AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052743


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052743.t1 MTR_4g415300 98.962 289 3 0 1 289 1 289 0.0 589
MS.gene052743.t1 MTR_8g098375 83.333 288 44 2 3 289 2 286 5.09e-179 495
MS.gene052743.t1 MTR_5g010150 84.028 288 42 2 3 289 2 286 2.44e-178 493
MS.gene052743.t1 MTR_5g082070 81.034 290 53 2 1 289 1 289 4.89e-175 485
MS.gene052743.t1 MTR_3g070210 80.345 290 55 2 1 289 1 289 1.52e-172 478
MS.gene052743.t1 MTR_4g415300 98.592 213 3 0 1 213 1 213 2.62e-156 435
MS.gene052743.t1 MTR_3g070210 79.087 263 53 2 1 262 1 262 3.12e-151 424
MS.gene052743.t1 MTR_7g101190 71.805 266 68 2 25 283 7 272 2.83e-138 392
MS.gene052743.t1 MTR_2g094270 67.037 270 82 1 26 288 10 279 1.18e-133 380
MS.gene052743.t1 MTR_3g118010 69.141 256 79 0 33 288 14 269 2.69e-131 374
MS.gene052743.t1 MTR_4g059390 65.428 269 87 1 26 288 9 277 1.84e-129 369
MS.gene052743.t1 MTR_8g098375 76.190 231 49 3 3 230 2 229 1.35e-124 355
MS.gene052743.t1 MTR_5g010150 81.604 212 35 2 3 213 2 210 2.56e-122 348
MS.gene052743.t1 MTR_2g094270 68.050 241 70 1 26 259 10 250 1.62e-118 341
MS.gene052743.t1 MTR_3g070210 77.103 214 47 2 1 213 1 213 1.17e-117 337
MS.gene052743.t1 MTR_1g095070 77.717 184 41 0 100 283 23 206 3.38e-105 305
MS.gene052743.t1 MTR_1g095070 78.125 160 35 0 100 259 23 182 2.17e-89 264
MS.gene052743.t1 MTR_4g059390 65.775 187 58 1 33 213 16 202 2.13e-84 252
MS.gene052743.t1 MTR_1g077540 36.596 235 123 8 56 281 21 238 5.68e-32 119
MS.gene052743.t1 MTR_6g069040 38.889 234 128 6 56 285 21 243 8.33e-32 119
MS.gene052743.t1 MTR_7g103030 35.965 228 131 6 56 280 21 236 3.41e-31 117
MS.gene052743.t1 MTR_1g115405 38.333 240 129 8 48 281 13 239 4.69e-31 116
MS.gene052743.t1 MTR_2g101370 34.764 233 138 5 51 280 15 236 2.08e-29 112
MS.gene052743.t1 MTR_4g063090 35.294 221 129 5 61 278 26 235 9.35e-29 110
MS.gene052743.t1 MTR_1g006490 35.526 228 125 7 56 278 19 229 4.55e-28 108
MS.gene052743.t1 MTR_8g013680 35.897 234 130 7 51 277 12 232 8.09e-28 108
MS.gene052743.t1 MTR_1g006590 36.522 230 120 9 56 278 19 229 4.20e-27 106
MS.gene052743.t1 MTR_5g012810 36.000 225 129 5 56 277 19 231 6.71e-27 105
MS.gene052743.t1 MTR_7g023350 36.207 232 129 7 56 281 21 239 2.39e-26 104
MS.gene052743.t1 MTR_2g060360 32.231 242 123 8 56 281 19 235 1.55e-21 91.7
MS.gene052743.t1 MTR_5g063930 27.200 250 166 5 29 277 10 244 7.12e-20 87.0
MS.gene052743.t1 MTR_8g087710 30.213 235 147 7 47 280 30 248 1.13e-19 86.7
MS.gene052743.t1 MTR_7g010650 30.085 236 144 9 54 287 35 251 1.25e-18 84.0
MS.gene052743.t1 MTR_4g075570 30.811 185 108 7 103 272 95 274 6.35e-18 82.8
MS.gene052743.t1 MTR_2g017660 28.270 237 155 6 34 270 17 238 6.42e-18 82.0
MS.gene052743.t1 MTR_2g017590 32.075 212 129 6 59 270 39 235 1.57e-17 80.9
MS.gene052743.t1 MTR_4g075590 27.126 247 160 8 48 282 29 267 1.79e-17 81.3
MS.gene052743.t1 MTR_2g017620 31.797 217 133 6 54 270 36 237 2.65e-17 80.1
MS.gene052743.t1 MTR_2g017620 31.797 217 133 6 54 270 22 223 2.72e-17 79.7
MS.gene052743.t1 MTR_8g087720 27.632 228 150 6 53 280 35 247 3.86e-17 79.7
MS.gene052743.t1 MTR_4g084880 27.027 222 149 5 59 280 38 246 1.15e-16 78.6
MS.gene052743.t1 MTR_4g006730 28.302 212 134 6 60 270 79 273 3.73e-16 77.4
MS.gene052743.t1 MTR_5g079570 27.586 232 153 6 59 289 39 256 7.07e-16 76.3
MS.gene052743.t1 MTR_2g104940 30.516 213 128 8 60 270 84 278 1.64e-15 75.9
MS.gene052743.t1 MTR_2g017610 29.717 212 134 5 59 270 41 237 3.81e-15 74.3
MS.gene052743.t1 MTR_3g008920 28.251 223 136 7 60 278 30 232 5.52e-15 73.6
MS.gene052743.t1 MTR_2g017570 29.245 212 135 5 59 270 41 237 1.04e-14 72.8
MS.gene052743.t1 MTR_1g097840 28.889 225 141 8 60 282 78 285 1.88e-13 69.7
MS.gene052743.t1 MTR_4g006730 29.609 179 111 5 93 270 22 186 3.84e-13 67.8
MS.gene052743.t1 MTR_4g006630 29.609 179 111 5 93 270 22 186 4.20e-13 67.4
MS.gene052743.t1 MTR_2g017620 32.530 166 100 4 105 270 3 156 7.92e-13 66.2
MS.gene052743.t1 MTR_1g070385 26.609 233 135 7 53 275 59 265 3.00e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052743.t1 AT4G00430 85.121 289 40 1 1 289 1 286 0.0 510
MS.gene052743.t1 AT2G45960 83.737 289 43 1 1 289 1 285 0.0 504
MS.gene052743.t1 AT3G61430 83.737 289 43 1 1 289 1 285 9.59e-177 489
MS.gene052743.t1 AT3G61430 83.737 289 43 1 1 289 1 285 9.59e-177 489
MS.gene052743.t1 AT1G01620 83.737 289 43 1 1 289 1 285 4.86e-176 487
MS.gene052743.t1 AT4G23400 83.737 289 44 1 1 289 1 286 1.03e-174 484
MS.gene052743.t1 AT2G45960 83.398 259 39 1 1 259 1 255 5.92e-162 451
MS.gene052743.t1 AT2G45960 83.398 259 39 1 1 259 1 255 1.45e-160 449
MS.gene052743.t1 AT1G01620 86.385 213 29 0 77 289 1 213 2.46e-137 387
MS.gene052743.t1 AT3G54820 70.611 262 71 1 33 288 15 276 6.06e-137 388
MS.gene052743.t1 AT3G53420 72.901 262 65 1 33 288 16 277 8.71e-137 388
MS.gene052743.t1 AT3G53420 72.901 262 65 1 33 288 16 277 8.71e-137 388
MS.gene052743.t1 AT2G37170 71.374 262 69 1 33 288 57 318 1.73e-136 389
MS.gene052743.t1 AT2G37170 71.374 262 69 1 33 288 14 275 4.06e-136 386
MS.gene052743.t1 AT4G35100 70.342 263 78 0 26 288 8 270 7.01e-136 385
MS.gene052743.t1 AT4G35100 70.342 263 78 0 26 288 8 270 7.01e-136 385
MS.gene052743.t1 AT2G16850 71.484 256 73 0 33 288 13 268 2.08e-135 384
MS.gene052743.t1 AT5G60660 69.466 262 74 1 33 288 16 277 4.47e-133 379
MS.gene052743.t1 AT2G39010 67.286 269 82 1 26 288 8 276 1.15e-132 377
MS.gene052743.t1 AT2G37180 69.847 262 73 1 33 288 14 275 1.25e-132 377
MS.gene052743.t1 AT4G00430 81.106 217 38 1 1 217 1 214 1.75e-128 364
MS.gene052743.t1 AT2G39010 63.918 194 64 1 26 213 8 201 6.58e-85 254
MS.gene052743.t1 AT1G73190 36.842 247 120 10 56 285 24 251 1.83e-32 120
MS.gene052743.t1 AT1G17810 35.714 238 126 6 56 281 24 246 1.32e-30 115
MS.gene052743.t1 AT5G47450 37.815 238 126 7 47 277 10 232 6.15e-30 114
MS.gene052743.t1 AT3G26520 35.193 233 127 7 56 280 22 238 2.41e-29 112
MS.gene052743.t1 AT4G01470 34.177 237 142 5 47 280 12 237 1.80e-28 110
MS.gene052743.t1 AT2G36830 34.498 229 132 6 56 279 21 236 2.21e-28 109
MS.gene052743.t1 AT3G16240 36.123 227 127 6 56 277 19 232 2.75e-28 109
MS.gene052743.t1 AT2G25810 34.286 245 145 7 43 285 6 236 2.96e-26 103
MS.gene052743.t1 AT4G17340 35.470 234 137 5 47 277 10 232 7.08e-26 103
MS.gene052743.t1 AT3G47440 33.607 244 117 8 56 281 23 239 3.71e-25 101
MS.gene052743.t1 AT4G19030 29.329 283 170 9 4 280 13 271 1.08e-20 90.1
MS.gene052743.t1 AT1G31885 29.811 265 157 9 17 270 3 249 3.47e-18 83.6
MS.gene052743.t1 AT4G18910 27.451 255 175 5 28 280 22 268 5.25e-18 82.4
MS.gene052743.t1 AT2G34390 27.500 280 180 8 6 280 2 263 1.63e-17 81.3
MS.gene052743.t1 AT5G37820 27.778 216 131 6 59 269 46 241 6.95e-15 73.6
MS.gene052743.t1 AT2G34390 29.333 225 144 6 59 280 9 221 7.83e-15 72.8
MS.gene052743.t1 AT5G37820 27.778 216 131 6 59 269 82 277 8.06e-15 73.9
MS.gene052743.t1 AT1G31885 30.500 200 116 6 79 270 11 195 3.71e-14 71.2
MS.gene052743.t1 AT4G10380 27.854 219 140 7 53 270 75 276 1.37e-12 67.4
MS.gene052743.t1 AT5G37810 26.126 222 149 5 59 280 46 252 2.53e-12 66.2
MS.gene052743.t1 AT3G06100 29.289 239 140 9 56 289 46 260 3.05e-12 65.9
MS.gene052743.t1 AT3G06100 29.237 236 138 9 59 289 1 212 1.93e-11 63.2

Find 66 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGGATTGCTTGGGCTTT+TGG 0.139339 4.4:+85344911 MS.gene052743:CDS
GGTGCTTCTTTATAGTCTTT+AGG 0.277820 4.4:-85344731 None:intergenic
TTAATACCAGTCCCTGTAAT+TGG 0.293171 4.4:-85346188 None:intergenic
TGTGGTGCTGCTGTTGTTAA+GGG 0.295039 4.4:+85345503 MS.gene052743:CDS
TGTCATCATGGTCTTTCTAT+AGG 0.314589 4.4:+85344783 MS.gene052743:CDS
TTGGCTACAATTCCAATTAC+AGG 0.327149 4.4:+85346176 MS.gene052743:CDS
TTGTGGTGCTGCTGTTGTTA+AGG 0.328028 4.4:+85345502 MS.gene052743:CDS
ATTAACCCAGCAGTGACATT+TGG 0.351379 4.4:+85345407 MS.gene052743:CDS
TGCTCCTCAGTTGGTGTTCA+AGG 0.355183 4.4:+85344893 MS.gene052743:CDS
CTACATAATTATGCAATGTT+TGG 0.357596 4.4:+85345472 MS.gene052743:CDS
TACATAATTATGCAATGTTT+GGG 0.360536 4.4:+85345473 MS.gene052743:CDS
GCTCTTGTTTATTGTACTGC+TGG 0.363023 4.4:+85344947 MS.gene052743:CDS
AACTCTCCATGCTCAAATAA+AGG 0.367666 4.4:-85344761 None:intergenic
AACTGAGGAGCATTTGTTAG+AGG 0.373816 4.4:-85344882 None:intergenic
GTCATCATGGTCTTTCTATA+GGG 0.378391 4.4:+85344784 MS.gene052743:CDS
TTGGTGTTCAAGGGATTGCT+TGG 0.385841 4.4:+85344903 MS.gene052743:CDS
TATTGTACTGCTGGTATCTC+AGG 0.389148 4.4:+85344956 MS.gene052743:CDS
TGAGTCTCTTGCATTTCGTT+TGG 0.397032 4.4:-85345663 None:intergenic
GATTGAGCAGCAGTTCCTAT+TGG 0.401413 4.4:-85344695 None:intergenic
TTAACCCAGCAGTGACATTT+GGG 0.404206 4.4:+85345408 MS.gene052743:CDS
GGCAGGGATTGCTGAGTTTG+TGG 0.419906 4.4:+85344805 MS.gene052743:CDS
GGTGCCAACACTCTCAATAA+AGG 0.420596 4.4:+85345560 MS.gene052743:CDS
TTCTGGGTAGGGCCTTTCAC+TGG 0.421787 4.4:+85346895 MS.gene052743:CDS
CAATGTTTGGGTGCTATTTG+TGG 0.422792 4.4:+85345485 MS.gene052743:CDS
TATAGAGAAAACCAACCAAT+AGG 0.431779 4.4:+85344680 MS.gene052743:CDS
TGGTGTTCAAGGGATTGCTT+GGG 0.441333 4.4:+85344904 MS.gene052743:CDS
AAAAGCCCAAATGTCACTGC+TGG 0.446487 4.4:-85345413 None:intergenic
TGCCTCACTTTGACTTGAAA+GGG 0.453627 4.4:-85346963 None:intergenic
TTGCCTCACTTTGACTTGAA+AGG 0.460204 4.4:-85346964 None:intergenic
TCATGGTCTTTCTATAGGGC+AGG 0.465014 4.4:+85344788 MS.gene052743:CDS
AGCTCCAAGTCCATCACCTA+TGG 0.471965 4.4:-85345588 None:intergenic
GAGCAGCAGTTCCTATTGGT+TGG 0.490667 4.4:-85344691 None:intergenic
TATACAACAAGGACCAAGCT+TGG 0.508349 4.4:+85346240 MS.gene052743:CDS
TACTCCATAGGTGATGGACT+TGG 0.512860 4.4:+85345584 MS.gene052743:CDS
GCAGCACCTAGACTTCTAGC+TGG 0.513663 4.4:-85346212 None:intergenic
GTCTCTCATATTGACGTGGT+TGG 0.520234 4.4:-85345529 None:intergenic
GCAAGTGCTGCTCCAGTGAA+AGG 0.524235 4.4:-85346907 None:intergenic
ACAATTCCAATTACAGGGAC+TGG 0.531107 4.4:+85346182 MS.gene052743:CDS
TGGCTCTGATGACTATTTGA+TGG 0.539363 4.4:-85346939 None:intergenic
AGAGATGAAGATGTAAGAGT+AGG 0.539683 4.4:+85344647 MS.gene052743:CDS
ATTAACCCAGCTAGAAGTCT+AGG 0.540082 4.4:+85346206 MS.gene052743:CDS
GGACTTGGAGCTGAGATTGT+TGG 0.540230 4.4:+85345599 MS.gene052743:CDS
GCTCCTCAGTTGGTGTTCAA+GGG 0.540750 4.4:+85344894 MS.gene052743:CDS
CACGCAAGCTATCTCTAACT+AGG 0.540778 4.4:+85345441 MS.gene052743:CDS
GTAACCTTTATTGAGAGTGT+TGG 0.540829 4.4:-85345564 None:intergenic
ATACAACAAGGACCAAGCTT+GGG 0.545013 4.4:+85346241 MS.gene052743:CDS
TGGCTACAATTCCAATTACA+GGG 0.551529 4.4:+85346177 MS.gene052743:CDS
TGCTCAAATAAAGGTGCTGA+AGG 0.551644 4.4:-85344752 None:intergenic
AAAGGTTACTCCATAGGTGA+TGG 0.553430 4.4:+85345578 MS.gene052743:CDS
CTCAATAAAGGTTACTCCAT+AGG 0.557582 4.4:+85345572 MS.gene052743:CDS
TAACATGGTCATCCCAAGCT+TGG 0.558282 4.4:-85346253 None:intergenic
AGCATGGAGAGTTGTCATCA+TGG 0.558907 4.4:+85344771 MS.gene052743:CDS
TCACTTTGACTTGAAAGGGA+TGG 0.562832 4.4:-85346959 None:intergenic
CATGGTCTTTCTATAGGGCA+GGG 0.564902 4.4:+85344789 MS.gene052743:CDS
TCAGCACCTTTATTTGAGCA+TGG 0.566089 4.4:+85344755 MS.gene052743:CDS
CCACGTCAATATGAGAGACT+TGG 0.574053 4.4:+85345533 MS.gene052743:CDS
TCTAACAAATGCTCCTCAGT+TGG 0.578434 4.4:+85344884 MS.gene052743:CDS
AAAGCCCAAATGTCACTGCT+GGG 0.601769 4.4:-85345412 None:intergenic
CGTCAATATGAGAGACTTGG+TGG 0.601958 4.4:+85345536 MS.gene052743:CDS
ACAGCAAATCCAATTGGCAG+TGG 0.605076 4.4:-85346140 None:intergenic
CAGCACCTAGACTTCTAGCT+GGG 0.629681 4.4:-85346211 None:intergenic
ATCCCTTTCAAGTCAAAGTG+AGG 0.643751 4.4:+85346961 MS.gene052743:CDS
AATCCCTTGAACACCAACTG+AGG 0.657135 4.4:-85344897 None:intergenic
CCAAGTCTCTCATATTGACG+TGG 0.671854 4.4:-85345533 None:intergenic
TGCTGCTCTTGTATACAACA+AGG 0.677621 4.4:+85346229 MS.gene052743:CDS
CAATATGAGAGACTTGGTGG+TGG 0.725332 4.4:+85345539 MS.gene052743:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATATTTTTTA+AGG - chr4.4:85345078-85345097 None:intergenic 0.0%
!!! AATCAATGAAATTAAATTTT+TGG - chr4.4:85346420-85346439 None:intergenic 10.0%
!!! ACTTGATTAATTTTATTTTT+TGG + chr4.4:85346743-85346762 MS.gene052743:intron 10.0%
!!! ATTTTTGTTTCTTTATATAA+CGG + chr4.4:85344832-85344851 MS.gene052743:CDS 10.0%
!!! TAAAAAAATTGTTATGTTTT+AGG - chr4.4:85346390-85346409 None:intergenic 10.0%
!! ATTAATTAATCAAGTAGTAA+TGG - chr4.4:85346773-85346792 None:intergenic 15.0%
!! TATGATATATTAGTAAGATT+TGG - chr4.4:85346000-85346019 None:intergenic 15.0%
!! TTAAAATGATTTCTAACATT+AGG - chr4.4:85346512-85346531 None:intergenic 15.0%
!!! AGTGAATTAACATTTTTTTT+TGG - chr4.4:85345852-85345871 None:intergenic 15.0%
!!! ATGAATGAACATTTTTATTT+AGG - chr4.4:85345703-85345722 None:intergenic 15.0%
!!! GTGAATTAACATTTTTTTTT+GGG - chr4.4:85345851-85345870 None:intergenic 15.0%
!! AGAAAGATTTAATATACTGT+AGG - chr4.4:85345108-85345127 None:intergenic 20.0%
!! ATGATTCATAACTATTGAAA+TGG + chr4.4:85346051-85346070 MS.gene052743:intron 20.0%
!! GAAAGATTTAATATACTGTA+GGG - chr4.4:85345107-85345126 None:intergenic 20.0%
!! TACATAATTATGCAATGTTT+GGG + chr4.4:85345473-85345492 MS.gene052743:CDS 20.0%
!!! TAACTCACATTACATTATTT+TGG + chr4.4:85346861-85346880 MS.gene052743:intron 20.0%
! AAAGATGAAAAAGACTAACA+TGG - chr4.4:85346271-85346290 None:intergenic 25.0%
! ACAAGAGACACAATTATTAT+AGG - chr4.4:85346833-85346852 None:intergenic 25.0%
! CTACATAATTATGCAATGTT+TGG + chr4.4:85345472-85345491 MS.gene052743:CDS 25.0%
! GATATGTTAGCATAAATCTA+AGG - chr4.4:85345357-85345376 None:intergenic 25.0%
! TTACCAATTATCCTACTATA+CGG + chr4.4:85346545-85346564 MS.gene052743:intron 25.0%
!! AACTTTAGTTCATTTATCTC+CGG - chr4.4:85346647-85346666 None:intergenic 25.0%
!! AATATCTAAAACCGTATAGT+AGG - chr4.4:85346559-85346578 None:intergenic 25.0%
!! CATTTGAATTACTCAGATTT+TGG + chr4.4:85346115-85346134 MS.gene052743:intron 25.0%
!! GGCTAGAATTTTTCTTTTTA+AGG - chr4.4:85345814-85345833 None:intergenic 25.0%
!!! ACATTTTTATTTAGGCTTAC+AGG - chr4.4:85345695-85345714 None:intergenic 25.0%
!!! ATAACGGTTTTAACTGTTAT+GGG + chr4.4:85344848-85344867 MS.gene052743:CDS 25.0%
!!! TATAACGGTTTTAACTGTTA+TGG + chr4.4:85344847-85344866 MS.gene052743:CDS 25.0%
!!! TTTTAAGGACTAAATTGAAG+CGG - chr4.4:85345063-85345082 None:intergenic 25.0%
AAAAAGACAGCAAATCCAAT+TGG - chr4.4:85346149-85346168 None:intergenic 30.0%
AAACCGTATAGTAGGATAAT+TGG - chr4.4:85346551-85346570 None:intergenic 30.0%
ACATCGCATAATATATGTAG+GGG + chr4.4:85345754-85345773 MS.gene052743:intron 30.0%
GACATCGCATAATATATGTA+GGG + chr4.4:85345753-85345772 MS.gene052743:intron 30.0%
TATAGAGAAAACCAACCAAT+AGG + chr4.4:85344680-85344699 MS.gene052743:CDS 30.0%
TTTAAGGACTAAATTGAAGC+GGG - chr4.4:85345062-85345081 None:intergenic 30.0%
! ACGTGTCTTTTTACTAATGT+AGG + chr4.4:85345377-85345396 MS.gene052743:intron 30.0%
! GCACATATTGATTGAACAAT+TGG - chr4.4:85344995-85345014 None:intergenic 30.0%
! TAAGATTTGGACTTCTAGTT+TGG - chr4.4:85345987-85346006 None:intergenic 30.0%
! TAGAAGTCCAAACTTTTTGA+AGG - chr4.4:85345264-85345283 None:intergenic 30.0%
! TGAACACTTTGAAAAGTGAA+GGG - chr4.4:85345328-85345347 None:intergenic 30.0%
! TGTCTTTTTACTAATGTAGG+TGG + chr4.4:85345380-85345399 MS.gene052743:intron 30.0%
! TTGAACACTTTGAAAAGTGA+AGG - chr4.4:85345329-85345348 None:intergenic 30.0%
! TTGGTAAGTTGAGTTAAAGT+CGG - chr4.4:85345169-85345188 None:intergenic 30.0%
! TTTTGTGTAGTATCATTGCA+TGG - chr4.4:85345945-85345964 None:intergenic 30.0%
!! CTTTTTAAGGAGAATAAGCA+GGG - chr4.4:85345801-85345820 None:intergenic 30.0%
!! TCTTTTTAAGGAGAATAAGC+AGG - chr4.4:85345802-85345821 None:intergenic 30.0%
!! TTACGTTAGTCCTTTTGATT+CGG + chr4.4:85346438-85346457 MS.gene052743:intron 30.0%
!!! AATTGGATTTGCTGTCTTTT+TGG + chr4.4:85346148-85346167 MS.gene052743:CDS 30.0%
!!! ATTACATTATTTTGGTGCAG+TGG + chr4.4:85346869-85346888 MS.gene052743:intron 30.0%
AACTCTCCATGCTCAAATAA+AGG - chr4.4:85344764-85344783 None:intergenic 35.0%
AACTTACCAATGTCAAGACT+CGG + chr4.4:85345179-85345198 MS.gene052743:intron 35.0%
ACCAAATTCACCGAATCAAA+AGG - chr4.4:85346451-85346470 None:intergenic 35.0%
AGAGATGAAGATGTAAGAGT+AGG + chr4.4:85344647-85344666 MS.gene052743:CDS 35.0%
ATTCTAGCCACTAAGCTATT+TGG + chr4.4:85345825-85345844 MS.gene052743:intron 35.0%
CTCAATAAAGGTTACTCCAT+AGG + chr4.4:85345572-85345591 MS.gene052743:CDS 35.0%
GGACATCGCATAATATATGT+AGG + chr4.4:85345752-85345771 MS.gene052743:intron 35.0%
GGACTTGTCAATCTTGATAA+CGG + chr4.4:85345200-85345219 MS.gene052743:intron 35.0%
GGTGCTTCTTTATAGTCTTT+AGG - chr4.4:85344734-85344753 None:intergenic 35.0%
GTCATCATGGTCTTTCTATA+GGG + chr4.4:85344784-85344803 MS.gene052743:CDS 35.0%
TGGCTACAATTCCAATTACA+GGG + chr4.4:85346177-85346196 MS.gene052743:CDS 35.0%
TGTCATCATGGTCTTTCTAT+AGG + chr4.4:85344783-85344802 MS.gene052743:CDS 35.0%
TTAATACCAGTCCCTGTAAT+TGG - chr4.4:85346191-85346210 None:intergenic 35.0%
TTCCATGCCTTCAAAAAGTT+TGG + chr4.4:85345254-85345273 MS.gene052743:intron 35.0%
TTGGCTACAATTCCAATTAC+AGG + chr4.4:85346176-85346195 MS.gene052743:CDS 35.0%
TTTGATACAGTCACCCAATT+TGG - chr4.4:85345227-85345246 None:intergenic 35.0%
! GTAACCTTTATTGAGAGTGT+TGG - chr4.4:85345567-85345586 None:intergenic 35.0%
!! ATCTTGATAACGGTCCAAAT+TGG + chr4.4:85345210-85345229 MS.gene052743:intron 35.0%
!! TCTTGATAACGGTCCAAATT+GGG + chr4.4:85345211-85345230 MS.gene052743:intron 35.0%
!!! TCCTTTTGATTCGGTGAATT+TGG + chr4.4:85346447-85346466 MS.gene052743:intron 35.0%
AAAGGTTACTCCATAGGTGA+TGG + chr4.4:85345578-85345597 MS.gene052743:CDS 40.0%
ACAATTCCAATTACAGGGAC+TGG + chr4.4:85346182-85346201 MS.gene052743:CDS 40.0%
ATACAACAAGGACCAAGCTT+GGG + chr4.4:85346241-85346260 MS.gene052743:CDS 40.0%
ATTAACCCAGCAGTGACATT+TGG + chr4.4:85345407-85345426 MS.gene052743:CDS 40.0%
ATTAACCCAGCTAGAAGTCT+AGG + chr4.4:85346206-85346225 MS.gene052743:CDS 40.0%
CATAATATATGTAGGGGTCG+GGG + chr4.4:85345760-85345779 MS.gene052743:intron 40.0%
CGCATAATATATGTAGGGGT+CGG + chr4.4:85345758-85345777 MS.gene052743:intron 40.0%
GCATAATATATGTAGGGGTC+GGG + chr4.4:85345759-85345778 MS.gene052743:intron 40.0%
GTTGAGTTAAAGTCGGACAT+TGG - chr4.4:85345162-85345181 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+CGG - chr4.4:85345731-85345750 None:intergenic 40.0%
TATACAACAAGGACCAAGCT+TGG + chr4.4:85346240-85346259 MS.gene052743:CDS 40.0%
TATTGTACTGCTGGTATCTC+AGG + chr4.4:85344956-85344975 MS.gene052743:CDS 40.0%
TCTAACAAATGCTCCTCAGT+TGG + chr4.4:85344884-85344903 MS.gene052743:CDS 40.0%
TGAAGGGTGATTACTCTACT+CGG - chr4.4:85345312-85345331 None:intergenic 40.0%
TGAGTCTCTTGCATTTCGTT+TGG - chr4.4:85345666-85345685 None:intergenic 40.0%
TGCTGCTCTTGTATACAACA+AGG + chr4.4:85346229-85346248 MS.gene052743:CDS 40.0%
TTAACCCAGCAGTGACATTT+GGG + chr4.4:85345408-85345427 MS.gene052743:CDS 40.0%
! AACCCTAGTACTTTGAGAAC+CGG + chr4.4:85346625-85346644 MS.gene052743:intron 40.0%
! AGTGACATTTGGGCTTTTCT+TGG + chr4.4:85345418-85345437 MS.gene052743:CDS 40.0%
! GCTCTTGTTTATTGTACTGC+TGG + chr4.4:85344947-85344966 MS.gene052743:CDS 40.0%
! TCAGCACCTTTATTTGAGCA+TGG + chr4.4:85344755-85344774 MS.gene052743:CDS 40.0%
! TGAGCTTAACTCAGTTGGTA+GGG + chr4.4:85345731-85345750 MS.gene052743:intron 40.0%
! TTTTGGGCCAAATAGCTTAG+TGG - chr4.4:85345835-85345854 None:intergenic 40.0%
!! AACTGAGGAGCATTTGTTAG+AGG - chr4.4:85344885-85344904 None:intergenic 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG + chr4.4:85345485-85345504 MS.gene052743:CDS 40.0%
!! GTCCAAACTTTTTGAAGGCA+TGG - chr4.4:85345259-85345278 None:intergenic 40.0%
!! TCACTTTGACTTGAAAGGGA+TGG - chr4.4:85346962-85346981 None:intergenic 40.0%
!! TGCTCAAATAAAGGTGCTGA+AGG - chr4.4:85344755-85344774 None:intergenic 40.0%
!! TGCTGTCTTTTTGGTGCATT+TGG + chr4.4:85346157-85346176 MS.gene052743:CDS 40.0%
!! TGGCTCTGATGACTATTTGA+TGG - chr4.4:85346942-85346961 None:intergenic 40.0%
!! TTTGGTGCAGTGGATTTTCT+GGG + chr4.4:85346879-85346898 MS.gene052743:intron 40.0%
!! TTTTGGTGCAGTGGATTTTC+TGG + chr4.4:85346878-85346897 MS.gene052743:intron 40.0%
AAAAGCCCAAATGTCACTGC+TGG - chr4.4:85345416-85345435 None:intergenic 45.0%
AAAGCCCAAATGTCACTGCT+GGG - chr4.4:85345415-85345434 None:intergenic 45.0%
AATCCCTTGAACACCAACTG+AGG - chr4.4:85344900-85344919 None:intergenic 45.0%
ACAAGTCCGAGTCTTGACAT+TGG - chr4.4:85345188-85345207 None:intergenic 45.0%
ACAGCAAATCCAATTGGCAG+TGG - chr4.4:85346143-85346162 None:intergenic 45.0%
AGCATGGAGAGTTGTCATCA+TGG + chr4.4:85344771-85344790 MS.gene052743:CDS 45.0%
CACGCAAGCTATCTCTAACT+AGG + chr4.4:85345441-85345460 MS.gene052743:CDS 45.0%
CATGGTCTTTCTATAGGGCA+GGG + chr4.4:85344789-85344808 MS.gene052743:CDS 45.0%
CCAAGTCTCTCATATTGACG+TGG - chr4.4:85345536-85345555 None:intergenic 45.0%
CCACGTCAATATGAGAGACT+TGG + chr4.4:85345533-85345552 MS.gene052743:CDS 45.0%
CGTCAATATGAGAGACTTGG+TGG + chr4.4:85345536-85345555 MS.gene052743:CDS 45.0%
GAGTTAAAGTCGGACATTGG+TGG - chr4.4:85345159-85345178 None:intergenic 45.0%
GATTGAGCAGCAGTTCCTAT+TGG - chr4.4:85344698-85344717 None:intergenic 45.0%
GGTGCCAACACTCTCAATAA+AGG + chr4.4:85345560-85345579 MS.gene052743:CDS 45.0%
GTCTCTCATATTGACGTGGT+TGG - chr4.4:85345532-85345551 None:intergenic 45.0%
GTGAGCTTAACTCAGTTGGT+AGG + chr4.4:85345730-85345749 MS.gene052743:intron 45.0%
TAACATGGTCATCCCAAGCT+TGG - chr4.4:85346256-85346275 None:intergenic 45.0%
TCATGGTCTTTCTATAGGGC+AGG + chr4.4:85344788-85344807 MS.gene052743:CDS 45.0%
TGGTGTTCAAGGGATTGCTT+GGG + chr4.4:85344904-85344923 MS.gene052743:CDS 45.0%
! CTCCGGTTCTCAAAGTACTA+GGG - chr4.4:85346630-85346649 None:intergenic 45.0%
! TCTCCGGTTCTCAAAGTACT+AGG - chr4.4:85346631-85346650 None:intergenic 45.0%
! TTGGTGTTCAAGGGATTGCT+TGG + chr4.4:85344903-85344922 MS.gene052743:CDS 45.0%
!! ATTTTGGCACCACTGCCAAT+TGG + chr4.4:85346131-85346150 MS.gene052743:CDS 45.0%
!! CAATATGAGAGACTTGGTGG+TGG + chr4.4:85345539-85345558 MS.gene052743:CDS 45.0%
!! TACTCCATAGGTGATGGACT+TGG + chr4.4:85345584-85345603 MS.gene052743:CDS 45.0%
!! TGCAGTGGATTTTCTGGGTA+GGG + chr4.4:85346884-85346903 MS.gene052743:intron 45.0%
!! TGTGGTGCTGCTGTTGTTAA+GGG + chr4.4:85345503-85345522 MS.gene052743:CDS 45.0%
!! TTGTGGTGCTGCTGTTGTTA+AGG + chr4.4:85345502-85345521 MS.gene052743:CDS 45.0%
!! ATTAATTAATTATTTAGTAT+AGG + chr4.4:85346783-85346802 MS.gene052743:intron 5.0%
!! TAATTATATATTTAACATAA+AGG - chr4.4:85345885-85345904 None:intergenic 5.0%
!! TTCTAAATAAAATTAAATTA+TGG - chr4.4:85346311-85346330 None:intergenic 5.0%
AGCTCCAAGTCCATCACCTA+TGG - chr4.4:85345591-85345610 None:intergenic 50.0%
CACCGTGAGCTTAACTCAGT+TGG + chr4.4:85345726-85345745 MS.gene052743:intron 50.0%
GAGCAGCAGTTCCTATTGGT+TGG - chr4.4:85344694-85344713 None:intergenic 50.0%
GGACTTGGAGCTGAGATTGT+TGG + chr4.4:85345599-85345618 MS.gene052743:CDS 50.0%
! CAAGGGATTGCTTGGGCTTT+TGG + chr4.4:85344911-85344930 MS.gene052743:CDS 50.0%
! CAGCACCTAGACTTCTAGCT+GGG - chr4.4:85346214-85346233 None:intergenic 50.0%
! GAGAATAAGCAGGGTGTTCG+AGG - chr4.4:85345792-85345811 None:intergenic 50.0%
! GCTCCTCAGTTGGTGTTCAA+GGG + chr4.4:85344894-85344913 MS.gene052743:CDS 50.0%
! TGCTCCTCAGTTGGTGTTCA+AGG + chr4.4:85344893-85344912 MS.gene052743:CDS 50.0%
!! GTGCAGTGGATTTTCTGGGT+AGG + chr4.4:85346883-85346902 MS.gene052743:intron 50.0%
GCAGCACCTAGACTTCTAGC+TGG - chr4.4:85346215-85346234 None:intergenic 55.0%
GGCAGGGATTGCTGAGTTTG+TGG + chr4.4:85344805-85344824 MS.gene052743:CDS 55.0%
TTCTGGGTAGGGCCTTTCAC+TGG + chr4.4:85346895-85346914 MS.gene052743:CDS 55.0%
! GCAAGTGCTGCTCCAGTGAA+AGG - chr4.4:85346910-85346929 None:intergenic 55.0%
! GGGATTGCTTGGGCTTTTGG+TGG + chr4.4:85344914-85344933 MS.gene052743:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 85344638 85346981 85344638 ID=MS.gene052743
chr4.4 mRNA 85344638 85346981 85344638 ID=MS.gene052743.t1;Parent=MS.gene052743
chr4.4 exon 85344638 85344977 85344638 ID=MS.gene052743.t1.exon1;Parent=MS.gene052743.t1
chr4.4 CDS 85344638 85344977 85344638 ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1
chr4.4 exon 85345399 85345694 85345399 ID=MS.gene052743.t1.exon2;Parent=MS.gene052743.t1
chr4.4 CDS 85345399 85345694 85345399 ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1
chr4.4 exon 85346131 85346271 85346131 ID=MS.gene052743.t1.exon3;Parent=MS.gene052743.t1
chr4.4 CDS 85346131 85346271 85346131 ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1
chr4.4 exon 85346889 85346981 85346889 ID=MS.gene052743.t1.exon4;Parent=MS.gene052743.t1
chr4.4 CDS 85346889 85346981 85346889 ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1
Gene Sequence

>MS.gene052743

ATGGAGAATAGAGATGAAGATGTAAGAGTAGGAGCAAACAAGTATAGAGAAAACCAACCAATAGGAACTGCTGCTCAATCTCAAGACAATGATCCTAAAGACTATAAAGAAGCACCTTCAGCACCTTTATTTGAGCATGGAGAGTTGTCATCATGGTCTTTCTATAGGGCAGGGATTGCTGAGTTTGTGGCTACATTTTTGTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTGAATAAATCCTCTAACAAATGCTCCTCAGTTGGTGTTCAAGGGATTGCTTGGGCTTTTGGTGGAATGATTTTTGCTCTTGTTTATTGTACTGCTGGTATCTCAGGTAAAATTCACATACCAATTGTTCAATCAATATGTGCAAAAATAATACTAGTACATGCTAAATTTAAATTTCGAAGTATCACCCGCTTCAATTTAGTCCTTAAAAAATATAAAAATAAAAATAAAGCCCTACAGTATATTAAATCTTTCTTTTCGTTCGTTAAAGAATAATTATTGCACCACCAATGTCCGACTTTAACTCAACTTACCAATGTCAAGACTCGGACTTGTCAATCTTGATAACGGTCCAAATTGGGTGACTGTATCAAATGTGTGATTCCATGCCTTCAAAAAGTTTGGACTTCTAGACGATGCAGCAACTAAAATTAATTCCGAGTAGAGTAATCACCCTTCACTTTTCAAAGTGTTCAATAAAACCTTAGATTTATGCTAACATATCACGTGTCTTTTTACTAATGTAGGTGGTCACATTAACCCAGCAGTGACATTTGGGCTTTTCTTGGCACGCAAGCTATCTCTAACTAGGACACTGTTCTACATAATTATGCAATGTTTGGGTGCTATTTGTGGTGCTGCTGTTGTTAAGGGCTTCCAACCACGTCAATATGAGAGACTTGGTGGTGGTGCCAACACTCTCAATAAAGGTTACTCCATAGGTGATGGACTTGGAGCTGAGATTGTTGGTACATTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATGCCAAACGAAATGCAAGAGACTCACATGTTCCTGTAAGCCTAAATAAAAATGTTCATTCATTTTCACCGTGAGCTTAACTCAGTTGGTAGGGACATCGCATAATATATGTAGGGGTCGGGGTTCGAACCTCGAACACCCTGCTTATTCTCCTTAAAAAGAAAAATTCTAGCCACTAAGCTATTTGGCCCAAAAAAAAATGTTAATTCACTAATAGATCATCCTTTATGTTAAATATATAATTAGATAAAATTCACAACTATTGAAAAATTAGATTAATTGCCATGCAATGATACTACACAAAAACTTTACATATTCATTAAACCAAACTAGAAGTCCAAATCTTACTAATATATCATACACTACATCTATATTAAAATTTCATTATTATATGATTCATAACTATTGAAATGGATACATGTTATATTATGTTGATAATTTTATTTGATTATAAGCATTTGAATTACTCAGATTTTGGCACCACTGCCAATTGGATTTGCTGTCTTTTTGGTGCATTTGGCTACAATTCCAATTACAGGGACTGGTATTAACCCAGCTAGAAGTCTAGGTGCTGCTCTTGTATACAACAAGGACCAAGCTTGGGATGACCATGTTAGTCTTTTTCATCTTTATTTTTCTTTTTCATTTCCATAATTTAATTTTATTTAGAACATTTTATTTGAATTATCAATTTAATCTCTAAAATCATAAAATGCGACAATTTGTTCCTAAAACATAACAATTTTTTTAAGTAGTTCCAAAAATTTAATTTCATTGATTACGTTAGTCCTTTTGATTCGGTGAATTTGGTCACATTTTTTTTTTCAAAGTAACAAATGTGATAAGATTCCTAATGTTAGAAATCATTTTAAAATATCATTAAATTTACCAATTATCCTACTATACGGTTTTAGATATTAAAGCAATGAGTTTATTTATTAACTCTTCAGTTTTTAGAGAAAATGAACCCTAGTACTTTGAGAACCGGAGATAAATGAACTAAAGTTTGATCATAAAGTGTTTCAGTCGAGCTTGAATTCATATTTTTTTGATCGATTTGACGTTCAATGAGATTCATTAACTACTTGATTAATTTTATTTTTTGGAGAGCCATTACTACTTGATTAATTAATTATTTAGTATAGGTCTATTTTATCTATATACATGTAGCCTATAATAATTGTGTCTCTTGTTAAGATGTTAACTCACATTACATTATTTTGGTGCAGTGGATTTTCTGGGTAGGGCCTTTCACTGGAGCAGCACTTGCAGCTCTTTACCATCAAATAGTCATCAGAGCCATCCCTTTCAAGTCAAAGTGA

Protein sequence

>MS.gene052743.t1

MENRDEDVRVGANKYRENQPIGTAAQSQDNDPKDYKEAPSAPLFEHGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVNKSSNKCSSVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTLFYIIMQCLGAICGAAVVKGFQPRQYERLGGGANTLNKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNKDQAWDDHWIFWVGPFTGAALAALYHQIVIRAIPFKSK