Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50141.t1 | XP_003616450.1 | 96.8 | 476 | 15 | 0 | 1 | 476 | 1 | 476 | 1.10E-266 | 928.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50141.t1 | Q7X9A0 | 83.3 | 478 | 75 | 4 | 1 | 475 | 1 | 476 | 2.8e-231 | 802.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50141.t1 | G7KGT1 | 96.8 | 476 | 15 | 0 | 1 | 476 | 1 | 476 | 7.8e-267 | 928.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene50141 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene050122 | MS.gene50141 | 0.814505 | 1.49E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene50141 | 0.866234 | 3.31E-65 | -1.69E-46 |
| MS.gene050406 | MS.gene50141 | 0.807358 | 5.25E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene50141 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene50141 | 0.876372 | 1.47E-68 | -1.69E-46 |
| MS.gene050783 | MS.gene50141 | 0.831892 | 1.29E-55 | -1.69E-46 |
| MS.gene050812 | MS.gene50141 | 0.816282 | 5.99E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene50141 | 0.818817 | 1.61E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene50141 | 0.847561 | 1.07E-59 | -1.69E-46 |
| MS.gene051255 | MS.gene50141 | 0.803788 | 2.95E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene50141 | 0.832021 | 1.20E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene50141 | 0.862419 | 5.14E-64 | -1.69E-46 |
| MS.gene051582 | MS.gene50141 | 0.875522 | 2.88E-68 | -1.69E-46 |
| MS.gene052011 | MS.gene50141 | -0.834724 | 2.54E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene50141 | 0.83303 | 6.74E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene50141 | 0.836586 | 8.58E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene50141 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene50141 | 0.824203 | 9.17E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene50141 | 0.833534 | 5.05E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene50141 | 0.815897 | 7.31E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene50141 | 0.841298 | 5.17E-58 | -1.69E-46 |
| MS.gene053169 | MS.gene50141 | 0.823955 | 1.05E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene50141 | 0.820586 | 6.34E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene50141 | 0.807737 | 4.37E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene50141 | 0.81298 | 3.23E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene50141 | 0.864483 | 1.18E-64 | -1.69E-46 |
| MS.gene054010 | MS.gene50141 | 0.823585 | 1.28E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene50141 | 0.816087 | 6.62E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene50141 | 0.814104 | 1.83E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene50141 | 0.81423 | 1.71E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene50141 | 0.822755 | 2.00E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene50141 | 0.824347 | 8.48E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene50141 | 0.834792 | 2.44E-56 | -1.69E-46 |
| MS.gene054719 | MS.gene50141 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene054918 | MS.gene50141 | 0.822246 | 2.63E-53 | -1.69E-46 |
| MS.gene054920 | MS.gene50141 | 0.828491 | 8.73E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene50141 | 0.885236 | 9.67E-72 | -1.69E-46 |
| MS.gene055277 | MS.gene50141 | 0.818422 | 1.98E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene50141 | 0.875112 | 3.98E-68 | -1.69E-46 |
| MS.gene055390 | MS.gene50141 | 0.803105 | 4.09E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene50141 | 0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene50141 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene50141 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene50141 | 0.849522 | 3.06E-60 | -1.69E-46 |
| MS.gene055564 | MS.gene50141 | 0.832928 | 7.15E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene50141 | 0.858835 | 6.27E-63 | -1.69E-46 |
| MS.gene055741 | MS.gene50141 | 0.808128 | 3.61E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene50141 | 0.815179 | 1.06E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene50141 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene50141 | 0.813129 | 2.99E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene50141 | 0.882913 | 6.99E-71 | -1.69E-46 |
| MS.gene056514 | MS.gene50141 | 0.829629 | 4.63E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene50141 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene50141 | 0.815729 | 7.96E-52 | -1.69E-46 |
| MS.gene056723 | MS.gene50141 | 0.839761 | 1.31E-57 | -1.69E-46 |
| MS.gene056902 | MS.gene50141 | 0.848241 | 6.95E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene50141 | 0.832694 | 8.17E-56 | -1.69E-46 |
| MS.gene057121 | MS.gene50141 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene50141 | 0.842657 | 2.26E-58 | -1.69E-46 |
| MS.gene057396 | MS.gene50141 | 0.834769 | 2.47E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene50141 | 0.806598 | 7.61E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene50141 | 0.822113 | 2.82E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene50141 | 0.825853 | 3.74E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene50141 | 0.823449 | 1.38E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene50141 | 0.836834 | 7.42E-57 | -1.69E-46 |
| MS.gene058007 | MS.gene50141 | 0.807427 | 5.08E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene50141 | 0.806242 | 9.05E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene50141 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene50141 | 0.836534 | 8.85E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene50141 | 0.81963 | 1.05E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene50141 | 0.814629 | 1.40E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene50141 | 0.842305 | 2.80E-58 | -1.69E-46 |
| MS.gene058365 | MS.gene50141 | 0.829425 | 5.18E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene50141 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene50141 | 0.862885 | 3.69E-64 | -1.69E-46 |
| MS.gene05886 | MS.gene50141 | 0.817462 | 3.26E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene50141 | 0.830227 | 3.31E-55 | -1.69E-46 |
| MS.gene058949 | MS.gene50141 | 0.822157 | 2.75E-53 | -1.69E-46 |
| MS.gene059011 | MS.gene50141 | 0.833212 | 6.07E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene50141 | 0.843655 | 1.23E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene50141 | 0.853098 | 2.99E-61 | -1.69E-46 |
| MS.gene059462 | MS.gene50141 | 0.813698 | 2.24E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene50141 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene50141 | 0.822781 | 1.97E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene50141 | 0.860195 | 2.45E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene50141 | 0.855539 | 5.89E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene50141 | 0.86345 | 2.47E-64 | -1.69E-46 |
| MS.gene059876 | MS.gene50141 | 0.808144 | 3.58E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene50141 | 0.805036 | 1.62E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene50141 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene50141 | 0.829352 | 5.40E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene50141 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene50141 | 0.846919 | 1.60E-59 | -1.69E-46 |
| MS.gene061154 | MS.gene50141 | 0.882255 | 1.21E-70 | -1.69E-46 |
| MS.gene061159 | MS.gene50141 | 0.808099 | 3.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50141.t1 | MTR_5g080450 | 96.849 | 476 | 15 | 0 | 1 | 476 | 1 | 476 | 0.0 | 964 |
| MS.gene50141.t1 | MTR_4g021210 | 81.761 | 477 | 84 | 2 | 1 | 475 | 1 | 476 | 0.0 | 822 |
| MS.gene50141.t1 | MTR_3g068030 | 88.330 | 437 | 49 | 2 | 1 | 436 | 1 | 436 | 0.0 | 807 |
| MS.gene50141.t1 | MTR_3g068030 | 89.100 | 422 | 45 | 1 | 16 | 436 | 1 | 422 | 0.0 | 794 |
| MS.gene50141.t1 | MTR_2g105480 | 48.555 | 346 | 164 | 9 | 82 | 419 | 75 | 414 | 1.36e-107 | 326 |
| MS.gene50141.t1 | MTR_2g105480 | 53.169 | 284 | 122 | 7 | 82 | 360 | 75 | 352 | 1.26e-96 | 295 |
| MS.gene50141.t1 | MTR_2g105480 | 56.277 | 231 | 90 | 7 | 82 | 307 | 75 | 299 | 8.76e-78 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50141.t1 | AT2G39730 | 80.042 | 476 | 92 | 2 | 1 | 475 | 1 | 474 | 0.0 | 801 |
| MS.gene50141.t1 | AT2G39730 | 79.279 | 444 | 89 | 2 | 1 | 443 | 1 | 442 | 0.0 | 738 |
| MS.gene50141.t1 | AT2G39730 | 80.000 | 440 | 85 | 2 | 1 | 439 | 1 | 438 | 0.0 | 737 |
| MS.gene50141.t1 | AT1G73110 | 55.932 | 295 | 121 | 7 | 132 | 419 | 39 | 331 | 6.18e-112 | 334 |
| MS.gene50141.t1 | AT1G73110 | 51.488 | 336 | 149 | 9 | 91 | 419 | 100 | 428 | 4.85e-111 | 335 |
Find 110 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTCTAATTCTTGGTATC+TGG | 0.183651 | 5.4:-63108932 | MS.gene50141:CDS |
| TCAATTGGCAGACAAGTATT+TGG | 0.252747 | 5.4:-63107361 | MS.gene50141:CDS |
| CTTCAGGTTCCTCTAATTCT+TGG | 0.267602 | 5.4:-63108939 | MS.gene50141:intron |
| AAATTACATGCCTTGATATT+AGG | 0.286542 | 5.4:+63109217 | None:intergenic |
| GTTCCAAGTTCATCATTCTT+TGG | 0.302573 | 5.4:-63109857 | MS.gene50141:CDS |
| AAAAGTTGGAGGTCCTTCTT+TGG | 0.306483 | 5.4:+63107464 | None:intergenic |
| CCAGATGAAACCTTTGTGTT+TGG | 0.318881 | 5.4:+63109803 | None:intergenic |
| CCAATACGATCTTCTCTTGT+AGG | 0.327862 | 5.4:+63107862 | None:intergenic |
| CCAACAAATGTTCAACTTCC+TGG | 0.344096 | 5.4:-63108000 | MS.gene50141:CDS |
| ATCAAGAGTGGATCTTACTA+TGG | 0.352058 | 5.4:-63107303 | MS.gene50141:intron |
| TCTCCAGCACTCATCATGAT+AGG | 0.354239 | 5.4:+63108225 | None:intergenic |
| TTAGTGTTGCATTTACCATT+TGG | 0.355606 | 5.4:+63108040 | None:intergenic |
| TCCTCTAATTCTTGGTATCT+GGG | 0.357485 | 5.4:-63108931 | MS.gene50141:CDS |
| TTGGAGAAACTGTTGGAGTA+TGG | 0.371448 | 5.4:-63107423 | MS.gene50141:CDS |
| TTTGGATCCGTACAACCTTC+AGG | 0.387004 | 5.4:+63106193 | None:intergenic |
| CAGTTTCTCCAAAGTCATCT+TGG | 0.388317 | 5.4:+63107434 | None:intergenic |
| CCAAACACAAAGGTTTCATC+TGG | 0.389569 | 5.4:-63109803 | MS.gene50141:CDS |
| AGCAAACTGACAAAGATAGA+TGG | 0.392016 | 5.4:-63109742 | MS.gene50141:CDS |
| ATCGTATTGGTGTTTGTAAA+GGG | 0.395706 | 5.4:-63107849 | MS.gene50141:CDS |
| CAAAGATAGATGGGGAGGTT+TGG | 0.396410 | 5.4:-63109732 | MS.gene50141:CDS |
| CCCCAGATACCAAGAATTAG+AGG | 0.399957 | 5.4:+63108930 | None:intergenic |
| CCAGGAAGTTGAACATTTGT+TGG | 0.402105 | 5.4:+63108000 | None:intergenic |
| CGTGTGCCTATCATTGTTAC+TGG | 0.412562 | 5.4:-63107952 | MS.gene50141:CDS |
| CAGATTTCTTTGGTGCACTT+AGG | 0.414256 | 5.4:-63107566 | MS.gene50141:CDS |
| AGATTTCTTTGGTGCACTTA+GGG | 0.414272 | 5.4:-63107565 | MS.gene50141:CDS |
| AGGCAGAGTCAAGAAGTTCT+TGG | 0.414493 | 5.4:+63109237 | None:intergenic |
| TTGATCATCTGAAGTATCAT+AGG | 0.417286 | 5.4:+63109709 | None:intergenic |
| CCATCATCACTTCTAGCAGT+TGG | 0.419425 | 5.4:+63106154 | None:intergenic |
| TGATCAACCCAAGATGACTT+TGG | 0.420505 | 5.4:-63107442 | MS.gene50141:CDS |
| AAATGTGAAGAGAGTTCAAT+TGG | 0.422067 | 5.4:-63107376 | MS.gene50141:CDS |
| TCCGTACAACCTTCAGGAAC+AGG | 0.428174 | 5.4:+63106199 | None:intergenic |
| CAGTTGAGCTTGAATAGCTC+TGG | 0.429062 | 5.4:-63109893 | MS.gene50141:CDS |
| ATACGACCGTCACGAATAAG+AGG | 0.436360 | 5.4:+63107904 | None:intergenic |
| GATCGTATTGGTGTTTGTAA+AGG | 0.436492 | 5.4:-63107850 | MS.gene50141:CDS |
| TGAGCTTGTCTTTGCTAAGA+TGG | 0.442576 | 5.4:-63108877 | MS.gene50141:CDS |
| TCATTACCAGTAACAATGAT+AGG | 0.445482 | 5.4:+63107946 | None:intergenic |
| CTTTGTCGAATTAGTTTCGC+TGG | 0.446692 | 5.4:+63108177 | None:intergenic |
| CAGGAAGTTGAACATTTGTT+GGG | 0.448889 | 5.4:+63108001 | None:intergenic |
| TTCCAGCATCTTGTGGTGCT+TGG | 0.450580 | 5.4:+63109645 | None:intergenic |
| AGTTTCTCCAAAGTCATCTT+GGG | 0.451215 | 5.4:+63107435 | None:intergenic |
| CTTCCAAAGAATGATGAACT+TGG | 0.453642 | 5.4:+63109854 | None:intergenic |
| TCTTATTCGTGACGGTCGTA+TGG | 0.454844 | 5.4:-63107902 | MS.gene50141:CDS |
| AAGATTGTTGACACTTTCCC+CGG | 0.455781 | 5.4:-63107787 | MS.gene50141:CDS |
| CATCATCACTTCTAGCAGTT+GGG | 0.458963 | 5.4:+63106155 | None:intergenic |
| TGATGCAGGAGCCGGTCGTA+TGG | 0.459178 | 5.4:-63108091 | MS.gene50141:CDS |
| GAGCTAGAAAGTGGAAATGC+AGG | 0.469912 | 5.4:-63108204 | MS.gene50141:CDS |
| GAAGTGAGAAAGTGGATTGC+TGG | 0.475410 | 5.4:-63107525 | MS.gene50141:CDS |
| AACGATCTTGATGCAGGAGC+CGG | 0.476723 | 5.4:-63108099 | MS.gene50141:CDS |
| TTCATAAACGATCTTGATGC+AGG | 0.477723 | 5.4:-63108105 | MS.gene50141:CDS |
| CTTGGTATCTGGGGAGGTAA+AGG | 0.479768 | 5.4:-63108921 | MS.gene50141:CDS |
| TTCCAAGCACCACAAGATGC+TGG | 0.484718 | 5.4:-63109647 | MS.gene50141:CDS |
| TCCTGTTCCTGAAGGTTGTA+CGG | 0.488800 | 5.4:-63106200 | MS.gene50141:CDS |
| CTTGACTCTGCCTAATATCA+AGG | 0.490195 | 5.4:-63109227 | MS.gene50141:intron |
| TATTTGGAAGGGGCTGCTCT+TGG | 0.494287 | 5.4:-63107345 | MS.gene50141:CDS |
| AACCTTGACAACACCATGGA+TGG | 0.505223 | 5.4:-63109307 | MS.gene50141:CDS |
| AGCCCTATCATGATGAGTGC+TGG | 0.507079 | 5.4:-63108228 | MS.gene50141:CDS |
| GCAAACTGACAAAGATAGAT+GGG | 0.509312 | 5.4:-63109741 | MS.gene50141:CDS |
| GAACTTACCAATGGATTGAC+CGG | 0.514345 | 5.4:+63107768 | None:intergenic |
| ACTTTCCCCGGTCAATCCAT+TGG | 0.514382 | 5.4:-63107775 | MS.gene50141:intron |
| ATCTTGGGTTGATCAAAAGT+TGG | 0.516048 | 5.4:+63107450 | None:intergenic |
| ATGATGATGAAGTGAGAAAG+TGG | 0.522348 | 5.4:-63107533 | MS.gene50141:CDS |
| TCTTATGAGTACATTAGCAC+TGG | 0.523592 | 5.4:-63109602 | MS.gene50141:CDS |
| GGTGTTGGCATTGAAACCAT+TGG | 0.529872 | 5.4:-63107504 | MS.gene50141:CDS |
| GATGACTTTGGAGAAACTGT+TGG | 0.532144 | 5.4:-63107430 | MS.gene50141:CDS |
| GGCAGACAAGTATTTGGAAG+GGG | 0.535052 | 5.4:-63107355 | MS.gene50141:CDS |
| GATGCAGGAGCCGGTCGTAT+GGG | 0.535411 | 5.4:-63108090 | MS.gene50141:CDS |
| GCAGCAGACATAATACGAAA+AGG | 0.536262 | 5.4:-63108144 | MS.gene50141:CDS |
| TAGCAAAGACAAGCTCAGCT+TGG | 0.537801 | 5.4:+63108883 | None:intergenic |
| CTCCAGCACTCATCATGATA+GGG | 0.540258 | 5.4:+63108226 | None:intergenic |
| GAGCTTGTCTTTGCTAAGAT+GGG | 0.542887 | 5.4:-63108876 | MS.gene50141:CDS |
| AACCATCCATGGTGTTGTCA+AGG | 0.543770 | 5.4:+63109305 | None:intergenic |
| CCAACTGCTAGAAGTGATGA+TGG | 0.547629 | 5.4:-63106154 | MS.gene50141:CDS |
| GTGTTGGCATTGAAACCATT+GGG | 0.550669 | 5.4:-63107503 | MS.gene50141:CDS |
| CCTCTAATTCTTGGTATCTG+GGG | 0.553152 | 5.4:-63108930 | MS.gene50141:CDS |
| TTGGCAGACAAGTATTTGGA+AGG | 0.553516 | 5.4:-63107357 | MS.gene50141:CDS |
| GTAAGTATTCCTGTTCCTGA+AGG | 0.553834 | 5.4:-63106208 | MS.gene50141:CDS |
| ATCTTAATAACATCTTCCTC+AGG | 0.555997 | 5.4:+63107805 | None:intergenic |
| TGTTGTTCCACCCATACGAC+CGG | 0.556920 | 5.4:+63108080 | None:intergenic |
| ATACACTGTGAACAACCAAA+TGG | 0.557588 | 5.4:-63108055 | MS.gene50141:CDS |
| AGCTGAGACTGAGGCAACCA+TGG | 0.564992 | 5.4:+63110554 | None:intergenic |
| CATCACAAGAGGGAAGGGTA+TGG | 0.566153 | 5.4:-63109681 | MS.gene50141:CDS |
| AAGCTTGTGAACTCCAAAGA+AGG | 0.566326 | 5.4:-63107477 | MS.gene50141:CDS |
| CCTACAAGAGAAGATCGTAT+TGG | 0.570203 | 5.4:-63107862 | MS.gene50141:CDS |
| TCTTCTTTGTTATACATACC+AGG | 0.570852 | 5.4:+63107982 | None:intergenic |
| GCAGGAGCCGGTCGTATGGG+TGG | 0.574559 | 5.4:-63108087 | MS.gene50141:CDS |
| ACAAGCTTGTCCATAAAAGC+AGG | 0.575624 | 5.4:+63109271 | None:intergenic |
| AGTGCTGGAGAGCTAGAAAG+TGG | 0.577837 | 5.4:-63108213 | MS.gene50141:CDS |
| AGCTCTAACAGCTGAGACTG+AGG | 0.584438 | 5.4:+63110545 | None:intergenic |
| TACGCTCCTCTTATTCGTGA+CGG | 0.593644 | 5.4:-63107910 | MS.gene50141:CDS |
| CTAATTCTTGGTATCTGGGG+AGG | 0.593707 | 5.4:-63108927 | MS.gene50141:CDS |
| TGGCAGACAAGTATTTGGAA+GGG | 0.594237 | 5.4:-63107356 | MS.gene50141:CDS |
| AGAAAGTGGATTGCTGGTGT+TGG | 0.596527 | 5.4:-63107519 | MS.gene50141:CDS |
| AACTTACCAATGGATTGACC+GGG | 0.600135 | 5.4:+63107769 | None:intergenic |
| ATCTGGGGAGGTAAAGGTCA+AGG | 0.603588 | 5.4:-63108915 | MS.gene50141:CDS |
| TTGGGTTGATCAAAAGTTGG+AGG | 0.603661 | 5.4:+63107453 | None:intergenic |
| ACAAGACATCACAAGAGGGA+AGG | 0.605967 | 5.4:-63109687 | MS.gene50141:CDS |
| AATCAAGATGCTATCAAGAG+TGG | 0.612496 | 5.4:-63107315 | MS.gene50141:CDS |
| CAAGACATCACAAGAGGGAA+GGG | 0.621491 | 5.4:-63109686 | MS.gene50141:CDS |
| CTCGAGGTTTCCAAACACAA+AGG | 0.626514 | 5.4:-63109813 | MS.gene50141:CDS |
| TAATGAGTTCCAGCATCTTG+TGG | 0.630506 | 5.4:+63109638 | None:intergenic |
| GATCAACAAGACATCACAAG+AGG | 0.631005 | 5.4:-63109692 | MS.gene50141:CDS |
| TAGACATGATAATGTACCTG+AGG | 0.644802 | 5.4:-63107821 | MS.gene50141:CDS |
| CTTTGTGTTTGGAAACCTCG+AGG | 0.648452 | 5.4:+63109814 | None:intergenic |
| ACTGACAAAGATAGATGGGG+AGG | 0.671037 | 5.4:-63109737 | MS.gene50141:CDS |
| GCTTAAAGAAAGTTACCTCG+AGG | 0.671149 | 5.4:-63109829 | MS.gene50141:CDS |
| ATCAACAAGACATCACAAGA+GGG | 0.675178 | 5.4:-63109691 | MS.gene50141:CDS |
| TCAGCTGTTAGAGCTGTCAG+TGG | 0.687429 | 5.4:-63110537 | MS.gene50141:CDS |
| CAAACTGACAAAGATAGATG+GGG | 0.706759 | 5.4:-63109740 | MS.gene50141:CDS |
| GTACAACCTTGACAACACCA+TGG | 0.736816 | 5.4:-63109311 | MS.gene50141:CDS |
| ACTTACCAATGGATTGACCG+GGG | 0.739472 | 5.4:+63107770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACATAGTATATTAT+AGG | + | chr5.4:63110109-63110128 | None:intergenic | 10.0% |
| !! | AAAAAACATAGTATATTATA+GGG | + | chr5.4:63110108-63110127 | None:intergenic | 10.0% |
| !! | AGATTGTAATAAAAAAAAAA+AGG | + | chr5.4:63109945-63109964 | None:intergenic | 10.0% |
| !! | TAGAAAATCAAATAAAAAAA+AGG | + | chr5.4:63110431-63110450 | None:intergenic | 10.0% |
| !! | TTATAATATATGTAATAAAC+TGG | + | chr5.4:63109431-63109450 | None:intergenic | 10.0% |
| !! | TTTGTTTATAATAGAAATAA+TGG | - | chr5.4:63109540-63109559 | MS.gene50141:intron | 10.0% |
| !!! | TAATATTTAAAAGTTTTGAT+AGG | + | chr5.4:63109880-63109899 | None:intergenic | 10.0% |
| !!! | TTTTTTTATAAAGACTTTAA+TGG | + | chr5.4:63110133-63110152 | None:intergenic | 10.0% |
| !! | ATAAATATAGTATGATATGA+CGG | - | chr5.4:63106506-63106525 | MS.gene50141:intron | 15.0% |
| !! | ATTTATAAATCAAAATACCA+TGG | + | chr5.4:63106492-63106511 | None:intergenic | 15.0% |
| !!! | AAAACATTTAAAGTATGAAT+AGG | - | chr5.4:63109568-63109587 | MS.gene50141:intron | 15.0% |
| !!! | AATATTTTCATAATTTCTTC+AGG | - | chr5.4:63107726-63107745 | MS.gene50141:intron | 15.0% |
| !!! | CAAATCTTTTTTTTATATGA+AGG | - | chr5.4:63107317-63107336 | MS.gene50141:CDS | 15.0% |
| !! | AAAATAATTGATAAGTAGCT+AGG | + | chr5.4:63106190-63106209 | None:intergenic | 20.0% |
| !! | AACAAAAGTTGTATTCATTA+TGG | + | chr5.4:63109526-63109545 | None:intergenic | 20.0% |
| !! | ATATTATAAAGAGTTTGATG+TGG | + | chr5.4:63110037-63110056 | None:intergenic | 20.0% |
| !! | ATTATTATTCATGTAGATCA+TGG | - | chr5.4:63107507-63107526 | MS.gene50141:CDS | 20.0% |
| !! | CAAATAATGATTCAAATGTT+TGG | - | chr5.4:63106340-63106359 | MS.gene50141:intron | 20.0% |
| !! | CTAATAAAAGGCAAATTATA+GGG | - | chr5.4:63110190-63110209 | MS.gene50141:intron | 20.0% |
| !! | TATTATAAAGAGTTTGATGT+GGG | + | chr5.4:63110036-63110055 | None:intergenic | 20.0% |
| !! | TCTAATAAAAGGCAAATTAT+AGG | - | chr5.4:63110189-63110208 | MS.gene50141:intron | 20.0% |
| !! | TGAAAAATAGACGTAATTAA+AGG | - | chr5.4:63108119-63108138 | MS.gene50141:CDS | 20.0% |
| !!! | ATATTTTTTTTCACCGATAA+AGG | - | chr5.4:63109907-63109926 | MS.gene50141:intron | 20.0% |
| !!! | ATCTTTTTTTTATATGAAGG+TGG | - | chr5.4:63107320-63107339 | MS.gene50141:CDS | 20.0% |
| !!! | ATTTTAATAGTACATAAGAG+TGG | - | chr5.4:63106571-63106590 | MS.gene50141:intron | 20.0% |
| !!! | CATCAAAATTTTTTATACTG+AGG | - | chr5.4:63107614-63107633 | MS.gene50141:intron | 20.0% |
| !!! | GAACTGAAAACAATTTTATA+AGG | - | chr5.4:63110226-63110245 | MS.gene50141:intron | 20.0% |
| !!! | TATTTTTTTTCACCGATAAA+GGG | - | chr5.4:63109908-63109927 | MS.gene50141:intron | 20.0% |
| !!! | TTTTATTTGATTTTCTATGC+AGG | - | chr5.4:63110434-63110453 | MS.gene50141:intron | 20.0% |
| !!! | TTTTGCTTCTTTCTAATAAA+AGG | - | chr5.4:63110178-63110197 | MS.gene50141:intron | 20.0% |
| !!! | TTTTTGGAACAATTAATTGA+TGG | - | chr5.4:63107867-63107886 | MS.gene50141:CDS | 20.0% |
| !!! | TTTTTTTTTGCAGATTTCTT+TGG | - | chr5.4:63109105-63109124 | MS.gene50141:intron | 20.0% |
| ! | AAAATCATAGCTTCAAATCA+AGG | - | chr5.4:63107923-63107942 | MS.gene50141:CDS | 25.0% |
| ! | AAATTACATGCCTTGATATT+AGG | + | chr5.4:63107467-63107486 | None:intergenic | 25.0% |
| ! | AATGATTTACTTATCCTTGA+AGG | + | chr5.4:63109612-63109631 | None:intergenic | 25.0% |
| ! | ATAGCATTTGAGTAAACTTT+CGG | - | chr5.4:63106545-63106564 | MS.gene50141:intron | 25.0% |
| ! | ATGAGAATCTATCTATATTC+AGG | + | chr5.4:63109830-63109849 | None:intergenic | 25.0% |
| ! | ATTAATACATCATCATCAGA+TGG | + | chr5.4:63108386-63108405 | None:intergenic | 25.0% |
| ! | CATGCAAATTATTCATTTGT+AGG | + | chr5.4:63109073-63109092 | None:intergenic | 25.0% |
| ! | GGTGTATTTGATTCAAAATT+TGG | - | chr5.4:63108974-63108993 | MS.gene50141:intron | 25.0% |
| ! | TGTTGTGAACATTTATATTG+CGG | - | chr5.4:63107564-63107583 | MS.gene50141:CDS | 25.0% |
| ! | TTCAAGGATAAGTAAATCAT+TGG | - | chr5.4:63109611-63109630 | MS.gene50141:CDS | 25.0% |
| !! | AAGTTTTACAAACAATTGGA+AGG | - | chr5.4:63109636-63109655 | MS.gene50141:CDS | 25.0% |
| !! | CCAAAAAAGAGTTTCAATTT+TGG | + | chr5.4:63107854-63107873 | None:intergenic | 25.0% |
| !! | CTCAAAAAAGTATGTATGAT+TGG | - | chr5.4:63110381-63110400 | MS.gene50141:intron | 25.0% |
| !! | GGTAAAGTTTTACAAACAAT+TGG | - | chr5.4:63109632-63109651 | MS.gene50141:CDS | 25.0% |
| !! | TAAAATTGTTTTCAGTTCCT+TGG | + | chr5.4:63110224-63110243 | None:intergenic | 25.0% |
| !! | TCGTATGGAGAAATTTTATT+GGG | - | chr5.4:63108794-63108813 | MS.gene50141:intron | 25.0% |
| !!! | AAGAGTTTCAATTTTGGAAA+TGG | + | chr5.4:63107848-63107867 | None:intergenic | 25.0% |
| !!! | ACCTTTTTAATTACTCCATT+CGG | - | chr5.4:63108953-63108972 | MS.gene50141:intron | 25.0% |
| !!! | CCAAAATTGAAACTCTTTTT+TGG | - | chr5.4:63107851-63107870 | MS.gene50141:CDS | 25.0% |
| !!! | GTATGAATAGGTATTGATTT+AGG | - | chr5.4:63109580-63109599 | MS.gene50141:intron | 25.0% |
| !!! | GTATTTTTTTTCCTCCATTT+TGG | + | chr5.4:63110295-63110314 | None:intergenic | 25.0% |
| !!! | TAGATCATGGTTTTAAATTG+TGG | - | chr5.4:63107520-63107539 | MS.gene50141:CDS | 25.0% |
| !!! | TTGAAGCTATGATTTTTTCT+AGG | + | chr5.4:63107919-63107938 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATATGAAGGTGG+TGG | - | chr5.4:63107323-63107342 | MS.gene50141:CDS | 25.0% |
| AAAGAAGCAAAAGATATTGC+AGG | + | chr5.4:63110170-63110189 | None:intergenic | 30.0% | |
| AAATGTGAAGAGAGTTCAAT+TGG | - | chr5.4:63109305-63109324 | MS.gene50141:CDS | 30.0% | |
| ACCGAATGGAGTAATTAAAA+AGG | + | chr5.4:63108957-63108976 | None:intergenic | 30.0% | |
| ATCTTAATAACATCTTCCTC+AGG | + | chr5.4:63108879-63108898 | None:intergenic | 30.0% | |
| GAATCAATCATAGACCAAAA+TGG | - | chr5.4:63110278-63110297 | MS.gene50141:intron | 30.0% | |
| TAAATCAAAATACCATGGAC+TGG | + | chr5.4:63106487-63106506 | None:intergenic | 30.0% | |
| TATTATCCTATGAGACACAT+CGG | + | chr5.4:63106757-63106776 | None:intergenic | 30.0% | |
| TCATTACCAGTAACAATGAT+AGG | + | chr5.4:63108738-63108757 | None:intergenic | 30.0% | |
| TTAAAGGTAACCTCATATGT+CGG | - | chr5.4:63108135-63108154 | MS.gene50141:CDS | 30.0% | |
| TTAGTGTTGCATTTACCATT+TGG | + | chr5.4:63108644-63108663 | None:intergenic | 30.0% | |
| TTTGAATCAAATACACCGAA+TGG | + | chr5.4:63108971-63108990 | None:intergenic | 30.0% | |
| ! | AAATGTTTGGAATCTGGATT+TGG | - | chr5.4:63106353-63106372 | MS.gene50141:intron | 30.0% |
| ! | ATCGTATTGGTGTTTGTAAA+GGG | - | chr5.4:63108832-63108851 | MS.gene50141:intron | 30.0% |
| ! | CAGTTGACTTAATTGGTATT+GGG | - | chr5.4:63106438-63106457 | MS.gene50141:intron | 30.0% |
| ! | CTAAAGTATCAGTTCTACTT+AGG | + | chr5.4:63106603-63106622 | None:intergenic | 30.0% |
| ! | CTATTTTATTCGAGTCTTAG+TGG | + | chr5.4:63107695-63107714 | None:intergenic | 30.0% |
| ! | GTCGTATGGAGAAATTTTAT+TGG | - | chr5.4:63108793-63108812 | MS.gene50141:intron | 30.0% |
| ! | TACATCTCAGTTGACTTAAT+TGG | - | chr5.4:63106431-63106450 | MS.gene50141:intron | 30.0% |
| ! | TCAGTTGACTTAATTGGTAT+TGG | - | chr5.4:63106437-63106456 | MS.gene50141:intron | 30.0% |
| ! | TCTTCACATTTTCTTGTTCT+TGG | + | chr5.4:63109296-63109315 | None:intergenic | 30.0% |
| ! | TCTTCTTTGTTATACATACC+AGG | + | chr5.4:63108702-63108721 | None:intergenic | 30.0% |
| ! | TGATTCAAATGTTTGGAATC+TGG | - | chr5.4:63106347-63106366 | MS.gene50141:intron | 30.0% |
| ! | TTGATCATCTGAAGTATCAT+AGG | + | chr5.4:63106975-63106994 | None:intergenic | 30.0% |
| !! | CAAATCAAGGTTTTGTAAAG+CGG | - | chr5.4:63107936-63107955 | MS.gene50141:CDS | 30.0% |
| !! | TCCTAAGTTCAATTTTGATG+CGG | + | chr5.4:63110063-63110082 | None:intergenic | 30.0% |
| !! | TTTGATTTTCTATGCAGGTA+AGG | - | chr5.4:63110439-63110458 | MS.gene50141:intron | 30.0% |
| !!! | AACAGAATGAGTAGGTTTTT+TGG | - | chr5.4:63109034-63109053 | MS.gene50141:intron | 30.0% |
| !!! | AGGTTTTTTGGTTAAGTGTT+TGG | - | chr5.4:63109046-63109065 | MS.gene50141:intron | 30.0% |
| AAAGGCAAATTATAGGGACT+AGG | - | chr5.4:63110196-63110215 | MS.gene50141:intron | 35.0% | |
| AATCAAGATGCTATCAAGAG+TGG | - | chr5.4:63109366-63109385 | MS.gene50141:intron | 35.0% | |
| ACCATGTATGATGGTATTTC+AGG | - | chr5.4:63107348-63107367 | MS.gene50141:CDS | 35.0% | |
| ACCGCATCAAAATTGAACTT+AGG | - | chr5.4:63110059-63110078 | MS.gene50141:intron | 35.0% | |
| ACCTGAAATACCATCATACA+TGG | + | chr5.4:63107352-63107371 | None:intergenic | 35.0% | |
| AGACACAGTCAAATATACCT+TGG | - | chr5.4:63108173-63108192 | MS.gene50141:CDS | 35.0% | |
| AGCAAACTGACAAAGATAGA+TGG | - | chr5.4:63106939-63106958 | MS.gene50141:intron | 35.0% | |
| AGCTAGGTAAAGTAACATAC+TGG | + | chr5.4:63106174-63106193 | None:intergenic | 35.0% | |
| AGTTTCTCCAAAGTCATCTT+GGG | + | chr5.4:63109249-63109268 | None:intergenic | 35.0% | |
| ATACACTGTGAACAACCAAA+TGG | - | chr5.4:63108626-63108645 | MS.gene50141:intron | 35.0% | |
| ATCAACAAGACATCACAAGA+GGG | - | chr5.4:63106990-63107009 | MS.gene50141:intron | 35.0% | |
| ATCAAGAGTGGATCTTACTA+TGG | - | chr5.4:63109378-63109397 | MS.gene50141:intron | 35.0% | |
| ATCTGGATTTGGATTCTCTA+TGG | - | chr5.4:63106364-63106383 | MS.gene50141:intron | 35.0% | |
| ATTGGTTGAATTGTCTGGTT+CGG | - | chr5.4:63107271-63107290 | MS.gene50141:intron | 35.0% | |
| CAAACTGACAAAGATAGATG+GGG | - | chr5.4:63106941-63106960 | MS.gene50141:intron | 35.0% | |
| CACAAATTGAGTCTAGACTT+AGG | + | chr5.4:63109685-63109704 | None:intergenic | 35.0% | |
| CAGGAAGTTGAACATTTGTT+GGG | + | chr5.4:63108683-63108702 | None:intergenic | 35.0% | |
| CAGTATATGCTTCAATTGCA+TGG | + | chr5.4:63107672-63107691 | None:intergenic | 35.0% | |
| CTAACACTCACATTTGGATT+GGG | + | chr5.4:63108330-63108349 | None:intergenic | 35.0% | |
| CTGAGATGTACGATCATAAT+AGG | + | chr5.4:63106421-63106440 | None:intergenic | 35.0% | |
| CTTCCAAAGAATGATGAACT+TGG | + | chr5.4:63106830-63106849 | None:intergenic | 35.0% | |
| GACTGTGTCTATTTACAATC+CGG | + | chr5.4:63108163-63108182 | None:intergenic | 35.0% | |
| GATGTACGATCATAATAGGA+CGG | + | chr5.4:63106417-63106436 | None:intergenic | 35.0% | |
| GATTTAGGAAAAGTCCTTCA+AGG | - | chr5.4:63109595-63109614 | MS.gene50141:CDS | 35.0% | |
| GCAAACTGACAAAGATAGAT+GGG | - | chr5.4:63106940-63106959 | MS.gene50141:intron | 35.0% | |
| GCTGGAATTGTCAAATCATA+TGG | + | chr5.4:63108436-63108455 | None:intergenic | 35.0% | |
| GTTCAATTGGTTGAATTGTC+TGG | - | chr5.4:63107266-63107285 | MS.gene50141:intron | 35.0% | |
| GTTCCAAGTTCATCATTCTT+TGG | - | chr5.4:63106824-63106843 | MS.gene50141:intron | 35.0% | |
| TATAGTATGATATGACGGTC+TGG | - | chr5.4:63106511-63106530 | MS.gene50141:intron | 35.0% | |
| TCAATCATAGACCAAAATGG+AGG | - | chr5.4:63110281-63110300 | MS.gene50141:intron | 35.0% | |
| TCAATTGGCAGACAAGTATT+TGG | - | chr5.4:63109320-63109339 | MS.gene50141:intron | 35.0% | |
| TCCTCTAATTCTTGGTATCT+GGG | - | chr5.4:63107750-63107769 | MS.gene50141:intron | 35.0% | |
| TCTAACACTCACATTTGGAT+TGG | + | chr5.4:63108331-63108350 | None:intergenic | 35.0% | |
| TCTAGAAGAGAACTTACCAA+TGG | + | chr5.4:63108925-63108944 | None:intergenic | 35.0% | |
| TCTCTTAGAACAGAATGAGT+AGG | - | chr5.4:63109026-63109045 | MS.gene50141:intron | 35.0% | |
| TCTTATGAGTACATTAGCAC+TGG | - | chr5.4:63107079-63107098 | MS.gene50141:intron | 35.0% | |
| TGACACTAATACGTAGACAT+TGG | + | chr5.4:63106731-63106750 | None:intergenic | 35.0% | |
| TGCAATGTAAAAACCATCCA+TGG | + | chr5.4:63107390-63107409 | None:intergenic | 35.0% | |
| TGTTAACCGTTCAATGTGTT+AGG | + | chr5.4:63109720-63109739 | None:intergenic | 35.0% | |
| TTCATAAACGATCTTGATGC+AGG | - | chr5.4:63108576-63108595 | MS.gene50141:intron | 35.0% | |
| TTCCTCTAATTCTTGGTATC+TGG | - | chr5.4:63107749-63107768 | MS.gene50141:intron | 35.0% | |
| TTGTGCAGTTCCAATTCAAT+CGG | + | chr5.4:63107215-63107234 | None:intergenic | 35.0% | |
| ! | AGATTTCTTTGGTGCACTTA+GGG | - | chr5.4:63109116-63109135 | MS.gene50141:intron | 35.0% |
| ! | ATGATGATGAAGTGAGAAAG+TGG | - | chr5.4:63109148-63109167 | MS.gene50141:intron | 35.0% |
| ! | GACTGTTTGTTACCCTTTAT+CGG | + | chr5.4:63109923-63109942 | None:intergenic | 35.0% |
| ! | GATCGTATTGGTGTTTGTAA+AGG | - | chr5.4:63108831-63108850 | MS.gene50141:intron | 35.0% |
| ! | GTTTTGTGTCCAACATTTAC+CGG | + | chr5.4:63108356-63108375 | None:intergenic | 35.0% |
| ! | TAGACATGATAATGTACCTG+AGG | - | chr5.4:63108860-63108879 | MS.gene50141:intron | 35.0% |
| !! | ATCTTGGGTTGATCAAAAGT+TGG | + | chr5.4:63109234-63109253 | None:intergenic | 35.0% |
| !! | TTACATTGCACCTGCTTTTA+TGG | - | chr5.4:63107400-63107419 | MS.gene50141:CDS | 35.0% |
| AAAAGTTGGAGGTCCTTCTT+TGG | + | chr5.4:63109220-63109239 | None:intergenic | 40.0% | |
| AAGATTGTTGACACTTTCCC+CGG | - | chr5.4:63108894-63108913 | MS.gene50141:CDS | 40.0% | |
| AAGCTTGTGAACTCCAAAGA+AGG | - | chr5.4:63109204-63109223 | MS.gene50141:intron | 40.0% | |
| AATTGGAAGGAGAAGATGCA+AGG | - | chr5.4:63109649-63109668 | MS.gene50141:CDS | 40.0% | |
| ACAAGCTTGTCCATAAAAGC+AGG | + | chr5.4:63107413-63107432 | None:intergenic | 40.0% | |
| ATTATAGGGACTAGGTACCA+AGG | - | chr5.4:63110204-63110223 | MS.gene50141:intron | 40.0% | |
| CAAATGTGAGTGTTAGACAC+CGG | - | chr5.4:63108334-63108353 | MS.gene50141:intron | 40.0% | |
| CACTGCATTGCGAAAAATTG+TGG | + | chr5.4:63108056-63108075 | None:intergenic | 40.0% | |
| CAGTTTCTCCAAAGTCATCT+TGG | + | chr5.4:63109250-63109269 | None:intergenic | 40.0% | |
| CATCATCACTTCTAGCAGTT+GGG | + | chr5.4:63110529-63110548 | None:intergenic | 40.0% | |
| CATGCTTCAACCGATTGAAT+TGG | - | chr5.4:63107202-63107221 | MS.gene50141:intron | 40.0% | |
| CCAAACACAAAGGTTTCATC+TGG | - | chr5.4:63106878-63106897 | MS.gene50141:intron | 40.0% | |
| CCAACAAATGTTCAACTTCC+TGG | - | chr5.4:63108681-63108700 | MS.gene50141:intron | 40.0% | |
| CCAATACGATCTTCTCTTGT+AGG | + | chr5.4:63108822-63108841 | None:intergenic | 40.0% | |
| CCAGATGAAACCTTTGTGTT+TGG | + | chr5.4:63106881-63106900 | None:intergenic | 40.0% | |
| CCAGGAAGTTGAACATTTGT+TGG | + | chr5.4:63108684-63108703 | None:intergenic | 40.0% | |
| CCTACAAGAGAAGATCGTAT+TGG | - | chr5.4:63108819-63108838 | MS.gene50141:intron | 40.0% | |
| CCTCTAATTCTTGGTATCTG+GGG | - | chr5.4:63107751-63107770 | MS.gene50141:intron | 40.0% | |
| CTTCGACCTAACACATTGAA+CGG | - | chr5.4:63109711-63109730 | MS.gene50141:CDS | 40.0% | |
| CTTGACTCTGCCTAATATCA+AGG | - | chr5.4:63107454-63107473 | MS.gene50141:CDS | 40.0% | |
| GACGGTCTAGATTGTTTGAT+TGG | + | chr5.4:63106399-63106418 | None:intergenic | 40.0% | |
| GAGCTTGTCTTTGCTAAGAT+GGG | - | chr5.4:63107805-63107824 | MS.gene50141:CDS | 40.0% | |
| GATCAACAAGACATCACAAG+AGG | - | chr5.4:63106989-63107008 | MS.gene50141:intron | 40.0% | |
| GCAGCAGACATAATACGAAA+AGG | - | chr5.4:63108537-63108556 | MS.gene50141:intron | 40.0% | |
| GCTTAAAGAAAGTTACCTCG+AGG | - | chr5.4:63106852-63106871 | MS.gene50141:intron | 40.0% | |
| GGCTGTCAACAAAGATAGAA+CGG | + | chr5.4:63108282-63108301 | None:intergenic | 40.0% | |
| GTAAGTATTCCTGTTCCTGA+AGG | - | chr5.4:63110473-63110492 | MS.gene50141:intron | 40.0% | |
| GTCCTTTAATGTGTACGATC+AGG | - | chr5.4:63109757-63109776 | MS.gene50141:CDS | 40.0% | |
| TAATGAGTTCCAGCATCTTG+TGG | + | chr5.4:63107046-63107065 | None:intergenic | 40.0% | |
| TCATTTCCGATGTGTCTCAT+AGG | - | chr5.4:63106748-63106767 | MS.gene50141:intron | 40.0% | |
| TGACGTTGCAAATATAACCG+TGG | + | chr5.4:63107970-63107989 | None:intergenic | 40.0% | |
| TGAGCTTGTCTTTGCTAAGA+TGG | - | chr5.4:63107804-63107823 | MS.gene50141:CDS | 40.0% | |
| TGATCAACCCAAGATGACTT+TGG | - | chr5.4:63109239-63109258 | MS.gene50141:CDS | 40.0% | |
| TGCCTGATCGTACACATTAA+AGG | + | chr5.4:63109762-63109781 | None:intergenic | 40.0% | |
| TGGCAGACAAGTATTTGGAA+GGG | - | chr5.4:63109325-63109344 | MS.gene50141:intron | 40.0% | |
| TGTTAGACACCGGTAAATGT+TGG | - | chr5.4:63108344-63108363 | MS.gene50141:intron | 40.0% | |
| TTGATGTCTTTACACGTCGT+CGG | + | chr5.4:63107600-63107619 | None:intergenic | 40.0% | |
| TTGGAGAAACTGTTGGAGTA+TGG | - | chr5.4:63109258-63109277 | MS.gene50141:CDS | 40.0% | |
| TTGGCAGACAAGTATTTGGA+AGG | - | chr5.4:63109324-63109343 | MS.gene50141:intron | 40.0% | |
| ! | AAAAGTTCCCGACACTGATT+CGG | - | chr5.4:63107165-63107184 | MS.gene50141:intron | 40.0% |
| ! | CAGATTTCTTTGGTGCACTT+AGG | - | chr5.4:63109115-63109134 | MS.gene50141:intron | 40.0% |
| ! | CTTCAGGTTCCTCTAATTCT+TGG | - | chr5.4:63107742-63107761 | MS.gene50141:intron | 40.0% |
| ! | CTTTGTCGAATTAGTTTCGC+TGG | + | chr5.4:63108507-63108526 | None:intergenic | 40.0% |
| ! | GACTTAATTGGTATTGGGCA+AGG | - | chr5.4:63106443-63106462 | MS.gene50141:intron | 40.0% |
| ! | GATGACTTTGGAGAAACTGT+TGG | - | chr5.4:63109251-63109270 | MS.gene50141:CDS | 40.0% |
| ! | GTGTTGGCATTGAAACCATT+GGG | - | chr5.4:63109178-63109197 | MS.gene50141:intron | 40.0% |
| !! | AACTTACCAATGGATTGACC+GGG | + | chr5.4:63108915-63108934 | None:intergenic | 40.0% |
| !! | CCAAGATCCGCTTTAAAATC+TGG | - | chr5.4:63108255-63108274 | MS.gene50141:intron | 40.0% |
| !! | GAACGGTCCAGATTTTAAAG+CGG | + | chr5.4:63108265-63108284 | None:intergenic | 40.0% |
| !! | GAACTTACCAATGGATTGAC+CGG | + | chr5.4:63108916-63108935 | None:intergenic | 40.0% |
| !! | GTTCACAAGCTTTTTCCCAA+TGG | + | chr5.4:63109196-63109215 | None:intergenic | 40.0% |
| !! | TTGAATTGTCTGGTTCGGTT+CGG | - | chr5.4:63107276-63107295 | MS.gene50141:intron | 40.0% |
| !! | TTGGGTTGATCAAAAGTTGG+AGG | + | chr5.4:63109231-63109250 | None:intergenic | 40.0% |
| !!! | CCAGATTTTAAAGCGGATCT+TGG | + | chr5.4:63108258-63108277 | None:intergenic | 40.0% |
| !!! | CGGTTCGGTTTTTGAAAGAT+TGG | - | chr5.4:63107291-63107310 | MS.gene50141:intron | 40.0% |
| AACCTTGACAACACCATGGA+TGG | - | chr5.4:63107374-63107393 | MS.gene50141:CDS | 45.0% | |
| ACAAGACATCACAAGAGGGA+AGG | - | chr5.4:63106994-63107013 | MS.gene50141:intron | 45.0% | |
| ACTGACAAAGATAGATGGGG+AGG | - | chr5.4:63106944-63106963 | MS.gene50141:intron | 45.0% | |
| AGGCAGAGTCAAGAAGTTCT+TGG | + | chr5.4:63107447-63107466 | None:intergenic | 45.0% | |
| ATACGACCGTCACGAATAAG+AGG | + | chr5.4:63108780-63108799 | None:intergenic | 45.0% | |
| CAAAGATAGATGGGGAGGTT+TGG | - | chr5.4:63106949-63106968 | MS.gene50141:intron | 45.0% | |
| CAAGACATCACAAGAGGGAA+GGG | - | chr5.4:63106995-63107014 | MS.gene50141:intron | 45.0% | |
| CAGTTGAGCTTGAATAGCTC+TGG | - | chr5.4:63106788-63106807 | MS.gene50141:intron | 45.0% | |
| CCAACTGCTAGAAGTGATGA+TGG | - | chr5.4:63110527-63110546 | MS.gene50141:intron | 45.0% | |
| CCATCATCACTTCTAGCAGT+TGG | + | chr5.4:63110530-63110549 | None:intergenic | 45.0% | |
| CCCCAGATACCAAGAATTAG+AGG | + | chr5.4:63107754-63107773 | None:intergenic | 45.0% | |
| CGGTGTCTAACACTCACATT+TGG | + | chr5.4:63108336-63108355 | None:intergenic | 45.0% | |
| CGTGTGCCTATCATTGTTAC+TGG | - | chr5.4:63108729-63108748 | MS.gene50141:intron | 45.0% | |
| CTAATTCTTGGTATCTGGGG+AGG | - | chr5.4:63107754-63107773 | MS.gene50141:intron | 45.0% | |
| CTAGACCGTCTGATCTTGAT+TGG | + | chr5.4:63108203-63108222 | None:intergenic | 45.0% | |
| CTCCAGCACTCATCATGATA+GGG | + | chr5.4:63108458-63108477 | None:intergenic | 45.0% | |
| CTCGAGGTTTCCAAACACAA+AGG | - | chr5.4:63106868-63106887 | MS.gene50141:intron | 45.0% | |
| CTTTGTGTTTGGAAACCTCG+AGG | + | chr5.4:63106870-63106889 | None:intergenic | 45.0% | |
| GAGCTAGAAAGTGGAAATGC+AGG | - | chr5.4:63108477-63108496 | MS.gene50141:intron | 45.0% | |
| GAGTCAACAGTCGATGTGTT+CGG | + | chr5.4:63109001-63109020 | None:intergenic | 45.0% | |
| GGCAGACAAGTATTTGGAAG+GGG | - | chr5.4:63109326-63109345 | MS.gene50141:intron | 45.0% | |
| GTAACCTCATATGTCGGATC+CGG | - | chr5.4:63108141-63108160 | MS.gene50141:CDS | 45.0% | |
| GTACAACCTTGACAACACCA+TGG | - | chr5.4:63107370-63107389 | MS.gene50141:CDS | 45.0% | |
| GTCGTCCAATCAAGATCAGA+CGG | - | chr5.4:63108195-63108214 | MS.gene50141:CDS | 45.0% | |
| TACGCTCCTCTTATTCGTGA+CGG | - | chr5.4:63108771-63108790 | MS.gene50141:intron | 45.0% | |
| TAGCAAAGACAAGCTCAGCT+TGG | + | chr5.4:63107801-63107820 | None:intergenic | 45.0% | |
| TCCTGTTCCTGAAGGTTGTA+CGG | - | chr5.4:63110481-63110500 | MS.gene50141:intron | 45.0% | |
| TCTCCAGCACTCATCATGAT+AGG | + | chr5.4:63108459-63108478 | None:intergenic | 45.0% | |
| TCTTATTCGTGACGGTCGTA+TGG | - | chr5.4:63108779-63108798 | MS.gene50141:intron | 45.0% | |
| TGATCTTGATTGGACGACCA+AGG | + | chr5.4:63108193-63108212 | None:intergenic | 45.0% | |
| TGTGTACGATCAGGCACAAT+CGG | - | chr5.4:63109766-63109785 | MS.gene50141:CDS | 45.0% | |
| TTTGGATCCGTACAACCTTC+AGG | + | chr5.4:63110491-63110510 | None:intergenic | 45.0% | |
| ! | AGCAGTTGGGTCGAAGTTTT+TGG | + | chr5.4:63110516-63110535 | None:intergenic | 45.0% |
| ! | CACATGTGTCACTAACGTGT+TGG | + | chr5.4:63106669-63106688 | None:intergenic | 45.0% |
| ! | GTAAAGCGGTTTTGCAACCA+CGG | - | chr5.4:63107950-63107969 | MS.gene50141:CDS | 45.0% |
| !! | AACCATCCATGGTGTTGTCA+AGG | + | chr5.4:63107379-63107398 | None:intergenic | 45.0% |
| !! | ACTTACCAATGGATTGACCG+GGG | + | chr5.4:63108914-63108933 | None:intergenic | 45.0% |
| !! | AGAAAGTGGATTGCTGGTGT+TGG | - | chr5.4:63109162-63109181 | MS.gene50141:intron | 45.0% |
| !! | GAAGTGAGAAAGTGGATTGC+TGG | - | chr5.4:63109156-63109175 | MS.gene50141:intron | 45.0% |
| !! | GCGCTGGTTCATAGTTCAAT+TGG | - | chr5.4:63107253-63107272 | MS.gene50141:intron | 45.0% |
| !! | GGTGTTGGCATTGAAACCAT+TGG | - | chr5.4:63109177-63109196 | MS.gene50141:intron | 45.0% |
| !!! | GGGTCGAAGTTTTTGGCATT+TGG | + | chr5.4:63110509-63110528 | None:intergenic | 45.0% |
| !!! | TTTTTTAAATCTAAAATATT+TGG | + | chr5.4:63108234-63108253 | None:intergenic | 5.0% |
| AACGATCTTGATGCAGGAGC+CGG | - | chr5.4:63108582-63108601 | MS.gene50141:intron | 50.0% | |
| AATTGAACCGTAGACAGCGC+TGG | - | chr5.4:63107237-63107256 | MS.gene50141:intron | 50.0% | |
| ACTTTCCCCGGTCAATCCAT+TGG | - | chr5.4:63108906-63108925 | MS.gene50141:CDS | 50.0% | |
| AGCACTCATCATGATAGGGC+TGG | + | chr5.4:63108454-63108473 | None:intergenic | 50.0% | |
| AGCCCTATCATGATGAGTGC+TGG | - | chr5.4:63108453-63108472 | MS.gene50141:intron | 50.0% | |
| ATCTGGGGAGGTAAAGGTCA+AGG | - | chr5.4:63107766-63107785 | MS.gene50141:intron | 50.0% | |
| CAATCCGGATCCGACATATG+AGG | + | chr5.4:63108148-63108167 | None:intergenic | 50.0% | |
| CATCACAAGAGGGAAGGGTA+TGG | - | chr5.4:63107000-63107019 | MS.gene50141:intron | 50.0% | |
| CTATGAACCAGCGCTGTCTA+CGG | + | chr5.4:63107247-63107266 | None:intergenic | 50.0% | |
| CTTGGTATCTGGGGAGGTAA+AGG | - | chr5.4:63107760-63107779 | MS.gene50141:intron | 50.0% | |
| GCAAGGACCGACTAATCTAG+CGG | - | chr5.4:63106460-63106479 | MS.gene50141:intron | 50.0% | |
| GTGGTGGTCACCATGTATGA+TGG | - | chr5.4:63107339-63107358 | MS.gene50141:CDS | 50.0% | |
| GTGTGACTGCACACGCATAT+CGG | + | chr5.4:63108303-63108322 | None:intergenic | 50.0% | |
| TATTTGGAAGGGGCTGCTCT+TGG | - | chr5.4:63109336-63109355 | MS.gene50141:intron | 50.0% | |
| TCAGCTGTTAGAGCTGTCAG+TGG | - | chr5.4:63106144-63106163 | MS.gene50141:CDS | 50.0% | |
| TCCGTACAACCTTCAGGAAC+AGG | + | chr5.4:63110485-63110504 | None:intergenic | 50.0% | |
| TCGGTTGAAGCATGACCTAG+TGG | + | chr5.4:63107196-63107215 | None:intergenic | 50.0% | |
| TGTTGTTCCACCCATACGAC+CGG | + | chr5.4:63108604-63108623 | None:intergenic | 50.0% | |
| TTCCAAGCACCACAAGATGC+TGG | - | chr5.4:63107034-63107053 | MS.gene50141:intron | 50.0% | |
| TTCCAGCATCTTGTGGTGCT+TGG | + | chr5.4:63107039-63107058 | None:intergenic | 50.0% | |
| ! | AGCTCTAACAGCTGAGACTG+AGG | + | chr5.4:63106139-63106158 | None:intergenic | 50.0% |
| ! | AGTGCTGGAGAGCTAGAAAG+TGG | - | chr5.4:63108468-63108487 | MS.gene50141:intron | 50.0% |
| ! | GACTGGTCCGCTAGATTAGT+CGG | + | chr5.4:63106470-63106489 | None:intergenic | 50.0% |
| ! | TAATCTAGCGGACCAGTCCA+TGG | - | chr5.4:63106472-63106491 | MS.gene50141:intron | 50.0% |
| ! | TGGTCTTGCCGAATCAGTGT+CGG | + | chr5.4:63107176-63107195 | None:intergenic | 50.0% |
| !! | ACTGATTCGGCAAGACCACT+AGG | - | chr5.4:63107178-63107197 | MS.gene50141:intron | 50.0% |
| GGTCTTGCCGAATCAGTGTC+GGG | + | chr5.4:63107175-63107194 | None:intergenic | 55.0% | |
| GATGCAGGAGCCGGTCGTAT+GGG | - | chr5.4:63108591-63108610 | MS.gene50141:intron | 60.0% | |
| TGATGCAGGAGCCGGTCGTA+TGG | - | chr5.4:63108590-63108609 | MS.gene50141:intron | 60.0% | |
| GCAGGAGCCGGTCGTATGGG+TGG | - | chr5.4:63108594-63108613 | MS.gene50141:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 63106129 | 63110574 | 63106129 | ID=MS.gene50141 |
| chr5.4 | mRNA | 63106129 | 63110574 | 63106129 | ID=MS.gene50141.t1;Parent=MS.gene50141 |
| chr5.4 | exon | 63110530 | 63110574 | 63110530 | ID=MS.gene50141.t1.exon1;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63110530 | 63110574 | 63110530 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63109593 | 63109912 | 63109593 | ID=MS.gene50141.t1.exon2;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63109593 | 63109912 | 63109593 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63109228 | 63109333 | 63109228 | ID=MS.gene50141.t1.exon3;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63109228 | 63109333 | 63109228 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63108870 | 63108955 | 63108870 | ID=MS.gene50141.t1.exon4;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63108870 | 63108955 | 63108870 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63107776 | 63108248 | 63107776 | ID=MS.gene50141.t1.exon5;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63107776 | 63108248 | 63107776 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63107304 | 63107585 | 63107304 | ID=MS.gene50141.t1.exon6;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63107304 | 63107585 | 63107304 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| chr5.4 | exon | 63106129 | 63106247 | 63106129 | ID=MS.gene50141.t1.exon7;Parent=MS.gene50141.t1 |
| chr5.4 | CDS | 63106129 | 63106247 | 63106129 | ID=cds.MS.gene50141.t1;Parent=MS.gene50141.t1 |
| Gene Sequence |
| Protein sequence |
