Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54635.t1 | KEH24854.1 | 99.3 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 2.90E-261 | 910.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54635.t1 | Q9SSA5 | 82.4 | 392 | 68 | 1 | 65 | 455 | 46 | 437 | 1.3e-188 | 660.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54635.t1 | A0A072U566 | 99.3 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 2.1e-261 | 910.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene54635 | 0.866875 | 2.07E-65 | -1.69E-46 |
| MS.gene049491 | MS.gene54635 | 0.846823 | 1.70E-59 | -1.69E-46 |
| MS.gene049614 | MS.gene54635 | 0.806751 | 7.07E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene54635 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene54635 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene54635 | 0.823095 | 1.67E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene54635 | 0.818614 | 1.79E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene54635 | 0.81446 | 1.52E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene54635 | 0.824495 | 7.83E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene54635 | 0.812238 | 4.69E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene54635 | 0.82231 | 2.54E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene54635 | 0.821652 | 3.60E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene54635 | 0.877619 | 5.43E-69 | -1.69E-46 |
| MS.gene05105 | MS.gene54635 | 0.801708 | 7.93E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene54635 | 0.804926 | 1.71E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene54635 | 0.819183 | 1.33E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene54635 | 0.800886 | 1.17E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene54635 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene54635 | 0.850262 | 1.90E-60 | -1.69E-46 |
| MS.gene052340 | MS.gene54635 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene052421 | MS.gene54635 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene54635 | 0.823916 | 1.07E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene54635 | 0.806076 | 9.80E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene54635 | 0.835177 | 1.95E-56 | -1.69E-46 |
| MS.gene053813 | MS.gene54635 | 0.820966 | 5.19E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene54635 | 0.829507 | 4.95E-55 | -1.69E-46 |
| MS.gene054376 | MS.gene54635 | 0.841629 | 4.23E-58 | -1.69E-46 |
| MS.gene054802 | MS.gene54635 | 0.803498 | 3.39E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene54635 | 0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene54635 | 0.803402 | 3.55E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene54635 | 0.826485 | 2.64E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene54635 | 0.812709 | 3.70E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene54635 | 0.844147 | 9.05E-59 | -1.69E-46 |
| MS.gene055412 | MS.gene54635 | 0.814255 | 1.69E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene54635 | 0.82635 | 2.85E-54 | -1.69E-46 |
| MS.gene055647 | MS.gene54635 | 0.862273 | 5.70E-64 | -1.69E-46 |
| MS.gene055722 | MS.gene54635 | 0.823857 | 1.11E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene54635 | 0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene54635 | 0.825783 | 3.88E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene54635 | 0.815536 | 8.79E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene54635 | 0.860808 | 1.60E-63 | -1.69E-46 |
| MS.gene056897 | MS.gene54635 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene54635 | 0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene54635 | 0.802663 | 5.04E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene54635 | 0.801335 | 9.45E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene54635 | 0.84299 | 1.85E-58 | -1.69E-46 |
| MS.gene057331 | MS.gene54635 | 0.804526 | 2.07E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene54635 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene54635 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene54635 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene54635 | 0.830717 | 2.51E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene54635 | 0.852847 | 3.53E-61 | -1.69E-46 |
| MS.gene05883 | MS.gene54635 | 0.828108 | 1.08E-54 | -1.69E-46 |
| MS.gene058903 | MS.gene54635 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene54635 | 0.843634 | 1.24E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene54635 | 0.818896 | 1.54E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene54635 | 0.854114 | 1.53E-61 | -1.69E-46 |
| MS.gene059597 | MS.gene54635 | 0.845046 | 5.19E-59 | -1.69E-46 |
| MS.gene059676 | MS.gene54635 | 0.828026 | 1.13E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene54635 | 0.837002 | 6.72E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene54635 | 0.836982 | 6.80E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene54635 | 0.834305 | 3.24E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene54635 | 0.817759 | 2.79E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene54635 | 0.812662 | 3.79E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene54635 | 0.837331 | 5.54E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene54635 | 0.801551 | 8.54E-49 | -1.69E-46 |
| MS.gene060469 | MS.gene54635 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene54635 | 0.832219 | 1.07E-55 | -1.69E-46 |
| MS.gene060818 | MS.gene54635 | 0.8293 | 5.56E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene54635 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene54635 | 0.800956 | 1.13E-48 | -1.69E-46 |
| MS.gene061051 | MS.gene54635 | -0.827567 | 1.46E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene54635 | 0.838606 | 2.60E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54635.t1 | MTR_6g007607 | 99.341 | 455 | 3 | 0 | 1 | 455 | 1 | 455 | 0.0 | 933 |
| MS.gene54635.t1 | MTR_8g059435 | 27.594 | 453 | 247 | 17 | 45 | 449 | 2 | 421 | 1.45e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54635.t1 | AT3G01480 | 74.664 | 446 | 102 | 5 | 11 | 455 | 2 | 437 | 0.0 | 677 |
| MS.gene54635.t1 | AT3G01480 | 70.317 | 347 | 92 | 5 | 11 | 356 | 2 | 338 | 6.58e-175 | 494 |
| MS.gene54635.t1 | AT3G15520 | 29.306 | 447 | 261 | 18 | 33 | 449 | 35 | 456 | 6.51e-35 | 135 |
| MS.gene54635.t1 | AT3G15520 | 29.306 | 447 | 261 | 18 | 33 | 449 | 35 | 456 | 6.51e-35 | 135 |
| MS.gene54635.t1 | AT3G15520 | 29.042 | 334 | 199 | 9 | 136 | 449 | 1 | 316 | 1.02e-31 | 124 |
| MS.gene54635.t1 | AT3G15520 | 28.863 | 343 | 201 | 14 | 33 | 351 | 35 | 358 | 2.02e-22 | 98.6 |
Find 115 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGATAGTCTCAAGATTTC+TGG | 0.168643 | 6.1:-3009132 | MS.gene54635:CDS |
| GAATCCATTCAAGTTGTTTC+TGG | 0.214909 | 6.1:-3006736 | MS.gene54635:CDS |
| CATTGTTCCGAATGCATTAA+AGG | 0.221291 | 6.1:+3007037 | None:intergenic |
| AAGACTCTTAGAATGATTAT+TGG | 0.226418 | 6.1:+3010169 | None:intergenic |
| CTGGCTCTAGCCAAGTATTT+TGG | 0.227149 | 6.1:-3006882 | MS.gene54635:CDS |
| GGAGAAAAGGCACCTGTTTA+TGG | 0.232537 | 6.1:-3007342 | MS.gene54635:CDS |
| TGTTTCTGGTTTGGATAATT+TGG | 0.233188 | 6.1:-3006722 | MS.gene54635:CDS |
| GACTATACCTTTAGAAATTA+TGG | 0.255407 | 6.1:-3007370 | MS.gene54635:CDS |
| TGAAGAAGTTCTTTCTGTTT+TGG | 0.267576 | 6.1:+3008701 | None:intergenic |
| AAAACACATTCTTCCAAGTT+TGG | 0.284797 | 6.1:+3007981 | None:intergenic |
| AAACCCTCCGCAGGACCTTC+AGG | 0.285366 | 6.1:+3007420 | None:intergenic |
| AATGCCCCAGGGTCCTTAAT+TGG | 0.285824 | 6.1:+3009222 | None:intergenic |
| GATATCTGGACCGCCAATTA+AGG | 0.287928 | 6.1:-3009235 | MS.gene54635:CDS |
| GGTAAGACGTTAATTATATC+AGG | 0.289100 | 6.1:-3008833 | MS.gene54635:CDS |
| ATTATTGGAGTGAAACAAAA+TGG | 0.291163 | 6.1:+3010184 | None:intergenic |
| ACGAAATTGCCAGCAGTTAC+AGG | 0.293861 | 6.1:+3007930 | None:intergenic |
| TCCAAGCAATGCCAATATAT+TGG | 0.309798 | 6.1:-3006836 | MS.gene54635:CDS |
| CATTCAAGTTGTTTCTGGTT+TGG | 0.322297 | 6.1:-3006731 | MS.gene54635:CDS |
| GATCTGTCTGTATTGATATC+TGG | 0.326137 | 6.1:-3009249 | MS.gene54635:CDS |
| CTAGCAGTTGGGTTAATAAC+AGG | 0.328366 | 6.1:-3009327 | MS.gene54635:CDS |
| TGGTCTTCCTATTGACAATA+AGG | 0.336757 | 6.1:-3009190 | MS.gene54635:CDS |
| CTTTCAATAAAGGCAAATTT+CGG | 0.340786 | 6.1:+3008045 | None:intergenic |
| CTTTCAATAGCCAAAATACT+TGG | 0.354242 | 6.1:+3006872 | None:intergenic |
| ATATCTACCATCCAATATAT+TGG | 0.368312 | 6.1:+3006825 | None:intergenic |
| GACCTTCAGGGTCACCGGTT+TGG | 0.377802 | 6.1:+3007433 | None:intergenic |
| GCTGCTCTCCCTTTCAATAA+AGG | 0.380271 | 6.1:+3008035 | None:intergenic |
| CCTGGGGCATTGTTGAGATA+TGG | 0.383495 | 6.1:-3009210 | MS.gene54635:CDS |
| AGCTACAAGATTGCTGGTTA+AGG | 0.387705 | 6.1:-3006691 | None:intergenic |
| CTAATGGCCTTATTGTCAAT+AGG | 0.392664 | 6.1:+3009183 | None:intergenic |
| AGATTTCTTAGCAGACCTTA+AGG | 0.394051 | 6.1:-3006773 | MS.gene54635:CDS |
| TATTCCTCAGGCACTTCATA+TGG | 0.401247 | 6.1:+3008068 | None:intergenic |
| AAGCTTCCCTTTAATGCATT+CGG | 0.403374 | 6.1:-3007044 | MS.gene54635:CDS |
| GTCTTGTTTGGACAGGAGCT+TGG | 0.412150 | 6.1:-3007086 | MS.gene54635:intron |
| CGAAATTTGCCTTTATTGAA+AGG | 0.414245 | 6.1:-3008044 | MS.gene54635:CDS |
| CTATGACATCACCAACCTTA+AGG | 0.424481 | 6.1:+3006758 | None:intergenic |
| CCCTCTACCATAATTTCTAA+AGG | 0.426856 | 6.1:+3007363 | None:intergenic |
| TGTTGTTGAGTAGGAATTTG+AGG | 0.427499 | 6.1:-3006911 | MS.gene54635:intron |
| ATAACAGGGGTTCCTACGTT+GGG | 0.434642 | 6.1:-3009312 | MS.gene54635:CDS |
| GTTGAAGAAGACATGGTTGA+TGG | 0.437254 | 6.1:-3008095 | MS.gene54635:CDS |
| TTGAACTGATACTACAAGAT+AGG | 0.441548 | 6.1:-3008742 | MS.gene54635:CDS |
| CGCAGGACCTTCAGGGTCAC+CGG | 0.441660 | 6.1:+3007428 | None:intergenic |
| TCCAATATATTGGCATTGCT+TGG | 0.445537 | 6.1:+3006835 | None:intergenic |
| GAAATTTGCCTTTATTGAAA+GGG | 0.449247 | 6.1:-3008043 | MS.gene54635:CDS |
| ATTGTTCCGAATGCATTAAA+GGG | 0.449512 | 6.1:+3007038 | None:intergenic |
| AAAGAACTTCTTCAATATGT+TGG | 0.453107 | 6.1:-3008692 | MS.gene54635:CDS |
| CAAACCAGAAACAACTTGAA+TGG | 0.457875 | 6.1:+3006732 | None:intergenic |
| TTAACCAGCAATCTTGTAGC+TGG | 0.458375 | 6.1:+3006693 | None:intergenic |
| AATCCCAGCTACAAGATTGC+TGG | 0.461037 | 6.1:-3006697 | MS.gene54635:CDS |
| TATGATCAAATTGAGAATGA+TGG | 0.461499 | 6.1:+3010066 | None:intergenic |
| GGCAAATTTCGGTATTCCTC+AGG | 0.467429 | 6.1:+3008056 | None:intergenic |
| TTCTTAGCAGACCTTAAGGT+TGG | 0.474886 | 6.1:-3006769 | MS.gene54635:CDS |
| AATGGGTGTAGTTGCAAAGT+TGG | 0.480321 | 6.1:+3010202 | None:intergenic |
| GACCGCCAATTAAGGACCCT+GGG | 0.483051 | 6.1:-3009227 | MS.gene54635:CDS |
| ACCTTTAGAAATTATGGTAG+AGG | 0.487023 | 6.1:-3007364 | MS.gene54635:CDS |
| TCTAGCGTTTCTCCATAAAC+AGG | 0.488890 | 6.1:+3007330 | None:intergenic |
| AATTGAACTGCTCAATAAGC+TGG | 0.488971 | 6.1:-3008783 | MS.gene54635:CDS |
| AACCCTCCGCAGGACCTTCA+GGG | 0.495495 | 6.1:+3007421 | None:intergenic |
| AATTATGGTAGAGGGAGAAA+AGG | 0.496573 | 6.1:-3007355 | MS.gene54635:CDS |
| TGCTGGCAATTTCGTTGACT+TGG | 0.501609 | 6.1:-3007922 | MS.gene54635:CDS |
| GAACTTCTTCAATATGTTGG+AGG | 0.504185 | 6.1:-3008689 | MS.gene54635:CDS |
| GATGGGTTTGTTGTCCAAAC+CGG | 0.512990 | 6.1:-3007447 | MS.gene54635:CDS |
| ATGATCAAATTGAGAATGAT+GGG | 0.518395 | 6.1:+3010067 | None:intergenic |
| CGAAATTGCCAGCAGTTACA+GGG | 0.519698 | 6.1:+3007931 | None:intergenic |
| TATCTATAGCACTAGCAGTT+GGG | 0.520123 | 6.1:-3009338 | MS.gene54635:CDS |
| GATATCAATACAGACAGATC+AGG | 0.523570 | 6.1:+3009252 | None:intergenic |
| ATATCTATAGCACTAGCAGT+TGG | 0.528744 | 6.1:-3009339 | MS.gene54635:CDS |
| GACCCTGAAGGTCCTGCGGA+GGG | 0.528981 | 6.1:-3007423 | MS.gene54635:CDS |
| GATTAAAGACAATCCAAACT+TGG | 0.529234 | 6.1:-3007994 | MS.gene54635:CDS |
| CCATATCTCAACAATGCCCC+AGG | 0.533159 | 6.1:+3009210 | None:intergenic |
| TGACCCTGAAGGTCCTGCGG+AGG | 0.533538 | 6.1:-3007424 | MS.gene54635:CDS |
| TCTGCTAAATCCTCCAACAT+TGG | 0.533642 | 6.1:+3010127 | None:intergenic |
| CTTTAATGCATTCGGAACAA+TGG | 0.536955 | 6.1:-3007036 | MS.gene54635:CDS |
| CTGCAGTGTTGAAGAAGACA+TGG | 0.547863 | 6.1:-3008102 | MS.gene54635:intron |
| AATAACAGGGGTTCCTACGT+TGG | 0.548286 | 6.1:-3009313 | MS.gene54635:CDS |
| TAACCAGCAATCTTGTAGCT+GGG | 0.550391 | 6.1:+3006694 | None:intergenic |
| CCTTTAGAAATTATGGTAGA+GGG | 0.553718 | 6.1:-3007363 | MS.gene54635:CDS |
| TTATTGGAGTGAAACAAAAT+GGG | 0.560454 | 6.1:+3010185 | None:intergenic |
| GGACCGCCAATTAAGGACCC+TGG | 0.563001 | 6.1:-3009228 | MS.gene54635:CDS |
| AACTTCTTCAATATGTTGGA+GGG | 0.570722 | 6.1:-3008688 | MS.gene54635:intron |
| TAGGAATTTGAGGACAACTC+TGG | 0.570773 | 6.1:-3006901 | MS.gene54635:CDS |
| ACAGTAGTGACGAGGAATGA+TGG | 0.571677 | 6.1:+3010226 | None:intergenic |
| GCCCCAGGGTCCTTAATTGG+CGG | 0.573398 | 6.1:+3009225 | None:intergenic |
| TCTCAAGATTTCTGGAGTCA+AGG | 0.574299 | 6.1:-3009124 | MS.gene54635:CDS |
| CTGCTCAATAAGCTGGAAGC+TGG | 0.576065 | 6.1:-3008776 | MS.gene54635:CDS |
| GCGTCTCGAGCTCTCAAGCA+AGG | 0.585466 | 6.1:-3008854 | MS.gene54635:CDS |
| AGCAATGCCAATATATTGGA+TGG | 0.585564 | 6.1:-3006832 | MS.gene54635:CDS |
| TATAATGCCCCTGTAACTGC+TGG | 0.594718 | 6.1:-3007939 | MS.gene54635:CDS |
| AATTGAGAATGATGGGTTGG+TGG | 0.595058 | 6.1:+3010074 | None:intergenic |
| TGCATTCGGAACAATGGCGA+TGG | 0.598898 | 6.1:-3007030 | MS.gene54635:CDS |
| ACAGACAGATCAGGTAACAC+GGG | 0.602842 | 6.1:+3009261 | None:intergenic |
| TAACAGGGGTTCCTACGTTG+GGG | 0.604209 | 6.1:-3009311 | MS.gene54635:CDS |
| TACATGGAATGCAGAATGTG+AGG | 0.604719 | 6.1:-3008880 | MS.gene54635:intron |
| TACAGACAGATCAGGTAACA+CGG | 0.605629 | 6.1:+3009260 | None:intergenic |
| TAGCAGTTGGGTTAATAACA+GGG | 0.605968 | 6.1:-3009326 | MS.gene54635:CDS |
| TATAACCATCAAGAACTATG+TGG | 0.607531 | 6.1:+3007958 | None:intergenic |
| TTAGCTGCATGTGCATCGTT+AGG | 0.609497 | 6.1:+3009285 | None:intergenic |
| GTCCAAACCGGTGACCCTGA+AGG | 0.613081 | 6.1:-3007435 | MS.gene54635:CDS |
| TCAAATTGAGAATGATGGGT+TGG | 0.617762 | 6.1:+3010071 | None:intergenic |
| CTATCAGTAATATCTTCAAG+TGG | 0.619643 | 6.1:+3009147 | None:intergenic |
| GCTGAATCAAAGAAAGAACA+TGG | 0.621255 | 6.1:-3008806 | MS.gene54635:CDS |
| ACAGGAGCTTGGTCTATACA+AGG | 0.622115 | 6.1:-3007075 | MS.gene54635:intron |
| CGGTGACCCTGAAGGTCCTG+CGG | 0.622199 | 6.1:-3007427 | MS.gene54635:CDS |
| ATCCAAGTACAGAGAAAACA+AGG | 0.632911 | 6.1:-3007392 | MS.gene54635:CDS |
| GGATCAATAAAACCCTCCGC+AGG | 0.643021 | 6.1:+3007411 | None:intergenic |
| AGATAGGAATCGAGTCGCTG+TGG | 0.663706 | 6.1:-3008726 | MS.gene54635:CDS |
| AGCAGTTGGGTTAATAACAG+GGG | 0.664516 | 6.1:-3009325 | MS.gene54635:CDS |
| TCGTTAGGCAACCCCAACGT+AGG | 0.670788 | 6.1:+3009300 | None:intergenic |
| TGTTTATGGAGAAACGCTAG+AGG | 0.682191 | 6.1:-3007328 | MS.gene54635:intron |
| GAAATTGCCAGCAGTTACAG+GGG | 0.688264 | 6.1:+3007932 | None:intergenic |
| CATATCTCAACAATGCCCCA+GGG | 0.697189 | 6.1:+3009211 | None:intergenic |
| ATTTCCATATGAAGTGCCTG+AGG | 0.702011 | 6.1:-3008072 | MS.gene54635:CDS |
| GATGGCATGGAGATCCAGAG+AGG | 0.713694 | 6.1:-3007882 | MS.gene54635:intron |
| AAGTTGGAACAGTAGTGACG+AGG | 0.720637 | 6.1:+3010218 | None:intergenic |
| CAGACAGATCAGGTAACACG+GGG | 0.730804 | 6.1:+3009262 | None:intergenic |
| ACCGCCAATTAAGGACCCTG+GGG | 0.741296 | 6.1:-3009226 | MS.gene54635:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTATTTATTTATA+AGG | - | chr6.1:3008008-3008027 | MS.gene54635:CDS | 0.0% |
| !! | AGTTATAACTTATATAAAAA+AGG | + | chr6.1:3009195-3009214 | None:intergenic | 10.0% |
| !! | TAATGATATAAATGAATGTA+TGG | + | chr6.1:3009401-3009420 | None:intergenic | 15.0% |
| !! | AATAAGTAATGGTATATTAG+TGG | - | chr6.1:3007253-3007272 | MS.gene54635:intron | 20.0% |
| !! | ATAAGTAATGGTATATTAGT+GGG | - | chr6.1:3007254-3007273 | MS.gene54635:intron | 20.0% |
| !! | ATATAAAATGGAGTAAGTTA+AGG | + | chr6.1:3009999-3010018 | None:intergenic | 20.0% |
| !! | GATTAAGATACAATAAGTAA+TGG | - | chr6.1:3007242-3007261 | MS.gene54635:intron | 20.0% |
| !! | TATACTTTGTAGTTGTAAAA+TGG | - | chr6.1:3007476-3007495 | MS.gene54635:intron | 20.0% |
| !! | TATTTGTTCAAGATTTAAGA+AGG | + | chr6.1:3009974-3009993 | None:intergenic | 20.0% |
| !!! | AGAAACTGAATTATTTTACA+TGG | - | chr6.1:3008033-3008052 | MS.gene54635:CDS | 20.0% |
| ! | AAAGAACTTCTTCAATATGT+TGG | - | chr6.1:3008237-3008256 | MS.gene54635:intron | 25.0% |
| ! | AAGACTCTTAGAATGATTAT+TGG | + | chr6.1:3006763-3006782 | None:intergenic | 25.0% |
| ! | ATATCTACCATCCAATATAT+TGG | + | chr6.1:3010107-3010126 | None:intergenic | 25.0% |
| ! | ATGATCAAATTGAGAATGAT+GGG | + | chr6.1:3006865-3006884 | None:intergenic | 25.0% |
| ! | ATTATTGGAGTGAAACAAAA+TGG | + | chr6.1:3006748-3006767 | None:intergenic | 25.0% |
| ! | CTACTCAACAACATATAAAA+TGG | + | chr6.1:3010011-3010030 | None:intergenic | 25.0% |
| ! | CTCTACTAACTACAATTAAT+AGG | + | chr6.1:3007212-3007231 | None:intergenic | 25.0% |
| ! | CTTTCAATAAAGGCAAATTT+CGG | + | chr6.1:3008887-3008906 | None:intergenic | 25.0% |
| ! | GAAATTTGCCTTTATTGAAA+GGG | - | chr6.1:3008886-3008905 | MS.gene54635:intron | 25.0% |
| ! | GTGACTTGAATCATATATAA+AGG | + | chr6.1:3007508-3007527 | None:intergenic | 25.0% |
| ! | TAAGATGTTAGTTATCCTTA+CGG | - | chr6.1:3007394-3007413 | MS.gene54635:CDS | 25.0% |
| ! | TAAGTAATGGTATATTAGTG+GGG | - | chr6.1:3007255-3007274 | MS.gene54635:intron | 25.0% |
| ! | TATGATCAAATTGAGAATGA+TGG | + | chr6.1:3006866-3006885 | None:intergenic | 25.0% |
| ! | TTATTGGAGTGAAACAAAAT+GGG | + | chr6.1:3006747-3006766 | None:intergenic | 25.0% |
| !! | ACGCTTATTGTGTTAAATTT+TGG | - | chr6.1:3007529-3007548 | MS.gene54635:intron | 25.0% |
| !! | ATTGAGATTTTAGATGTAGT+TGG | + | chr6.1:3008562-3008581 | None:intergenic | 25.0% |
| !! | CATTTTATATGTTGTTGAGT+AGG | - | chr6.1:3010009-3010028 | MS.gene54635:intron | 25.0% |
| !! | GACTATACCTTTAGAAATTA+TGG | - | chr6.1:3009559-3009578 | MS.gene54635:intron | 25.0% |
| !!! | CTTTATTTTTCCGAAGAAAT+AGG | - | chr6.1:3008348-3008367 | MS.gene54635:intron | 25.0% |
| !!! | TCAAAATGAGTGTTTTTGAT+CGG | + | chr6.1:3008628-3008647 | None:intergenic | 25.0% |
| AAAACACATTCTTCCAAGTT+TGG | + | chr6.1:3008951-3008970 | None:intergenic | 30.0% | |
| AACTTCTTCAATATGTTGGA+GGG | - | chr6.1:3008241-3008260 | MS.gene54635:intron | 30.0% | |
| AATCCAAATAGGTCCTTAAT+AGG | - | chr6.1:3009322-3009341 | MS.gene54635:CDS | 30.0% | |
| AGATGTTTAGTCAAGGTTTA+GGG | + | chr6.1:3008471-3008490 | None:intergenic | 30.0% | |
| AGCTTACATAAGCACTTATA+CGG | + | chr6.1:3009144-3009163 | None:intergenic | 30.0% | |
| AGTTTGATCTTGTAACTTCA+AGG | - | chr6.1:3007919-3007938 | MS.gene54635:CDS | 30.0% | |
| ATAAACCACAGTACCTATTA+AGG | + | chr6.1:3009338-3009357 | None:intergenic | 30.0% | |
| ATATCAGTCTACAAGTCATA+GGG | + | chr6.1:3009657-3009676 | None:intergenic | 30.0% | |
| ATGAATGTATGGAATCTTTC+AGG | + | chr6.1:3009390-3009409 | None:intergenic | 30.0% | |
| ATTGTTCCGAATGCATTAAA+GGG | + | chr6.1:3009894-3009913 | None:intergenic | 30.0% | |
| CAAACCAACTACAACTATAA+GGG | + | chr6.1:3009121-3009140 | None:intergenic | 30.0% | |
| CCAACATTGGTATTCAAAAA+TGG | + | chr6.1:3006792-3006811 | None:intergenic | 30.0% | |
| CGAAATTTGCCTTTATTGAA+AGG | - | chr6.1:3008885-3008904 | MS.gene54635:intron | 30.0% | |
| CTATCAGTAATATCTTCAAG+TGG | + | chr6.1:3007785-3007804 | None:intergenic | 30.0% | |
| CTTTCAATAGCCAAAATACT+TGG | + | chr6.1:3010060-3010079 | None:intergenic | 30.0% | |
| GATTAAAGACAATCCAAACT+TGG | - | chr6.1:3008935-3008954 | MS.gene54635:intron | 30.0% | |
| GGTAAGACGTTAATTATATC+AGG | - | chr6.1:3008096-3008115 | MS.gene54635:CDS | 30.0% | |
| GTAAAAGATCTGATCTTTAG+AGG | - | chr6.1:3009069-3009088 | MS.gene54635:intron | 30.0% | |
| TAAACATCTACCTAGTCAAT+GGG | - | chr6.1:3008482-3008501 | MS.gene54635:intron | 30.0% | |
| TAGATGTTTAGTCAAGGTTT+AGG | + | chr6.1:3008472-3008491 | None:intergenic | 30.0% | |
| TAGTTAGTAGAGTTGTTAGT+TGG | - | chr6.1:3007220-3007239 | MS.gene54635:intron | 30.0% | |
| TATAACCATCAAGAACTATG+TGG | + | chr6.1:3008974-3008993 | None:intergenic | 30.0% | |
| TATTAAGGACCTATTTGGAT+TGG | + | chr6.1:3009323-3009342 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATCCAAAT+AGG | - | chr6.1:3009311-3009330 | MS.gene54635:CDS | 30.0% | |
| TGAGAAATGTTTATCCCTAA+CGG | + | chr6.1:3007960-3007979 | None:intergenic | 30.0% | |
| TTGAACTGATACTACAAGAT+AGG | - | chr6.1:3008187-3008206 | MS.gene54635:intron | 30.0% | |
| TTTCTTCTGATCATACAGAA+AGG | + | chr6.1:3009739-3009758 | None:intergenic | 30.0% | |
| ! | ACCTTTAGAAATTATGGTAG+AGG | - | chr6.1:3009565-3009584 | MS.gene54635:intron | 30.0% |
| ! | CCTTTAGAAATTATGGTAGA+GGG | - | chr6.1:3009566-3009585 | MS.gene54635:intron | 30.0% |
| ! | TGAAGAAGTTCTTTCTGTTT+TGG | + | chr6.1:3008231-3008250 | None:intergenic | 30.0% |
| ! | TTTTTGAATACCAATGTTGG+AGG | - | chr6.1:3006792-3006811 | MS.gene54635:CDS | 30.0% |
| !! | CCATTTTTGAATACCAATGT+TGG | - | chr6.1:3006789-3006808 | MS.gene54635:CDS | 30.0% |
| !! | TGTTAAATTTTGGTGCAGAA+AGG | - | chr6.1:3007539-3007558 | MS.gene54635:intron | 30.0% |
| !! | TGTTTCTGGTTTGGATAATT+TGG | - | chr6.1:3010207-3010226 | MS.gene54635:CDS | 30.0% |
| !! | TTGACAACATGATTTGTTTG+TGG | - | chr6.1:3008644-3008663 | MS.gene54635:intron | 30.0% |
| !!! | GTTTTCATTTTTTGTTGCAG+CGG | - | chr6.1:3009460-3009479 | MS.gene54635:intron | 30.0% |
| AAGCTTCCCTTTAATGCATT+CGG | - | chr6.1:3009885-3009904 | MS.gene54635:intron | 35.0% | |
| AATCTTCCATTGTAAGAAGG+AGG | + | chr6.1:3008711-3008730 | None:intergenic | 35.0% | |
| AATTATGGTAGAGGGAGAAA+AGG | - | chr6.1:3009574-3009593 | MS.gene54635:intron | 35.0% | |
| AATTGAACTGCTCAATAAGC+TGG | - | chr6.1:3008146-3008165 | MS.gene54635:intron | 35.0% | |
| ACTAGGTAGATGTTTAGTCA+AGG | + | chr6.1:3008478-3008497 | None:intergenic | 35.0% | |
| ACTGATAGTCTCAAGATTTC+TGG | - | chr6.1:3007797-3007816 | MS.gene54635:intron | 35.0% | |
| AGATTTCTTAGCAGACCTTA+AGG | - | chr6.1:3010156-3010175 | MS.gene54635:CDS | 35.0% | |
| AGCAATGCCAATATATTGGA+TGG | - | chr6.1:3010097-3010116 | MS.gene54635:CDS | 35.0% | |
| AGCATTAGCGTAAACCTATT+AGG | - | chr6.1:3008439-3008458 | MS.gene54635:intron | 35.0% | |
| ATAGGGTTATGTGATCTTCA+TGG | + | chr6.1:3009640-3009659 | None:intergenic | 35.0% | |
| ATATCTATAGCACTAGCAGT+TGG | - | chr6.1:3007590-3007609 | MS.gene54635:intron | 35.0% | |
| ATCCAAGTACAGAGAAAACA+AGG | - | chr6.1:3009537-3009556 | MS.gene54635:intron | 35.0% | |
| ATTGACTAAACCTGATCACT+AGG | + | chr6.1:3008602-3008621 | None:intergenic | 35.0% | |
| ATTGCCCTTATAGTTGTAGT+TGG | - | chr6.1:3009114-3009133 | MS.gene54635:CDS | 35.0% | |
| CAAACCAGAAACAACTTGAA+TGG | + | chr6.1:3010200-3010219 | None:intergenic | 35.0% | |
| CAAACGAAATGTAAAACTGC+TGG | + | chr6.1:3007871-3007890 | None:intergenic | 35.0% | |
| CATTGTTCCGAATGCATTAA+AGG | + | chr6.1:3009895-3009914 | None:intergenic | 35.0% | |
| CCCTCTACCATAATTTCTAA+AGG | + | chr6.1:3009569-3009588 | None:intergenic | 35.0% | |
| CTAAACATCTACCTAGTCAA+TGG | - | chr6.1:3008481-3008500 | MS.gene54635:intron | 35.0% | |
| CTCAATCTTCCATTGTAAGA+AGG | + | chr6.1:3008714-3008733 | None:intergenic | 35.0% | |
| CTTCTTACAATGGAAGATTG+AGG | - | chr6.1:3008712-3008731 | MS.gene54635:CDS | 35.0% | |
| CTTTAATGCATTCGGAACAA+TGG | - | chr6.1:3009893-3009912 | MS.gene54635:intron | 35.0% | |
| GAAAATTGTCTATGTTTCCC+TGG | - | chr6.1:3007277-3007296 | MS.gene54635:intron | 35.0% | |
| GAACTTCTTCAATATGTTGG+AGG | - | chr6.1:3008240-3008259 | MS.gene54635:intron | 35.0% | |
| GAGAAATGTTTATCCCTAAC+GGG | + | chr6.1:3007959-3007978 | None:intergenic | 35.0% | |
| GATATCAATACAGACAGATC+AGG | + | chr6.1:3007680-3007699 | None:intergenic | 35.0% | |
| GATATCAGTCTACAAGTCAT+AGG | + | chr6.1:3009658-3009677 | None:intergenic | 35.0% | |
| GCAAACCAACTACAACTATA+AGG | + | chr6.1:3009122-3009141 | None:intergenic | 35.0% | |
| GCTGAATCAAAGAAAGAACA+TGG | - | chr6.1:3008123-3008142 | MS.gene54635:intron | 35.0% | |
| GCTTACAATGCATTCAAATC+TGG | + | chr6.1:3007093-3007112 | None:intergenic | 35.0% | |
| GTACCTATTAAGGACCTATT+TGG | + | chr6.1:3009328-3009347 | None:intergenic | 35.0% | |
| TAGCAGTTGGGTTAATAACA+GGG | - | chr6.1:3007603-3007622 | MS.gene54635:intron | 35.0% | |
| TATCTATAGCACTAGCAGTT+GGG | - | chr6.1:3007591-3007610 | MS.gene54635:intron | 35.0% | |
| TCCAAGCAATGCCAATATAT+TGG | - | chr6.1:3010093-3010112 | MS.gene54635:CDS | 35.0% | |
| TCCAATATATTGGCATTGCT+TGG | + | chr6.1:3010097-3010116 | None:intergenic | 35.0% | |
| TGGTCTTCCTATTGACAATA+AGG | - | chr6.1:3007739-3007758 | MS.gene54635:intron | 35.0% | |
| TGTTCTCAGTGAGAATAAGA+AGG | - | chr6.1:3008325-3008344 | MS.gene54635:intron | 35.0% | |
| TGTTGTTGAGTAGGAATTTG+AGG | - | chr6.1:3010018-3010037 | MS.gene54635:intron | 35.0% | |
| ! | AAAACCGTCTCCTATTTCTT+CGG | + | chr6.1:3008361-3008380 | None:intergenic | 35.0% |
| ! | AATTGTCAGTTTAGAATGCC+AGG | + | chr6.1:3007298-3007317 | None:intergenic | 35.0% |
| ! | ATTGTCAGTTTAGAATGCCA+GGG | + | chr6.1:3007297-3007316 | None:intergenic | 35.0% |
| ! | GACTTTGCAACTTTAAGAGA+CGG | - | chr6.1:3007445-3007464 | MS.gene54635:CDS | 35.0% |
| ! | GATCTGTCTGTATTGATATC+TGG | - | chr6.1:3007680-3007699 | MS.gene54635:intron | 35.0% |
| ! | GTAGAAAGACACTTTTACGA+TGG | - | chr6.1:3009029-3009048 | MS.gene54635:intron | 35.0% |
| ! | GTTTTCCACATAGTTCTTGA+TGG | - | chr6.1:3008966-3008985 | MS.gene54635:intron | 35.0% |
| ! | TGGTTTTTGCACTTCTCTAA+TGG | + | chr6.1:3007765-3007784 | None:intergenic | 35.0% |
| ! | TTTGAACTCTCTGTCTTGTT+TGG | - | chr6.1:3009831-3009850 | MS.gene54635:intron | 35.0% |
| ! | TTTTCCGAAGAAATAGGAGA+CGG | - | chr6.1:3008354-3008373 | MS.gene54635:intron | 35.0% |
| !! | AGGAGGATCGATGTTTTTAT+CGG | + | chr6.1:3008694-3008713 | None:intergenic | 35.0% |
| !! | CATTCAAGTTGTTTCTGGTT+TGG | - | chr6.1:3010198-3010217 | MS.gene54635:CDS | 35.0% |
| !! | CTAATGGCCTTATTGTCAAT+AGG | + | chr6.1:3007749-3007768 | None:intergenic | 35.0% |
| !! | GAATCCATTCAAGTTGTTTC+TGG | - | chr6.1:3010193-3010212 | MS.gene54635:CDS | 35.0% |
| !! | TCAAATTGAGAATGATGGGT+TGG | + | chr6.1:3006861-3006880 | None:intergenic | 35.0% |
| !! | TTTCAGGTCATTTTCTGCAT+TGG | + | chr6.1:3009374-3009393 | None:intergenic | 35.0% |
| !!! | GATGGTAGATATGCTGTTTT+TGG | - | chr6.1:3010115-3010134 | MS.gene54635:CDS | 35.0% |
| AATGGGTGTAGTTGCAAAGT+TGG | + | chr6.1:3006730-3006749 | None:intergenic | 40.0% | |
| ACATTTCGTTTGCGTACATG+AGG | - | chr6.1:3007879-3007898 | MS.gene54635:intron | 40.0% | |
| AGAACATCGATGGAAGGATA+GGG | + | chr6.1:3008311-3008330 | None:intergenic | 40.0% | |
| AGCAGTTGGGTTAATAACAG+GGG | - | chr6.1:3007604-3007623 | MS.gene54635:intron | 40.0% | |
| ATCGATCCTCCTTCTTACAA+TGG | - | chr6.1:3008702-3008721 | MS.gene54635:CDS | 40.0% | |
| ATTCTCACTGAGAACATCGA+TGG | + | chr6.1:3008321-3008340 | None:intergenic | 40.0% | |
| CAACTAGTGATCCAGTGATT+CGG | + | chr6.1:3008520-3008539 | None:intergenic | 40.0% | |
| CTAGCAGTTGGGTTAATAAC+AGG | - | chr6.1:3007602-3007621 | MS.gene54635:intron | 40.0% | |
| CTATGACATCACCAACCTTA+AGG | + | chr6.1:3010174-3010193 | None:intergenic | 40.0% | |
| CTTACAATGGAAGATTGAGG+AGG | - | chr6.1:3008715-3008734 | MS.gene54635:CDS | 40.0% | |
| GGTATTTATGCGGTTTATGC+AGG | + | chr6.1:3008290-3008309 | None:intergenic | 40.0% | |
| GTTGAAGAAGACATGGTTGA+TGG | - | chr6.1:3008834-3008853 | MS.gene54635:CDS | 40.0% | |
| TAACCAGCAATCTTGTAGCT+GGG | + | chr6.1:3010238-3010257 | None:intergenic | 40.0% | |
| TACAGACAGATCAGGTAACA+CGG | + | chr6.1:3007672-3007691 | None:intergenic | 40.0% | |
| TACATGGAATGCAGAATGTG+AGG | - | chr6.1:3008049-3008068 | MS.gene54635:CDS | 40.0% | |
| TAGGAATTTGAGGACAACTC+TGG | - | chr6.1:3010028-3010047 | MS.gene54635:intron | 40.0% | |
| TATTCCTCAGGCACTTCATA+TGG | + | chr6.1:3008864-3008883 | None:intergenic | 40.0% | |
| TCTAGCGTTTCTCCATAAAC+AGG | + | chr6.1:3009602-3009621 | None:intergenic | 40.0% | |
| TCTGCTAAATCCTCCAACAT+TGG | + | chr6.1:3006805-3006824 | None:intergenic | 40.0% | |
| TGAGTTAAGCTAACACCGTA+AGG | + | chr6.1:3007412-3007431 | None:intergenic | 40.0% | |
| TGTTTATGGAGAAACGCTAG+AGG | - | chr6.1:3009601-3009620 | MS.gene54635:intron | 40.0% | |
| TTAACCAGCAATCTTGTAGC+TGG | + | chr6.1:3010239-3010258 | None:intergenic | 40.0% | |
| TTACTATGCACCTAGTGATC+AGG | - | chr6.1:3008589-3008608 | MS.gene54635:intron | 40.0% | |
| TTAGTCAAGGTTTAGGGACT+TGG | + | chr6.1:3008465-3008484 | None:intergenic | 40.0% | |
| TTCTTAGCAGACCTTAAGGT+TGG | - | chr6.1:3010160-3010179 | MS.gene54635:CDS | 40.0% | |
| ! | AAGACACTTTTACGATGGCA+TGG | - | chr6.1:3009034-3009053 | MS.gene54635:intron | 40.0% |
| ! | ATTTCCATATGAAGTGCCTG+AGG | - | chr6.1:3008857-3008876 | MS.gene54635:CDS | 40.0% |
| ! | CAGAAAGGTGCGAAAAAGAT+TGG | + | chr6.1:3009724-3009743 | None:intergenic | 40.0% |
| ! | GATCAGATCTTTTACCTCTC+TGG | + | chr6.1:3009064-3009083 | None:intergenic | 40.0% |
| ! | GGAAGGATAGGGTATTTATG+CGG | + | chr6.1:3008300-3008319 | None:intergenic | 40.0% |
| ! | TAGGTCCTTAATAGGTACTG+TGG | - | chr6.1:3009330-3009349 | MS.gene54635:CDS | 40.0% |
| !! | AATTGAGAATGATGGGTTGG+TGG | + | chr6.1:3006858-3006877 | None:intergenic | 40.0% |
| !! | CATGATTTGTTTGTGGTCTC+TGG | - | chr6.1:3008651-3008670 | MS.gene54635:intron | 40.0% |
| !! | TCTCAAGATTTCTGGAGTCA+AGG | - | chr6.1:3007805-3007824 | MS.gene54635:intron | 40.0% |
| !!! | CATTTTTTGTTGCAGCGGAT+GGG | - | chr6.1:3009465-3009484 | MS.gene54635:intron | 40.0% |
| !!! | GTCCTTGTTTTCTCTGTACT+TGG | + | chr6.1:3009542-3009561 | None:intergenic | 40.0% |
| !!! | TCATTTTTTGTTGCAGCGGA+TGG | - | chr6.1:3009464-3009483 | MS.gene54635:intron | 40.0% |
| AACCGAGTTCAAATCCCGTT+AGG | - | chr6.1:3007942-3007961 | MS.gene54635:CDS | 45.0% | |
| AAGTTGGAACAGTAGTGACG+AGG | + | chr6.1:3006714-3006733 | None:intergenic | 45.0% | |
| AATAACAGGGGTTCCTACGT+TGG | - | chr6.1:3007616-3007635 | MS.gene54635:intron | 45.0% | |
| AATCCCAGCTACAAGATTGC+TGG | - | chr6.1:3010232-3010251 | MS.gene54635:CDS | 45.0% | |
| ACAGACAGATCAGGTAACAC+GGG | + | chr6.1:3007671-3007690 | None:intergenic | 45.0% | |
| ACAGGAGCTTGGTCTATACA+AGG | - | chr6.1:3009854-3009873 | MS.gene54635:intron | 45.0% | |
| ACAGTAGTGACGAGGAATGA+TGG | + | chr6.1:3006706-3006725 | None:intergenic | 45.0% | |
| ACCGAGTTCAAATCCCGTTA+GGG | - | chr6.1:3007943-3007962 | MS.gene54635:CDS | 45.0% | |
| ACGAAATTGCCAGCAGTTAC+AGG | + | chr6.1:3009002-3009021 | None:intergenic | 45.0% | |
| ATAACAGGGGTTCCTACGTT+GGG | - | chr6.1:3007617-3007636 | MS.gene54635:intron | 45.0% | |
| ATGGAAGATTGAGGAGGACT+TGG | - | chr6.1:3008721-3008740 | MS.gene54635:CDS | 45.0% | |
| CATATCTCAACAATGCCCCA+GGG | + | chr6.1:3007721-3007740 | None:intergenic | 45.0% | |
| CGAAATTGCCAGCAGTTACA+GGG | + | chr6.1:3009001-3009020 | None:intergenic | 45.0% | |
| GAAATTGCCAGCAGTTACAG+GGG | + | chr6.1:3009000-3009019 | None:intergenic | 45.0% | |
| GAGAACATCGATGGAAGGAT+AGG | + | chr6.1:3008312-3008331 | None:intergenic | 45.0% | |
| GATATCTGGACCGCCAATTA+AGG | - | chr6.1:3007694-3007713 | MS.gene54635:intron | 45.0% | |
| GCTGCTCTCCCTTTCAATAA+AGG | + | chr6.1:3008897-3008916 | None:intergenic | 45.0% | |
| GGCAAATTTCGGTATTCCTC+AGG | + | chr6.1:3008876-3008895 | None:intergenic | 45.0% | |
| GTTTAGGGACTTGGCCTAAT+AGG | + | chr6.1:3008456-3008475 | None:intergenic | 45.0% | |
| TATAATGCCCCTGTAACTGC+TGG | - | chr6.1:3008990-3009009 | MS.gene54635:intron | 45.0% | |
| TCACTGAGAACATCGATGGA+AGG | + | chr6.1:3008317-3008336 | None:intergenic | 45.0% | |
| TCCCTAACGGGATTTGAACT+CGG | + | chr6.1:3007947-3007966 | None:intergenic | 45.0% | |
| TCTCAGCTGCAGTCAATGAA+AGG | + | chr6.1:3008786-3008805 | None:intergenic | 45.0% | |
| TTAGCTGCATGTGCATCGTT+AGG | + | chr6.1:3007647-3007666 | None:intergenic | 45.0% | |
| ! | ACGGTGTTAGCTTAACTCAG+TGG | - | chr6.1:3007413-3007432 | MS.gene54635:CDS | 45.0% |
| ! | CTGCAGTGTTGAAGAAGACA+TGG | - | chr6.1:3008827-3008846 | MS.gene54635:CDS | 45.0% |
| ! | TGCTGGCAATTTCGTTGACT+TGG | - | chr6.1:3009007-3009026 | MS.gene54635:intron | 45.0% |
| !! | ACTCTCTGTCTTGTTTGGAC+AGG | - | chr6.1:3009836-3009855 | MS.gene54635:intron | 45.0% |
| !! | GATGGGTTTGTTGTCCAAAC+CGG | - | chr6.1:3009482-3009501 | MS.gene54635:intron | 45.0% |
| !! | GGAGAAAAGGCACCTGTTTA+TGG | - | chr6.1:3009587-3009606 | MS.gene54635:intron | 45.0% |
| !!! | CTGGCTCTAGCCAAGTATTT+TGG | - | chr6.1:3010047-3010066 | MS.gene54635:intron | 45.0% |
| AATGCCCCAGGGTCCTTAAT+TGG | + | chr6.1:3007710-3007729 | None:intergenic | 50.0% | |
| ACTGCAGCTGAGATGTTCCT+GGG | - | chr6.1:3008793-3008812 | MS.gene54635:CDS | 50.0% | |
| AGATAGGAATCGAGTCGCTG+TGG | - | chr6.1:3008203-3008222 | MS.gene54635:intron | 50.0% | |
| ATCTACCTAGTCAATGGGCG+AGG | - | chr6.1:3008487-3008506 | MS.gene54635:intron | 50.0% | |
| CAGACAGATCAGGTAACACG+GGG | + | chr6.1:3007670-3007689 | None:intergenic | 50.0% | |
| CCATATCTCAACAATGCCCC+AGG | + | chr6.1:3007722-3007741 | None:intergenic | 50.0% | |
| CTGCTCAATAAGCTGGAAGC+TGG | - | chr6.1:3008153-3008172 | MS.gene54635:intron | 50.0% | |
| GGATCAATAAAACCCTCCGC+AGG | + | chr6.1:3009521-3009540 | None:intergenic | 50.0% | |
| TAACAGGGGTTCCTACGTTG+GGG | - | chr6.1:3007618-3007637 | MS.gene54635:intron | 50.0% | |
| TAGTCAATGGGCGAGGCTAT+TGG | - | chr6.1:3008494-3008513 | MS.gene54635:intron | 50.0% | |
| TGCATTCGGAACAATGGCGA+TGG | - | chr6.1:3009899-3009918 | MS.gene54635:intron | 50.0% | |
| ! | AATAGCCTCGCCCATTGACT+AGG | + | chr6.1:3008495-3008514 | None:intergenic | 50.0% |
| !! | CCTGGGGCATTGTTGAGATA+TGG | - | chr6.1:3007719-3007738 | MS.gene54635:intron | 50.0% |
| !! | GTCTTGTTTGGACAGGAGCT+TGG | - | chr6.1:3009843-3009862 | MS.gene54635:intron | 50.0% |
| ACCGCCAATTAAGGACCCTG+GGG | - | chr6.1:3007703-3007722 | MS.gene54635:intron | 55.0% | |
| CTGCAGAAATGCAATGCCCC+AGG | + | chr6.1:3008813-3008832 | None:intergenic | 55.0% | |
| CTGCAGCTGAGATGTTCCTG+GGG | - | chr6.1:3008794-3008813 | MS.gene54635:CDS | 55.0% | |
| GACCGCCAATTAAGGACCCT+GGG | - | chr6.1:3007702-3007721 | MS.gene54635:intron | 55.0% | |
| GACTGCAGCTGAGATGTTCC+TGG | - | chr6.1:3008792-3008811 | MS.gene54635:CDS | 55.0% | |
| GAGGCTATTGGCCGAATCAC+TGG | - | chr6.1:3008506-3008525 | MS.gene54635:intron | 55.0% | |
| GATGGCATGGAGATCCAGAG+AGG | - | chr6.1:3009047-3009066 | MS.gene54635:intron | 55.0% | |
| TCGTTAGGCAACCCCAACGT+AGG | + | chr6.1:3007632-3007651 | None:intergenic | 55.0% | |
| AAACCCTCCGCAGGACCTTC+AGG | + | chr6.1:3009512-3009531 | None:intergenic | 60.0% | |
| AACCCTCCGCAGGACCTTCA+GGG | + | chr6.1:3009511-3009530 | None:intergenic | 60.0% | |
| GCCCCAGGGTCCTTAATTGG+CGG | + | chr6.1:3007707-3007726 | None:intergenic | 60.0% | |
| GCGTCTCGAGCTCTCAAGCA+AGG | - | chr6.1:3008075-3008094 | MS.gene54635:CDS | 60.0% | |
| GGACCGCCAATTAAGGACCC+TGG | - | chr6.1:3007701-3007720 | MS.gene54635:intron | 60.0% | |
| GTCCAAACCGGTGACCCTGA+AGG | - | chr6.1:3009494-3009513 | MS.gene54635:intron | 60.0% | |
| ! | GACCTTCAGGGTCACCGGTT+TGG | + | chr6.1:3009499-3009518 | None:intergenic | 60.0% |
| CGCAGGACCTTCAGGGTCAC+CGG | + | chr6.1:3009504-3009523 | None:intergenic | 65.0% | |
| CGGTGACCCTGAAGGTCCTG+CGG | - | chr6.1:3009502-3009521 | MS.gene54635:intron | 65.0% | |
| GACCCTGAAGGTCCTGCGGA+GGG | - | chr6.1:3009506-3009525 | MS.gene54635:intron | 65.0% | |
| TGACCCTGAAGGTCCTGCGG+AGG | - | chr6.1:3009505-3009524 | MS.gene54635:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3006693 | 3010258 | 3006693 | ID=MS.gene54635 |
| chr6.1 | mRNA | 3006693 | 3010258 | 3006693 | ID=MS.gene54635.t1;Parent=MS.gene54635 |
| chr6.1 | exon | 3010061 | 3010258 | 3010061 | ID=MS.gene54635.t1.exon1;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3010061 | 3010258 | 3010061 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3009104 | 3009394 | 3009104 | ID=MS.gene54635.t1.exon2;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3009104 | 3009394 | 3009104 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3008689 | 3008888 | 3008689 | ID=MS.gene54635.t1.exon3;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3008689 | 3008888 | 3008689 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3007883 | 3008118 | 3007883 | ID=MS.gene54635.t1.exon4;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3007883 | 3008118 | 3007883 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3007329 | 3007471 | 3007329 | ID=MS.gene54635.t1.exon5;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3007329 | 3007471 | 3007329 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3007022 | 3007093 | 3007022 | ID=MS.gene54635.t1.exon6;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3007022 | 3007093 | 3007022 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| chr6.1 | exon | 3006693 | 3006920 | 3006693 | ID=MS.gene54635.t1.exon7;Parent=MS.gene54635.t1 |
| chr6.1 | CDS | 3006693 | 3006920 | 3006693 | ID=cds.MS.gene54635.t1;Parent=MS.gene54635.t1 |
| Gene Sequence |
| Protein sequence |
