AlfalfaGEDB | MS.gene33486

M. sativa cultivar XinJiangDaYe / MS.gene33486

KEGG: K09872
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015267 GO:0016020 GO:0022803 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00230.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33486.t1	XP_013455159.1	91.2	294	19	2	1	292	1	289	6.00E-143	516.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33486.t1	Q39196	77.6	294	56	3	1	292	1	286	1.0e-122	441.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33486.t1	A0A072UGL5	91.2	294	19	2	1	292	1	289	4.3e-143	516.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052743	MS.gene33486	0.813381	2.63E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene002639	MS.gene33486	PPI
MS.gene27853	MS.gene33486	PPI
MS.gene004953	MS.gene33486	PPI
MS.gene004324	MS.gene33486	PPI
MS.gene062190	MS.gene33486	PPI
MS.gene33486	MS.gene048817	PPI
MS.gene025449	MS.gene33486	PPI
MS.gene33486	MS.gene79774	PPI
MS.gene67362	MS.gene33486	PPI
MS.gene49432	MS.gene33486	PPI
MS.gene03090	MS.gene33486	PPI
MS.gene006958	MS.gene33486	PPI
MS.gene023622	MS.gene33486	PPI
MS.gene61127	MS.gene33486	PPI
MS.gene32446	MS.gene33486	PPI
MS.gene72127	MS.gene33486	PPI
MS.gene006961	MS.gene33486	PPI
MS.gene31709	MS.gene33486	PPI
MS.gene71137	MS.gene33486	PPI
MS.gene34830	MS.gene33486	PPI
MS.gene019314	MS.gene33486	PPI
MS.gene059380	MS.gene33486	PPI
MS.gene27852	MS.gene33486	PPI
MS.gene006960	MS.gene33486	PPI
MS.gene72129	MS.gene33486	PPI
MS.gene021393	MS.gene33486	PPI
MS.gene025056	MS.gene33486	PPI
MS.gene03094	MS.gene33486	PPI
MS.gene065972	MS.gene33486	PPI
MS.gene006959	MS.gene33486	PPI
MS.gene072777	MS.gene33486	PPI
MS.gene21620	MS.gene33486	PPI
MS.gene03093	MS.gene33486	PPI
MS.gene83316	MS.gene33486	PPI
MS.gene024637	MS.gene33486	PPI
MS.gene048817	MS.gene33486	PPI
MS.gene014206	MS.gene33486	PPI
MS.gene33486	MS.gene042849	PPI
MS.gene01624	MS.gene33486	PPI
MS.gene34032	MS.gene33486	PPI
MS.gene023621	MS.gene33486	PPI
MS.gene021061	MS.gene33486	PPI
MS.gene07481	MS.gene33486	PPI
MS.gene54792	MS.gene33486	PPI
MS.gene002643	MS.gene33486	PPI
MS.gene01627	MS.gene33486	PPI
MS.gene32445	MS.gene33486	PPI
MS.gene93201	MS.gene33486	PPI
MS.gene069812	MS.gene33486	PPI
MS.gene004321	MS.gene33486	PPI
MS.gene006957	MS.gene33486	PPI
MS.gene059531	MS.gene33486	PPI
MS.gene005974	MS.gene33486	PPI
MS.gene059378	MS.gene33486	PPI
MS.gene33486	MS.gene93201	PPI
MS.gene021394	MS.gene33486	PPI
MS.gene01625	MS.gene33486	PPI
MS.gene067014	MS.gene33486	PPI
MS.gene03121	MS.gene33486	PPI
MS.gene004088	MS.gene33486	PPI
MS.gene059379	MS.gene33486	PPI
MS.gene002640	MS.gene33486	PPI
MS.gene065973	MS.gene33486	PPI
MS.gene004322	MS.gene33486	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33486.t1	MTR_4g415300	91.156	294	19	2	1	292	1	289	0.0	535
MS.gene33486.t1	MTR_8g098375	76.109	293	59	4	3	292	2	286	1.39e-158	443
MS.gene33486.t1	MTR_5g010150	76.451	293	58	4	3	292	2	286	5.28e-157	439
MS.gene33486.t1	MTR_4g415300	98.122	213	4	0	1	213	1	213	4.18e-155	432
MS.gene33486.t1	MTR_5g082070	73.559	295	69	4	1	292	1	289	1.84e-153	430
MS.gene33486.t1	MTR_3g070210	73.469	294	69	4	1	291	1	288	4.98e-152	427
MS.gene33486.t1	MTR_3g070210	79.693	261	51	2	1	260	1	260	8.34e-152	426
MS.gene33486.t1	MTR_8g098375	75.758	231	50	3	3	230	2	229	1.07e-123	353
MS.gene33486.t1	MTR_7g101190	71.548	239	62	1	33	265	16	254	2.42e-122	352
MS.gene33486.t1	MTR_5g010150	81.132	212	36	2	3	213	2	210	1.22e-121	347
MS.gene33486.t1	MTR_2g094270	69.262	244	66	2	26	260	8	251	6.63e-121	347
MS.gene33486.t1	MTR_2g094270	67.871	249	71	2	26	265	8	256	3.13e-120	346
MS.gene33486.t1	MTR_3g070210	76.636	214	48	2	1	213	1	213	1.42e-117	337
MS.gene33486.t1	MTR_3g118010	68.511	235	74	0	31	265	12	246	1.61e-117	339
MS.gene33486.t1	MTR_4g059390	65.447	246	79	1	26	265	9	254	3.74e-115	333
MS.gene33486.t1	MTR_1g095070	74.286	175	41	1	100	274	23	193	3.73e-91	269
MS.gene33486.t1	MTR_1g095070	76.506	166	39	0	100	265	23	188	1.59e-89	266
MS.gene33486.t1	MTR_4g059390	63.918	194	64	1	26	213	9	202	1.62e-85	255
MS.gene33486.t1	MTR_7g103030	35.749	207	118	6	56	259	21	215	2.05e-22	94.0
MS.gene33486.t1	MTR_2g101370	35.149	202	120	4	51	249	15	208	3.68e-22	93.2
MS.gene33486.t1	MTR_1g115405	33.471	242	134	8	48	280	13	236	4.20e-21	90.5
MS.gene33486.t1	MTR_1g077540	33.784	222	123	8	56	267	21	228	6.54e-21	90.1
MS.gene33486.t1	MTR_8g013680	35.437	206	116	6	51	249	12	207	2.16e-20	88.2
MS.gene33486.t1	MTR_6g069040	32.636	239	145	6	56	286	21	251	2.16e-20	88.6
MS.gene33486.t1	MTR_1g006490	33.953	215	120	7	56	265	19	216	8.53e-20	86.7
MS.gene33486.t1	MTR_4g063090	33.173	208	125	5	61	265	26	222	1.87e-19	85.9
MS.gene33486.t1	MTR_5g012810	35.025	197	116	4	56	249	19	206	6.65e-19	84.3
MS.gene33486.t1	MTR_1g006590	34.101	217	117	9	56	265	19	216	3.76e-18	82.0
MS.gene33486.t1	MTR_7g023350	33.333	219	130	6	56	268	21	229	1.85e-17	80.5
MS.gene33486.t1	MTR_8g087710	30.435	207	130	6	47	252	30	223	4.77e-17	79.7
MS.gene33486.t1	MTR_2g060360	33.333	210	102	7	56	249	19	206	1.46e-16	77.8
MS.gene33486.t1	MTR_2g017660	27.413	259	164	9	45	292	28	273	1.19e-15	75.9
MS.gene33486.t1	MTR_5g063930	25.610	246	156	6	25	268	19	239	1.56e-15	75.1
MS.gene33486.t1	MTR_2g017590	31.336	217	135	7	59	273	39	243	6.56e-15	73.6
MS.gene33486.t1	MTR_2g017620	30.435	230	146	7	54	281	22	239	7.39e-15	73.2
MS.gene33486.t1	MTR_2g017620	30.435	230	146	7	54	281	36	253	8.71e-15	73.2
MS.gene33486.t1	MTR_8g087720	28.037	214	141	6	53	265	35	236	3.79e-14	71.2
MS.gene33486.t1	MTR_2g017610	29.381	194	125	4	59	252	41	222	7.68e-14	70.5
MS.gene33486.t1	MTR_4g006730	28.365	208	133	6	60	265	79	272	7.88e-14	70.9
MS.gene33486.t1	MTR_2g104940	29.327	208	131	7	60	265	84	277	1.51e-13	70.1
MS.gene33486.t1	MTR_2g017570	28.866	194	126	4	59	252	41	222	2.14e-13	69.3
MS.gene33486.t1	MTR_7g010650	29.442	197	122	7	54	248	35	216	3.86e-13	68.6
MS.gene33486.t1	MTR_5g079570	25.498	251	154	7	1	249	1	220	2.20e-12	66.2
MS.gene33486.t1	MTR_4g075570	28.652	178	107	7	103	265	95	267	8.93e-12	65.1
MS.gene33486.t1	MTR_4g075590	26.087	230	153	7	48	265	29	253	3.39e-11	63.2
MS.gene33486.t1	MTR_1g097840	28.846	208	132	7	60	265	78	271	3.54e-11	63.2
MS.gene33486.t1	MTR_4g084880	26.923	208	141	5	59	265	38	235	4.56e-11	62.4
MS.gene33486.t1	MTR_1g070385	25.969	258	145	9	53	289	59	291	6.25e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33486.t1	AT2G45960	81.185	287	50	1	1	287	1	283	1.19e-174	484
MS.gene33486.t1	AT4G00430	77.551	294	56	3	1	292	1	286	1.33e-163	456
MS.gene33486.t1	AT2G45960	80.364	275	50	1	1	275	1	271	1.62e-162	452
MS.gene33486.t1	AT2G45960	76.531	294	58	3	1	292	1	285	8.53e-162	451
MS.gene33486.t1	AT3G61430	76.871	294	57	3	1	292	1	285	8.62e-156	436
MS.gene33486.t1	AT3G61430	76.871	294	57	3	1	292	1	285	8.62e-156	436
MS.gene33486.t1	AT1G01620	76.531	294	58	3	1	292	1	285	5.25e-155	434
MS.gene33486.t1	AT4G23400	76.871	294	58	3	1	292	1	286	1.13e-154	433
MS.gene33486.t1	AT4G00430	80.645	217	39	1	1	217	1	214	1.12e-127	362
MS.gene33486.t1	AT4G35100	70.417	240	71	0	26	265	8	247	1.60e-122	352
MS.gene33486.t1	AT4G35100	70.417	240	71	0	26	265	8	247	1.60e-122	352
MS.gene33486.t1	AT2G16850	69.583	240	73	0	26	265	6	245	4.96e-122	350
MS.gene33486.t1	AT3G53420	69.758	248	69	1	24	265	7	254	5.81e-122	350
MS.gene33486.t1	AT3G53420	69.758	248	69	1	24	265	7	254	5.81e-122	350
MS.gene33486.t1	AT3G54820	69.874	239	66	1	33	265	15	253	1.08e-121	350
MS.gene33486.t1	AT2G37170	69.710	241	67	1	31	265	55	295	4.12e-121	350
MS.gene33486.t1	AT2G37170	69.710	241	67	1	31	265	12	252	9.00e-121	347
MS.gene33486.t1	AT5G60660	68.293	246	72	1	26	265	9	254	7.02e-120	345
MS.gene33486.t1	AT2G37180	68.465	241	70	1	31	265	12	252	6.63e-118	340
MS.gene33486.t1	AT1G01620	77.064	218	43	2	77	292	1	213	1.84e-117	336
MS.gene33486.t1	AT2G39010	66.260	246	77	1	26	265	8	253	3.71e-117	338
MS.gene33486.t1	AT2G39010	63.918	194	64	1	26	213	8	201	7.17e-86	256
MS.gene33486.t1	AT5G47450	36.087	230	127	7	47	268	10	227	3.21e-23	95.9
MS.gene33486.t1	AT1G73190	32.743	226	117	9	56	265	24	230	8.79e-22	92.4
MS.gene33486.t1	AT3G26520	34.434	212	115	7	56	259	22	217	3.77e-21	90.5
MS.gene33486.t1	AT3G16240	36.364	198	111	5	56	248	19	206	1.02e-20	89.4
MS.gene33486.t1	AT2G36830	33.971	209	120	6	56	259	21	216	5.71e-20	87.4
MS.gene33486.t1	AT1G17810	31.982	222	124	6	56	265	24	230	1.41e-19	86.7
MS.gene33486.t1	AT3G47440	33.636	220	102	8	56	255	23	218	1.99e-19	85.9
MS.gene33486.t1	AT4G17340	34.101	217	131	5	56	268	19	227	3.84e-19	85.1
MS.gene33486.t1	AT4G01470	31.532	222	138	5	47	265	12	222	4.15e-18	82.0
MS.gene33486.t1	AT4G19030	29.365	252	153	7	4	250	13	244	9.64e-18	82.0
MS.gene33486.t1	AT2G25810	32.889	225	135	7	43	265	6	216	1.55e-17	80.5
MS.gene33486.t1	AT1G31885	30.472	233	132	7	26	250	22	232	4.92e-15	74.7
MS.gene33486.t1	AT4G18910	27.434	226	157	4	28	251	22	242	5.90e-15	73.9
MS.gene33486.t1	AT5G37820	26.761	213	133	6	59	265	82	277	8.93e-12	65.1
MS.gene33486.t1	AT5G37820	26.761	213	133	6	59	265	46	241	1.04e-11	64.7
MS.gene33486.t1	AT1G31885	31.111	180	104	5	79	250	11	178	2.06e-11	63.5
MS.gene33486.t1	AT4G19030	27.753	227	139	7	4	225	13	219	9.55e-11	60.8

Find 68 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGGAATTGCTTGGGCTTT+TGG	0.196988	4.3:+83151687	MS.gene33486:CDS
TATCATCATGGTCTTTCTAT+AGG	0.284392	4.3:+83151559	MS.gene33486:CDS
TTAATACCAGTCCCTGTAAT+TGG	0.293171	4.3:-83152929	None:intergenic
TGTGGTGCTGCTGTTGTTAA+GGG	0.295039	4.3:+83152239	MS.gene33486:CDS
AACTGAGGAGCATTTATTAC+TGG	0.302827	4.3:-83151658	None:intergenic
TTGGCTACAATTCCAATTAC+AGG	0.327149	4.3:+83152917	MS.gene33486:CDS
TTGTGGTGCTGCTGTTGTTA+AGG	0.328028	4.3:+83152238	MS.gene33486:CDS
AACTCTCCATGCTCAAATAA+AGG	0.345549	4.3:-83151537	None:intergenic
TGCTCCTCAGTTGGTGTTCA+AGG	0.352446	4.3:+83151669	MS.gene33486:CDS
ATCATCATGGTCTTTCTATA+GGG	0.356702	4.3:+83151560	MS.gene33486:CDS
CTACATAATTATGCAATGTT+TGG	0.357596	4.3:+83152208	MS.gene33486:CDS
TACATAATTATGCAATGTTT+GGG	0.360536	4.3:+83152209	MS.gene33486:CDS
GCTCTTGTTTATTGTACTGC+TGG	0.363023	4.3:+83151723	MS.gene33486:CDS
GGAGTCTCTTGCATTTCGTT+TGG	0.387360	4.3:-83152399	None:intergenic
TATTGTACTGCTGGTATCTC+AGG	0.389148	4.3:+83151732	MS.gene33486:CDS
ATTAACCCAGCAGTGACATT+TGG	0.392627	4.3:+83152143	MS.gene33486:CDS
GATTGAGCAGCAGTTCCTAT+TGG	0.401413	4.3:-83151471	None:intergenic
GGCAGGGATTGCTGAGTTTG+TGG	0.419906	4.3:+83151581	MS.gene33486:CDS
GGTGCCAACACTCTCAATAA+AGG	0.420596	4.3:+83152296	MS.gene33486:CDS
TTCTGGGTAGGGCCTTTCAC+TGG	0.421787	4.3:+83153639	MS.gene33486:CDS
CAATGTTTGGGTGCTATTTG+TGG	0.422792	4.3:+83152221	MS.gene33486:CDS
TGGTGTTCAAGGAATTGCTT+GGG	0.425172	4.3:+83151680	MS.gene33486:CDS
AGAGATGAAGATGTAGTAGT+AGG	0.429079	4.3:+83151423	MS.gene33486:CDS
TATAGAGAAAACCAACCAAT+AGG	0.431779	4.3:+83151456	MS.gene33486:CDS
AAAAGTCCAAATGTCACTGC+TGG	0.439553	4.3:-83152149	None:intergenic
TGCCTCACTTTGACTTGAAA+GGG	0.453627	4.3:-83153712	None:intergenic
TTGCCTCACTTTGACTTGAA+AGG	0.460204	4.3:-83153713	None:intergenic
AGCTCCAAGTCCATCACCTA+TGG	0.471965	4.3:-83152324	None:intergenic
TCATGGTCTTTCTATAGGGC+AGG	0.472450	4.3:+83151564	MS.gene33486:CDS
TTGGTGTTCAAGGAATTGCT+TGG	0.480404	4.3:+83151679	MS.gene33486:CDS
GAGCAGCAGTTCCTATTGGT+TGG	0.490667	4.3:-83151467	None:intergenic
TATACAACAAGGACCAAGCT+TGG	0.503497	4.3:+83152981	MS.gene33486:CDS
TACTCCATAGGTGATGGACT+TGG	0.512860	4.3:+83152320	MS.gene33486:CDS
GCAGCACCTAGACTTCTAGC+TGG	0.513663	4.3:-83152953	None:intergenic
GTCTCTCATATTGACGTGGT+TGG	0.520234	4.3:-83152265	None:intergenic
GCAAGTGCTGCTCCAGTGAA+AGG	0.524235	4.3:-83153651	None:intergenic
ACAATTCCAATTACAGGGAC+TGG	0.531107	4.3:+83152923	MS.gene33486:CDS
TATTTAGGCTTACAGGAACA+TGG	0.533113	4.3:-83152421	None:intergenic
ATACAACAAGGACCAAGCTT+GGG	0.536922	4.3:+83152982	MS.gene33486:CDS
TGGCTCTGATGACTATTTGA+TGG	0.540063	4.3:-83153683	None:intergenic
ATTAACCCAGCTAGAAGTCT+AGG	0.540082	4.3:+83152947	MS.gene33486:CDS
GGACTTGGAGCTGAGATTGT+TGG	0.540230	4.3:+83152335	MS.gene33486:CDS
CACGCAAGCTATCTCTAACT+AGG	0.540778	4.3:+83152177	MS.gene33486:CDS
GTAACCTTTATTGAGAGTGT+TGG	0.540829	4.3:-83152300	None:intergenic
TTGACTTGAAAGGGATGGCA+TGG	0.547077	4.3:-83153703	None:intergenic
TGGCTACAATTCCAATTACA+GGG	0.551529	4.3:+83152918	MS.gene33486:CDS
TGCTCAAATAAAGGTGCTGA+AGG	0.551644	4.3:-83151528	None:intergenic
AAAGGTTACTCCATAGGTGA+TGG	0.553430	4.3:+83152314	MS.gene33486:CDS
CTCAATAAAGGTTACTCCAT+AGG	0.557582	4.3:+83152308	MS.gene33486:CDS
TAACATGGTCATCCCAAGCT+TGG	0.558282	4.3:-83152994	None:intergenic
CATGGTCTTTCTATAGGGCA+GGG	0.564902	4.3:+83151565	MS.gene33486:CDS
TCAGCACCTTTATTTGAGCA+TGG	0.566089	4.3:+83151531	MS.gene33486:CDS
AGTAATAAATGCTCCTCAGT+TGG	0.568497	4.3:+83151660	MS.gene33486:CDS
TCACTTTGACTTGAAAGGGA+TGG	0.570267	4.3:-83153708	None:intergenic
CCACGTCAATATGAGAGACT+TGG	0.574053	4.3:+83152269	MS.gene33486:CDS
ATTTAGGCTTACAGGAACAT+GGG	0.586028	4.3:-83152420	None:intergenic
AAAGTCCAAATGTCACTGCT+GGG	0.595254	4.3:-83152148	None:intergenic
TGAGGCTAAAGACTATAAAG+AGG	0.598693	4.3:+83151503	MS.gene33486:CDS
CGTCAATATGAGAGACTTGG+TGG	0.601958	4.3:+83152272	MS.gene33486:CDS
ACAGCAAATCCAATTGGCAG+TGG	0.605076	4.3:-83152881	None:intergenic
AGCATGGAGAGTTATCATCA+TGG	0.618672	4.3:+83151547	MS.gene33486:CDS
CAGCACCTAGACTTCTAGCT+GGG	0.629681	4.3:-83152952	None:intergenic
TGCTCAATCTCAAGACAATG+AGG	0.633961	4.3:+83151485	MS.gene33486:CDS
ATCCCTTTCAAGTCAAAGTG+AGG	0.643751	4.3:+83153710	MS.gene33486:CDS
AATTCCTTGAACACCAACTG+AGG	0.654839	4.3:-83151673	None:intergenic
CCAAGTCTCTCATATTGACG+TGG	0.671854	4.3:-83152269	None:intergenic
TGCTGCTCTTATATACAACA+AGG	0.684264	4.3:+83152970	MS.gene33486:CDS
CAATATGAGAGACTTGGTGG+TGG	0.725332	4.3:+83152275	MS.gene33486:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TAATTTTTTTATATTTTTTA+AGG	-	chr4.3:83151814-83151833	None:intergenic	0.0%
!!	ATATATATATTAGTAAGATT+TGG	-	chr4.3:83152737-83152756	None:intergenic	10.0%
!!!	ACTTGATTAATTTTATTTTT+TGG	+	chr4.3:83153487-83153506	MS.gene33486:intron	10.0%
!!!	ATTTTTGTTTCTTTATATAA+CGG	+	chr4.3:83151608-83151627	MS.gene33486:CDS	10.0%
!!!	TAAAAAAATTGTTATGTTTT+AGG	-	chr4.3:83153131-83153150	None:intergenic	10.0%
!!!	TGAATTAACATTTTTTTTTT+GGG	-	chr4.3:83152587-83152606	None:intergenic	10.0%
!!	ATTAATTAATCAAGTAGTAA+TGG	-	chr4.3:83153517-83153536	None:intergenic	15.0%
!!	TTAAAATGATTTCTAACATT+AGG	-	chr4.3:83153253-83153272	None:intergenic	15.0%
!!!	AATCAATGAAGTTAAATTTT+TGG	-	chr4.3:83153161-83153180	None:intergenic	15.0%
!!!	ATGAATGAACATTTTTATTT+AGG	-	chr4.3:83152439-83152458	None:intergenic	15.0%
!!!	GTGAATTAACATTTTTTTTT+TGG	-	chr4.3:83152588-83152607	None:intergenic	15.0%
!!	ATGAAAGATTTAATATACCT+TGG	-	chr4.3:83151841-83151860	None:intergenic	20.0%
!!	ATGATTCATAACTATTGAAA+TGG	+	chr4.3:83152792-83152811	MS.gene33486:intron	20.0%
!!	TACATAATTATGCAATGTTT+GGG	+	chr4.3:83152209-83152228	MS.gene33486:CDS	20.0%
!!	TATAAAAAAATTAAGTCCCA+AGG	+	chr4.3:83151821-83151840	MS.gene33486:intron	20.0%
!!	TGAAAGATTTAATATACCTT+GGG	-	chr4.3:83151840-83151859	None:intergenic	20.0%
!!!	ATTGCTTTAATATCTAAAAC+CGG	-	chr4.3:83153308-83153327	None:intergenic	20.0%
!!!	TAACTCACATTACATTATTT+TGG	+	chr4.3:83153605-83153624	MS.gene33486:intron	20.0%
!	AAAAAAACAGCAAATCCAAT+TGG	-	chr4.3:83152890-83152909	None:intergenic	25.0%
!	AAAGATGAAAAAGACTAACA+TGG	-	chr4.3:83153012-83153031	None:intergenic	25.0%
!	ACAAGAGACACAATTATTAT+AGG	-	chr4.3:83153577-83153596	None:intergenic	25.0%
!	CTACATAATTATGCAATGTT+TGG	+	chr4.3:83152208-83152227	MS.gene33486:CDS	25.0%
!	GATATGTTAGCATAAATCTA+AGG	-	chr4.3:83152093-83152112	None:intergenic	25.0%
!	TCGCTAAAGAATAATGATTT+CGG	+	chr4.3:83151866-83151885	MS.gene33486:intron	25.0%
!!	AACTTTAGTTCATTTATCTC+CGG	-	chr4.3:83153388-83153407	None:intergenic	25.0%
!!	CATTTGAATTACTCAGATTT+TGG	+	chr4.3:83152856-83152875	MS.gene33486:intron	25.0%
!!!	AATTGGATTTGCTGTTTTTT+TGG	+	chr4.3:83152889-83152908	MS.gene33486:CDS	25.0%
!!!	ACATTTTTATTTAGGCTTAC+AGG	-	chr4.3:83152431-83152450	None:intergenic	25.0%
!!!	ATAACGGTTTTAACTGTTAT+GGG	+	chr4.3:83151624-83151643	MS.gene33486:CDS	25.0%
!!!	CTTTTTAAGGAGAATAAACA+GGG	-	chr4.3:83152537-83152556	None:intergenic	25.0%
!!!	TAAGATTTGGATTTCTAGTT+TGG	-	chr4.3:83152724-83152743	None:intergenic	25.0%
!!!	TATAACGGTTTTAACTGTTA+TGG	+	chr4.3:83151623-83151642	MS.gene33486:CDS	25.0%
!!!	TCTTTTTAAGGAGAATAAAC+AGG	-	chr4.3:83152538-83152557	None:intergenic	25.0%
	ACATCGCATAATATATGTAG+GGG	+	chr4.3:83152490-83152509	MS.gene33486:intron	30.0%
	ACTTGTCAATCTTGATCTAA+CGG	+	chr4.3:83151936-83151955	MS.gene33486:intron	30.0%
	ATCATCATGGTCTTTCTATA+GGG	+	chr4.3:83151560-83151579	MS.gene33486:CDS	30.0%
	ATGTGTCTATTTACTAATGC+AGG	+	chr4.3:83152113-83152132	MS.gene33486:intron	30.0%
	GACATCGCATAATATATGTA+GGG	+	chr4.3:83152489-83152508	MS.gene33486:intron	30.0%
	TATAGAGAAAACCAACCAAT+AGG	+	chr4.3:83151456-83151475	MS.gene33486:CDS	30.0%
	TATCATCATGGTCTTTCTAT+AGG	+	chr4.3:83151559-83151578	MS.gene33486:CDS	30.0%
	TTACCAATTATCCTACTATC+CGG	+	chr4.3:83153286-83153305	MS.gene33486:intron	30.0%
!	AATATCTAAAACCGGATAGT+AGG	-	chr4.3:83153300-83153319	None:intergenic	30.0%
!	GGCTAGAATTTCTCTTTTTA+AGG	-	chr4.3:83152550-83152569	None:intergenic	30.0%
!	TTGGTAATTCGAGTTAAAGT+CGG	-	chr4.3:83151903-83151922	None:intergenic	30.0%
!	TTTTGTGTAGTATCATTGCA+TGG	-	chr4.3:83152682-83152701	None:intergenic	30.0%
!!	TTACGTTAGTCCTTTTGATT+CGG	+	chr4.3:83153179-83153198	MS.gene33486:intron	30.0%
!!!	ATTACATTATTTTGGTGCAG+TGG	+	chr4.3:83153613-83153632	MS.gene33486:intron	30.0%
	AAACCGGATAGTAGGATAAT+TGG	-	chr4.3:83153292-83153311	None:intergenic	35.0%
	AACTCTCCATGCTCAAATAA+AGG	-	chr4.3:83151540-83151559	None:intergenic	35.0%
	ACCAAATTCACCGAATCAAA+AGG	-	chr4.3:83153192-83153211	None:intergenic	35.0%
	AGAGAAACACACATTTGACA+CGG	-	chr4.3:83151976-83151995	None:intergenic	35.0%
	AGAGATGAAGATGTAGTAGT+AGG	+	chr4.3:83151423-83151442	MS.gene33486:CDS	35.0%
	AGTAATAAATGCTCCTCAGT+TGG	+	chr4.3:83151660-83151679	MS.gene33486:CDS	35.0%
	ATTTAGGCTTACAGGAACAT+GGG	-	chr4.3:83152423-83152442	None:intergenic	35.0%
	CTCAATAAAGGTTACTCCAT+AGG	+	chr4.3:83152308-83152327	MS.gene33486:CDS	35.0%
	GAATTACCAATGTCAAGACT+TGG	+	chr4.3:83151913-83151932	MS.gene33486:intron	35.0%
	GGACATCGCATAATATATGT+AGG	+	chr4.3:83152488-83152507	MS.gene33486:intron	35.0%
	TATTTAGGCTTACAGGAACA+TGG	-	chr4.3:83152424-83152443	None:intergenic	35.0%
	TGAGGCTAAAGACTATAAAG+AGG	+	chr4.3:83151503-83151522	MS.gene33486:CDS	35.0%
	TGCTGCTCTTATATACAACA+AGG	+	chr4.3:83152970-83152989	MS.gene33486:CDS	35.0%
	TGGCTACAATTCCAATTACA+GGG	+	chr4.3:83152918-83152937	MS.gene33486:CDS	35.0%
	TGTCTATTTACTAATGCAGG+TGG	+	chr4.3:83152116-83152135	MS.gene33486:intron	35.0%
	TTAATACCAGTCCCTGTAAT+TGG	-	chr4.3:83152932-83152951	None:intergenic	35.0%
	TTGGCTACAATTCCAATTAC+AGG	+	chr4.3:83152917-83152936	MS.gene33486:CDS	35.0%
!	AGTGACATTTGGACTTTTCT+TGG	+	chr4.3:83152154-83152173	MS.gene33486:CDS	35.0%
!	GTAACCTTTATTGAGAGTGT+TGG	-	chr4.3:83152303-83152322	None:intergenic	35.0%
!!	AACTGAGGAGCATTTATTAC+TGG	-	chr4.3:83151661-83151680	None:intergenic	35.0%
!!	TTTTGGGTCAAATAGCTTAG+TGG	-	chr4.3:83152571-83152590	None:intergenic	35.0%
!!!	TCCTTTTGATTCGGTGAATT+TGG	+	chr4.3:83153188-83153207	MS.gene33486:intron	35.0%
!!!	TGCTGTTTTTTTGGTGCATT+TGG	+	chr4.3:83152898-83152917	MS.gene33486:CDS	35.0%
	AAAAGTCCAAATGTCACTGC+TGG	-	chr4.3:83152152-83152171	None:intergenic	40.0%
	AAAGGTTACTCCATAGGTGA+TGG	+	chr4.3:83152314-83152333	MS.gene33486:CDS	40.0%
	AAAGTCCAAATGTCACTGCT+GGG	-	chr4.3:83152151-83152170	None:intergenic	40.0%
	AATTCCTTGAACACCAACTG+AGG	-	chr4.3:83151676-83151695	None:intergenic	40.0%
	ACAAGTCCAAGTCTTGACAT+TGG	-	chr4.3:83151922-83151941	None:intergenic	40.0%
	ACAATTCCAATTACAGGGAC+TGG	+	chr4.3:83152923-83152942	MS.gene33486:CDS	40.0%
	AGCATGGAGAGTTATCATCA+TGG	+	chr4.3:83151547-83151566	MS.gene33486:CDS	40.0%
	ATACAACAAGGACCAAGCTT+GGG	+	chr4.3:83152982-83153001	MS.gene33486:CDS	40.0%
	ATTAACCCAGCAGTGACATT+TGG	+	chr4.3:83152143-83152162	MS.gene33486:CDS	40.0%
	ATTAACCCAGCTAGAAGTCT+AGG	+	chr4.3:83152947-83152966	MS.gene33486:CDS	40.0%
	CATAATATATGTAGGGGTCG+GGG	+	chr4.3:83152496-83152515	MS.gene33486:intron	40.0%
	CGCATAATATATGTAGGGGT+CGG	+	chr4.3:83152494-83152513	MS.gene33486:intron	40.0%
	GCATAATATATGTAGGGGTC+GGG	+	chr4.3:83152495-83152514	MS.gene33486:intron	40.0%
	TACCAACTGAGTTAAGCTCA+CGG	-	chr4.3:83152467-83152486	None:intergenic	40.0%
	TATACAACAAGGACCAAGCT+TGG	+	chr4.3:83152981-83153000	MS.gene33486:CDS	40.0%
	TATTGTACTGCTGGTATCTC+AGG	+	chr4.3:83151732-83151751	MS.gene33486:CDS	40.0%
	TGCTCAATCTCAAGACAATG+AGG	+	chr4.3:83151485-83151504	MS.gene33486:CDS	40.0%
	TGGTGTTCAAGGAATTGCTT+GGG	+	chr4.3:83151680-83151699	MS.gene33486:CDS	40.0%
	TGTGTTTCTCTACCTGCAAA+AGG	+	chr4.3:83151985-83152004	MS.gene33486:intron	40.0%
	TTCTCTACCTGCAAAAGGTT+TGG	+	chr4.3:83151990-83152009	MS.gene33486:intron	40.0%
	TTTGACACGGTCACACAATT+TGG	-	chr4.3:83151963-83151982	None:intergenic	40.0%
!	AACCCTAGTACTTTGAGAAC+CGG	+	chr4.3:83153366-83153385	MS.gene33486:intron	40.0%
!	GCTCTTGTTTATTGTACTGC+TGG	+	chr4.3:83151723-83151742	MS.gene33486:CDS	40.0%
!	TCAGCACCTTTATTTGAGCA+TGG	+	chr4.3:83151531-83151550	MS.gene33486:CDS	40.0%
!	TGAGCTTAACTCAGTTGGTA+GGG	+	chr4.3:83152467-83152486	MS.gene33486:intron	40.0%
!	TTCGAGTTAAAGTCGGACAT+TGG	-	chr4.3:83151896-83151915	None:intergenic	40.0%
!	TTGGTGTTCAAGGAATTGCT+TGG	+	chr4.3:83151679-83151698	MS.gene33486:CDS	40.0%
!!	CAATGTTTGGGTGCTATTTG+TGG	+	chr4.3:83152221-83152240	MS.gene33486:CDS	40.0%
!!	TCACTTTGACTTGAAAGGGA+TGG	-	chr4.3:83153711-83153730	None:intergenic	40.0%
!!	TGCTCAAATAAAGGTGCTGA+AGG	-	chr4.3:83151531-83151550	None:intergenic	40.0%
!!	TGGCTCTGATGACTATTTGA+TGG	-	chr4.3:83153686-83153705	None:intergenic	40.0%
!!	TTTGGTGCAGTGGATTTTCT+GGG	+	chr4.3:83153623-83153642	MS.gene33486:intron	40.0%
!!	TTTTGGTGCAGTGGATTTTC+TGG	+	chr4.3:83153622-83153641	MS.gene33486:intron	40.0%
	ACAGCAAATCCAATTGGCAG+TGG	-	chr4.3:83152884-83152903	None:intergenic	45.0%
	CACGCAAGCTATCTCTAACT+AGG	+	chr4.3:83152177-83152196	MS.gene33486:CDS	45.0%
	CATGGTCTTTCTATAGGGCA+GGG	+	chr4.3:83151565-83151584	MS.gene33486:CDS	45.0%
	CCAAGTCTCTCATATTGACG+TGG	-	chr4.3:83152272-83152291	None:intergenic	45.0%
	CCACGTCAATATGAGAGACT+TGG	+	chr4.3:83152269-83152288	MS.gene33486:CDS	45.0%
	CGTCAATATGAGAGACTTGG+TGG	+	chr4.3:83152272-83152291	MS.gene33486:CDS	45.0%
	GAGTTAAAGTCGGACATTGG+TGG	-	chr4.3:83151893-83151912	None:intergenic	45.0%
	GATTGAGCAGCAGTTCCTAT+TGG	-	chr4.3:83151474-83151493	None:intergenic	45.0%
	GGAGTCTCTTGCATTTCGTT+TGG	-	chr4.3:83152402-83152421	None:intergenic	45.0%
	GGTGCCAACACTCTCAATAA+AGG	+	chr4.3:83152296-83152315	MS.gene33486:CDS	45.0%
	GTCTCTCATATTGACGTGGT+TGG	-	chr4.3:83152268-83152287	None:intergenic	45.0%
	GTGAGCTTAACTCAGTTGGT+AGG	+	chr4.3:83152466-83152485	MS.gene33486:intron	45.0%
	TAACATGGTCATCCCAAGCT+TGG	-	chr4.3:83152997-83153016	None:intergenic	45.0%
	TCATGGTCTTTCTATAGGGC+AGG	+	chr4.3:83151564-83151583	MS.gene33486:CDS	45.0%
	TGAAGAGTGACTACTCTGCT+CGG	-	chr4.3:83152048-83152067	None:intergenic	45.0%
!	CAAGGAATTGCTTGGGCTTT+TGG	+	chr4.3:83151687-83151706	MS.gene33486:CDS	45.0%
!	CATGAGTCCAAACCTTTTGC+AGG	-	chr4.3:83152000-83152019	None:intergenic	45.0%
!	CTCCGGTTCTCAAAGTACTA+GGG	-	chr4.3:83153371-83153390	None:intergenic	45.0%
!	GAGAATAAACAGGGTGTTCG+AGG	-	chr4.3:83152528-83152547	None:intergenic	45.0%
!	TCTCCGGTTCTCAAAGTACT+AGG	-	chr4.3:83153372-83153391	None:intergenic	45.0%
!	TTGACTTGAAAGGGATGGCA+TGG	-	chr4.3:83153706-83153725	None:intergenic	45.0%
!!	ATTTTGGCACCACTGCCAAT+TGG	+	chr4.3:83152872-83152891	MS.gene33486:CDS	45.0%
!!	CAATATGAGAGACTTGGTGG+TGG	+	chr4.3:83152275-83152294	MS.gene33486:CDS	45.0%
!!	TACTCCATAGGTGATGGACT+TGG	+	chr4.3:83152320-83152339	MS.gene33486:CDS	45.0%
!!	TGCAGTGGATTTTCTGGGTA+GGG	+	chr4.3:83153628-83153647	MS.gene33486:intron	45.0%
!!	TGTGGTGCTGCTGTTGTTAA+GGG	+	chr4.3:83152239-83152258	MS.gene33486:CDS	45.0%
!!	TTGTGGTGCTGCTGTTGTTA+AGG	+	chr4.3:83152238-83152257	MS.gene33486:CDS	45.0%
!!	ATTAATTAATTATTTAGTAT+AGG	+	chr4.3:83153527-83153546	MS.gene33486:intron	5.0%
!!	TAATTATATATTTAACATAA+AGG	-	chr4.3:83152622-83152641	None:intergenic	5.0%
!!	TTCTAAATAAAATTAAAATA+TGG	-	chr4.3:83153052-83153071	None:intergenic	5.0%
	AGCTCCAAGTCCATCACCTA+TGG	-	chr4.3:83152327-83152346	None:intergenic	50.0%
	CTCCGTGAGCTTAACTCAGT+TGG	+	chr4.3:83152462-83152481	MS.gene33486:intron	50.0%
	GAGCAGCAGTTCCTATTGGT+TGG	-	chr4.3:83151470-83151489	None:intergenic	50.0%
	GGACTTGGAGCTGAGATTGT+TGG	+	chr4.3:83152335-83152354	MS.gene33486:CDS	50.0%
!	CAGCACCTAGACTTCTAGCT+GGG	-	chr4.3:83152955-83152974	None:intergenic	50.0%
!	GGAATTGCTTGGGCTTTTGG+TGG	+	chr4.3:83151690-83151709	MS.gene33486:CDS	50.0%
!	TGCTCCTCAGTTGGTGTTCA+AGG	+	chr4.3:83151669-83151688	MS.gene33486:CDS	50.0%
!!	GTGCAGTGGATTTTCTGGGT+AGG	+	chr4.3:83153627-83153646	MS.gene33486:intron	50.0%
	GCAGCACCTAGACTTCTAGC+TGG	-	chr4.3:83152956-83152975	None:intergenic	55.0%
	GGCAGGGATTGCTGAGTTTG+TGG	+	chr4.3:83151581-83151600	MS.gene33486:CDS	55.0%
	TTCTGGGTAGGGCCTTTCAC+TGG	+	chr4.3:83153639-83153658	MS.gene33486:CDS	55.0%
!	GCAAGTGCTGCTCCAGTGAA+AGG	-	chr4.3:83153654-83153673	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	83151414	83153730	83151414	ID=MS.gene33486
chr4.3	mRNA	83151414	83153730	83151414	ID=MS.gene33486.t1;Parent=MS.gene33486
chr4.3	exon	83151414	83151753	83151414	ID=MS.gene33486.t1.exon1;Parent=MS.gene33486.t1
chr4.3	CDS	83151414	83151753	83151414	ID=cds.MS.gene33486.t1;Parent=MS.gene33486.t1
chr4.3	exon	83152135	83152430	83152135	ID=MS.gene33486.t1.exon2;Parent=MS.gene33486.t1
chr4.3	CDS	83152135	83152430	83152135	ID=cds.MS.gene33486.t1;Parent=MS.gene33486.t1
chr4.3	exon	83152872	83153016	83152872	ID=MS.gene33486.t1.exon3;Parent=MS.gene33486.t1
chr4.3	CDS	83152872	83153016	83152872	ID=cds.MS.gene33486.t1;Parent=MS.gene33486.t1
chr4.3	exon	83153633	83153730	83153633	ID=MS.gene33486.t1.exon4;Parent=MS.gene33486.t1
chr4.3	CDS	83153633	83153730	83153633	ID=cds.MS.gene33486.t1;Parent=MS.gene33486.t1

Gene Sequence

>MS.gene33486

ATGGAGAATAGAGATGAAGATGTAGTAGTAGGAGCAAACAAGTATAGAGAAAACCAACCAATAGGAACTGCTGCTCAATCTCAAGACAATGAGGCTAAAGACTATAAAGAGGCACCTTCAGCACCTTTATTTGAGCATGGAGAGTTATCATCATGGTCTTTCTATAGGGCAGGGATTGCTGAGTTTGTGGCTACATTTTTGTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTGAATAAATCCAGTAATAAATGCTCCTCAGTTGGTGTTCAAGGAATTGCTTGGGCTTTTGGTGGAATGATTTTTGCTCTTGTTTATTGTACTGCTGGTATCTCAGGTAAAAAATAATACACACTAAATTTAAATTTTTAAGTATCACTTTCTGCAATTTAGTCCTTAAAAAATATAAAAAAATTAAGTCCCAAGGTATATTAAATCTTTCATTTTGTTCGCTAAAGAATAATGATTTCGGACCACCAATGTCCGACTTTAACTCGAATTACCAATGTCAAGACTTGGACTTGTCAATCTTGATCTAACGGTCCAAATTGTGTGACCGTGTCAAATGTGTGTTTCTCTACCTGCAAAAGGTTTGGACTCATGCGCGATGCAACAACTAAAATTAATTCCGAGCAGAGTAGTCACTCTTCACTTTTCAAAGTGTTCAATAAAACCTTAGATTTATGCTAACATATCATGTGTCTATTTACTAATGCAGGTGGTCACATTAACCCAGCAGTGACATTTGGACTTTTCTTGGCACGCAAGCTATCTCTAACTAGGACACTGTTCTACATAATTATGCAATGTTTGGGTGCTATTTGTGGTGCTGCTGTTGTTAAGGGCTTCCAACCACGTCAATATGAGAGACTTGGTGGTGGTGCCAACACTCTCAATAAAGGTTACTCCATAGGTGATGGACTTGGAGCTGAGATTGTTGGTACATTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAACGAAATGCAAGAGACTCCCATGTTCCTGTAAGCCTAAATAAAAATGTTCATTCATTTTCTCCGTGAGCTTAACTCAGTTGGTAGGGACATCGCATAATATATGTAGGGGTCGGGGTTCGAACCTCGAACACCCTGTTTATTCTCCTTAAAAAGAGAAATTCTAGCCACTAAGCTATTTGACCCAAAAAAAAAATGTTAATTCACTAATAGATCATCCTTTATGTTAAATATATAATTACATAAAATTCACAACTATTGAAAAATTAGATTAATTGCCATGCAATGATACTACACAAAAACTTTACATATTCATTAAACCAAACTAGAAATCCAAATCTTACTAATATATATATCATACACTATATGTATATTAAAATTTCATTATTATATGATTCATAACTATTGAAATGGATACATGTTGTATTTTGATGATAATTTTATCTGATTATAAGCATTTGAATTACTCAGATTTTGGCACCACTGCCAATTGGATTTGCTGTTTTTTTGGTGCATTTGGCTACAATTCCAATTACAGGGACTGGTATTAACCCAGCTAGAAGTCTAGGTGCTGCTCTTATATACAACAAGGACCAAGCTTGGGATGACCATGTTAGTCTTTTTCATCTTTATTTTTCTTTTTCATTTCCATATTTTAATTTTATTTAGAACATTTTATTTGAATTATCAATTTAATCTCTAAAAGCATAAAATGCGACAATTTGTTCCTAAAACATAACAATTTTTTTAAGTAGTTCCAAAAATTTAACTTCATTGATTACGTTAGTCCTTTTGATTCGGTGAATTTGGTCACATTTTTTTTTTCAAAGTAACAAATGTGATAAGATTCCTAATGTTAGAAATCATTTTAAAATATCATTAAATTTACCAATTATCCTACTATCCGGTTTTAGATATTAAAGCAATGAGTTTATTTATTAACTCTTCAGTTTTTAGAGAAAATGAACCCTAGTACTTTGAGAACCGGAGATAAATGAACTAAAGTTTGATCATAAAGTGTTTCAGTCGAGCTTGAATTCATATTTTTTTGATCGATTTGACGTTCAATGAGATTCATTAACTAGTACTTGATTAATTTTATTTTTTGGAGAGCCATTACTACTTGATTAATTAATTATTTAGTATAGGTCTATTTTATCTATATAAATGTAGCCTATAATAATTGTGTCTCTTGTTAAGATGTTAACTCACATTACATTATTTTGGTGCAGTGGATTTTCTGGGTAGGGCCTTTCACTGGAGCAGCACTTGCAGCTCTTTACCATCAAATAGTCATCAGAGCCATGCCATCCCTTTCAAGTCAAAGTGA

Protein sequence

>MS.gene33486.t1

MENRDEDVVVGANKYRENQPIGTAAQSQDNEAKDYKEAPSAPLFEHGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVNKSSNKCSSVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTLFYIIMQCLGAICGAAVVKGFQPRQYERLGGGANTLNKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHVMDFLGRAFHWSSTCSSLPSNSHQSHAIPFKSK