT+TGG | - | chr1.1:53223985-53224004 | MS.gene49354:intron | 25.0% |
| !! | AATGCTTTAAATTGCTTATC+CGG | - | chr1.1:53223708-53223727 | MS.gene49354:intron | 25.0% |
| !! | ACCAACATATGTTGTATTTT+AGG | - | chr1.1:53224283-53224302 | MS.gene49354:intron | 25.0% |
| !! | TAAAATTATCAGGTTGTATC+TGG | + | chr1.1:53224624-53224643 | None:intergenic | 25.0% |
| !! | TGCATATTTAATGATTTGGA+TGG | + | chr1.1:53224717-53224736 | None:intergenic | 25.0% |
| !!! | AATAATTTTTGCTGTGTAGT+TGG | - | chr1.1:53224900-53224919 | MS.gene49354:intron | 25.0% |
| !!! | ATATTTTAGCTTGAAGGTAT+TGG | - | chr1.1:53225800-53225819 | MS.gene49354:CDS | 25.0% |
| !!! | ATCACTCATATTTGATTTTG+GGG | + | chr1.1:53225705-53225724 | None:intergenic | 25.0% |
| !!! | ATTATAAGTTGATCGTAGAA+AGG | + | chr1.1:53223882-53223901 | None:intergenic | 25.0% |
| !!! | ATTTTGTTATTCAAAAGGTC+CGG | - | chr1.1:53225327-53225346 | MS.gene49354:intron | 25.0% |
| !!! | CTATCACTCATATTTGATTT+TGG | + | chr1.1:53225707-53225726 | None:intergenic | 25.0% |
| !!! | TAGTGTATATTTTAGCTTGA+AGG | - | chr1.1:53225794-53225813 | MS.gene49354:CDS | 25.0% |
| !!! | TGTTGTATTTTAGGTTCATA+AGG | - | chr1.1:53224292-53224311 | MS.gene49354:intron | 25.0% |
| !!! | TTATAAGTTGATCGTAGAAA+GGG | + | chr1.1:53223881-53223900 | None:intergenic | 25.0% |
| AGCATATCATTCATAAATCC+TGG | - | chr1.1:53224365-53224384 | MS.gene49354:intron | 30.0% | |
| CAAAATCTCGGTAATTGTAT+CGG | + | chr1.1:53224501-53224520 | None:intergenic | 30.0% | |
| CGATCAACTTATAATTCACA+TGG | - | chr1.1:53223887-53223906 | MS.gene49354:intron | 30.0% | |
| GTTGAGAAAAAATCTATCAC+AGG | + | chr1.1:53225025-53225044 | None:intergenic | 30.0% | |
| TTAGGAACATCATAACATCA+AGG | - | chr1.1:53224189-53224208 | MS.gene49354:intron | 30.0% | |
| TTCAATACATGCATATGTAC+AGG | - | chr1.1:53225110-53225129 | MS.gene49354:intron | 30.0% | |
| TTTATAGTATGTACTGCTCT+AGG | - | chr1.1:53224640-53224659 | MS.gene49354:intron | 30.0% | |
| ! | AAACAAGCTTTGGTTGTATT+AGG | - | chr1.1:53225594-53225613 | MS.gene49354:intron | 30.0% |
| ! | ATCGCTACGTATATCATTTT+TGG | + | chr1.1:53225964-53225983 | None:intergenic | 30.0% |
| ! | ATCTGATTTGAAACAAGCTT+TGG | - | chr1.1:53225584-53225603 | MS.gene49354:intron | 30.0% |
| ! | CATAGTTCAAGAAGCAATTT+TGG | - | chr1.1:53225638-53225657 | MS.gene49354:intron | 30.0% |
| ! | TCACATGGATTTGTTTCATT+AGG | - | chr1.1:53223902-53223921 | MS.gene49354:intron | 30.0% |
| ! | TGTTTATACTTTGGCTCATT+TGG | - | chr1.1:53225381-53225400 | MS.gene49354:intron | 30.0% |
| !! | GAATGCTTGTGTTTTTAACT+AGG | - | chr1.1:53225919-53225938 | MS.gene49354:intron | 30.0% |
| AAAGTGAATCGCATGTAGTT+GGG | + | chr1.1:53224130-53224149 | None:intergenic | 35.0% | |
| AAGAAAGCCATAAACATCAC+AGG | + | chr1.1:53225083-53225102 | None:intergenic | 35.0% | |
| ACAGAAAACCTGAATATGCT+GGG | - | chr1.1:53224559-53224578 | MS.gene49354:intron | 35.0% | |
| ATGAACCATTCTTTATGGCA+GGG | + | chr1.1:53224776-53224795 | None:intergenic | 35.0% | |
| CAAGCAAAAACCTTAACTTC+CGG | + | chr1.1:53225349-53225368 | None:intergenic | 35.0% | |
| GAAGTTGAGGATGTTAAAGT+TGG | - | chr1.1:53224810-53224829 | MS.gene49354:CDS | 35.0% | |
| GATATCATTGGCAAATCCTT+TGG | + | chr1.1:53223754-53223773 | None:intergenic | 35.0% | |
| TAACAGAATCAAACTGTCCA+CGG | + | chr1.1:53223828-53223847 | None:intergenic | 35.0% | |
| TAAGGAACTTCAGGAAACAA+TGG | - | chr1.1:53224310-53224329 | MS.gene49354:intron | 35.0% | |
| TCAATAAACCTTGGTATGAG+AGG | + | chr1.1:53224601-53224620 | None:intergenic | 35.0% | |
| TGCCATAAAGAATGGTTCAT+CGG | - | chr1.1:53224776-53224795 | MS.gene49354:CDS | 35.0% | |
| TGTATCTGGTCAATAAACCT+TGG | + | chr1.1:53224610-53224629 | None:intergenic | 35.0% | |
| TTAGGTTCATAAGGAACTTC+AGG | - | chr1.1:53224301-53224320 | MS.gene49354:intron | 35.0% | |
| TTGTGATCCTGTGATGTTTA+TGG | - | chr1.1:53225073-53225092 | MS.gene49354:intron | 35.0% | |
| ! | AGTTCAAGAAGCAATTTTGG+AGG | - | chr1.1:53225641-53225660 | MS.gene49354:intron | 35.0% |
| ! | CCTATTGCACATTCATTTTC+CGG | + | chr1.1:53223730-53223749 | None:intergenic | 35.0% |
| ! | GGAGAAATATTTCTGTTGCT+GGG | - | chr1.1:53223614-53223633 | MS.gene49354:CDS | 35.0% |
| ! | TGGAGAAATATTTCTGTTGC+TGG | - | chr1.1:53223613-53223632 | MS.gene49354:CDS | 35.0% |
| !! | GACTTTACCACGTTTTAGTA+TGG | + | chr1.1:53224224-53224243 | None:intergenic | 35.0% |
| !! | GTATTAGGAGCTGATTTGAA+AGG | - | chr1.1:53225609-53225628 | MS.gene49354:intron | 35.0% |
| AACAGAATCAAACTGTCCAC+GGG | + | chr1.1:53223827-53223846 | None:intergenic | 40.0% | |
| AGAGGTAGCTCATAATGCAA+AGG | - | chr1.1:53225665-53225684 | MS.gene49354:intron | 40.0% | |
| AGCAACTGCTTATGCAAGTT+TGG | - | chr1.1:53224743-53224762 | MS.gene49354:CDS | 40.0% | |
| CAAAGTGAATCGCATGTAGT+TGG | + | chr1.1:53224131-53224150 | None:intergenic | 40.0% | |
| CAATGATATCCAGAACAGCA+GGG | - | chr1.1:53223764-53223783 | MS.gene49354:intron | 40.0% | |
| CAGAAAACCTGAATATGCTG+GGG | - | chr1.1:53224560-53224579 | MS.gene49354:intron | 40.0% | |
| CCAGTTTCTGCTGAAAATAC+TGG | - | chr1.1:53224852-53224871 | MS.gene49354:CDS | 40.0% | |
| CCGGAAAATGAATGTGCAAT+AGG | - | chr1.1:53223727-53223746 | MS.gene49354:intron | 40.0% | |
| CTCAATATCCTCTCATACCA+AGG | - | chr1.1:53224590-53224609 | MS.gene49354:intron | 40.0% | |
| CTTCAGGACAGAAAATCTCA+AGG | - | chr1.1:53225897-53225916 | MS.gene49354:intron | 40.0% | |
| GACAGAAAACCTGAATATGC+TGG | - | chr1.1:53224558-53224577 | MS.gene49354:intron | 40.0% | |
| GATGAACCATTCTTTATGGC+AGG | + | chr1.1:53224777-53224796 | None:intergenic | 40.0% | |
| GCTTCCAATTTCATGACGAA+TGG | + | chr1.1:53224348-53224367 | None:intergenic | 40.0% | |
| GGCAGTTGGATATGTACAAT+TGG | - | chr1.1:53223801-53223820 | MS.gene49354:intron | 40.0% | |
| GTTACCAGTTCTTGTTCTTC+AGG | - | chr1.1:53225881-53225900 | MS.gene49354:intron | 40.0% | |
| TGAACCATTCTTTATGGCAG+GGG | + | chr1.1:53224775-53224794 | None:intergenic | 40.0% | |
| TGAATGTGCAATAGGTCCAA+AGG | - | chr1.1:53223735-53223754 | MS.gene49354:intron | 40.0% | |
| TGCCGATGAACCATTCTTTA+TGG | + | chr1.1:53224781-53224800 | None:intergenic | 40.0% | |
| TTATTATTACCCCCGCGATT+TGG | + | chr1.1:53224885-53224904 | None:intergenic | 40.0% | |
| TTATTCACCCCAGCATATTC+AGG | + | chr1.1:53224570-53224589 | None:intergenic | 40.0% | |
| TTCAAAAGGTCCGGAAGTTA+AGG | - | chr1.1:53225336-53225355 | MS.gene49354:intron | 40.0% | |
| ! | CCAGTATTTTCAGCAGAAAC+TGG | + | chr1.1:53224855-53224874 | None:intergenic | 40.0% |
| !! | TACCACGTTTTAGTATGGAC+AGG | + | chr1.1:53224219-53224238 | None:intergenic | 40.0% |
| ACTGGACTCTTACCAAATCG+CGG | - | chr1.1:53224870-53224889 | MS.gene49354:intron | 45.0% | |
| CCAATGATATCCAGAACAGC+AGG | - | chr1.1:53223763-53223782 | MS.gene49354:intron | 45.0% | |
| CTGTCCTGAAGAACAAGAAC+TGG | + | chr1.1:53225888-53225907 | None:intergenic | 45.0% | |
| GAGGCATGATAATCTTGACC+AGG | - | chr1.1:53224400-53224419 | MS.gene49354:intron | 45.0% | |
| GAGGCCATTCGTCATGAAAT+TGG | - | chr1.1:53224341-53224360 | MS.gene49354:intron | 45.0% | |
| TAAATCCTGGCCCATCAACT+CGG | - | chr1.1:53224378-53224397 | MS.gene49354:intron | 45.0% | |
| TGCCTGTCCATACTAAAACG+TGG | - | chr1.1:53224214-53224233 | MS.gene49354:intron | 45.0% | |
| TGCTTATGCAAGTTTGGCAC+AGG | - | chr1.1:53224749-53224768 | MS.gene49354:CDS | 45.0% | |
| ! | CCTGCTGTTCTGGATATCAT+TGG | + | chr1.1:53223766-53223785 | None:intergenic | 45.0% |
| ! | GGCAAATAGCACTGAAGTTG+AGG | - | chr1.1:53224797-53224816 | MS.gene49354:CDS | 45.0% |
| ! | TACCATCTGAGATAGATGCC+TGG | + | chr1.1:53224421-53224440 | None:intergenic | 45.0% |
| ! | TTATCATGCCTCCGAGTTGA+TGG | + | chr1.1:53224392-53224411 | None:intergenic | 45.0% |
| !! | AGAAGCAATTTTGGAGGCAG+AGG | - | chr1.1:53225647-53225666 | MS.gene49354:intron | 45.0% |
| !! | TATCATGCCTCCGAGTTGAT+GGG | + | chr1.1:53224391-53224410 | None:intergenic | 45.0% |
| CTACTGCTGCTGTGATTGGT+TGG | - | chr1.1:53223639-53223658 | MS.gene49354:CDS | 50.0% | |
| CTGGACTCTTACCAAATCGC+GGG | - | chr1.1:53224871-53224890 | MS.gene49354:intron | 50.0% | |
| GACCAGGCATCTATCTCAGA+TGG | - | chr1.1:53224416-53224435 | MS.gene49354:intron | 50.0% | |
| GCAGCGATCTCAAGTTAACC+AGG | - | chr1.1:53223849-53223868 | MS.gene49354:intron | 50.0% | |
| GGAAACAATGGCACAGCTAG+AGG | - | chr1.1:53224322-53224341 | MS.gene49354:intron | 50.0% | |
| GGATATGTACAATTGGCCCG+TGG | - | chr1.1:53223808-53223827 | MS.gene49354:intron | 50.0% | |
| TGATATCCAGAACAGCAGGG+AGG | - | chr1.1:53223767-53223786 | MS.gene49354:intron | 50.0% | |
| TGGACTCTTACCAAATCGCG+GGG | - | chr1.1:53224872-53224891 | MS.gene49354:intron | 50.0% | |
| !! | TCGTAGAAAGGGAGAGTACC+TGG | + | chr1.1:53223870-53223889 | None:intergenic | 50.0% |
| CAGGCCCCTGCCATAAAGAA+TGG | - | chr1.1:53224768-53224787 | MS.gene49354:CDS | 55.0% | |
| GGACTCTTACCAAATCGCGG+GGG | - | chr1.1:53224873-53224892 | MS.gene49354:intron | 55.0% | |
| GGAGCTACTGCTGCTGTGAT+TGG | - | chr1.1:53223635-53223654 | MS.gene49354:CDS | 55.0% | |
| AGAACAGCAGGGAGGCTAGC+TGG | - | chr1.1:53223775-53223794 | MS.gene49354:intron | 60.0% | |
| ATCCTGGCCCATCAACTCGG+AGG | - | chr1.1:53224381-53224400 | MS.gene49354:intron | 60.0% | |
| ! | AGCTAGCCTCCCTGCTGTTC+TGG | + | chr1.1:53223776-53223795 | None:intergenic | 60.0% |
| ! | AGCAGGGAGGCTAGCTGGAC+GGG | - | chr1.1:53223780-53223799 | MS.gene49354:intron | 65.0% |
| ! | AGGCTAGCTGGACGGGCAGT+TGG | - | chr1.1:53223787-53223806 | MS.gene49354:intron | 65.0% |
| ! | CAGCAGGGAGGCTAGCTGGA+CGG | - | chr1.1:53223779-53223798 | MS.gene49354:intron | 65.0% |
| !! | TGCCTCCGAGTTGATGGGCC+AGG | + | chr1.1:53224386-53224405 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53223596 | 53225986 | 53223596 | ID=MS.gene49354 |
| chr1.1 | mRNA | 53223596 | 53225986 | 53223596 | ID=MS.gene49354.t1;Parent=MS.gene49354 |
| chr1.1 | exon | 53225926 | 53225986 | 53225926 | ID=MS.gene49354.t1.exon1;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53225926 | 53225986 | 53225926 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53225712 | 53225833 | 53225712 | ID=MS.gene49354.t1.exon2;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53225712 | 53225833 | 53225712 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53225145 | 53225277 | 53225145 | ID=MS.gene49354.t1.exon3;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53225145 | 53225277 | 53225145 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53224971 | 53225026 | 53224971 | ID=MS.gene49354.t1.exon4;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53224971 | 53225026 | 53224971 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53224688 | 53224883 | 53224688 | ID=MS.gene49354.t1.exon5;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53224688 | 53224883 | 53224688 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53223914 | 53223966 | 53223914 | ID=MS.gene49354.t1.exon6;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53223914 | 53223966 | 53223914 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| chr1.1 | exon | 53223596 | 53223679 | 53223596 | ID=MS.gene49354.t1.exon7;Parent=MS.gene49354.t1 |
| chr1.1 | CDS | 53223596 | 53223679 | 53223596 | ID=cds.MS.gene49354.t1;Parent=MS.gene49354.t1 |
| Gene Sequence |
| Protein sequence |
