AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037437

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037437.t1 MTR_4g415300 98.270 289 5 0 1 289 1 289 0.0 584
MS.gene037437.t1 MTR_8g098375 82.986 288 45 2 3 289 2 286 3.70e-178 493
MS.gene037437.t1 MTR_5g010150 84.028 288 42 2 3 289 2 286 1.07e-177 491
MS.gene037437.t1 MTR_5g082070 80.000 290 56 2 1 289 1 289 1.12e-172 479
MS.gene037437.t1 MTR_3g070210 80.345 290 55 2 1 289 1 289 2.65e-172 478
MS.gene037437.t1 MTR_4g415300 97.653 213 5 0 1 213 1 213 1.46e-154 431
MS.gene037437.t1 MTR_3g070210 79.087 263 53 2 1 262 1 262 3.36e-151 424
MS.gene037437.t1 MTR_7g101190 73.541 257 62 1 33 283 16 272 3.37e-138 392
MS.gene037437.t1 MTR_2g094270 67.647 272 79 2 26 288 8 279 2.81e-134 382
MS.gene037437.t1 MTR_3g118010 68.992 258 80 0 31 288 12 269 9.62e-132 375
MS.gene037437.t1 MTR_4g059390 66.171 269 85 1 26 288 9 277 1.06e-130 372
MS.gene037437.t1 MTR_8g098375 75.758 231 50 3 3 230 2 229 1.07e-123 353
MS.gene037437.t1 MTR_5g010150 81.604 212 35 2 3 213 2 210 1.37e-121 347
MS.gene037437.t1 MTR_2g094270 68.724 243 67 2 26 259 8 250 3.13e-119 343
MS.gene037437.t1 MTR_3g070210 77.103 214 47 2 1 213 1 213 8.73e-118 337
MS.gene037437.t1 MTR_1g095070 77.717 184 41 0 100 283 23 206 3.99e-105 305
MS.gene037437.t1 MTR_1g095070 78.125 160 35 0 100 259 23 182 1.97e-89 264
MS.gene037437.t1 MTR_4g059390 64.433 194 63 1 26 213 9 202 9.09e-86 255
MS.gene037437.t1 MTR_6g069040 38.889 234 128 6 56 285 21 243 3.82e-32 119
MS.gene037437.t1 MTR_1g077540 35.745 235 125 8 56 281 21 238 2.50e-31 117
MS.gene037437.t1 MTR_1g115405 37.917 240 130 8 48 281 13 239 3.53e-31 117
MS.gene037437.t1 MTR_7g103030 35.526 228 132 6 56 280 21 236 7.19e-31 116
MS.gene037437.t1 MTR_2g101370 34.764 233 138 5 51 280 15 236 2.46e-29 112
MS.gene037437.t1 MTR_4g063090 34.389 221 131 5 61 278 26 235 9.40e-28 108
MS.gene037437.t1 MTR_1g006490 34.649 228 127 7 56 278 19 229 2.47e-27 107
MS.gene037437.t1 MTR_8g013680 35.043 234 132 7 51 277 12 232 4.57e-27 106
MS.gene037437.t1 MTR_1g006590 35.652 230 122 9 56 278 19 229 1.98e-26 104
MS.gene037437.t1 MTR_7g023350 35.776 232 130 7 56 281 21 239 2.07e-26 104
MS.gene037437.t1 MTR_5g012810 34.667 225 132 5 56 277 19 231 1.43e-25 102
MS.gene037437.t1 MTR_2g060360 32.787 244 119 9 56 281 19 235 6.52e-21 89.7
MS.gene037437.t1 MTR_8g087710 28.409 264 164 8 26 280 1 248 1.23e-19 86.7
MS.gene037437.t1 MTR_5g063930 25.591 254 160 6 25 277 19 244 8.51e-19 84.3
MS.gene037437.t1 MTR_7g010650 30.085 236 144 9 54 287 35 251 1.79e-18 83.6
MS.gene037437.t1 MTR_2g017660 28.000 250 160 7 26 270 4 238 3.42e-18 82.8
MS.gene037437.t1 MTR_4g075590 29.032 248 154 9 48 282 29 267 5.65e-18 82.8
MS.gene037437.t1 MTR_4g075570 30.270 185 109 7 103 272 95 274 1.94e-17 81.3
MS.gene037437.t1 MTR_2g017590 31.604 212 130 6 59 270 39 235 3.11e-17 80.1
MS.gene037437.t1 MTR_8g087720 27.632 228 150 6 53 280 35 247 4.61e-17 79.3
MS.gene037437.t1 MTR_2g017620 31.336 217 134 6 54 270 36 237 5.48e-17 79.3
MS.gene037437.t1 MTR_2g017620 31.336 217 134 6 54 270 22 223 6.11e-17 79.0
MS.gene037437.t1 MTR_5g079570 25.773 291 179 9 1 289 1 256 1.28e-16 78.2
MS.gene037437.t1 MTR_4g084880 26.577 222 150 5 59 280 38 246 2.55e-16 77.4
MS.gene037437.t1 MTR_4g006730 28.302 212 134 6 60 270 79 273 1.24e-15 75.9
MS.gene037437.t1 MTR_2g104940 30.516 213 128 8 60 270 84 278 1.93e-15 75.5
MS.gene037437.t1 MTR_2g017610 29.245 212 135 5 59 270 41 237 7.20e-15 73.6
MS.gene037437.t1 MTR_3g008920 27.803 223 137 7 60 278 30 232 1.37e-14 72.4
MS.gene037437.t1 MTR_2g017570 28.774 212 136 5 59 270 41 237 2.17e-14 72.0
MS.gene037437.t1 MTR_1g097840 28.889 225 141 8 60 282 78 285 2.37e-13 69.3
MS.gene037437.t1 MTR_4g006630 29.609 179 111 5 93 270 22 186 7.95e-13 66.6
MS.gene037437.t1 MTR_4g006730 29.609 179 111 5 93 270 22 186 8.18e-13 66.6
MS.gene037437.t1 MTR_2g017620 31.928 166 101 4 105 270 3 156 1.45e-12 65.5
MS.gene037437.t1 MTR_1g070385 26.180 233 136 7 53 275 59 265 1.29e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037437.t1 AT4G00430 85.121 289 40 1 1 289 1 286 0.0 508
MS.gene037437.t1 AT2G45960 83.737 289 43 1 1 289 1 285 0.0 502
MS.gene037437.t1 AT1G01620 83.737 289 43 1 1 289 1 285 4.03e-175 485
MS.gene037437.t1 AT3G61430 83.045 289 45 1 1 289 1 285 8.49e-175 484
MS.gene037437.t1 AT3G61430 83.045 289 45 1 1 289 1 285 8.49e-175 484
MS.gene037437.t1 AT4G23400 83.737 289 44 1 1 289 1 286 5.03e-174 482
MS.gene037437.t1 AT2G45960 83.398 259 39 1 1 259 1 255 4.60e-161 449
MS.gene037437.t1 AT2G45960 83.398 259 39 1 1 259 1 255 1.68e-159 446
MS.gene037437.t1 AT3G54820 71.815 259 67 1 31 283 13 271 3.76e-138 391
MS.gene037437.t1 AT1G01620 86.854 213 28 0 77 289 1 213 8.31e-138 388
MS.gene037437.t1 AT2G37170 71.212 264 70 1 31 288 55 318 3.04e-137 390
MS.gene037437.t1 AT2G37170 71.212 264 70 1 31 288 12 275 5.18e-137 389
MS.gene037437.t1 AT3G53420 70.480 271 74 1 24 288 7 277 7.81e-137 388
MS.gene037437.t1 AT3G53420 70.480 271 74 1 24 288 7 277 7.81e-137 388
MS.gene037437.t1 AT2G16850 69.962 263 79 0 26 288 6 268 3.54e-136 386
MS.gene037437.t1 AT4G35100 69.962 263 79 0 26 288 8 270 8.08e-136 385
MS.gene037437.t1 AT4G35100 69.962 263 79 0 26 288 8 270 8.08e-136 385
MS.gene037437.t1 AT5G60660 68.773 269 78 1 26 288 9 277 1.96e-134 382
MS.gene037437.t1 AT2G37180 69.697 264 74 1 31 288 12 275 1.86e-133 379
MS.gene037437.t1 AT2G39010 67.658 269 81 1 26 288 8 276 3.54e-133 379
MS.gene037437.t1 AT4G00430 81.106 217 38 1 1 217 1 214 7.53e-128 363
MS.gene037437.t1 AT2G39010 64.433 194 63 1 26 213 8 201 9.34e-86 256
MS.gene037437.t1 AT1G73190 37.037 243 125 8 56 285 24 251 7.17e-32 119
MS.gene037437.t1 AT1G17810 35.294 238 127 6 56 281 24 246 3.46e-30 115
MS.gene037437.t1 AT5G47450 37.395 238 127 7 47 277 10 232 5.90e-30 114
MS.gene037437.t1 AT3G26520 34.764 233 128 7 56 280 22 238 4.92e-29 111
MS.gene037437.t1 AT3G16240 36.564 227 126 6 56 277 19 232 1.58e-28 110
MS.gene037437.t1 AT4G01470 33.755 237 143 5 47 280 12 237 3.09e-28 109
MS.gene037437.t1 AT2G36830 34.061 229 133 6 56 279 21 236 4.22e-28 108
MS.gene037437.t1 AT4G17340 35.043 234 138 5 47 277 10 232 7.77e-26 102
MS.gene037437.t1 AT2G25810 33.469 245 147 7 43 285 6 236 2.00e-25 102
MS.gene037437.t1 AT3G47440 34.146 246 113 9 56 281 23 239 1.12e-24 100
MS.gene037437.t1 AT4G19030 29.078 282 172 8 4 280 13 271 1.68e-20 89.4
MS.gene037437.t1 AT4G18910 27.451 255 175 5 28 280 22 268 2.57e-18 83.6
MS.gene037437.t1 AT1G31885 30.040 253 144 8 26 270 22 249 1.51e-17 81.6
MS.gene037437.t1 AT2G34390 28.077 260 167 7 24 280 21 263 2.66e-16 77.8
MS.gene037437.t1 AT5G37820 27.315 216 132 6 59 269 46 241 1.39e-14 72.8
MS.gene037437.t1 AT2G34390 28.889 225 145 6 59 280 9 221 1.41e-14 72.0
MS.gene037437.t1 AT5G37820 27.315 216 132 6 59 269 82 277 1.63e-14 72.8
MS.gene037437.t1 AT1G31885 30.500 200 116 6 79 270 11 195 7.48e-14 70.5
MS.gene037437.t1 AT4G10380 28.636 220 137 8 53 270 75 276 2.21e-12 66.6
MS.gene037437.t1 AT5G37810 25.676 222 150 5 59 280 46 252 3.37e-12 65.9
MS.gene037437.t1 AT3G06100 28.452 239 142 9 56 289 46 260 2.20e-11 63.5
MS.gene037437.t1 AT4G19030 27.753 227 139 7 4 225 13 219 6.89e-11 61.2

Find 68 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGGATTGCTTGGGCTTT+TGG 0.139339 4.1:+80941963 MS.gene037437:CDS
TATCATCATGGTCTTTCTAT+AGG 0.284392 4.1:+80941835 MS.gene037437:CDS
TTAATACCAGTCCCTGTAAT+TGG 0.293171 4.1:-80943204 None:intergenic
TGTGGTGCTGCTGTTGTTAA+GGG 0.295039 4.1:+80942515 MS.gene037437:CDS
AACTGAGGAGCATTTATTAC+TGG 0.302827 4.1:-80941934 None:intergenic
TTGGCTACAATTCCAATTAC+AGG 0.327149 4.1:+80943192 MS.gene037437:CDS
TTGTGGTGCTGCTGTTGTTA+AGG 0.328028 4.1:+80942514 MS.gene037437:CDS
AACTCTCCATGCTCAAATAA+AGG 0.345549 4.1:-80941813 None:intergenic
TGCTCCTCAGTTGGTGTTCA+AGG 0.356101 4.1:+80941945 MS.gene037437:CDS
ATCATCATGGTCTTTCTATA+GGG 0.356702 4.1:+80941836 MS.gene037437:CDS
CTACATAATTATGCAATGTT+TGG 0.357596 4.1:+80942484 MS.gene037437:CDS
TACATAATTATGCAATGTTT+GGG 0.360536 4.1:+80942485 MS.gene037437:CDS
GCTCTTGTTTATTGTACTGC+TGG 0.363023 4.1:+80941999 MS.gene037437:CDS
TTGGTGTTCAAGGGATTGCT+TGG 0.385841 4.1:+80941955 MS.gene037437:CDS
GGAGTCTCTTGCATTTCGTT+TGG 0.387360 4.1:-80942675 None:intergenic
TATTGTACTGCTGGTATCTC+AGG 0.389148 4.1:+80942008 MS.gene037437:CDS
ATTAACCCAGCAGTGACATT+TGG 0.392627 4.1:+80942419 MS.gene037437:CDS
GATTGAGCAGCAGTTCCTAT+TGG 0.401413 4.1:-80941747 None:intergenic
GGCAGGGATTGCTGAGTTTG+TGG 0.419906 4.1:+80941857 MS.gene037437:CDS
GGTGCCAACACTCTCAATAA+AGG 0.420596 4.1:+80942572 MS.gene037437:CDS
TTCTGGGTAGGGCCTTTCAC+TGG 0.421787 4.1:+80943867 MS.gene037437:CDS
CAATGTTTGGGTGCTATTTG+TGG 0.422792 4.1:+80942497 MS.gene037437:CDS
AGAGATGAAGATGTAGTAGT+AGG 0.429079 4.1:+80941699 MS.gene037437:CDS
TATAGAGAAAACCAACCAAT+AGG 0.431779 4.1:+80941732 MS.gene037437:CDS
AAAAGTCCAAATGTCACTGC+TGG 0.439553 4.1:-80942425 None:intergenic
TGGTGTTCAAGGGATTGCTT+GGG 0.441333 4.1:+80941956 MS.gene037437:CDS
TGCCTCACTTTGACTTGAAA+GGG 0.453627 4.1:-80943935 None:intergenic
TTGCCTCACTTTGACTTGAA+AGG 0.460204 4.1:-80943936 None:intergenic
AGCTCCAAGTCCATCACCTA+TGG 0.471965 4.1:-80942600 None:intergenic
TCATGGTCTTTCTATAGGGC+AGG 0.472450 4.1:+80941840 MS.gene037437:CDS
GAGCAGCAGTTCCTATTGGT+TGG 0.490667 4.1:-80941743 None:intergenic
TATACAACAAGGACCAAGCT+TGG 0.503497 4.1:+80943256 MS.gene037437:CDS
TACTCCATAGGTGATGGACT+TGG 0.512860 4.1:+80942596 MS.gene037437:CDS
GCAGCACCTAGACTTCTAGC+TGG 0.513663 4.1:-80943228 None:intergenic
GTCTCTCATATTGACGTGGT+TGG 0.520234 4.1:-80942541 None:intergenic
GCAAGTGCTGCTCCAGTGAA+AGG 0.524235 4.1:-80943879 None:intergenic
ACAATTCCAATTACAGGGAC+TGG 0.531107 4.1:+80943198 MS.gene037437:CDS
TATTTAGGCTTACAGGAACA+TGG 0.533113 4.1:-80942697 None:intergenic
ATACAACAAGGACCAAGCTT+GGG 0.536922 4.1:+80943257 MS.gene037437:CDS
TGGCTCTGATGACTATTTGA+TGG 0.539363 4.1:-80943911 None:intergenic
ATTAACCCAGCTAGAAGTCT+AGG 0.540082 4.1:+80943222 MS.gene037437:CDS
GGACTTGGAGCTGAGATTGT+TGG 0.540230 4.1:+80942611 MS.gene037437:CDS
GCTCCTCAGTTGGTGTTCAA+GGG 0.540750 4.1:+80941946 MS.gene037437:CDS
CACGCAAGCTATCTCTAACT+AGG 0.540778 4.1:+80942453 MS.gene037437:CDS
GTAACCTTTATTGAGAGTGT+TGG 0.540829 4.1:-80942576 None:intergenic
TGGCTACAATTCCAATTACA+GGG 0.551529 4.1:+80943193 MS.gene037437:CDS
TGCTCAAATAAAGGTGCTGA+AGG 0.551644 4.1:-80941804 None:intergenic
AAAGGTTACTCCATAGGTGA+TGG 0.553430 4.1:+80942590 MS.gene037437:CDS
TAACATGTTCATCCCAAGCT+TGG 0.555986 4.1:-80943269 None:intergenic
CTCAATAAAGGTTACTCCAT+AGG 0.557582 4.1:+80942584 MS.gene037437:CDS
TCACTTTGACTTGAAAGGGA+TGG 0.562832 4.1:-80943931 None:intergenic
CATGGTCTTTCTATAGGGCA+GGG 0.564902 4.1:+80941841 MS.gene037437:CDS
TCAGCACCTTTATTTGAGCA+TGG 0.566089 4.1:+80941807 MS.gene037437:CDS
AGTAATAAATGCTCCTCAGT+TGG 0.568497 4.1:+80941936 MS.gene037437:CDS
CCACGTCAATATGAGAGACT+TGG 0.574053 4.1:+80942545 MS.gene037437:CDS
ATTTAGGCTTACAGGAACAT+GGG 0.586028 4.1:-80942696 None:intergenic
AAAGTCCAAATGTCACTGCT+GGG 0.595254 4.1:-80942424 None:intergenic
TGAGGCTAAAGACTATAAAG+AGG 0.598693 4.1:+80941779 MS.gene037437:CDS
CGTCAATATGAGAGACTTGG+TGG 0.601958 4.1:+80942548 MS.gene037437:CDS
ACAGCAAATCCAATTGGCAG+TGG 0.605076 4.1:-80943156 None:intergenic
AGCATGGAGAGTTATCATCA+TGG 0.618672 4.1:+80941823 MS.gene037437:CDS
CAGCACCTAGACTTCTAGCT+GGG 0.629681 4.1:-80943227 None:intergenic
TGCTCAATCTCAAGACAATG+AGG 0.633961 4.1:+80941761 MS.gene037437:CDS
ATCCCTTTCAAGTCAAAGTG+AGG 0.643751 4.1:+80943933 MS.gene037437:CDS
AATCCCTTGAACACCAACTG+AGG 0.657135 4.1:-80941949 None:intergenic
CCAAGTCTCTCATATTGACG+TGG 0.671854 4.1:-80942545 None:intergenic
TGCTGCTCTTATATACAACA+AGG 0.684264 4.1:+80943245 MS.gene037437:CDS
CAATATGAGAGACTTGGTGG+TGG 0.725332 4.1:+80942551 MS.gene037437:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTATATTTTTTA+AGG - chr4.1:80942090-80942109 None:intergenic 0.0%
!! ATATATATATTAGTAAGATT+TGG - chr4.1:80943012-80943031 None:intergenic 10.0%
!!! AAAAAAAATTGTTATGTTTT+AGG - chr4.1:80943406-80943425 None:intergenic 10.0%
!!! AATCAATGAAATTAAATTTT+TGG - chr4.1:80943438-80943457 None:intergenic 10.0%
!!! ACTTGATTAATTTTATTTTT+TGG + chr4.1:80943715-80943734 MS.gene037437:intron 10.0%
!!! ATTTTTGTTTCTTTATATAA+CGG + chr4.1:80941884-80941903 MS.gene037437:CDS 10.0%
!! ATTAATTAATCAAGTAGTAA+TGG - chr4.1:80943745-80943764 None:intergenic 15.0%
!! TTAAAATGATTTCTAACATT+AGG - chr4.1:80943484-80943503 None:intergenic 15.0%
!!! AGTGAATTAACATTTTTTTT+TGG - chr4.1:80942864-80942883 None:intergenic 15.0%
!!! ATGAATGAACATTTTTATTT+AGG - chr4.1:80942715-80942734 None:intergenic 15.0%
!!! GTGAATTAACATTTTTTTTT+GGG - chr4.1:80942863-80942882 None:intergenic 15.0%
!! AGAGTTAATAAATAAACTCA+TGG - chr4.1:80943558-80943577 None:intergenic 20.0%
!! ATGAAAGATTTAATATACCT+TGG - chr4.1:80942117-80942136 None:intergenic 20.0%
!! ATGATTCATAACTATTGAAA+TGG + chr4.1:80943067-80943086 MS.gene037437:intron 20.0%
!! TACATAATTATGCAATGTTT+GGG + chr4.1:80942485-80942504 MS.gene037437:CDS 20.0%
!! TATAAAAAAATTAAGTCCCA+AGG + chr4.1:80942097-80942116 MS.gene037437:intron 20.0%
!! TGAAAGATTTAATATACCTT+GGG - chr4.1:80942116-80942135 None:intergenic 20.0%
!!! TAACTCACATTACATTATTT+TGG + chr4.1:80943833-80943852 MS.gene037437:intron 20.0%
! AAAAAAACAGCAAATCCAAT+TGG - chr4.1:80943165-80943184 None:intergenic 25.0%
! ACAAGAGACACAATTATTAT+AGG - chr4.1:80943805-80943824 None:intergenic 25.0%
! ACATTAGGAATCTTATCAAA+AGG - chr4.1:80943469-80943488 None:intergenic 25.0%
! CTACATAATTATGCAATGTT+TGG + chr4.1:80942484-80942503 MS.gene037437:CDS 25.0%
! GATATGTTAGCATAAATCTA+AGG - chr4.1:80942369-80942388 None:intergenic 25.0%
! TCGCTAAAGAATAATGATTT+CGG + chr4.1:80942142-80942161 MS.gene037437:intron 25.0%
!! AACTTTAGTTCATTTATCTC+CGG - chr4.1:80943619-80943638 None:intergenic 25.0%
!! CATTTGAATTACTCAGATTT+TGG + chr4.1:80943131-80943150 MS.gene037437:intron 25.0%
!!! AATTGGATTTGCTGTTTTTT+TGG + chr4.1:80943164-80943183 MS.gene037437:CDS 25.0%
!!! ACATTTTTATTTAGGCTTAC+AGG - chr4.1:80942707-80942726 None:intergenic 25.0%
!!! ATAACGGTTTTAACTGTTAT+GGG + chr4.1:80941900-80941919 MS.gene037437:CDS 25.0%
!!! ATGGCTTTAATATCTAAAAC+CGG - chr4.1:80943539-80943558 None:intergenic 25.0%
!!! TAAGATTTGGATTTCTAGTT+TGG - chr4.1:80942999-80943018 None:intergenic 25.0%
!!! TATAACGGTTTTAACTGTTA+TGG + chr4.1:80941899-80941918 MS.gene037437:CDS 25.0%
!!! TCTTTTTAAGGAGAATAAAC+AGG - chr4.1:80942814-80942833 None:intergenic 25.0%
ACATCGCATAATATATGTAG+GGG + chr4.1:80942766-80942785 MS.gene037437:intron 30.0%
ACTTGTCAATCTTGATCTAA+CGG + chr4.1:80942212-80942231 MS.gene037437:intron 30.0%
ATCATCATGGTCTTTCTATA+GGG + chr4.1:80941836-80941855 MS.gene037437:CDS 30.0%
ATGTGTCTATTTACTAATGC+AGG + chr4.1:80942389-80942408 MS.gene037437:intron 30.0%
GACATCGCATAATATATGTA+GGG + chr4.1:80942765-80942784 MS.gene037437:intron 30.0%
TATAGAGAAAACCAACCAAT+AGG + chr4.1:80941732-80941751 MS.gene037437:CDS 30.0%
TATCATCATGGTCTTTCTAT+AGG + chr4.1:80941835-80941854 MS.gene037437:CDS 30.0%
TTACCAATTATCCTACTATC+CGG + chr4.1:80943517-80943536 MS.gene037437:intron 30.0%
! AATATCTAAAACCGGATAGT+AGG - chr4.1:80943531-80943550 None:intergenic 30.0%
! GGCTAGAATTTCTCTTTTTA+AGG - chr4.1:80942826-80942845 None:intergenic 30.0%
! TTGGTAATTCGAGTTAAAGT+CGG - chr4.1:80942179-80942198 None:intergenic 30.0%
! TTTTGTGTAGTATCATTGCA+TGG - chr4.1:80942957-80942976 None:intergenic 30.0%
!!! ATTACATTATTTTGGTGCAG+TGG + chr4.1:80943841-80943860 MS.gene037437:intron 30.0%
AAACCGGATAGTAGGATAAT+TGG - chr4.1:80943523-80943542 None:intergenic 35.0%
AACTCTCCATGCTCAAATAA+AGG - chr4.1:80941816-80941835 None:intergenic 35.0%
AGAGAAACACACATTTGACA+CGG - chr4.1:80942252-80942271 None:intergenic 35.0%
AGAGATGAAGATGTAGTAGT+AGG + chr4.1:80941699-80941718 MS.gene037437:CDS 35.0%
AGTAATAAATGCTCCTCAGT+TGG + chr4.1:80941936-80941955 MS.gene037437:CDS 35.0%
ATTTAGGCTTACAGGAACAT+GGG - chr4.1:80942699-80942718 None:intergenic 35.0%
CTCAATAAAGGTTACTCCAT+AGG + chr4.1:80942584-80942603 MS.gene037437:CDS 35.0%
GAATTACCAATGTCAAGACT+TGG + chr4.1:80942189-80942208 MS.gene037437:intron 35.0%
GGACATCGCATAATATATGT+AGG + chr4.1:80942764-80942783 MS.gene037437:intron 35.0%
TATTTAGGCTTACAGGAACA+TGG - chr4.1:80942700-80942719 None:intergenic 35.0%
TGAGGCTAAAGACTATAAAG+AGG + chr4.1:80941779-80941798 MS.gene037437:CDS 35.0%
TGCTGCTCTTATATACAACA+AGG + chr4.1:80943245-80943264 MS.gene037437:CDS 35.0%
TGGCTACAATTCCAATTACA+GGG + chr4.1:80943193-80943212 MS.gene037437:CDS 35.0%
TGTCTATTTACTAATGCAGG+TGG + chr4.1:80942392-80942411 MS.gene037437:intron 35.0%
TTAATACCAGTCCCTGTAAT+TGG - chr4.1:80943207-80943226 None:intergenic 35.0%
TTGGCTACAATTCCAATTAC+AGG + chr4.1:80943192-80943211 MS.gene037437:CDS 35.0%
! AGTGACATTTGGACTTTTCT+TGG + chr4.1:80942430-80942449 MS.gene037437:CDS 35.0%
! GTAACCTTTATTGAGAGTGT+TGG - chr4.1:80942579-80942598 None:intergenic 35.0%
!! AACTGAGGAGCATTTATTAC+TGG - chr4.1:80941937-80941956 None:intergenic 35.0%
!! TTTTGGGTCAAATAGCTTAG+TGG - chr4.1:80942847-80942866 None:intergenic 35.0%
!!! TGCTGTTTTTTTGGTGCATT+TGG + chr4.1:80943173-80943192 MS.gene037437:CDS 35.0%
AAAAGTCCAAATGTCACTGC+TGG - chr4.1:80942428-80942447 None:intergenic 40.0%
AAAGGTTACTCCATAGGTGA+TGG + chr4.1:80942590-80942609 MS.gene037437:CDS 40.0%
AAAGTCCAAATGTCACTGCT+GGG - chr4.1:80942427-80942446 None:intergenic 40.0%
ACAAGTCCAAGTCTTGACAT+TGG - chr4.1:80942198-80942217 None:intergenic 40.0%
ACAATTCCAATTACAGGGAC+TGG + chr4.1:80943198-80943217 MS.gene037437:CDS 40.0%
AGCATGGAGAGTTATCATCA+TGG + chr4.1:80941823-80941842 MS.gene037437:CDS 40.0%
ATACAACAAGGACCAAGCTT+GGG + chr4.1:80943257-80943276 MS.gene037437:CDS 40.0%
ATTAACCCAGCAGTGACATT+TGG + chr4.1:80942419-80942438 MS.gene037437:CDS 40.0%
ATTAACCCAGCTAGAAGTCT+AGG + chr4.1:80943222-80943241 MS.gene037437:CDS 40.0%
CATAATATATGTAGGGGTCG+GGG + chr4.1:80942772-80942791 MS.gene037437:intron 40.0%
CGCATAATATATGTAGGGGT+CGG + chr4.1:80942770-80942789 MS.gene037437:intron 40.0%
GAGAATAAACAGGATGTTCG+AGG - chr4.1:80942804-80942823 None:intergenic 40.0%
GCATAATATATGTAGGGGTC+GGG + chr4.1:80942771-80942790 MS.gene037437:intron 40.0%
TAACATGTTCATCCCAAGCT+TGG - chr4.1:80943272-80943291 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+CGG - chr4.1:80942743-80942762 None:intergenic 40.0%
TATACAACAAGGACCAAGCT+TGG + chr4.1:80943256-80943275 MS.gene037437:CDS 40.0%
TATTGTACTGCTGGTATCTC+AGG + chr4.1:80942008-80942027 MS.gene037437:CDS 40.0%
TGCTCAATCTCAAGACAATG+AGG + chr4.1:80941761-80941780 MS.gene037437:CDS 40.0%
TGTGTTTCTCTACCTGCAAA+AGG + chr4.1:80942261-80942280 MS.gene037437:intron 40.0%
TTCTCTACCTGCAAAAGGTT+TGG + chr4.1:80942266-80942285 MS.gene037437:intron 40.0%
TTTGACACGGTCACACAATT+TGG - chr4.1:80942239-80942258 None:intergenic 40.0%
! AACCCTAGTACTTTGAGAAC+CGG + chr4.1:80943597-80943616 MS.gene037437:intron 40.0%
! GCTCTTGTTTATTGTACTGC+TGG + chr4.1:80941999-80942018 MS.gene037437:CDS 40.0%
! TCAGCACCTTTATTTGAGCA+TGG + chr4.1:80941807-80941826 MS.gene037437:CDS 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr4.1:80942743-80942762 MS.gene037437:intron 40.0%
! TTCGAGTTAAAGTCGGACAT+TGG - chr4.1:80942172-80942191 None:intergenic 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG + chr4.1:80942497-80942516 MS.gene037437:CDS 40.0%
!! TCACTTTGACTTGAAAGGGA+TGG - chr4.1:80943934-80943953 None:intergenic 40.0%
!! TGCTCAAATAAAGGTGCTGA+AGG - chr4.1:80941807-80941826 None:intergenic 40.0%
!! TGGCTCTGATGACTATTTGA+TGG - chr4.1:80943914-80943933 None:intergenic 40.0%
!! TTTGGTGCAGTGGATTTTCT+GGG + chr4.1:80943851-80943870 MS.gene037437:intron 40.0%
!! TTTTGGTGCAGTGGATTTTC+TGG + chr4.1:80943850-80943869 MS.gene037437:intron 40.0%
AATCCCTTGAACACCAACTG+AGG - chr4.1:80941952-80941971 None:intergenic 45.0%
ACAGCAAATCCAATTGGCAG+TGG - chr4.1:80943159-80943178 None:intergenic 45.0%
CACGCAAGCTATCTCTAACT+AGG + chr4.1:80942453-80942472 MS.gene037437:CDS 45.0%
CATGGTCTTTCTATAGGGCA+GGG + chr4.1:80941841-80941860 MS.gene037437:CDS 45.0%
CCAAGTCTCTCATATTGACG+TGG - chr4.1:80942548-80942567 None:intergenic 45.0%
CCACGTCAATATGAGAGACT+TGG + chr4.1:80942545-80942564 MS.gene037437:CDS 45.0%
CGTCAATATGAGAGACTTGG+TGG + chr4.1:80942548-80942567 MS.gene037437:CDS 45.0%
GAGTTAAAGTCGGACATTGG+TGG - chr4.1:80942169-80942188 None:intergenic 45.0%
GATTGAGCAGCAGTTCCTAT+TGG - chr4.1:80941750-80941769 None:intergenic 45.0%
GGAGTCTCTTGCATTTCGTT+TGG - chr4.1:80942678-80942697 None:intergenic 45.0%
GGTGCCAACACTCTCAATAA+AGG + chr4.1:80942572-80942591 MS.gene037437:CDS 45.0%
GTCTCTCATATTGACGTGGT+TGG - chr4.1:80942544-80942563 None:intergenic 45.0%
GTGAGCTTAACTCAGTTGGT+AGG + chr4.1:80942742-80942761 MS.gene037437:intron 45.0%
TCATGGTCTTTCTATAGGGC+AGG + chr4.1:80941840-80941859 MS.gene037437:CDS 45.0%
TGAAGAGTGACTACTCTGCT+CGG - chr4.1:80942324-80942343 None:intergenic 45.0%
TGGTGTTCAAGGGATTGCTT+GGG + chr4.1:80941956-80941975 MS.gene037437:CDS 45.0%
! CATGAGTCCAAACCTTTTGC+AGG - chr4.1:80942276-80942295 None:intergenic 45.0%
! CTCCGGTTCTCAAAGTACTA+GGG - chr4.1:80943602-80943621 None:intergenic 45.0%
! TCTCCGGTTCTCAAAGTACT+AGG - chr4.1:80943603-80943622 None:intergenic 45.0%
! TTGGTGTTCAAGGGATTGCT+TGG + chr4.1:80941955-80941974 MS.gene037437:CDS 45.0%
!! ATTTTGGCACCACTGCCAAT+TGG + chr4.1:80943147-80943166 MS.gene037437:CDS 45.0%
!! CAATATGAGAGACTTGGTGG+TGG + chr4.1:80942551-80942570 MS.gene037437:CDS 45.0%
!! TACTCCATAGGTGATGGACT+TGG + chr4.1:80942596-80942615 MS.gene037437:CDS 45.0%
!! TGCAGTGGATTTTCTGGGTA+GGG + chr4.1:80943856-80943875 MS.gene037437:intron 45.0%
!! TGTGGTGCTGCTGTTGTTAA+GGG + chr4.1:80942515-80942534 MS.gene037437:CDS 45.0%
!! TTGTGGTGCTGCTGTTGTTA+AGG + chr4.1:80942514-80942533 MS.gene037437:CDS 45.0%
!! ATTAATTAATTATTTAGTAT+AGG + chr4.1:80943755-80943774 MS.gene037437:intron 5.0%
!! TAATTATATATTTAACATAA+AGG - chr4.1:80942897-80942916 None:intergenic 5.0%
!! TTCTAAATAAAATTAAATTA+TGG - chr4.1:80943327-80943346 None:intergenic 5.0%
AGCTCCAAGTCCATCACCTA+TGG - chr4.1:80942603-80942622 None:intergenic 50.0%
CTCCGTGAGCTTAACTCAGT+TGG + chr4.1:80942738-80942757 MS.gene037437:intron 50.0%
GAGCAGCAGTTCCTATTGGT+TGG - chr4.1:80941746-80941765 None:intergenic 50.0%
GGACTTGGAGCTGAGATTGT+TGG + chr4.1:80942611-80942630 MS.gene037437:CDS 50.0%
! CAAGGGATTGCTTGGGCTTT+TGG + chr4.1:80941963-80941982 MS.gene037437:CDS 50.0%
! CAGCACCTAGACTTCTAGCT+GGG - chr4.1:80943230-80943249 None:intergenic 50.0%
! GCTCCTCAGTTGGTGTTCAA+GGG + chr4.1:80941946-80941965 MS.gene037437:CDS 50.0%
! TGCTCCTCAGTTGGTGTTCA+AGG + chr4.1:80941945-80941964 MS.gene037437:CDS 50.0%
!! GTGCAGTGGATTTTCTGGGT+AGG + chr4.1:80943855-80943874 MS.gene037437:intron 50.0%
GCAGCACCTAGACTTCTAGC+TGG - chr4.1:80943231-80943250 None:intergenic 55.0%
GGCAGGGATTGCTGAGTTTG+TGG + chr4.1:80941857-80941876 MS.gene037437:CDS 55.0%
TTCTGGGTAGGGCCTTTCAC+TGG + chr4.1:80943867-80943886 MS.gene037437:CDS 55.0%
! GCAAGTGCTGCTCCAGTGAA+AGG - chr4.1:80943882-80943901 None:intergenic 55.0%
! GGGATTGCTTGGGCTTTTGG+TGG + chr4.1:80941966-80941985 MS.gene037437:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 80941690 80943953 80941690 ID=MS.gene037437
chr4.1 mRNA 80941690 80943953 80941690 ID=MS.gene037437.t1;Parent=MS.gene037437
chr4.1 exon 80941690 80942029 80941690 ID=MS.gene037437.t1.exon1;Parent=MS.gene037437.t1
chr4.1 CDS 80941690 80942029 80941690 ID=cds.MS.gene037437.t1;Parent=MS.gene037437.t1
chr4.1 exon 80942411 80942706 80942411 ID=MS.gene037437.t1.exon2;Parent=MS.gene037437.t1
chr4.1 CDS 80942411 80942706 80942411 ID=cds.MS.gene037437.t1;Parent=MS.gene037437.t1
chr4.1 exon 80943147 80943287 80943147 ID=MS.gene037437.t1.exon3;Parent=MS.gene037437.t1
chr4.1 CDS 80943147 80943287 80943147 ID=cds.MS.gene037437.t1;Parent=MS.gene037437.t1
chr4.1 exon 80943861 80943953 80943861 ID=MS.gene037437.t1.exon4;Parent=MS.gene037437.t1
chr4.1 CDS 80943861 80943953 80943861 ID=cds.MS.gene037437.t1;Parent=MS.gene037437.t1
Gene Sequence

>MS.gene037437

ATGGAGAATAGAGATGAAGATGTAGTAGTAGGAGCAAACAAGTATAGAGAAAACCAACCAATAGGAACTGCTGCTCAATCTCAAGACAATGAGGCTAAAGACTATAAAGAGGCACCTTCAGCACCTTTATTTGAGCATGGAGAGTTATCATCATGGTCTTTCTATAGGGCAGGGATTGCTGAGTTTGTGGCTACATTTTTGTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTGAATAAATCCAGTAATAAATGCTCCTCAGTTGGTGTTCAAGGGATTGCTTGGGCTTTTGGTGGAATGATTTTTGCTCTTGTTTATTGTACTGCTGGTATCTCAGGTAAAAAATAATATACACTAAATTTAAATTTTTAAGTATCACTTTCTGCAATTTAGTCCTTAAAAAATATAAAAAAATTAAGTCCCAAGGTATATTAAATCTTTCATTTTGTTCGCTAAAGAATAATGATTTCGGACCACCAATGTCCGACTTTAACTCGAATTACCAATGTCAAGACTTGGACTTGTCAATCTTGATCTAACGGTCCAAATTGTGTGACCGTGTCAAATGTGTGTTTCTCTACCTGCAAAAGGTTTGGACTCATGCGCGATGCAACAACTAAAATTAATTCCGAGCAGAGTAGTCACTCTTCACTTTTCAAAGTGTTCAATAAAACCTTAGATTTATGCTAACATATCATGTGTCTATTTACTAATGCAGGTGGTCACATTAACCCAGCAGTGACATTTGGACTTTTCTTGGCACGCAAGCTATCTCTAACTAGGACAGTGTTCTACATAATTATGCAATGTTTGGGTGCTATTTGTGGTGCTGCTGTTGTTAAGGGCTTCCAACCACGTCAATATGAGAGACTTGGTGGTGGTGCCAACACTCTCAATAAAGGTTACTCCATAGGTGATGGACTTGGAGCTGAGATTGTTGGTACATTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAACGAAATGCAAGAGACTCCCATGTTCCTGTAAGCCTAAATAAAAATGTTCATTCATTTTCTCCGTGAGCTTAACTCAGTTGGTAGGGACATCGCATAATATATGTAGGGGTCGGGGTTCGAACCTCGAACATCCTGTTTATTCTCCTTAAAAAGAGAAATTCTAGCCACTAAGCTATTTGACCCAAAAAAAAATGTTAATTCACTAATAGATCATCCTTTATGTTAAATATATAATTACATAAAATTCACAACTATTGAAAAATTAGATTAATTGCCATGCAATGATACTACACAAAAACTTTACATATTCATTAAACCAAACTAGAAATCCAAATCTTACTAATATATATATCATACACTATATGTATATTAAAATTTCATTATTATATGATTCATAACTATTGAAATGGATACATGTTGTATTTTGATGATAATTTTATCTGATTATAAGCATTTGAATTACTCAGATTTTGGCACCACTGCCAATTGGATTTGCTGTTTTTTTGGTGCATTTGGCTACAATTCCAATTACAGGGACTGGTATTAACCCAGCTAGAAGTCTAGGTGCTGCTCTTATATACAACAAGGACCAAGCTTGGGATGAACATGTTAGTCTTTTTCATCTTTATTTTTCTTTTTCATTTCCATAATTTAATTTTATTTAGAACATTTTATTTGAATTATCAATTTAATCTCTAAAATCATAAAATGCGACAATTTGTTCCTAAAACATAACAATTTTTTTTTAAGTAGTTCCAAAAATTTAATTTCATTGATTACGTTAGTCCTTTTGATAAGATTCCTAATGTTAGAAATCATTTTAAAATATCATTAAATTTACCAATTATCCTACTATCCGGTTTTAGATATTAAAGCCATGAGTTTATTTATTAACTCTTCAGTTTTTAGAGAAAATGAACCCTAGTACTTTGAGAACCGGAGATAAATGAACTAAAGTTTGATCATAAAGTGTTTCAGTCGAGCTTGAATTCATATTTTTTTGATCGATTTGACGTTCAATGAGATTCATTAACTACTTGATTAATTTTATTTTTTGGAGAGCCATTACTACTTGATTAATTAATTATTTAGTATAGGTCTATTTTATCTATATACATGTAGCCTATAATAATTGTGTCTCTTGTTAAGATGTTAACTCACATTACATTATTTTGGTGCAGTGGATTTTCTGGGTAGGGCCTTTCACTGGAGCAGCACTTGCAGCTCTTTACCATCAAATAGTCATCAGAGCCATCCCTTTCAAGTCAAAGTGA
Protein sequence

>MS.gene037437.t1

MENRDEDVVVGANKYRENQPIGTAAQSQDNEAKDYKEAPSAPLFEHGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVNKSSNKCSSVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYIIMQCLGAICGAAVVKGFQPRQYERLGGGANTLNKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDEHWIFWVGPFTGAALAALYHQIVIRAIPFKSK