Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52627.t1 | XP_013469022.1 | 94.6 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 1.00E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52627.t1 | Q94AH1 | 65.4 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 2.0e-107 | 390.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52627.t1 | I3SZ53 | 94.6 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 7.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene52627 | 0.817178 | 3.77E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene52627 | 0.871076 | 9.00E-67 | -1.69E-46 |
| MS.gene049343 | MS.gene52627 | 0.843422 | 1.42E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene52627 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene52627 | 0.857747 | 1.32E-62 | -1.69E-46 |
| MS.gene049807 | MS.gene52627 | 0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene52627 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene52627 | 0.828133 | 1.06E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene52627 | 0.816513 | 5.32E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene52627 | 0.808343 | 3.25E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene52627 | 0.824598 | 7.40E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene52627 | 0.866942 | 1.97E-65 | -1.69E-46 |
| MS.gene050561 | MS.gene52627 | 0.856161 | 3.88E-62 | -1.69E-46 |
| MS.gene050562 | MS.gene52627 | 0.843224 | 1.60E-58 | -1.69E-46 |
| MS.gene051181 | MS.gene52627 | 0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene52627 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene52627 | 0.818916 | 1.53E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene52627 | 0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene52627 | 0.875184 | 3.76E-68 | -1.69E-46 |
| MS.gene051957 | MS.gene52627 | 0.821399 | 4.12E-53 | -1.69E-46 |
| MS.gene052239 | MS.gene52627 | -0.831638 | 1.49E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene52627 | 0.828671 | 7.90E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene52627 | 0.859917 | 2.97E-63 | -1.69E-46 |
| MS.gene052533 | MS.gene52627 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene52627 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene52627 | 0.824637 | 7.25E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene52627 | 0.812636 | 3.84E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene52627 | 0.806323 | 8.70E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene52627 | 0.818674 | 1.73E-52 | -1.69E-46 |
| MS.gene053145 | MS.gene52627 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene52627 | 0.867805 | 1.04E-65 | -1.69E-46 |
| MS.gene053272 | MS.gene52627 | -0.838793 | 2.33E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene52627 | 0.819332 | 1.23E-52 | -1.69E-46 |
| MS.gene053931 | MS.gene52627 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene52627 | 0.805147 | 1.54E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene52627 | 0.82033 | 7.26E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene52627 | 0.811164 | 8.03E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene52627 | 0.806873 | 6.66E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene52627 | 0.883803 | 3.29E-71 | -1.69E-46 |
| MS.gene054775 | MS.gene52627 | 0.819252 | 1.28E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene52627 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene055374 | MS.gene52627 | 0.823553 | 1.30E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene52627 | 0.841873 | 3.65E-58 | -1.69E-46 |
| MS.gene055589 | MS.gene52627 | 0.83824 | 3.24E-57 | -1.69E-46 |
| MS.gene055778 | MS.gene52627 | 0.803885 | 2.82E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene52627 | 0.851622 | 7.87E-61 | -1.69E-46 |
| MS.gene055841 | MS.gene52627 | 0.822024 | 2.95E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene52627 | 0.829048 | 6.40E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene52627 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene52627 | 0.861291 | 1.14E-63 | -1.69E-46 |
| MS.gene056595 | MS.gene52627 | 0.801863 | 7.37E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene52627 | 0.845957 | 2.94E-59 | -1.69E-46 |
| MS.gene056776 | MS.gene52627 | 0.80305 | 4.19E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene52627 | 0.865495 | 5.67E-65 | -1.69E-46 |
| MS.gene05690 | MS.gene52627 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene52627 | 0.803392 | 3.56E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene52627 | 0.807428 | 5.08E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene52627 | 0.851395 | 9.12E-61 | -1.69E-46 |
| MS.gene057208 | MS.gene52627 | 0.851144 | 1.07E-60 | -1.69E-46 |
| MS.gene057444 | MS.gene52627 | 0.824283 | 8.78E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene52627 | 0.809381 | 1.95E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene52627 | 0.820896 | 5.38E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene52627 | 0.834174 | 3.49E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene52627 | 0.838221 | 3.27E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene52627 | 0.813766 | 2.17E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene52627 | 0.864405 | 1.25E-64 | -1.69E-46 |
| MS.gene058781 | MS.gene52627 | 0.811956 | 5.40E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene52627 | 0.852457 | 4.56E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene52627 | 0.842389 | 2.66E-58 | -1.69E-46 |
| MS.gene059015 | MS.gene52627 | 0.828036 | 1.12E-54 | -1.69E-46 |
| MS.gene059145 | MS.gene52627 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene52627 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene52627 | -0.859345 | 4.41E-63 | -1.69E-46 |
| MS.gene059965 | MS.gene52627 | 0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene52627 | 0.800201 | 1.61E-48 | -1.69E-46 |
| MS.gene060365 | MS.gene52627 | 0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene52627 | 0.815196 | 1.05E-51 | -1.69E-46 |
| MS.gene060525 | MS.gene52627 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene52627 | 0.809156 | 2.18E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene52627 | 0.842622 | 2.31E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene52627 | 0.828594 | 8.24E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene52627 | 0.803965 | 2.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52627.t1 | MTR_1g081910 | 94.613 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 0.0 | 563 |
| MS.gene52627.t1 | MTR_4g109480 | 58.935 | 263 | 94 | 2 | 37 | 285 | 24 | 286 | 7.86e-100 | 294 |
| MS.gene52627.t1 | MTR_4g109480 | 55.779 | 199 | 74 | 2 | 37 | 221 | 24 | 222 | 5.93e-69 | 214 |
| MS.gene52627.t1 | MTR_4g109480 | 52.632 | 190 | 76 | 2 | 37 | 212 | 24 | 213 | 4.57e-57 | 183 |
| MS.gene52627.t1 | MTR_4g109480 | 51.852 | 189 | 77 | 2 | 37 | 211 | 24 | 212 | 8.95e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52627.t1 | AT3G05010 | 65.411 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 3.27e-139 | 394 |
| MS.gene52627.t1 | AT5G27210 | 67.037 | 270 | 77 | 1 | 28 | 285 | 28 | 297 | 4.26e-130 | 371 |
Find 50 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCCTTGTTTACTTCTTC+TGG | 0.137493 | 1.1:+60734414 | MS.gene52627:CDS |
| TTCTTCTGGAATGCTGTTTC+TGG | 0.158996 | 1.1:+60734428 | MS.gene52627:CDS |
| CTCGTGCTCACCGTTGTTTA+TGG | 0.242634 | 1.1:+60734736 | MS.gene52627:CDS |
| TATTGTTCATGTATCATTCT+AGG | 0.242876 | 1.1:+60734764 | MS.gene52627:CDS |
| ACTGGAAACGGCGCTGGTTT+TGG | 0.246426 | 1.1:+60734962 | MS.gene52627:CDS |
| ACTGCTGTATATTACATTTC+TGG | 0.250927 | 1.1:+60735123 | MS.gene52627:CDS |
| CTATATATCTATTTGCATTT+GGG | 0.257819 | 1.1:+60734644 | MS.gene52627:CDS |
| TTGTTTGCTTGCGGGCTTAC+TGG | 0.258766 | 1.1:+60734944 | MS.gene52627:CDS |
| CAATTGCATTGTTTGCTTGC+GGG | 0.288884 | 1.1:+60734936 | MS.gene52627:CDS |
| GCTATATATCTATTTGCATT+TGG | 0.295526 | 1.1:+60734643 | MS.gene52627:CDS |
| ACAAAAGAATTACCTTTAAC+AGG | 0.300915 | 1.1:-60734554 | None:intergenic |
| TCGTGCTCACCGTTGTTTAT+GGG | 0.323009 | 1.1:+60734737 | MS.gene52627:CDS |
| ATACAGCAGTGGAAGATAAA+AGG | 0.326151 | 1.1:-60735110 | None:intergenic |
| CAGGCATGGGAGTGCACTCC+TGG | 0.335049 | 1.1:+60734369 | MS.gene52627:intron |
| GTTTCTGGAAGTGAGCTTGC+TGG | 0.348925 | 1.1:+60734443 | MS.gene52627:CDS |
| GAAGATTCTTCTTCTTCTAC+TGG | 0.367957 | 1.1:+60733405 | MS.gene52627:CDS |
| TTTCGTATTATGCTTCTCTT+TGG | 0.381366 | 1.1:+60733586 | MS.gene52627:CDS |
| GAAGCATTGACACGAACTTT+TGG | 0.389803 | 1.1:+60734501 | MS.gene52627:CDS |
| GGTATATCCGGTATCATTGT+TGG | 0.395818 | 1.1:+60734522 | MS.gene52627:CDS |
| TCGCTTGAAGTGGAACTTGT+GGG | 0.460605 | 1.1:+60734702 | MS.gene52627:CDS |
| TAACAAAGGGATTCACCGAT+TGG | 0.465604 | 1.1:+60733433 | MS.gene52627:CDS |
| TACTCTGAAATGAAAGATGC+TGG | 0.469422 | 1.1:+60735297 | MS.gene52627:CDS |
| AACAAAGGGATTCACCGATT+GGG | 0.473818 | 1.1:+60733434 | MS.gene52627:CDS |
| GATCAGTGTCGATGAACAAC+GGG | 0.476434 | 1.1:-60734669 | None:intergenic |
| GGGCTTACTGGAAACGGCGC+TGG | 0.478494 | 1.1:+60734956 | MS.gene52627:CDS |
| GCTTGCGGGCTTACTGGAAA+CGG | 0.488027 | 1.1:+60734950 | MS.gene52627:CDS |
| TTCCATGTTAGCTCTTTCCC+AGG | 0.494192 | 1.1:-60734387 | None:intergenic |
| ATCAAAACCAACAATGATAC+CGG | 0.504747 | 1.1:-60734529 | None:intergenic |
| GCAATTGCATTGTTTGCTTG+CGG | 0.512576 | 1.1:+60734935 | MS.gene52627:CDS |
| CTCGCTTGAAGTGGAACTTG+TGG | 0.521442 | 1.1:+60734701 | MS.gene52627:CDS |
| TATATATCTATTTGCATTTG+GGG | 0.524806 | 1.1:+60734645 | MS.gene52627:CDS |
| TTGTTCATCGACACTGATCA+TGG | 0.535592 | 1.1:+60734673 | MS.gene52627:CDS |
| CAACGGTGAGCACGAGCTTG+TGG | 0.536256 | 1.1:-60734729 | None:intergenic |
| CTCCTGGGAAAGAGCTAACA+TGG | 0.539196 | 1.1:+60734385 | MS.gene52627:CDS |
| ATCATTCTAGGTGGAGAGAA+AGG | 0.546944 | 1.1:+60734776 | MS.gene52627:CDS |
| ATGGTACTCCTCGCTTGAAG+TGG | 0.567386 | 1.1:+60734692 | MS.gene52627:CDS |
| CTTCAGGGAAATAATGCAAG+TGG | 0.588641 | 1.1:+60734474 | MS.gene52627:CDS |
| GTGACACTCGAAAACCCAAT+CGG | 0.591095 | 1.1:-60733448 | None:intergenic |
| AGGTGGAGAGAAAGGTTACC+CGG | 0.604674 | 1.1:+60734784 | MS.gene52627:CDS |
| AGGCATGGGAGTGCACTCCT+GGG | 0.610220 | 1.1:+60734370 | MS.gene52627:intron |
| ATCGGTGCTATCAATAACAA+AGG | 0.618733 | 1.1:+60733383 | MS.gene52627:CDS |
| CATTCCAGAAGAAGTAAACA+AGG | 0.620907 | 1.1:-60734418 | None:intergenic |
| CACAAGTTCCACTTCAAGCG+AGG | 0.621744 | 1.1:-60734700 | None:intergenic |
| TATGATATAAGAGCGACCAT+TGG | 0.623291 | 1.1:-60733562 | None:intergenic |
| TGATCAGTGTCGATGAACAA+CGG | 0.625959 | 1.1:-60734670 | None:intergenic |
| ATAACATACTTGTAAAACGC+AGG | 0.629597 | 1.1:-60734893 | None:intergenic |
| GCAGTGGAAGATAAAAGGCA+TGG | 0.634056 | 1.1:-60735105 | None:intergenic |
| TGTTCATGTATCATTCTAGG+TGG | 0.650713 | 1.1:+60734767 | MS.gene52627:CDS |
| AGAAATGTAATATACAGCAG+TGG | 0.653445 | 1.1:-60735121 | None:intergenic |
| CAATATGAGCCCATAAACAA+CGG | 0.679882 | 1.1:-60734746 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGCTGTTTATCTAAA+TGG | + | chr1.1:60733772-60733791 | MS.gene52627:intron | 20.0% |
| !! | CTATATATCTATTTGCATTT+GGG | + | chr1.1:60734644-60734663 | MS.gene52627:CDS | 20.0% |
| !! | TATATATCTATTTGCATTTG+GGG | + | chr1.1:60734645-60734664 | MS.gene52627:CDS | 20.0% |
| !!! | CTTGTTTCATTTTTATTTCA+AGG | + | chr1.1:60733664-60733683 | MS.gene52627:intron | 20.0% |
| ! | AAGATAGCTTATGAAAATCT+AGG | + | chr1.1:60733936-60733955 | MS.gene52627:intron | 25.0% |
| ! | AATAAGCTGAAAACATCTTA+TGG | - | chr1.1:60733902-60733921 | None:intergenic | 25.0% |
| ! | ACAAAAGAATTACCTTTAAC+AGG | - | chr1.1:60734557-60734576 | None:intergenic | 25.0% |
| ! | ATTGTTCTTCTTTGTATTAC+AGG | + | chr1.1:60735245-60735264 | MS.gene52627:intron | 25.0% |
| ! | GCTATATATCTATTTGCATT+TGG | + | chr1.1:60734643-60734662 | MS.gene52627:CDS | 25.0% |
| ! | TATTGTTCATGTATCATTCT+AGG | + | chr1.1:60734764-60734783 | MS.gene52627:CDS | 25.0% |
| ! | TTAGAGAACATATGTTCTTA+TGG | + | chr1.1:60734107-60734126 | MS.gene52627:intron | 25.0% |
| !! | ATTGAGTTGTATATCTAAAC+AGG | + | chr1.1:60734172-60734191 | MS.gene52627:intron | 25.0% |
| !! | TAGATTTTCATAAGCTATCT+TGG | - | chr1.1:60733937-60733956 | None:intergenic | 25.0% |
| !! | TATCTAAATGGACTTAGTTA+GGG | + | chr1.1:60733784-60733803 | MS.gene52627:intron | 25.0% |
| !! | TTATCTAAATGGACTTAGTT+AGG | + | chr1.1:60733783-60733802 | MS.gene52627:intron | 25.0% |
| !! | TTGAGTTGTATATCTAAACA+GGG | + | chr1.1:60734173-60734192 | MS.gene52627:intron | 25.0% |
| !! | TTTTCTCTTCGTTTTGTATT+TGG | + | chr1.1:60733506-60733525 | MS.gene52627:CDS | 25.0% |
| !!! | TAGTTCTGAACTTTATTCTT+TGG | + | chr1.1:60735018-60735037 | MS.gene52627:intron | 25.0% |
| AAGAAAGAAAGAATGAAACC+TGG | - | chr1.1:60733647-60733666 | None:intergenic | 30.0% | |
| AATCCCTACAATTAACTTAC+CGG | - | chr1.1:60734806-60734825 | None:intergenic | 30.0% | |
| ACTGCTGTATATTACATTTC+TGG | + | chr1.1:60735123-60735142 | MS.gene52627:CDS | 30.0% | |
| AGAAAGAAAGAATGAAACCT+GGG | - | chr1.1:60733646-60733665 | None:intergenic | 30.0% | |
| AGAAATGTAATATACAGCAG+TGG | - | chr1.1:60735124-60735143 | None:intergenic | 30.0% | |
| ATAACATACTTGTAAAACGC+AGG | - | chr1.1:60734896-60734915 | None:intergenic | 30.0% | |
| ATCAAAACCAACAATGATAC+CGG | - | chr1.1:60734532-60734551 | None:intergenic | 30.0% | |
| ATGCAGTATTGTTTGTAGTT+TGG | + | chr1.1:60735211-60735230 | MS.gene52627:intron | 30.0% | |
| ATTTGTTCTGGTGATAATTC+AGG | + | chr1.1:60734350-60734369 | MS.gene52627:intron | 30.0% | |
| TATACAATGACATAAGCATG+AGG | + | chr1.1:60733833-60733852 | MS.gene52627:intron | 30.0% | |
| TTACAATGCGCTTTACTTTA+TGG | + | chr1.1:60735161-60735180 | MS.gene52627:intron | 30.0% | |
| TTTCGTATTATGCTTCTCTT+TGG | + | chr1.1:60733586-60733605 | MS.gene52627:CDS | 30.0% | |
| ! | CTGGTTATGTATGATTAGTT+TGG | + | chr1.1:60734605-60734624 | MS.gene52627:intron | 30.0% |
| ! | TTATATCCTTTTTCTCCCTT+TGG | + | chr1.1:60734323-60734342 | MS.gene52627:intron | 30.0% |
| !! | TCTACTGGAGTTTTAACAAA+GGG | + | chr1.1:60733420-60733439 | MS.gene52627:CDS | 30.0% |
| !! | TTCTACTGGAGTTTTAACAA+AGG | + | chr1.1:60733419-60733438 | MS.gene52627:CDS | 30.0% |
| AAAATCTAGGTAGTCAATCC+CGG | + | chr1.1:60733949-60733968 | MS.gene52627:intron | 35.0% | |
| AACTAGAATAGCAGCAACTA+AGG | - | chr1.1:60734199-60734218 | None:intergenic | 35.0% | |
| AATCATACATAACCAGCACA+AGG | - | chr1.1:60734601-60734620 | None:intergenic | 35.0% | |
| ACAAAGAAGAACAATCAGTC+AGG | - | chr1.1:60735240-60735259 | None:intergenic | 35.0% | |
| ACCAGAACAAATTCAACCAA+AGG | - | chr1.1:60734342-60734361 | None:intergenic | 35.0% | |
| ATACAGCAGTGGAAGATAAA+AGG | - | chr1.1:60735113-60735132 | None:intergenic | 35.0% | |
| ATATTTCATTGTCCTTGTGC+TGG | + | chr1.1:60734586-60734605 | MS.gene52627:intron | 35.0% | |
| ATCCCTACAATTAACTTACC+GGG | - | chr1.1:60734805-60734824 | None:intergenic | 35.0% | |
| ATTCAACCAAAGGGAGAAAA+AGG | - | chr1.1:60734332-60734351 | None:intergenic | 35.0% | |
| CAATATGAGCCCATAAACAA+CGG | - | chr1.1:60734749-60734768 | None:intergenic | 35.0% | |
| CATTCCAGAAGAAGTAAACA+AGG | - | chr1.1:60734421-60734440 | None:intergenic | 35.0% | |
| CCAGAACAAATTCAACCAAA+GGG | - | chr1.1:60734341-60734360 | None:intergenic | 35.0% | |
| CTGTGTTTACTTTATCTCAC+AGG | + | chr1.1:60735056-60735075 | MS.gene52627:intron | 35.0% | |
| GAAGATTCTTCTTCTTCTAC+TGG | + | chr1.1:60733405-60733424 | MS.gene52627:CDS | 35.0% | |
| GTTCTTCTTTGTATTACAGG+AGG | + | chr1.1:60735248-60735267 | MS.gene52627:intron | 35.0% | |
| TACCCGGTAAGTTAATTGTA+GGG | + | chr1.1:60734800-60734819 | MS.gene52627:intron | 35.0% | |
| TATGATATAAGAGCGACCAT+TGG | - | chr1.1:60733565-60733584 | None:intergenic | 35.0% | |
| TGTTCATGTATCATTCTAGG+TGG | + | chr1.1:60734767-60734786 | MS.gene52627:CDS | 35.0% | |
| TTACCCGGTAAGTTAATTGT+AGG | + | chr1.1:60734799-60734818 | MS.gene52627:intron | 35.0% | |
| ! | ACACGAACTTTTGGTATATC+CGG | + | chr1.1:60734510-60734529 | MS.gene52627:CDS | 35.0% |
| ! | AGCTTTTACAAACTCACCAA+TGG | + | chr1.1:60733546-60733565 | MS.gene52627:CDS | 35.0% |
| ! | AGTTTGGCGTTTTCTTTGTT+AGG | + | chr1.1:60734621-60734640 | MS.gene52627:intron | 35.0% |
| ! | TTGTCCTTGTTTACTTCTTC+TGG | + | chr1.1:60734414-60734433 | MS.gene52627:CDS | 35.0% |
| !! | ATCGGTGCTATCAATAACAA+AGG | + | chr1.1:60733383-60733402 | MS.gene52627:CDS | 35.0% |
| !! | TACTCTGAAATGAAAGATGC+TGG | + | chr1.1:60735297-60735316 | MS.gene52627:CDS | 35.0% |
| !!! | ATTTCTGGCAGACTTTTTTC+AGG | + | chr1.1:60735138-60735157 | MS.gene52627:CDS | 35.0% |
| !!! | TGGTTTTGATGTCCTGTTAA+AGG | + | chr1.1:60734542-60734561 | MS.gene52627:CDS | 35.0% |
| !!! | TGGTTTTTTCGAATCAGACT+GGG | + | chr1.1:60735317-60735336 | MS.gene52627:CDS | 35.0% |
| !!! | TTGCTGGCTTTTTTACTTCA+GGG | + | chr1.1:60734459-60734478 | MS.gene52627:CDS | 35.0% |
| ACATAAGCATGAGGCTGTTT+GGG | + | chr1.1:60733842-60733861 | MS.gene52627:intron | 40.0% | |
| ATCATTCTAGGTGGAGAGAA+AGG | + | chr1.1:60734776-60734795 | MS.gene52627:CDS | 40.0% | |
| CAATTGCATTGTTTGCTTGC+GGG | + | chr1.1:60734936-60734955 | MS.gene52627:CDS | 40.0% | |
| CTTCAGGGAAATAATGCAAG+TGG | + | chr1.1:60734474-60734493 | MS.gene52627:CDS | 40.0% | |
| GCAATTGCATTGTTTGCTTG+CGG | + | chr1.1:60734935-60734954 | MS.gene52627:CDS | 40.0% | |
| GGTATATCCGGTATCATTGT+TGG | + | chr1.1:60734522-60734541 | MS.gene52627:CDS | 40.0% | |
| TAACAAAGGGATTCACCGAT+TGG | + | chr1.1:60733433-60733452 | MS.gene52627:CDS | 40.0% | |
| TCTGGTGATAATTCAGGCAT+GGG | + | chr1.1:60734356-60734375 | MS.gene52627:intron | 40.0% | |
| TTAGCATTCTCAATCTCGCT+TGG | + | chr1.1:60733613-60733632 | MS.gene52627:intron | 40.0% | |
| TTCTGGTGATAATTCAGGCA+TGG | + | chr1.1:60734355-60734374 | MS.gene52627:intron | 40.0% | |
| TTGTTCATCGACACTGATCA+TGG | + | chr1.1:60734673-60734692 | MS.gene52627:CDS | 40.0% | |
| ! | AACAAAGGGATTCACCGATT+GGG | + | chr1.1:60733434-60733453 | MS.gene52627:CDS | 40.0% |
| ! | ACAGGAGGAAGATTTTCACA+TGG | + | chr1.1:60735263-60735282 | MS.gene52627:intron | 40.0% |
| ! | CCCTTTGGTTGAATTTGTTC+TGG | + | chr1.1:60734338-60734357 | MS.gene52627:intron | 40.0% |
| !! | TGATCAGTGTCGATGAACAA+CGG | - | chr1.1:60734673-60734692 | None:intergenic | 40.0% |
| !! | TTCTTCTGGAATGCTGTTTC+TGG | + | chr1.1:60734428-60734447 | MS.gene52627:CDS | 40.0% |
| !!! | CTGGTTTTTTCGAATCAGAC+TGG | + | chr1.1:60735316-60735335 | MS.gene52627:CDS | 40.0% |
| !!! | CTTGCTGGCTTTTTTACTTC+AGG | + | chr1.1:60734458-60734477 | MS.gene52627:CDS | 40.0% |
| !!! | GAAGCATTGACACGAACTTT+TGG | + | chr1.1:60734501-60734520 | MS.gene52627:CDS | 40.0% |
| AATCCATCCTTTGCAATCCC+CGG | - | chr1.1:60734026-60734045 | None:intergenic | 45.0% | |
| ATAAGCATGAGGCTGTTTGG+GGG | + | chr1.1:60733844-60733863 | MS.gene52627:intron | 45.0% | |
| CATAAGCATGAGGCTGTTTG+GGG | + | chr1.1:60733843-60733862 | MS.gene52627:intron | 45.0% | |
| GACATAAGCATGAGGCTGTT+TGG | + | chr1.1:60733841-60733860 | MS.gene52627:intron | 45.0% | |
| GCAGTGGAAGATAAAAGGCA+TGG | - | chr1.1:60735108-60735127 | None:intergenic | 45.0% | |
| GGACTTAGTTAGGGTCTGTT+TGG | + | chr1.1:60733793-60733812 | MS.gene52627:intron | 45.0% | |
| GTGACACTCGAAAACCCAAT+CGG | - | chr1.1:60733451-60733470 | None:intergenic | 45.0% | |
| TCGCTTGAAGTGGAACTTGT+GGG | + | chr1.1:60734702-60734721 | MS.gene52627:CDS | 45.0% | |
| TCGTGCTCACCGTTGTTTAT+GGG | + | chr1.1:60734737-60734756 | MS.gene52627:CDS | 45.0% | |
| ! | TTCCATGTTAGCTCTTTCCC+AGG | - | chr1.1:60734390-60734409 | None:intergenic | 45.0% |
| !! | ATCCCGTTATCCCACTTTTG+GGG | - | chr1.1:60733986-60734005 | None:intergenic | 45.0% |
| !! | GATCAGTGTCGATGAACAAC+GGG | - | chr1.1:60734672-60734691 | None:intergenic | 45.0% |
| !! | GATCCCGTTATCCCACTTTT+GGG | - | chr1.1:60733987-60734006 | None:intergenic | 45.0% |
| !!! | ATTGGGTTTTCGAGTGTCAC+GGG | + | chr1.1:60733451-60733470 | MS.gene52627:CDS | 45.0% |
| !!! | GATTGGGTTTTCGAGTGTCA+CGG | + | chr1.1:60733450-60733469 | MS.gene52627:CDS | 45.0% |
| !!! | TTTTCGAGTGTCACGGGTTT+TGG | + | chr1.1:60733457-60733476 | MS.gene52627:CDS | 45.0% |
| AGGCTGTTTGGGGGAACTTA+TGG | + | chr1.1:60733853-60733872 | MS.gene52627:intron | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | + | chr1.1:60733956-60733975 | MS.gene52627:intron | 50.0% | |
| AGGTGGAGAGAAAGGTTACC+CGG | + | chr1.1:60734784-60734803 | MS.gene52627:CDS | 50.0% | |
| ATCCCAGTTAGCAGGATCAC+CGG | + | chr1.1:60734004-60734023 | MS.gene52627:intron | 50.0% | |
| ATGGTACTCCTCGCTTGAAG+TGG | + | chr1.1:60734692-60734711 | MS.gene52627:CDS | 50.0% | |
| CACAAGTTCCACTTCAAGCG+AGG | - | chr1.1:60734703-60734722 | None:intergenic | 50.0% | |
| CGACCCCAAAAGTGGGATAA+CGG | + | chr1.1:60733980-60733999 | MS.gene52627:intron | 50.0% | |
| CTCCTGGGAAAGAGCTAACA+TGG | + | chr1.1:60734385-60734404 | MS.gene52627:CDS | 50.0% | |
| CTCGCTTGAAGTGGAACTTG+TGG | + | chr1.1:60734701-60734720 | MS.gene52627:CDS | 50.0% | |
| CTCGTGCTCACCGTTGTTTA+TGG | + | chr1.1:60734736-60734755 | MS.gene52627:CDS | 50.0% | |
| GACCCCAAAAGTGGGATAAC+GGG | + | chr1.1:60733981-60734000 | MS.gene52627:intron | 50.0% | |
| TTGTTTGCTTGCGGGCTTAC+TGG | + | chr1.1:60734944-60734963 | MS.gene52627:CDS | 50.0% | |
| ! | ATAACGGGATCCCAGTTAGC+AGG | + | chr1.1:60733996-60734015 | MS.gene52627:intron | 50.0% |
| ! | GGATCCCGTTATCCCACTTT+TGG | - | chr1.1:60733988-60734007 | None:intergenic | 50.0% |
| ! | GTTTCTGGAAGTGAGCTTGC+TGG | + | chr1.1:60734443-60734462 | MS.gene52627:CDS | 50.0% |
| AACGCAGGTCTTGCTGCAGA+AGG | - | chr1.1:60734881-60734900 | None:intergenic | 55.0% | |
| AGGATCACCGGGGATTGCAA+AGG | + | chr1.1:60734016-60734035 | MS.gene52627:intron | 55.0% | |
| ATAGCGGTCGACCCCAAAAG+TGG | + | chr1.1:60733972-60733991 | MS.gene52627:intron | 55.0% | |
| GCTTGCGGGCTTACTGGAAA+CGG | + | chr1.1:60734950-60734969 | MS.gene52627:CDS | 55.0% | |
| TAGCGGTCGACCCCAAAAGT+GGG | + | chr1.1:60733973-60733992 | MS.gene52627:intron | 55.0% | |
| TCACCGGGGATTGCAAAGGA+TGG | + | chr1.1:60734020-60734039 | MS.gene52627:intron | 55.0% | |
| TCCCAGTTAGCAGGATCACC+GGG | + | chr1.1:60734005-60734024 | MS.gene52627:intron | 55.0% | |
| !!! | ACGGCGCTGGTTTTGGTTTC+TGG | + | chr1.1:60734969-60734988 | MS.gene52627:CDS | 55.0% |
| !!! | ACTGGAAACGGCGCTGGTTT+TGG | + | chr1.1:60734962-60734981 | MS.gene52627:CDS | 55.0% |
| !!! | TCTCGCTTGGTGCTTTTCCC+AGG | + | chr1.1:60733626-60733645 | MS.gene52627:intron | 55.0% |
| !!! | TTTTGGGGTCGACCGCTATC+CGG | - | chr1.1:60733971-60733990 | None:intergenic | 55.0% |
| CAACGGTGAGCACGAGCTTG+TGG | - | chr1.1:60734732-60734751 | None:intergenic | 60.0% | |
| CCCAGTTAGCAGGATCACCG+GGG | + | chr1.1:60734006-60734025 | MS.gene52627:intron | 60.0% | |
| CCCCGGTGATCCTGCTAACT+GGG | - | chr1.1:60734009-60734028 | None:intergenic | 60.0% | |
| TCCCCGGTGATCCTGCTAAC+TGG | - | chr1.1:60734010-60734029 | None:intergenic | 60.0% | |
| ! | AGGCATGGGAGTGCACTCCT+GGG | + | chr1.1:60734370-60734389 | MS.gene52627:intron | 60.0% |
| ! | TTTGGGGTCGACCGCTATCC+GGG | - | chr1.1:60733970-60733989 | None:intergenic | 60.0% |
| GGGCTTACTGGAAACGGCGC+TGG | + | chr1.1:60734956-60734975 | MS.gene52627:CDS | 65.0% | |
| ! | CAGGCATGGGAGTGCACTCC+TGG | + | chr1.1:60734369-60734388 | MS.gene52627:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 60733372 | 60735344 | 60733372 | ID=MS.gene52627 |
| chr1.1 | mRNA | 60733372 | 60735344 | 60733372 | ID=MS.gene52627.t1;Parent=MS.gene52627 |
| chr1.1 | exon | 60733372 | 60733611 | 60733372 | ID=MS.gene52627.t1.exon1;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60733372 | 60733611 | 60733372 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| chr1.1 | exon | 60734372 | 60734563 | 60734372 | ID=MS.gene52627.t1.exon2;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60734372 | 60734563 | 60734372 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| chr1.1 | exon | 60734643 | 60734805 | 60734643 | ID=MS.gene52627.t1.exon3;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60734643 | 60734805 | 60734643 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| chr1.1 | exon | 60734888 | 60734990 | 60734888 | ID=MS.gene52627.t1.exon4;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60734888 | 60734990 | 60734888 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| chr1.1 | exon | 60735078 | 60735159 | 60735078 | ID=MS.gene52627.t1.exon5;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60735078 | 60735159 | 60735078 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| chr1.1 | exon | 60735267 | 60735344 | 60735267 | ID=MS.gene52627.t1.exon6;Parent=MS.gene52627.t1 |
| chr1.1 | CDS | 60735267 | 60735344 | 60735267 | ID=cds.MS.gene52627.t1;Parent=MS.gene52627.t1 |
| Gene Sequence |
| Protein sequence |
