AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79774

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79774.t1 MTR_6g069040 98.824 255 3 0 1 255 1 255 0.0 500
MS.gene79774.t1 MTR_1g077540 79.845 258 49 1 1 255 1 258 2.39e-152 425
MS.gene79774.t1 MTR_1g115405 57.255 255 106 1 1 255 1 252 4.99e-100 292
MS.gene79774.t1 MTR_7g023350 56.863 255 107 1 1 255 1 252 6.17e-94 276
MS.gene79774.t1 MTR_4g063090 54.902 255 112 1 1 255 1 252 3.91e-93 275
MS.gene79774.t1 MTR_7g103030 58.039 255 102 2 1 255 1 250 9.45e-93 273
MS.gene79774.t1 MTR_2g101370 54.800 250 109 1 4 253 3 248 1.10e-91 271
MS.gene79774.t1 MTR_8g013680 53.846 247 110 1 7 253 5 247 1.23e-85 255
MS.gene79774.t1 MTR_5g012810 53.333 240 111 1 5 244 3 241 2.90e-73 224
MS.gene79774.t1 MTR_1g006490 44.800 250 130 3 5 254 3 244 7.07e-71 218
MS.gene79774.t1 MTR_1g006590 45.600 250 128 3 5 254 3 244 1.45e-67 209
MS.gene79774.t1 MTR_2g060360 40.343 233 138 1 10 242 8 239 1.68e-54 176
MS.gene79774.t1 MTR_5g010150 39.419 241 128 8 21 248 52 287 4.64e-35 127
MS.gene79774.t1 MTR_5g082070 38.723 235 128 6 21 243 55 285 5.75e-35 127
MS.gene79774.t1 MTR_2g094270 37.037 243 136 6 12 238 31 272 1.31e-34 125
MS.gene79774.t1 MTR_7g101190 36.910 233 131 5 21 238 39 270 1.39e-34 125
MS.gene79774.t1 MTR_4g415300 38.034 234 130 6 21 243 56 285 3.40e-34 125
MS.gene79774.t1 MTR_3g118010 37.118 229 130 5 21 238 37 262 3.77e-34 124
MS.gene79774.t1 MTR_8g098375 38.298 235 129 7 21 243 52 282 5.28e-34 124
MS.gene79774.t1 MTR_3g070210 37.872 235 130 6 21 243 55 285 1.94e-33 123
MS.gene79774.t1 MTR_5g063930 34.413 247 145 7 12 255 28 260 2.12e-33 122
MS.gene79774.t1 MTR_4g059390 37.712 236 125 7 21 238 39 270 5.98e-33 121
MS.gene79774.t1 MTR_1g095070 39.779 181 97 4 69 238 25 204 1.49e-30 113
MS.gene79774.t1 MTR_5g079570 33.051 236 146 4 20 255 39 262 2.50e-28 108
MS.gene79774.t1 MTR_2g017620 32.895 228 144 5 16 242 19 238 1.56e-27 106
MS.gene79774.t1 MTR_3g008920 33.475 236 144 6 20 251 25 251 1.91e-27 106
MS.gene79774.t1 MTR_2g017620 32.895 228 144 5 16 242 33 252 1.94e-27 106
MS.gene79774.t1 MTR_2g017590 30.435 253 152 6 1 243 13 251 3.31e-27 106
MS.gene79774.t1 MTR_2g104940 32.735 223 142 3 25 247 84 298 2.02e-26 104
MS.gene79774.t1 MTR_2g017660 30.116 259 159 7 1 253 16 258 3.92e-26 103
MS.gene79774.t1 MTR_4g006730 32.110 218 140 3 25 242 79 288 6.47e-25 100
MS.gene79774.t1 MTR_8g087710 31.718 227 142 5 20 243 38 254 1.65e-24 99.0
MS.gene79774.t1 MTR_2g017620 35.542 166 103 3 78 242 9 171 7.21e-24 95.1
MS.gene79774.t1 MTR_2g017610 29.583 240 153 6 10 243 24 253 1.21e-23 96.7
MS.gene79774.t1 MTR_4g084880 29.204 226 151 3 20 243 34 252 1.92e-23 96.3
MS.gene79774.t1 MTR_2g094270 35.545 211 122 5 12 209 31 240 2.21e-23 95.9
MS.gene79774.t1 MTR_2g017570 29.167 240 154 6 10 243 24 253 8.76e-23 94.4
MS.gene79774.t1 MTR_7g010650 32.051 234 147 7 21 254 37 258 1.29e-22 94.0
MS.gene79774.t1 MTR_8g087720 29.461 241 147 6 12 243 27 253 6.08e-22 92.0
MS.gene79774.t1 MTR_4g006630 31.100 209 136 3 34 242 1 201 7.91e-22 90.5
MS.gene79774.t1 MTR_3g070210 33.654 208 121 5 21 214 55 259 9.88e-22 91.7
MS.gene79774.t1 MTR_4g006730 31.100 209 136 3 34 242 1 201 1.07e-21 90.1
MS.gene79774.t1 MTR_1g070385 27.897 233 158 5 21 253 62 284 1.45e-21 94.0
MS.gene79774.t1 MTR_4g415300 33.898 177 108 4 21 193 56 227 2.15e-19 84.3
MS.gene79774.t1 MTR_5g010150 36.364 165 95 5 21 179 52 212 2.89e-19 84.0
MS.gene79774.t1 MTR_1g095070 35.542 166 93 4 69 221 25 189 1.48e-18 81.3
MS.gene79774.t1 MTR_1g097840 28.571 224 149 4 25 245 78 293 2.17e-18 82.8
MS.gene79774.t1 MTR_8g098375 34.545 165 98 5 21 179 52 212 3.53e-18 81.3
MS.gene79774.t1 MTR_3g070210 33.742 163 100 3 21 178 55 214 6.72e-18 80.1
MS.gene79774.t1 MTR_4g059390 35.294 170 95 5 21 179 39 204 2.87e-17 78.2
MS.gene79774.t1 MTR_4g075590 26.772 254 155 7 11 242 27 271 2.19e-14 72.0
MS.gene79774.t1 MTR_4g075570 28.512 242 144 8 13 234 43 275 3.82e-14 71.2
MS.gene79774.t1 MTR_4g006730 32.335 167 105 3 25 191 79 237 3.92e-14 70.5
MS.gene79774.t1 MTR_8g468730 38.144 97 41 3 146 242 8 85 8.13e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79774.t1 AT1G73190 74.621 264 57 3 2 255 5 268 2.55e-126 359
MS.gene79774.t1 AT1G17810 74.144 263 59 3 2 255 5 267 3.35e-124 354
MS.gene79774.t1 AT4G01470 58.824 255 102 1 1 255 1 252 7.05e-102 297
MS.gene79774.t1 AT2G36830 56.078 255 108 1 1 255 1 251 1.53e-98 288
MS.gene79774.t1 AT3G26520 55.859 256 109 2 1 255 1 253 3.61e-96 282
MS.gene79774.t1 AT3G16240 52.209 249 116 1 7 255 5 250 3.55e-84 252
MS.gene79774.t1 AT5G47450 51.304 230 112 0 5 234 3 232 9.86e-78 235
MS.gene79774.t1 AT4G17340 51.250 240 117 0 5 244 3 242 7.93e-72 220
MS.gene79774.t1 AT2G25810 45.418 251 129 3 4 254 2 244 1.25e-67 209
MS.gene79774.t1 AT3G47440 41.593 226 129 3 18 242 20 243 3.20e-50 165
MS.gene79774.t1 AT2G37170 38.153 249 132 8 8 238 24 268 8.62e-37 131
MS.gene79774.t1 AT2G37170 38.153 249 132 8 8 238 67 311 1.04e-36 132
MS.gene79774.t1 AT2G37180 36.538 260 137 8 3 238 13 268 4.06e-36 130
MS.gene79774.t1 AT2G39010 36.864 236 127 6 21 238 38 269 9.00e-35 126
MS.gene79774.t1 AT3G53420 38.559 236 123 7 21 238 39 270 1.40e-34 125
MS.gene79774.t1 AT3G53420 38.559 236 123 7 21 238 39 270 1.40e-34 125
MS.gene79774.t1 AT3G54820 37.179 234 129 7 21 238 38 269 1.80e-34 125
MS.gene79774.t1 AT1G01620 40.598 234 124 7 21 243 52 281 9.57e-34 124
MS.gene79774.t1 AT2G16850 38.961 231 123 7 21 238 36 261 1.34e-33 123
MS.gene79774.t1 AT4G00430 39.301 229 125 6 21 238 53 278 1.84e-33 123
MS.gene79774.t1 AT2G45960 39.744 234 126 7 21 243 52 281 3.51e-33 122
MS.gene79774.t1 AT4G35100 37.555 229 129 5 21 238 38 263 1.29e-32 120
MS.gene79774.t1 AT4G35100 37.555 229 129 5 21 238 38 263 1.29e-32 120
MS.gene79774.t1 AT4G23400 38.655 238 123 8 21 243 53 282 1.52e-32 120
MS.gene79774.t1 AT3G61430 39.316 234 127 7 21 243 52 281 1.60e-32 120
MS.gene79774.t1 AT3G61430 39.316 234 127 7 21 243 52 281 1.60e-32 120
MS.gene79774.t1 AT5G60660 36.864 236 127 7 21 238 39 270 1.15e-31 118
MS.gene79774.t1 AT1G01620 42.784 194 98 5 61 243 18 209 5.56e-31 114
MS.gene79774.t1 AT5G37820 29.596 223 150 3 21 243 43 258 7.29e-27 105
MS.gene79774.t1 AT5G37820 29.596 223 150 3 21 243 79 294 1.47e-26 105
MS.gene79774.t1 AT1G80760 31.651 218 141 4 25 242 84 293 3.00e-25 101
MS.gene79774.t1 AT4G19030 32.035 231 143 6 20 243 54 277 1.01e-23 97.4
MS.gene79774.t1 AT4G18910 31.034 232 144 6 20 243 51 274 2.49e-23 96.3
MS.gene79774.t1 AT5G37810 28.700 223 152 3 21 243 43 258 3.47e-23 95.9
MS.gene79774.t1 AT1G31885 33.043 230 124 6 20 234 42 256 1.42e-22 94.7
MS.gene79774.t1 AT1G52180 62.857 70 26 0 139 208 47 116 4.95e-22 88.6
MS.gene79774.t1 AT2G45960 36.548 197 114 5 21 209 52 245 3.69e-21 90.5
MS.gene79774.t1 AT2G45960 36.548 197 114 5 21 209 52 245 5.01e-21 89.7
MS.gene79774.t1 AT4G10380 29.911 224 146 4 25 245 82 297 1.19e-20 89.4
MS.gene79774.t1 AT3G06100 26.749 243 167 4 3 243 28 261 2.43e-20 87.8
MS.gene79774.t1 AT1G31885 36.571 175 86 4 78 237 41 205 4.28e-20 87.0
MS.gene79774.t1 AT2G39010 34.911 169 95 4 21 178 38 202 1.04e-19 85.1
MS.gene79774.t1 AT3G06100 27.477 222 150 4 24 243 1 213 2.76e-18 81.3
MS.gene79774.t1 AT4G00430 37.126 167 98 4 21 183 53 216 5.64e-18 80.5
MS.gene79774.t1 AT2G34390 27.556 225 148 6 20 237 47 263 1.35e-12 66.6
MS.gene79774.t1 AT4G19030 31.638 177 107 6 20 189 54 223 1.83e-12 65.5
MS.gene79774.t1 AT2G34390 28.054 221 144 6 24 237 9 221 1.93e-12 65.5
MS.gene79774.t1 AT3G06100 28.261 138 97 2 106 243 45 180 6.17e-11 60.5

Find 80 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTAGCATGCATGTATC+TGG 0.205207 6.4:+47474016 MS.gene79774:CDS
TATTGGATTGCTCAACTTCT+AGG 0.222866 6.4:+47474112 MS.gene79774:CDS
ACTTTCATCTTTGTCTTTGC+TGG 0.227521 6.4:+47473572 MS.gene79774:CDS
GGCATTACCACTGGATCTTC+TGG 0.228866 6.4:+47474865 MS.gene79774:CDS
TTCTTCGTGCTGTCTACTAT+TGG 0.235046 6.4:+47474095 MS.gene79774:CDS
ATGAACCCTGCACTTGCTTT+TGG 0.268743 6.4:+47474819 MS.gene79774:CDS
GAAGGCTCTGGCCTTGCTTT+GGG 0.287910 6.4:+47473596 MS.gene79774:CDS
CTTGTTGGTGGTCCATTTGA+TGG 0.299715 6.4:+47474789 MS.gene79774:CDS
GGCTCCAATAGTGCCCCTTT+TGG 0.299772 6.4:-47474724 None:intergenic
AGAAGGCTCTGGCCTTGCTT+TGG 0.312813 6.4:+47473595 MS.gene79774:CDS
CTTGAGATTATCATGACATT+TGG 0.328426 6.4:+47474666 MS.gene79774:CDS
GCAACTCGTAGGTATGCTTT+TGG 0.330854 6.4:+47473488 MS.gene79774:CDS
TAGGCTTGTCACTAATAATA+TGG 0.334782 6.4:+47474159 MS.gene79774:CDS
GTAGGTAACTAGTAATCTTC+AGG 0.345529 6.4:-47474981 None:intergenic
TTCTGGGTCGGTCCATTCAT+TGG 0.348270 6.4:+47474882 MS.gene79774:CDS
TTTCATCTGGCAAGGGGAAT+TGG 0.349294 6.4:+47474624 MS.gene79774:CDS
GTCTTTGCTGGAGAAGGCTC+TGG 0.351672 6.4:+47473584 MS.gene79774:CDS
ATCTTTGTCTTTGCTGGAGA+AGG 0.361094 6.4:+47473578 MS.gene79774:CDS
GATCCCAAAAGGGGCACTAT+TGG 0.365740 6.4:+47474720 MS.gene79774:CDS
GCCATTGCACCTTTAGCAAT+TGG 0.368504 6.4:+47474744 MS.gene79774:CDS
TTGTGGCTGCCCTCTTGCTT+AGG 0.374211 6.4:+47474140 MS.gene79774:CDS
TTTCTCAGCTGGTGAATTGT+TGG 0.394785 6.4:+47473952 MS.gene79774:CDS
TTGGCCCTTCTTTGGTGGGA+TGG 0.410290 6.4:+47474838 MS.gene79774:CDS
CTTCTAGCATGCATGTATCT+GGG 0.413390 6.4:+47474017 MS.gene79774:CDS
AAGGTAGCTCTAATAGAATC+TGG 0.430438 6.4:-47473533 None:intergenic
CAAGATTCAGCTTTCTCAGC+TGG 0.433270 6.4:+47473941 MS.gene79774:CDS
GTGACATTTGGTGCTCTCAT+AGG 0.439857 6.4:+47474058 MS.gene79774:CDS
GTCAACCCAGCAGTGACATT+TGG 0.440018 6.4:+47474046 MS.gene79774:CDS
CTTCTTTGGTGGGATGGAGA+TGG 0.443845 6.4:+47474844 MS.gene79774:CDS
CAACTGCCATTGATCCCAAA+AGG 0.444176 6.4:+47474709 MS.gene79774:CDS
TTCATGCATGCTCCATCAAA+TGG 0.445092 6.4:-47474801 None:intergenic
TTAGCAATTGGACTCATTGT+TGG 0.449771 6.4:+47474756 MS.gene79774:CDS
CATCTCCATCCCACCAAAGA+AGG 0.454047 6.4:-47474843 None:intergenic
TCCATTCATTGGTGCAGCAT+TGG 0.454524 6.4:+47474893 MS.gene79774:CDS
GTTGGTGCAAATATCCTTGT+TGG 0.459750 6.4:+47474774 MS.gene79774:CDS
GCATTACCACTGGATCTTCT+GGG 0.466544 6.4:+47474866 MS.gene79774:CDS
AGAGCACCAAATGTCACTGC+TGG 0.484887 6.4:-47474052 None:intergenic
CAGCTGAGAAAGCTGAATCT+TGG 0.491187 6.4:-47473940 None:intergenic
TGTGCATGAGGTGGCTCAGT+TGG 0.498129 6.4:-47474945 None:intergenic
GCCAATGCTGCACCAATGAA+TGG 0.500062 6.4:-47474894 None:intergenic
GAAGGGCCAAAAGCAAGTGC+AGG 0.506585 6.4:-47474825 None:intergenic
TTCTAGCATGCATGTATCTG+GGG 0.507460 6.4:+47474018 MS.gene79774:CDS
GTGCATGAGGTGGCTCAGTT+GGG 0.508449 6.4:-47474944 None:intergenic
AGCAAAGACAAAGATGAAAG+TGG 0.508555 6.4:-47473570 None:intergenic
AACTGCCATTGATCCCAAAA+GGG 0.512529 6.4:+47474710 MS.gene79774:CDS
CTTGCCAGATGAAACCCTCC+TGG 0.524847 6.4:-47474615 None:intergenic
AATCTTCAGGAGCAAGTGGC+TGG 0.525117 6.4:-47474968 None:intergenic
GAGACCAGGAGGGTTTCATC+TGG 0.538168 6.4:+47474611 MS.gene79774:intron
TCAACTTCTAGGTGCTATTG+TGG 0.546373 6.4:+47474123 MS.gene79774:CDS
AGGGGAATTGGTGTAGGACA+TGG 0.549780 6.4:+47474636 MS.gene79774:CDS
TTGGTGCTCTCATAGGTGGC+AGG 0.554676 6.4:+47474065 MS.gene79774:CDS
GATGGAGATGGCATTACCAC+TGG 0.559557 6.4:+47474856 MS.gene79774:CDS
CAGGAGGGTTTCATCTGGCA+AGG 0.560195 6.4:+47474616 MS.gene79774:CDS
TTCTGTTTATTATAGAGACC+AGG 0.564245 6.4:+47474597 MS.gene79774:intron
TCCAATTGCTAAAGGTGCAA+TGG 0.570541 6.4:-47474745 None:intergenic
GGTGCAAATATCCTTGTTGG+TGG 0.574728 6.4:+47474777 MS.gene79774:CDS
AGTGGAAGCAAATTCAGCTA+AGG 0.584032 6.4:-47473552 None:intergenic
TAGTAATCTTCAGGAGCAAG+TGG 0.584937 6.4:-47474972 None:intergenic
CTGGCAAGGGGAATTGGTGT+AGG 0.587924 6.4:+47474630 MS.gene79774:CDS
TACCACTGGATCTTCTGGGT+CGG 0.589899 6.4:+47474870 MS.gene79774:CDS
AGTGGCTGGTGTGCATGAGG+TGG 0.592718 6.4:-47474954 None:intergenic
ACATTTGGTGCTCTCATAGG+TGG 0.602269 6.4:+47474061 MS.gene79774:CDS
ACAATGAGTCCAATTGCTAA+AGG 0.602275 6.4:-47474753 None:intergenic
AGGAGGGTTTCATCTGGCAA+GGG 0.609867 6.4:+47474617 MS.gene79774:CDS
TAGCTCTAATAGAATCTGGA+TGG 0.613359 6.4:-47473529 None:intergenic
GGAGGGTTTCATCTGGCAAG+GGG 0.615421 6.4:+47474618 MS.gene79774:CDS
AGTGACAAGCCTAAGCAAGA+GGG 0.616950 6.4:-47474149 None:intergenic
GCAAGTGGCTGGTGTGCATG+AGG 0.619828 6.4:-47474957 None:intergenic
CATCAAATGGACCACCAACA+AGG 0.619845 6.4:-47474788 None:intergenic
ATCTCCATCCCACCAAAGAA+GGG 0.620130 6.4:-47474842 None:intergenic
TAGTGACAAGCCTAAGCAAG+AGG 0.625541 6.4:-47474150 None:intergenic
ACACTTTGATGGCAACTCGT+AGG 0.632452 6.4:+47473477 None:intergenic
AAGGGCCAAAAGCAAGTGCA+GGG 0.633175 6.4:-47474824 None:intergenic
TCTAGCATGCATGTATCTGG+GGG 0.635107 6.4:+47474019 MS.gene79774:CDS
GTGTATACAAACCCAAAGCA+AGG 0.641996 6.4:-47473607 None:intergenic
TGTTTATTATAGAGACCAGG+AGG 0.648170 6.4:+47474600 MS.gene79774:intron
ACTGCCATTGATCCCAAAAG+GGG 0.650833 6.4:+47474711 MS.gene79774:CDS
GTTTATTATAGAGACCAGGA+GGG 0.672843 6.4:+47474601 MS.gene79774:intron
GAGCACCAAATGTCACTGCT+GGG 0.683403 6.4:-47474051 None:intergenic
GACCGACCCAGAAGATCCAG+TGG 0.688414 6.4:-47474872 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACATGATTTAAAAAAA+TGG + chr6.4:47474542-47474561 MS.gene79774:intron 10.0%
!! AGTTAATTAATTATGCAACA+AGG - chr6.4:47473648-47473667 None:intergenic 20.0%
!!! AGATTTTCTCAAATTATTAG+CGG - chr6.4:47473744-47473763 None:intergenic 20.0%
!!! TTAGCATTTGTGTTTATTTT+TGG + chr6.4:47473831-47473850 MS.gene79774:intron 20.0%
! ACATACATGATTGAAAACAA+TGG + chr6.4:47474507-47474526 MS.gene79774:intron 25.0%
!! ATTTTCAATAAGAACTCATG+TGG + chr6.4:47474565-47474584 MS.gene79774:intron 25.0%
AGAAGGAGTCATCATAATTT+AGG + chr6.4:47474232-47474251 MS.gene79774:intron 30.0%
CTTGAGATTATCATGACATT+TGG + chr6.4:47474666-47474685 MS.gene79774:CDS 30.0%
TAGGCTTGTCACTAATAATA+TGG + chr6.4:47474159-47474178 MS.gene79774:CDS 30.0%
TGAGAAAATCTCATATGTGT+CGG + chr6.4:47473753-47473772 MS.gene79774:intron 30.0%
TTCTGTTTATTATAGAGACC+AGG + chr6.4:47474597-47474616 MS.gene79774:intron 30.0%
ACAATGAGTCCAATTGCTAA+AGG - chr6.4:47474756-47474775 None:intergenic 35.0%
ACTTTCATCTTTGTCTTTGC+TGG + chr6.4:47473572-47473591 MS.gene79774:CDS 35.0%
AGCAAAGACAAAGATGAAAG+TGG - chr6.4:47473573-47473592 None:intergenic 35.0%
AGGAGTCATCATAATTTAGG+AGG + chr6.4:47474235-47474254 MS.gene79774:intron 35.0%
AGTCATCATAATTTAGGAGG+AGG + chr6.4:47474238-47474257 MS.gene79774:intron 35.0%
CACGTAACACTTCAGATTAA+AGG + chr6.4:47474345-47474364 MS.gene79774:intron 35.0%
CTGAATATGTTAGTCCAATG+TGG + chr6.4:47474292-47474311 MS.gene79774:intron 35.0%
GTCATCATAATTTAGGAGGA+GGG + chr6.4:47474239-47474258 MS.gene79774:intron 35.0%
GTTTATTATAGAGACCAGGA+GGG + chr6.4:47474601-47474620 MS.gene79774:intron 35.0%
TATTGGATTGCTCAACTTCT+AGG + chr6.4:47474112-47474131 MS.gene79774:CDS 35.0%
TCATCATAATTTAGGAGGAG+GGG + chr6.4:47474240-47474259 MS.gene79774:intron 35.0%
TGGACTAACATATTCAGAAG+AGG - chr6.4:47474289-47474308 None:intergenic 35.0%
TGTTTATTATAGAGACCAGG+AGG + chr6.4:47474600-47474619 MS.gene79774:intron 35.0%
TTAGCAATTGGACTCATTGT+TGG + chr6.4:47474756-47474775 MS.gene79774:CDS 35.0%
! AACATATTCAGAAGAGGCAT+TGG - chr6.4:47474283-47474302 None:intergenic 35.0%
! TAAGAACTCATGTGGTGTTA+TGG + chr6.4:47474573-47474592 MS.gene79774:intron 35.0%
!! AAGGTAGCTCTAATAGAATC+TGG - chr6.4:47473536-47473555 None:intergenic 35.0%
!! TAGCTCTAATAGAATCTGGA+TGG - chr6.4:47473532-47473551 None:intergenic 35.0%
AACTGCCATTGATCCCAAAA+GGG + chr6.4:47474710-47474729 MS.gene79774:CDS 40.0%
AGTGGAAGCAAATTCAGCTA+AGG - chr6.4:47473555-47473574 None:intergenic 40.0%
ATCATAATTTAGGAGGAGGG+GGG + chr6.4:47474242-47474261 MS.gene79774:intron 40.0%
ATCTTTGTCTTTGCTGGAGA+AGG + chr6.4:47473578-47473597 MS.gene79774:CDS 40.0%
ATGGCCACATAGTCATAACA+TGG - chr6.4:47473677-47473696 None:intergenic 40.0%
CATCATAATTTAGGAGGAGG+GGG + chr6.4:47474241-47474260 MS.gene79774:intron 40.0%
CATGCCATGTTATGACTATG+TGG + chr6.4:47473670-47473689 MS.gene79774:intron 40.0%
CTTCTAGCATGCATGTATCT+GGG + chr6.4:47474017-47474036 MS.gene79774:CDS 40.0%
GTGTATACAAACCCAAAGCA+AGG - chr6.4:47473610-47473629 None:intergenic 40.0%
GTTGGTGCAAATATCCTTGT+TGG + chr6.4:47474774-47474793 MS.gene79774:CDS 40.0%
TAGTAATCTTCAGGAGCAAG+TGG - chr6.4:47474975-47474994 None:intergenic 40.0%
TCTCATGTGTGTCAGATAGA+AGG + chr6.4:47474215-47474234 MS.gene79774:intron 40.0%
TCTTCTAGCATGCATGTATC+TGG + chr6.4:47474016-47474035 MS.gene79774:CDS 40.0%
TTCATGCATGCTCCATCAAA+TGG - chr6.4:47474804-47474823 None:intergenic 40.0%
TTCTAGCATGCATGTATCTG+GGG + chr6.4:47474018-47474037 MS.gene79774:CDS 40.0%
TTCTTCGTGCTGTCTACTAT+TGG + chr6.4:47474095-47474114 MS.gene79774:CDS 40.0%
TTTCTCAGCTGGTGAATTGT+TGG + chr6.4:47473952-47473971 MS.gene79774:CDS 40.0%
! AGTGCCATGTGTCAGTTTTT+CGG + chr6.4:47474434-47474453 MS.gene79774:intron 40.0%
! TCCAATTGCTAAAGGTGCAA+TGG - chr6.4:47474748-47474767 None:intergenic 40.0%
!! TCAACTTCTAGGTGCTATTG+TGG + chr6.4:47474123-47474142 MS.gene79774:CDS 40.0%
!! TCGTAGGTATGCTTTTGGAA+GGG + chr6.4:47473493-47473512 MS.gene79774:CDS 40.0%
ACTAAGACACCTCTAATCCG+AGG + chr6.4:47473789-47473808 MS.gene79774:intron 45.0%
ACTGCCATTGATCCCAAAAG+GGG + chr6.4:47474711-47474730 MS.gene79774:CDS 45.0%
AGTGACAAGCCTAAGCAAGA+GGG - chr6.4:47474152-47474171 None:intergenic 45.0%
ATCTCCATCCCACCAAAGAA+GGG - chr6.4:47474845-47474864 None:intergenic 45.0%
CAACTGCCATTGATCCCAAA+AGG + chr6.4:47474709-47474728 MS.gene79774:CDS 45.0%
CAAGATTCAGCTTTCTCAGC+TGG + chr6.4:47473941-47473960 MS.gene79774:CDS 45.0%
CAAGCCGAAAAACTGACACA+TGG - chr6.4:47474441-47474460 None:intergenic 45.0%
CAGCTGAGAAAGCTGAATCT+TGG - chr6.4:47473943-47473962 None:intergenic 45.0%
CATCAAATGGACCACCAACA+AGG - chr6.4:47474791-47474810 None:intergenic 45.0%
GCATTACCACTGGATCTTCT+GGG + chr6.4:47474866-47474885 MS.gene79774:CDS 45.0%
GCCATTGCACCTTTAGCAAT+TGG + chr6.4:47474744-47474763 MS.gene79774:CDS 45.0%
GGTGCAAATATCCTTGTTGG+TGG + chr6.4:47474777-47474796 MS.gene79774:CDS 45.0%
TACAAAGCACAGACACTCCT+CGG - chr6.4:47473809-47473828 None:intergenic 45.0%
TAGTGACAAGCCTAAGCAAG+AGG - chr6.4:47474153-47474172 None:intergenic 45.0%
TCCATTCATTGGTGCAGCAT+TGG + chr6.4:47474893-47474912 MS.gene79774:CDS 45.0%
TCTAGCATGCATGTATCTGG+GGG + chr6.4:47474019-47474038 MS.gene79774:CDS 45.0%
TTTCATCTGGCAAGGGGAAT+TGG + chr6.4:47474624-47474643 MS.gene79774:CDS 45.0%
! ATGAACCCTGCACTTGCTTT+TGG + chr6.4:47474819-47474838 MS.gene79774:CDS 45.0%
! CTCGTAGGTATGCTTTTGGA+AGG + chr6.4:47473492-47473511 MS.gene79774:CDS 45.0%
! GCAACTCGTAGGTATGCTTT+TGG + chr6.4:47473488-47473507 MS.gene79774:CDS 45.0%
!! ACATTTGGTGCTCTCATAGG+TGG + chr6.4:47474061-47474080 MS.gene79774:CDS 45.0%
!! ACTTGCTTTTGGCCCTTCTT+TGG + chr6.4:47474830-47474849 MS.gene79774:CDS 45.0%
!! CTTGTTGGTGGTCCATTTGA+TGG + chr6.4:47474789-47474808 MS.gene79774:CDS 45.0%
!! GTGACATTTGGTGCTCTCAT+AGG + chr6.4:47474058-47474077 MS.gene79774:CDS 45.0%
AAGGGCCAAAAGCAAGTGCA+GGG - chr6.4:47474827-47474846 None:intergenic 50.0%
AATCTTCAGGAGCAAGTGGC+TGG - chr6.4:47474971-47474990 None:intergenic 50.0%
AATGACACGCGTGTCCACAT+TGG - chr6.4:47474309-47474328 None:intergenic 50.0%
AGGAGGGTTTCATCTGGCAA+GGG + chr6.4:47474617-47474636 MS.gene79774:CDS 50.0%
AGGGGAATTGGTGTAGGACA+TGG + chr6.4:47474636-47474655 MS.gene79774:CDS 50.0%
CATCTCCATCCCACCAAAGA+AGG - chr6.4:47474846-47474865 None:intergenic 50.0%
CTTCTTTGGTGGGATGGAGA+TGG + chr6.4:47474844-47474863 MS.gene79774:CDS 50.0%
GACTATGTGGCCATGAAGCA+CGG + chr6.4:47473683-47473702 MS.gene79774:intron 50.0%
GAGCACCAAATGTCACTGCT+GGG - chr6.4:47474054-47474073 None:intergenic 50.0%
GATGGAGATGGCATTACCAC+TGG + chr6.4:47474856-47474875 MS.gene79774:CDS 50.0%
GCCAATGCTGCACCAATGAA+TGG - chr6.4:47474897-47474916 None:intergenic 50.0%
GGCATTACCACTGGATCTTC+TGG + chr6.4:47474865-47474884 MS.gene79774:CDS 50.0%
GTCAACCCAGCAGTGACATT+TGG + chr6.4:47474046-47474065 MS.gene79774:CDS 50.0%
TACCACTGGATCTTCTGGGT+CGG + chr6.4:47474870-47474889 MS.gene79774:CDS 50.0%
TGTTCAGTGTCCGTGCTTCA+TGG - chr6.4:47473696-47473715 None:intergenic 50.0%
TTCTGGGTCGGTCCATTCAT+TGG + chr6.4:47474882-47474901 MS.gene79774:CDS 50.0%
! ACAGACACTCCTCGGATTAG+AGG - chr6.4:47473801-47473820 None:intergenic 50.0%
! AGAGCACCAAATGTCACTGC+TGG - chr6.4:47474055-47474074 None:intergenic 50.0%
! GCTCCAATAGTGCCCCTTTT+GGG - chr6.4:47474726-47474745 None:intergenic 50.0%
! GCTTTTGGCCCTTCTTTGGT+GGG + chr6.4:47474834-47474853 MS.gene79774:CDS 50.0%
! TGCTTTTGGCCCTTCTTTGG+TGG + chr6.4:47474833-47474852 MS.gene79774:CDS 50.0%
!! GATCCCAAAAGGGGCACTAT+TGG + chr6.4:47474720-47474739 MS.gene79774:CDS 50.0%
!! TGCTTTTGGAAGGGCTGATG+AGG + chr6.4:47473502-47473521 MS.gene79774:CDS 50.0%
!! TGGCACTGACACATGACACA+TGG - chr6.4:47474421-47474440 None:intergenic 50.0%
!!! AGTGCCCCTTTTGGGATCAA+TGG - chr6.4:47474718-47474737 None:intergenic 50.0%
CACGGACACTGAACACGACT+CGG + chr6.4:47473701-47473720 MS.gene79774:intron 55.0%
CAGGAGGGTTTCATCTGGCA+AGG + chr6.4:47474616-47474635 MS.gene79774:CDS 55.0%
CTGGCAAGGGGAATTGGTGT+AGG + chr6.4:47474630-47474649 MS.gene79774:CDS 55.0%
CTTGCCAGATGAAACCCTCC+TGG - chr6.4:47474618-47474637 None:intergenic 55.0%
GAAGGGCCAAAAGCAAGTGC+AGG - chr6.4:47474828-47474847 None:intergenic 55.0%
GAGACCAGGAGGGTTTCATC+TGG + chr6.4:47474611-47474630 MS.gene79774:intron 55.0%
GAGGGGGGTGAGAATAGGTT+AGG + chr6.4:47474257-47474276 MS.gene79774:intron 55.0%
GGAGGGTTTCATCTGGCAAG+GGG + chr6.4:47474618-47474637 MS.gene79774:CDS 55.0%
GTCTTTGCTGGAGAAGGCTC+TGG + chr6.4:47473584-47473603 MS.gene79774:CDS 55.0%
GTGCATGAGGTGGCTCAGTT+GGG - chr6.4:47474947-47474966 None:intergenic 55.0%
TGTGCATGAGGTGGCTCAGT+TGG - chr6.4:47474948-47474967 None:intergenic 55.0%
TTGGCCCTTCTTTGGTGGGA+TGG + chr6.4:47474838-47474857 MS.gene79774:CDS 55.0%
TTGTGGCTGCCCTCTTGCTT+AGG + chr6.4:47474140-47474159 MS.gene79774:CDS 55.0%
! GGCTCCAATAGTGCCCCTTT+TGG - chr6.4:47474727-47474746 None:intergenic 55.0%
! TTGGTGCTCTCATAGGTGGC+AGG + chr6.4:47474065-47474084 MS.gene79774:CDS 55.0%
!! AGAAGGCTCTGGCCTTGCTT+TGG + chr6.4:47473595-47473614 MS.gene79774:CDS 55.0%
!! GAAGGCTCTGGCCTTGCTTT+GGG + chr6.4:47473596-47473615 MS.gene79774:CDS 55.0%
AGGAGGAGGGGGGTGAGAAT+AGG + chr6.4:47474252-47474271 MS.gene79774:intron 60.0%
AGTGGCTGGTGTGCATGAGG+TGG - chr6.4:47474957-47474976 None:intergenic 60.0%
GACCGACCCAGAAGATCCAG+TGG - chr6.4:47474875-47474894 None:intergenic 60.0%
GCAAGTGGCTGGTGTGCATG+AGG - chr6.4:47474960-47474979 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 47473485 47474995 47473485 ID=MS.gene79774
chr6.4 mRNA 47473485 47474995 47473485 ID=MS.gene79774.t1;Parent=MS.gene79774
chr6.4 exon 47473485 47473617 47473485 ID=MS.gene79774.t1.exon1;Parent=MS.gene79774.t1
chr6.4 CDS 47473485 47473617 47473485 ID=cds.MS.gene79774.t1;Parent=MS.gene79774.t1
chr6.4 exon 47473930 47474180 47473930 ID=MS.gene79774.t1.exon2;Parent=MS.gene79774.t1
chr6.4 CDS 47473930 47474180 47473930 ID=cds.MS.gene79774.t1;Parent=MS.gene79774.t1
chr6.4 exon 47474612 47474995 47474612 ID=MS.gene79774.t1.exon3;Parent=MS.gene79774.t1
chr6.4 CDS 47474612 47474995 47474612 ID=cds.MS.gene79774.t1;Parent=MS.gene79774.t1
Gene Sequence

>MS.gene79774

ATGGCAACTCGTAGGTATGCTTTTGGAAGGGCTGATGAGGCTTACCATCCAGATTCTATTAGAGCTACCTTAGCTGAATTTGCTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGGTTTGTATACACTCAAAATTAACATATCCTTGTTGCATAATTAATTAACTAGCATGCCATGTTATGACTATGTGGCCATGAAGCACGGACACTGAACACGACTCGGACACTGACATGCAGATACCGCTAATAATTTGAGAAAATCTCATATGTGTCGGTGTTGTATCTGACACTAAGACACCTCTAATCCGAGGAGTGTCTGTGCTTTGTAACTTAGCATTTGTGTTTATTTTTGGTGCATGCATATATATATATATATATTATTATAGTATGTTGATTGTGATTTTTATGCATTGTGTCTCTTTCTTACAGTTAAGATTTACCAAGATTCAGCTTTCTCAGCTGGTGAATTGTTGGCAGTTGCACTAGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCTAGCATGCATGTATCTGGGGGTCATGTCAACCCAGCAGTGACATTTGGTGCTCTCATAGGTGGCAGGATCTCTGTTCTTCGTGCTGTCTACTATTGGATTGCTCAACTTCTAGGTGCTATTGTGGCTGCCCTCTTGCTTAGGCTTGTCACTAATAATATGGTAATCATTTTTTTGATGAATGAGTCATAATTTTTCTCATGTGTGTCAGATAGAAGGAGTCATCATAATTTAGGAGGAGGGGGGTGAGAATAGGTTAGGCCAATGCCTCTTCTGAATATGTTAGTCCAATGTGGACACGCGTGTCATTTTTCGTCACTTTTCGTCACGTAACACTTCAGATTAAAGGTGTGACATGAGTACACGCACAAGTATCTGACACTTTATATTAAAGACGTGCCATGTGTCATGTGTCAGTGCCATGTGTCAGTTTTTCGGCTTGTCTATGTCAAACATCATAGAAAATATAGTAAAAAAGATTAAATAATACATACATGATTGAAAACAATGGATTTTCTATAATATTTACATGATTTAAAAAAATGGATTTTCAATAAGAACTCATGTGGTGTTATGGTTTCTGTTTATTATAGAGACCAGGAGGGTTTCATCTGGCAAGGGGAATTGGTGTAGGACATGGACTTATACTTGAGATTATCATGACATTTGGACTAATGTACACAGTATATGCAACTGCCATTGATCCCAAAAGGGGCACTATTGGAGCCATTGCACCTTTAGCAATTGGACTCATTGTTGGTGCAAATATCCTTGTTGGTGGTCCATTTGATGGAGCATGCATGAACCCTGCACTTGCTTTTGGCCCTTCTTTGGTGGGATGGAGATGGCATTACCACTGGATCTTCTGGGTCGGTCCATTCATTGGTGCAGCATTGGCAGCACTCATATATGAATATCTTGTGATCCCAACTGAGCCACCTCATGCACACCAGCCACTTGCTCCTGAAGATTACTAG
Protein sequence

>MS.gene79774.t1

MATRRYAFGRADEAYHPDSIRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQLLGAIVAALLLRLVTNNMRPGGFHLARGIGVGHGLILEIIMTFGLMYTVYATAIDPKRGTIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIFWVGPFIGAALAALIYEYLVIPTEPPHAHQPLAPEDY