Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052743.t1 | XP_013455159.1 | 99 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 1.40E-160 | 575.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052743.t1 | Q39196 | 85.1 | 289 | 40 | 1 | 1 | 289 | 1 | 286 | 2.4e-140 | 499.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052743.t1 | A0A072UGL5 | 99.0 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 1.0e-160 | 575.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052743 | MS.gene33486 | 0.813381 | 2.63E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052743.t1 | MTR_4g415300 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 589 |
MS.gene052743.t1 | MTR_8g098375 | 83.333 | 288 | 44 | 2 | 3 | 289 | 2 | 286 | 5.09e-179 | 495 |
MS.gene052743.t1 | MTR_5g010150 | 84.028 | 288 | 42 | 2 | 3 | 289 | 2 | 286 | 2.44e-178 | 493 |
MS.gene052743.t1 | MTR_5g082070 | 81.034 | 290 | 53 | 2 | 1 | 289 | 1 | 289 | 4.89e-175 | 485 |
MS.gene052743.t1 | MTR_3g070210 | 80.345 | 290 | 55 | 2 | 1 | 289 | 1 | 289 | 1.52e-172 | 478 |
MS.gene052743.t1 | MTR_4g415300 | 98.592 | 213 | 3 | 0 | 1 | 213 | 1 | 213 | 2.62e-156 | 435 |
MS.gene052743.t1 | MTR_3g070210 | 79.087 | 263 | 53 | 2 | 1 | 262 | 1 | 262 | 3.12e-151 | 424 |
MS.gene052743.t1 | MTR_7g101190 | 71.805 | 266 | 68 | 2 | 25 | 283 | 7 | 272 | 2.83e-138 | 392 |
MS.gene052743.t1 | MTR_2g094270 | 67.037 | 270 | 82 | 1 | 26 | 288 | 10 | 279 | 1.18e-133 | 380 |
MS.gene052743.t1 | MTR_3g118010 | 69.141 | 256 | 79 | 0 | 33 | 288 | 14 | 269 | 2.69e-131 | 374 |
MS.gene052743.t1 | MTR_4g059390 | 65.428 | 269 | 87 | 1 | 26 | 288 | 9 | 277 | 1.84e-129 | 369 |
MS.gene052743.t1 | MTR_8g098375 | 76.190 | 231 | 49 | 3 | 3 | 230 | 2 | 229 | 1.35e-124 | 355 |
MS.gene052743.t1 | MTR_5g010150 | 81.604 | 212 | 35 | 2 | 3 | 213 | 2 | 210 | 2.56e-122 | 348 |
MS.gene052743.t1 | MTR_2g094270 | 68.050 | 241 | 70 | 1 | 26 | 259 | 10 | 250 | 1.62e-118 | 341 |
MS.gene052743.t1 | MTR_3g070210 | 77.103 | 214 | 47 | 2 | 1 | 213 | 1 | 213 | 1.17e-117 | 337 |
MS.gene052743.t1 | MTR_1g095070 | 77.717 | 184 | 41 | 0 | 100 | 283 | 23 | 206 | 3.38e-105 | 305 |
MS.gene052743.t1 | MTR_1g095070 | 78.125 | 160 | 35 | 0 | 100 | 259 | 23 | 182 | 2.17e-89 | 264 |
MS.gene052743.t1 | MTR_4g059390 | 65.775 | 187 | 58 | 1 | 33 | 213 | 16 | 202 | 2.13e-84 | 252 |
MS.gene052743.t1 | MTR_1g077540 | 36.596 | 235 | 123 | 8 | 56 | 281 | 21 | 238 | 5.68e-32 | 119 |
MS.gene052743.t1 | MTR_6g069040 | 38.889 | 234 | 128 | 6 | 56 | 285 | 21 | 243 | 8.33e-32 | 119 |
MS.gene052743.t1 | MTR_7g103030 | 35.965 | 228 | 131 | 6 | 56 | 280 | 21 | 236 | 3.41e-31 | 117 |
MS.gene052743.t1 | MTR_1g115405 | 38.333 | 240 | 129 | 8 | 48 | 281 | 13 | 239 | 4.69e-31 | 116 |
MS.gene052743.t1 | MTR_2g101370 | 34.764 | 233 | 138 | 5 | 51 | 280 | 15 | 236 | 2.08e-29 | 112 |
MS.gene052743.t1 | MTR_4g063090 | 35.294 | 221 | 129 | 5 | 61 | 278 | 26 | 235 | 9.35e-29 | 110 |
MS.gene052743.t1 | MTR_1g006490 | 35.526 | 228 | 125 | 7 | 56 | 278 | 19 | 229 | 4.55e-28 | 108 |
MS.gene052743.t1 | MTR_8g013680 | 35.897 | 234 | 130 | 7 | 51 | 277 | 12 | 232 | 8.09e-28 | 108 |
MS.gene052743.t1 | MTR_1g006590 | 36.522 | 230 | 120 | 9 | 56 | 278 | 19 | 229 | 4.20e-27 | 106 |
MS.gene052743.t1 | MTR_5g012810 | 36.000 | 225 | 129 | 5 | 56 | 277 | 19 | 231 | 6.71e-27 | 105 |
MS.gene052743.t1 | MTR_7g023350 | 36.207 | 232 | 129 | 7 | 56 | 281 | 21 | 239 | 2.39e-26 | 104 |
MS.gene052743.t1 | MTR_2g060360 | 32.231 | 242 | 123 | 8 | 56 | 281 | 19 | 235 | 1.55e-21 | 91.7 |
MS.gene052743.t1 | MTR_5g063930 | 27.200 | 250 | 166 | 5 | 29 | 277 | 10 | 244 | 7.12e-20 | 87.0 |
MS.gene052743.t1 | MTR_8g087710 | 30.213 | 235 | 147 | 7 | 47 | 280 | 30 | 248 | 1.13e-19 | 86.7 |
MS.gene052743.t1 | MTR_7g010650 | 30.085 | 236 | 144 | 9 | 54 | 287 | 35 | 251 | 1.25e-18 | 84.0 |
MS.gene052743.t1 | MTR_4g075570 | 30.811 | 185 | 108 | 7 | 103 | 272 | 95 | 274 | 6.35e-18 | 82.8 |
MS.gene052743.t1 | MTR_2g017660 | 28.270 | 237 | 155 | 6 | 34 | 270 | 17 | 238 | 6.42e-18 | 82.0 |
MS.gene052743.t1 | MTR_2g017590 | 32.075 | 212 | 129 | 6 | 59 | 270 | 39 | 235 | 1.57e-17 | 80.9 |
MS.gene052743.t1 | MTR_4g075590 | 27.126 | 247 | 160 | 8 | 48 | 282 | 29 | 267 | 1.79e-17 | 81.3 |
MS.gene052743.t1 | MTR_2g017620 | 31.797 | 217 | 133 | 6 | 54 | 270 | 36 | 237 | 2.65e-17 | 80.1 |
MS.gene052743.t1 | MTR_2g017620 | 31.797 | 217 | 133 | 6 | 54 | 270 | 22 | 223 | 2.72e-17 | 79.7 |
MS.gene052743.t1 | MTR_8g087720 | 27.632 | 228 | 150 | 6 | 53 | 280 | 35 | 247 | 3.86e-17 | 79.7 |
MS.gene052743.t1 | MTR_4g084880 | 27.027 | 222 | 149 | 5 | 59 | 280 | 38 | 246 | 1.15e-16 | 78.6 |
MS.gene052743.t1 | MTR_4g006730 | 28.302 | 212 | 134 | 6 | 60 | 270 | 79 | 273 | 3.73e-16 | 77.4 |
MS.gene052743.t1 | MTR_5g079570 | 27.586 | 232 | 153 | 6 | 59 | 289 | 39 | 256 | 7.07e-16 | 76.3 |
MS.gene052743.t1 | MTR_2g104940 | 30.516 | 213 | 128 | 8 | 60 | 270 | 84 | 278 | 1.64e-15 | 75.9 |
MS.gene052743.t1 | MTR_2g017610 | 29.717 | 212 | 134 | 5 | 59 | 270 | 41 | 237 | 3.81e-15 | 74.3 |
MS.gene052743.t1 | MTR_3g008920 | 28.251 | 223 | 136 | 7 | 60 | 278 | 30 | 232 | 5.52e-15 | 73.6 |
MS.gene052743.t1 | MTR_2g017570 | 29.245 | 212 | 135 | 5 | 59 | 270 | 41 | 237 | 1.04e-14 | 72.8 |
MS.gene052743.t1 | MTR_1g097840 | 28.889 | 225 | 141 | 8 | 60 | 282 | 78 | 285 | 1.88e-13 | 69.7 |
MS.gene052743.t1 | MTR_4g006730 | 29.609 | 179 | 111 | 5 | 93 | 270 | 22 | 186 | 3.84e-13 | 67.8 |
MS.gene052743.t1 | MTR_4g006630 | 29.609 | 179 | 111 | 5 | 93 | 270 | 22 | 186 | 4.20e-13 | 67.4 |
MS.gene052743.t1 | MTR_2g017620 | 32.530 | 166 | 100 | 4 | 105 | 270 | 3 | 156 | 7.92e-13 | 66.2 |
MS.gene052743.t1 | MTR_1g070385 | 26.609 | 233 | 135 | 7 | 53 | 275 | 59 | 265 | 3.00e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052743.t1 | AT4G00430 | 85.121 | 289 | 40 | 1 | 1 | 289 | 1 | 286 | 0.0 | 510 |
MS.gene052743.t1 | AT2G45960 | 83.737 | 289 | 43 | 1 | 1 | 289 | 1 | 285 | 0.0 | 504 |
MS.gene052743.t1 | AT3G61430 | 83.737 | 289 | 43 | 1 | 1 | 289 | 1 | 285 | 9.59e-177 | 489 |
MS.gene052743.t1 | AT3G61430 | 83.737 | 289 | 43 | 1 | 1 | 289 | 1 | 285 | 9.59e-177 | 489 |
MS.gene052743.t1 | AT1G01620 | 83.737 | 289 | 43 | 1 | 1 | 289 | 1 | 285 | 4.86e-176 | 487 |
MS.gene052743.t1 | AT4G23400 | 83.737 | 289 | 44 | 1 | 1 | 289 | 1 | 286 | 1.03e-174 | 484 |
MS.gene052743.t1 | AT2G45960 | 83.398 | 259 | 39 | 1 | 1 | 259 | 1 | 255 | 5.92e-162 | 451 |
MS.gene052743.t1 | AT2G45960 | 83.398 | 259 | 39 | 1 | 1 | 259 | 1 | 255 | 1.45e-160 | 449 |
MS.gene052743.t1 | AT1G01620 | 86.385 | 213 | 29 | 0 | 77 | 289 | 1 | 213 | 2.46e-137 | 387 |
MS.gene052743.t1 | AT3G54820 | 70.611 | 262 | 71 | 1 | 33 | 288 | 15 | 276 | 6.06e-137 | 388 |
MS.gene052743.t1 | AT3G53420 | 72.901 | 262 | 65 | 1 | 33 | 288 | 16 | 277 | 8.71e-137 | 388 |
MS.gene052743.t1 | AT3G53420 | 72.901 | 262 | 65 | 1 | 33 | 288 | 16 | 277 | 8.71e-137 | 388 |
MS.gene052743.t1 | AT2G37170 | 71.374 | 262 | 69 | 1 | 33 | 288 | 57 | 318 | 1.73e-136 | 389 |
MS.gene052743.t1 | AT2G37170 | 71.374 | 262 | 69 | 1 | 33 | 288 | 14 | 275 | 4.06e-136 | 386 |
MS.gene052743.t1 | AT4G35100 | 70.342 | 263 | 78 | 0 | 26 | 288 | 8 | 270 | 7.01e-136 | 385 |
MS.gene052743.t1 | AT4G35100 | 70.342 | 263 | 78 | 0 | 26 | 288 | 8 | 270 | 7.01e-136 | 385 |
MS.gene052743.t1 | AT2G16850 | 71.484 | 256 | 73 | 0 | 33 | 288 | 13 | 268 | 2.08e-135 | 384 |
MS.gene052743.t1 | AT5G60660 | 69.466 | 262 | 74 | 1 | 33 | 288 | 16 | 277 | 4.47e-133 | 379 |
MS.gene052743.t1 | AT2G39010 | 67.286 | 269 | 82 | 1 | 26 | 288 | 8 | 276 | 1.15e-132 | 377 |
MS.gene052743.t1 | AT2G37180 | 69.847 | 262 | 73 | 1 | 33 | 288 | 14 | 275 | 1.25e-132 | 377 |
MS.gene052743.t1 | AT4G00430 | 81.106 | 217 | 38 | 1 | 1 | 217 | 1 | 214 | 1.75e-128 | 364 |
MS.gene052743.t1 | AT2G39010 | 63.918 | 194 | 64 | 1 | 26 | 213 | 8 | 201 | 6.58e-85 | 254 |
MS.gene052743.t1 | AT1G73190 | 36.842 | 247 | 120 | 10 | 56 | 285 | 24 | 251 | 1.83e-32 | 120 |
MS.gene052743.t1 | AT1G17810 | 35.714 | 238 | 126 | 6 | 56 | 281 | 24 | 246 | 1.32e-30 | 115 |
MS.gene052743.t1 | AT5G47450 | 37.815 | 238 | 126 | 7 | 47 | 277 | 10 | 232 | 6.15e-30 | 114 |
MS.gene052743.t1 | AT3G26520 | 35.193 | 233 | 127 | 7 | 56 | 280 | 22 | 238 | 2.41e-29 | 112 |
MS.gene052743.t1 | AT4G01470 | 34.177 | 237 | 142 | 5 | 47 | 280 | 12 | 237 | 1.80e-28 | 110 |
MS.gene052743.t1 | AT2G36830 | 34.498 | 229 | 132 | 6 | 56 | 279 | 21 | 236 | 2.21e-28 | 109 |
MS.gene052743.t1 | AT3G16240 | 36.123 | 227 | 127 | 6 | 56 | 277 | 19 | 232 | 2.75e-28 | 109 |
MS.gene052743.t1 | AT2G25810 | 34.286 | 245 | 145 | 7 | 43 | 285 | 6 | 236 | 2.96e-26 | 103 |
MS.gene052743.t1 | AT4G17340 | 35.470 | 234 | 137 | 5 | 47 | 277 | 10 | 232 | 7.08e-26 | 103 |
MS.gene052743.t1 | AT3G47440 | 33.607 | 244 | 117 | 8 | 56 | 281 | 23 | 239 | 3.71e-25 | 101 |
MS.gene052743.t1 | AT4G19030 | 29.329 | 283 | 170 | 9 | 4 | 280 | 13 | 271 | 1.08e-20 | 90.1 |
MS.gene052743.t1 | AT1G31885 | 29.811 | 265 | 157 | 9 | 17 | 270 | 3 | 249 | 3.47e-18 | 83.6 |
MS.gene052743.t1 | AT4G18910 | 27.451 | 255 | 175 | 5 | 28 | 280 | 22 | 268 | 5.25e-18 | 82.4 |
MS.gene052743.t1 | AT2G34390 | 27.500 | 280 | 180 | 8 | 6 | 280 | 2 | 263 | 1.63e-17 | 81.3 |
MS.gene052743.t1 | AT5G37820 | 27.778 | 216 | 131 | 6 | 59 | 269 | 46 | 241 | 6.95e-15 | 73.6 |
MS.gene052743.t1 | AT2G34390 | 29.333 | 225 | 144 | 6 | 59 | 280 | 9 | 221 | 7.83e-15 | 72.8 |
MS.gene052743.t1 | AT5G37820 | 27.778 | 216 | 131 | 6 | 59 | 269 | 82 | 277 | 8.06e-15 | 73.9 |
MS.gene052743.t1 | AT1G31885 | 30.500 | 200 | 116 | 6 | 79 | 270 | 11 | 195 | 3.71e-14 | 71.2 |
MS.gene052743.t1 | AT4G10380 | 27.854 | 219 | 140 | 7 | 53 | 270 | 75 | 276 | 1.37e-12 | 67.4 |
MS.gene052743.t1 | AT5G37810 | 26.126 | 222 | 149 | 5 | 59 | 280 | 46 | 252 | 2.53e-12 | 66.2 |
MS.gene052743.t1 | AT3G06100 | 29.289 | 239 | 140 | 9 | 56 | 289 | 46 | 260 | 3.05e-12 | 65.9 |
MS.gene052743.t1 | AT3G06100 | 29.237 | 236 | 138 | 9 | 59 | 289 | 1 | 212 | 1.93e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGGGATTGCTTGGGCTTT+TGG | 0.139339 | 4.4:+85344911 | MS.gene052743:CDS |
GGTGCTTCTTTATAGTCTTT+AGG | 0.277820 | 4.4:-85344731 | None:intergenic |
TTAATACCAGTCCCTGTAAT+TGG | 0.293171 | 4.4:-85346188 | None:intergenic |
TGTGGTGCTGCTGTTGTTAA+GGG | 0.295039 | 4.4:+85345503 | MS.gene052743:CDS |
TGTCATCATGGTCTTTCTAT+AGG | 0.314589 | 4.4:+85344783 | MS.gene052743:CDS |
TTGGCTACAATTCCAATTAC+AGG | 0.327149 | 4.4:+85346176 | MS.gene052743:CDS |
TTGTGGTGCTGCTGTTGTTA+AGG | 0.328028 | 4.4:+85345502 | MS.gene052743:CDS |
ATTAACCCAGCAGTGACATT+TGG | 0.351379 | 4.4:+85345407 | MS.gene052743:CDS |
TGCTCCTCAGTTGGTGTTCA+AGG | 0.355183 | 4.4:+85344893 | MS.gene052743:CDS |
CTACATAATTATGCAATGTT+TGG | 0.357596 | 4.4:+85345472 | MS.gene052743:CDS |
TACATAATTATGCAATGTTT+GGG | 0.360536 | 4.4:+85345473 | MS.gene052743:CDS |
GCTCTTGTTTATTGTACTGC+TGG | 0.363023 | 4.4:+85344947 | MS.gene052743:CDS |
AACTCTCCATGCTCAAATAA+AGG | 0.367666 | 4.4:-85344761 | None:intergenic |
AACTGAGGAGCATTTGTTAG+AGG | 0.373816 | 4.4:-85344882 | None:intergenic |
GTCATCATGGTCTTTCTATA+GGG | 0.378391 | 4.4:+85344784 | MS.gene052743:CDS |
TTGGTGTTCAAGGGATTGCT+TGG | 0.385841 | 4.4:+85344903 | MS.gene052743:CDS |
TATTGTACTGCTGGTATCTC+AGG | 0.389148 | 4.4:+85344956 | MS.gene052743:CDS |
TGAGTCTCTTGCATTTCGTT+TGG | 0.397032 | 4.4:-85345663 | None:intergenic |
GATTGAGCAGCAGTTCCTAT+TGG | 0.401413 | 4.4:-85344695 | None:intergenic |
TTAACCCAGCAGTGACATTT+GGG | 0.404206 | 4.4:+85345408 | MS.gene052743:CDS |
GGCAGGGATTGCTGAGTTTG+TGG | 0.419906 | 4.4:+85344805 | MS.gene052743:CDS |
GGTGCCAACACTCTCAATAA+AGG | 0.420596 | 4.4:+85345560 | MS.gene052743:CDS |
TTCTGGGTAGGGCCTTTCAC+TGG | 0.421787 | 4.4:+85346895 | MS.gene052743:CDS |
CAATGTTTGGGTGCTATTTG+TGG | 0.422792 | 4.4:+85345485 | MS.gene052743:CDS |
TATAGAGAAAACCAACCAAT+AGG | 0.431779 | 4.4:+85344680 | MS.gene052743:CDS |
TGGTGTTCAAGGGATTGCTT+GGG | 0.441333 | 4.4:+85344904 | MS.gene052743:CDS |
AAAAGCCCAAATGTCACTGC+TGG | 0.446487 | 4.4:-85345413 | None:intergenic |
TGCCTCACTTTGACTTGAAA+GGG | 0.453627 | 4.4:-85346963 | None:intergenic |
TTGCCTCACTTTGACTTGAA+AGG | 0.460204 | 4.4:-85346964 | None:intergenic |
TCATGGTCTTTCTATAGGGC+AGG | 0.465014 | 4.4:+85344788 | MS.gene052743:CDS |
AGCTCCAAGTCCATCACCTA+TGG | 0.471965 | 4.4:-85345588 | None:intergenic |
GAGCAGCAGTTCCTATTGGT+TGG | 0.490667 | 4.4:-85344691 | None:intergenic |
TATACAACAAGGACCAAGCT+TGG | 0.508349 | 4.4:+85346240 | MS.gene052743:CDS |
TACTCCATAGGTGATGGACT+TGG | 0.512860 | 4.4:+85345584 | MS.gene052743:CDS |
GCAGCACCTAGACTTCTAGC+TGG | 0.513663 | 4.4:-85346212 | None:intergenic |
GTCTCTCATATTGACGTGGT+TGG | 0.520234 | 4.4:-85345529 | None:intergenic |
GCAAGTGCTGCTCCAGTGAA+AGG | 0.524235 | 4.4:-85346907 | None:intergenic |
ACAATTCCAATTACAGGGAC+TGG | 0.531107 | 4.4:+85346182 | MS.gene052743:CDS |
TGGCTCTGATGACTATTTGA+TGG | 0.539363 | 4.4:-85346939 | None:intergenic |
AGAGATGAAGATGTAAGAGT+AGG | 0.539683 | 4.4:+85344647 | MS.gene052743:CDS |
ATTAACCCAGCTAGAAGTCT+AGG | 0.540082 | 4.4:+85346206 | MS.gene052743:CDS |
GGACTTGGAGCTGAGATTGT+TGG | 0.540230 | 4.4:+85345599 | MS.gene052743:CDS |
GCTCCTCAGTTGGTGTTCAA+GGG | 0.540750 | 4.4:+85344894 | MS.gene052743:CDS |
CACGCAAGCTATCTCTAACT+AGG | 0.540778 | 4.4:+85345441 | MS.gene052743:CDS |
GTAACCTTTATTGAGAGTGT+TGG | 0.540829 | 4.4:-85345564 | None:intergenic |
ATACAACAAGGACCAAGCTT+GGG | 0.545013 | 4.4:+85346241 | MS.gene052743:CDS |
TGGCTACAATTCCAATTACA+GGG | 0.551529 | 4.4:+85346177 | MS.gene052743:CDS |
TGCTCAAATAAAGGTGCTGA+AGG | 0.551644 | 4.4:-85344752 | None:intergenic |
AAAGGTTACTCCATAGGTGA+TGG | 0.553430 | 4.4:+85345578 | MS.gene052743:CDS |
CTCAATAAAGGTTACTCCAT+AGG | 0.557582 | 4.4:+85345572 | MS.gene052743:CDS |
TAACATGGTCATCCCAAGCT+TGG | 0.558282 | 4.4:-85346253 | None:intergenic |
AGCATGGAGAGTTGTCATCA+TGG | 0.558907 | 4.4:+85344771 | MS.gene052743:CDS |
TCACTTTGACTTGAAAGGGA+TGG | 0.562832 | 4.4:-85346959 | None:intergenic |
CATGGTCTTTCTATAGGGCA+GGG | 0.564902 | 4.4:+85344789 | MS.gene052743:CDS |
TCAGCACCTTTATTTGAGCA+TGG | 0.566089 | 4.4:+85344755 | MS.gene052743:CDS |
CCACGTCAATATGAGAGACT+TGG | 0.574053 | 4.4:+85345533 | MS.gene052743:CDS |
TCTAACAAATGCTCCTCAGT+TGG | 0.578434 | 4.4:+85344884 | MS.gene052743:CDS |
AAAGCCCAAATGTCACTGCT+GGG | 0.601769 | 4.4:-85345412 | None:intergenic |
CGTCAATATGAGAGACTTGG+TGG | 0.601958 | 4.4:+85345536 | MS.gene052743:CDS |
ACAGCAAATCCAATTGGCAG+TGG | 0.605076 | 4.4:-85346140 | None:intergenic |
CAGCACCTAGACTTCTAGCT+GGG | 0.629681 | 4.4:-85346211 | None:intergenic |
ATCCCTTTCAAGTCAAAGTG+AGG | 0.643751 | 4.4:+85346961 | MS.gene052743:CDS |
AATCCCTTGAACACCAACTG+AGG | 0.657135 | 4.4:-85344897 | None:intergenic |
CCAAGTCTCTCATATTGACG+TGG | 0.671854 | 4.4:-85345533 | None:intergenic |
TGCTGCTCTTGTATACAACA+AGG | 0.677621 | 4.4:+85346229 | MS.gene052743:CDS |
CAATATGAGAGACTTGGTGG+TGG | 0.725332 | 4.4:+85345539 | MS.gene052743:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATTTTTATATTTTTTA+AGG | - | chr4.4:85345078-85345097 | None:intergenic | 0.0% |
!!! | AATCAATGAAATTAAATTTT+TGG | - | chr4.4:85346420-85346439 | None:intergenic | 10.0% |
!!! | ACTTGATTAATTTTATTTTT+TGG | + | chr4.4:85346743-85346762 | MS.gene052743:intron | 10.0% |
!!! | ATTTTTGTTTCTTTATATAA+CGG | + | chr4.4:85344832-85344851 | MS.gene052743:CDS | 10.0% |
!!! | TAAAAAAATTGTTATGTTTT+AGG | - | chr4.4:85346390-85346409 | None:intergenic | 10.0% |
!! | ATTAATTAATCAAGTAGTAA+TGG | - | chr4.4:85346773-85346792 | None:intergenic | 15.0% |
!! | TATGATATATTAGTAAGATT+TGG | - | chr4.4:85346000-85346019 | None:intergenic | 15.0% |
!! | TTAAAATGATTTCTAACATT+AGG | - | chr4.4:85346512-85346531 | None:intergenic | 15.0% |
!!! | AGTGAATTAACATTTTTTTT+TGG | - | chr4.4:85345852-85345871 | None:intergenic | 15.0% |
!!! | ATGAATGAACATTTTTATTT+AGG | - | chr4.4:85345703-85345722 | None:intergenic | 15.0% |
!!! | GTGAATTAACATTTTTTTTT+GGG | - | chr4.4:85345851-85345870 | None:intergenic | 15.0% |
!! | AGAAAGATTTAATATACTGT+AGG | - | chr4.4:85345108-85345127 | None:intergenic | 20.0% |
!! | ATGATTCATAACTATTGAAA+TGG | + | chr4.4:85346051-85346070 | MS.gene052743:intron | 20.0% |
!! | GAAAGATTTAATATACTGTA+GGG | - | chr4.4:85345107-85345126 | None:intergenic | 20.0% |
!! | TACATAATTATGCAATGTTT+GGG | + | chr4.4:85345473-85345492 | MS.gene052743:CDS | 20.0% |
!!! | TAACTCACATTACATTATTT+TGG | + | chr4.4:85346861-85346880 | MS.gene052743:intron | 20.0% |
! | AAAGATGAAAAAGACTAACA+TGG | - | chr4.4:85346271-85346290 | None:intergenic | 25.0% |
! | ACAAGAGACACAATTATTAT+AGG | - | chr4.4:85346833-85346852 | None:intergenic | 25.0% |
! | CTACATAATTATGCAATGTT+TGG | + | chr4.4:85345472-85345491 | MS.gene052743:CDS | 25.0% |
! | GATATGTTAGCATAAATCTA+AGG | - | chr4.4:85345357-85345376 | None:intergenic | 25.0% |
! | TTACCAATTATCCTACTATA+CGG | + | chr4.4:85346545-85346564 | MS.gene052743:intron | 25.0% |
!! | AACTTTAGTTCATTTATCTC+CGG | - | chr4.4:85346647-85346666 | None:intergenic | 25.0% |
!! | AATATCTAAAACCGTATAGT+AGG | - | chr4.4:85346559-85346578 | None:intergenic | 25.0% |
!! | CATTTGAATTACTCAGATTT+TGG | + | chr4.4:85346115-85346134 | MS.gene052743:intron | 25.0% |
!! | GGCTAGAATTTTTCTTTTTA+AGG | - | chr4.4:85345814-85345833 | None:intergenic | 25.0% |
!!! | ACATTTTTATTTAGGCTTAC+AGG | - | chr4.4:85345695-85345714 | None:intergenic | 25.0% |
!!! | ATAACGGTTTTAACTGTTAT+GGG | + | chr4.4:85344848-85344867 | MS.gene052743:CDS | 25.0% |
!!! | TATAACGGTTTTAACTGTTA+TGG | + | chr4.4:85344847-85344866 | MS.gene052743:CDS | 25.0% |
!!! | TTTTAAGGACTAAATTGAAG+CGG | - | chr4.4:85345063-85345082 | None:intergenic | 25.0% |
AAAAAGACAGCAAATCCAAT+TGG | - | chr4.4:85346149-85346168 | None:intergenic | 30.0% | |
AAACCGTATAGTAGGATAAT+TGG | - | chr4.4:85346551-85346570 | None:intergenic | 30.0% | |
ACATCGCATAATATATGTAG+GGG | + | chr4.4:85345754-85345773 | MS.gene052743:intron | 30.0% | |
GACATCGCATAATATATGTA+GGG | + | chr4.4:85345753-85345772 | MS.gene052743:intron | 30.0% | |
TATAGAGAAAACCAACCAAT+AGG | + | chr4.4:85344680-85344699 | MS.gene052743:CDS | 30.0% | |
TTTAAGGACTAAATTGAAGC+GGG | - | chr4.4:85345062-85345081 | None:intergenic | 30.0% | |
! | ACGTGTCTTTTTACTAATGT+AGG | + | chr4.4:85345377-85345396 | MS.gene052743:intron | 30.0% |
! | GCACATATTGATTGAACAAT+TGG | - | chr4.4:85344995-85345014 | None:intergenic | 30.0% |
! | TAAGATTTGGACTTCTAGTT+TGG | - | chr4.4:85345987-85346006 | None:intergenic | 30.0% |
! | TAGAAGTCCAAACTTTTTGA+AGG | - | chr4.4:85345264-85345283 | None:intergenic | 30.0% |
! | TGAACACTTTGAAAAGTGAA+GGG | - | chr4.4:85345328-85345347 | None:intergenic | 30.0% |
! | TGTCTTTTTACTAATGTAGG+TGG | + | chr4.4:85345380-85345399 | MS.gene052743:intron | 30.0% |
! | TTGAACACTTTGAAAAGTGA+AGG | - | chr4.4:85345329-85345348 | None:intergenic | 30.0% |
! | TTGGTAAGTTGAGTTAAAGT+CGG | - | chr4.4:85345169-85345188 | None:intergenic | 30.0% |
! | TTTTGTGTAGTATCATTGCA+TGG | - | chr4.4:85345945-85345964 | None:intergenic | 30.0% |
!! | CTTTTTAAGGAGAATAAGCA+GGG | - | chr4.4:85345801-85345820 | None:intergenic | 30.0% |
!! | TCTTTTTAAGGAGAATAAGC+AGG | - | chr4.4:85345802-85345821 | None:intergenic | 30.0% |
!! | TTACGTTAGTCCTTTTGATT+CGG | + | chr4.4:85346438-85346457 | MS.gene052743:intron | 30.0% |
!!! | AATTGGATTTGCTGTCTTTT+TGG | + | chr4.4:85346148-85346167 | MS.gene052743:CDS | 30.0% |
!!! | ATTACATTATTTTGGTGCAG+TGG | + | chr4.4:85346869-85346888 | MS.gene052743:intron | 30.0% |
AACTCTCCATGCTCAAATAA+AGG | - | chr4.4:85344764-85344783 | None:intergenic | 35.0% | |
AACTTACCAATGTCAAGACT+CGG | + | chr4.4:85345179-85345198 | MS.gene052743:intron | 35.0% | |
ACCAAATTCACCGAATCAAA+AGG | - | chr4.4:85346451-85346470 | None:intergenic | 35.0% | |
AGAGATGAAGATGTAAGAGT+AGG | + | chr4.4:85344647-85344666 | MS.gene052743:CDS | 35.0% | |
ATTCTAGCCACTAAGCTATT+TGG | + | chr4.4:85345825-85345844 | MS.gene052743:intron | 35.0% | |
CTCAATAAAGGTTACTCCAT+AGG | + | chr4.4:85345572-85345591 | MS.gene052743:CDS | 35.0% | |
GGACATCGCATAATATATGT+AGG | + | chr4.4:85345752-85345771 | MS.gene052743:intron | 35.0% | |
GGACTTGTCAATCTTGATAA+CGG | + | chr4.4:85345200-85345219 | MS.gene052743:intron | 35.0% | |
GGTGCTTCTTTATAGTCTTT+AGG | - | chr4.4:85344734-85344753 | None:intergenic | 35.0% | |
GTCATCATGGTCTTTCTATA+GGG | + | chr4.4:85344784-85344803 | MS.gene052743:CDS | 35.0% | |
TGGCTACAATTCCAATTACA+GGG | + | chr4.4:85346177-85346196 | MS.gene052743:CDS | 35.0% | |
TGTCATCATGGTCTTTCTAT+AGG | + | chr4.4:85344783-85344802 | MS.gene052743:CDS | 35.0% | |
TTAATACCAGTCCCTGTAAT+TGG | - | chr4.4:85346191-85346210 | None:intergenic | 35.0% | |
TTCCATGCCTTCAAAAAGTT+TGG | + | chr4.4:85345254-85345273 | MS.gene052743:intron | 35.0% | |
TTGGCTACAATTCCAATTAC+AGG | + | chr4.4:85346176-85346195 | MS.gene052743:CDS | 35.0% | |
TTTGATACAGTCACCCAATT+TGG | - | chr4.4:85345227-85345246 | None:intergenic | 35.0% | |
! | GTAACCTTTATTGAGAGTGT+TGG | - | chr4.4:85345567-85345586 | None:intergenic | 35.0% |
!! | ATCTTGATAACGGTCCAAAT+TGG | + | chr4.4:85345210-85345229 | MS.gene052743:intron | 35.0% |
!! | TCTTGATAACGGTCCAAATT+GGG | + | chr4.4:85345211-85345230 | MS.gene052743:intron | 35.0% |
!!! | TCCTTTTGATTCGGTGAATT+TGG | + | chr4.4:85346447-85346466 | MS.gene052743:intron | 35.0% |
AAAGGTTACTCCATAGGTGA+TGG | + | chr4.4:85345578-85345597 | MS.gene052743:CDS | 40.0% | |
ACAATTCCAATTACAGGGAC+TGG | + | chr4.4:85346182-85346201 | MS.gene052743:CDS | 40.0% | |
ATACAACAAGGACCAAGCTT+GGG | + | chr4.4:85346241-85346260 | MS.gene052743:CDS | 40.0% | |
ATTAACCCAGCAGTGACATT+TGG | + | chr4.4:85345407-85345426 | MS.gene052743:CDS | 40.0% | |
ATTAACCCAGCTAGAAGTCT+AGG | + | chr4.4:85346206-85346225 | MS.gene052743:CDS | 40.0% | |
CATAATATATGTAGGGGTCG+GGG | + | chr4.4:85345760-85345779 | MS.gene052743:intron | 40.0% | |
CGCATAATATATGTAGGGGT+CGG | + | chr4.4:85345758-85345777 | MS.gene052743:intron | 40.0% | |
GCATAATATATGTAGGGGTC+GGG | + | chr4.4:85345759-85345778 | MS.gene052743:intron | 40.0% | |
GTTGAGTTAAAGTCGGACAT+TGG | - | chr4.4:85345162-85345181 | None:intergenic | 40.0% | |
TACCAACTGAGTTAAGCTCA+CGG | - | chr4.4:85345731-85345750 | None:intergenic | 40.0% | |
TATACAACAAGGACCAAGCT+TGG | + | chr4.4:85346240-85346259 | MS.gene052743:CDS | 40.0% | |
TATTGTACTGCTGGTATCTC+AGG | + | chr4.4:85344956-85344975 | MS.gene052743:CDS | 40.0% | |
TCTAACAAATGCTCCTCAGT+TGG | + | chr4.4:85344884-85344903 | MS.gene052743:CDS | 40.0% | |
TGAAGGGTGATTACTCTACT+CGG | - | chr4.4:85345312-85345331 | None:intergenic | 40.0% | |
TGAGTCTCTTGCATTTCGTT+TGG | - | chr4.4:85345666-85345685 | None:intergenic | 40.0% | |
TGCTGCTCTTGTATACAACA+AGG | + | chr4.4:85346229-85346248 | MS.gene052743:CDS | 40.0% | |
TTAACCCAGCAGTGACATTT+GGG | + | chr4.4:85345408-85345427 | MS.gene052743:CDS | 40.0% | |
! | AACCCTAGTACTTTGAGAAC+CGG | + | chr4.4:85346625-85346644 | MS.gene052743:intron | 40.0% |
! | AGTGACATTTGGGCTTTTCT+TGG | + | chr4.4:85345418-85345437 | MS.gene052743:CDS | 40.0% |
! | GCTCTTGTTTATTGTACTGC+TGG | + | chr4.4:85344947-85344966 | MS.gene052743:CDS | 40.0% |
! | TCAGCACCTTTATTTGAGCA+TGG | + | chr4.4:85344755-85344774 | MS.gene052743:CDS | 40.0% |
! | TGAGCTTAACTCAGTTGGTA+GGG | + | chr4.4:85345731-85345750 | MS.gene052743:intron | 40.0% |
! | TTTTGGGCCAAATAGCTTAG+TGG | - | chr4.4:85345835-85345854 | None:intergenic | 40.0% |
!! | AACTGAGGAGCATTTGTTAG+AGG | - | chr4.4:85344885-85344904 | None:intergenic | 40.0% |
!! | CAATGTTTGGGTGCTATTTG+TGG | + | chr4.4:85345485-85345504 | MS.gene052743:CDS | 40.0% |
!! | GTCCAAACTTTTTGAAGGCA+TGG | - | chr4.4:85345259-85345278 | None:intergenic | 40.0% |
!! | TCACTTTGACTTGAAAGGGA+TGG | - | chr4.4:85346962-85346981 | None:intergenic | 40.0% |
!! | TGCTCAAATAAAGGTGCTGA+AGG | - | chr4.4:85344755-85344774 | None:intergenic | 40.0% |
!! | TGCTGTCTTTTTGGTGCATT+TGG | + | chr4.4:85346157-85346176 | MS.gene052743:CDS | 40.0% |
!! | TGGCTCTGATGACTATTTGA+TGG | - | chr4.4:85346942-85346961 | None:intergenic | 40.0% |
!! | TTTGGTGCAGTGGATTTTCT+GGG | + | chr4.4:85346879-85346898 | MS.gene052743:intron | 40.0% |
!! | TTTTGGTGCAGTGGATTTTC+TGG | + | chr4.4:85346878-85346897 | MS.gene052743:intron | 40.0% |
AAAAGCCCAAATGTCACTGC+TGG | - | chr4.4:85345416-85345435 | None:intergenic | 45.0% | |
AAAGCCCAAATGTCACTGCT+GGG | - | chr4.4:85345415-85345434 | None:intergenic | 45.0% | |
AATCCCTTGAACACCAACTG+AGG | - | chr4.4:85344900-85344919 | None:intergenic | 45.0% | |
ACAAGTCCGAGTCTTGACAT+TGG | - | chr4.4:85345188-85345207 | None:intergenic | 45.0% | |
ACAGCAAATCCAATTGGCAG+TGG | - | chr4.4:85346143-85346162 | None:intergenic | 45.0% | |
AGCATGGAGAGTTGTCATCA+TGG | + | chr4.4:85344771-85344790 | MS.gene052743:CDS | 45.0% | |
CACGCAAGCTATCTCTAACT+AGG | + | chr4.4:85345441-85345460 | MS.gene052743:CDS | 45.0% | |
CATGGTCTTTCTATAGGGCA+GGG | + | chr4.4:85344789-85344808 | MS.gene052743:CDS | 45.0% | |
CCAAGTCTCTCATATTGACG+TGG | - | chr4.4:85345536-85345555 | None:intergenic | 45.0% | |
CCACGTCAATATGAGAGACT+TGG | + | chr4.4:85345533-85345552 | MS.gene052743:CDS | 45.0% | |
CGTCAATATGAGAGACTTGG+TGG | + | chr4.4:85345536-85345555 | MS.gene052743:CDS | 45.0% | |
GAGTTAAAGTCGGACATTGG+TGG | - | chr4.4:85345159-85345178 | None:intergenic | 45.0% | |
GATTGAGCAGCAGTTCCTAT+TGG | - | chr4.4:85344698-85344717 | None:intergenic | 45.0% | |
GGTGCCAACACTCTCAATAA+AGG | + | chr4.4:85345560-85345579 | MS.gene052743:CDS | 45.0% | |
GTCTCTCATATTGACGTGGT+TGG | - | chr4.4:85345532-85345551 | None:intergenic | 45.0% | |
GTGAGCTTAACTCAGTTGGT+AGG | + | chr4.4:85345730-85345749 | MS.gene052743:intron | 45.0% | |
TAACATGGTCATCCCAAGCT+TGG | - | chr4.4:85346256-85346275 | None:intergenic | 45.0% | |
TCATGGTCTTTCTATAGGGC+AGG | + | chr4.4:85344788-85344807 | MS.gene052743:CDS | 45.0% | |
TGGTGTTCAAGGGATTGCTT+GGG | + | chr4.4:85344904-85344923 | MS.gene052743:CDS | 45.0% | |
! | CTCCGGTTCTCAAAGTACTA+GGG | - | chr4.4:85346630-85346649 | None:intergenic | 45.0% |
! | TCTCCGGTTCTCAAAGTACT+AGG | - | chr4.4:85346631-85346650 | None:intergenic | 45.0% |
! | TTGGTGTTCAAGGGATTGCT+TGG | + | chr4.4:85344903-85344922 | MS.gene052743:CDS | 45.0% |
!! | ATTTTGGCACCACTGCCAAT+TGG | + | chr4.4:85346131-85346150 | MS.gene052743:CDS | 45.0% |
!! | CAATATGAGAGACTTGGTGG+TGG | + | chr4.4:85345539-85345558 | MS.gene052743:CDS | 45.0% |
!! | TACTCCATAGGTGATGGACT+TGG | + | chr4.4:85345584-85345603 | MS.gene052743:CDS | 45.0% |
!! | TGCAGTGGATTTTCTGGGTA+GGG | + | chr4.4:85346884-85346903 | MS.gene052743:intron | 45.0% |
!! | TGTGGTGCTGCTGTTGTTAA+GGG | + | chr4.4:85345503-85345522 | MS.gene052743:CDS | 45.0% |
!! | TTGTGGTGCTGCTGTTGTTA+AGG | + | chr4.4:85345502-85345521 | MS.gene052743:CDS | 45.0% |
!! | ATTAATTAATTATTTAGTAT+AGG | + | chr4.4:85346783-85346802 | MS.gene052743:intron | 5.0% |
!! | TAATTATATATTTAACATAA+AGG | - | chr4.4:85345885-85345904 | None:intergenic | 5.0% |
!! | TTCTAAATAAAATTAAATTA+TGG | - | chr4.4:85346311-85346330 | None:intergenic | 5.0% |
AGCTCCAAGTCCATCACCTA+TGG | - | chr4.4:85345591-85345610 | None:intergenic | 50.0% | |
CACCGTGAGCTTAACTCAGT+TGG | + | chr4.4:85345726-85345745 | MS.gene052743:intron | 50.0% | |
GAGCAGCAGTTCCTATTGGT+TGG | - | chr4.4:85344694-85344713 | None:intergenic | 50.0% | |
GGACTTGGAGCTGAGATTGT+TGG | + | chr4.4:85345599-85345618 | MS.gene052743:CDS | 50.0% | |
! | CAAGGGATTGCTTGGGCTTT+TGG | + | chr4.4:85344911-85344930 | MS.gene052743:CDS | 50.0% |
! | CAGCACCTAGACTTCTAGCT+GGG | - | chr4.4:85346214-85346233 | None:intergenic | 50.0% |
! | GAGAATAAGCAGGGTGTTCG+AGG | - | chr4.4:85345792-85345811 | None:intergenic | 50.0% |
! | GCTCCTCAGTTGGTGTTCAA+GGG | + | chr4.4:85344894-85344913 | MS.gene052743:CDS | 50.0% |
! | TGCTCCTCAGTTGGTGTTCA+AGG | + | chr4.4:85344893-85344912 | MS.gene052743:CDS | 50.0% |
!! | GTGCAGTGGATTTTCTGGGT+AGG | + | chr4.4:85346883-85346902 | MS.gene052743:intron | 50.0% |
GCAGCACCTAGACTTCTAGC+TGG | - | chr4.4:85346215-85346234 | None:intergenic | 55.0% | |
GGCAGGGATTGCTGAGTTTG+TGG | + | chr4.4:85344805-85344824 | MS.gene052743:CDS | 55.0% | |
TTCTGGGTAGGGCCTTTCAC+TGG | + | chr4.4:85346895-85346914 | MS.gene052743:CDS | 55.0% | |
! | GCAAGTGCTGCTCCAGTGAA+AGG | - | chr4.4:85346910-85346929 | None:intergenic | 55.0% |
! | GGGATTGCTTGGGCTTTTGG+TGG | + | chr4.4:85344914-85344933 | MS.gene052743:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 85344638 | 85346981 | 85344638 | ID=MS.gene052743 |
chr4.4 | mRNA | 85344638 | 85346981 | 85344638 | ID=MS.gene052743.t1;Parent=MS.gene052743 |
chr4.4 | exon | 85344638 | 85344977 | 85344638 | ID=MS.gene052743.t1.exon1;Parent=MS.gene052743.t1 |
chr4.4 | CDS | 85344638 | 85344977 | 85344638 | ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1 |
chr4.4 | exon | 85345399 | 85345694 | 85345399 | ID=MS.gene052743.t1.exon2;Parent=MS.gene052743.t1 |
chr4.4 | CDS | 85345399 | 85345694 | 85345399 | ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1 |
chr4.4 | exon | 85346131 | 85346271 | 85346131 | ID=MS.gene052743.t1.exon3;Parent=MS.gene052743.t1 |
chr4.4 | CDS | 85346131 | 85346271 | 85346131 | ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1 |
chr4.4 | exon | 85346889 | 85346981 | 85346889 | ID=MS.gene052743.t1.exon4;Parent=MS.gene052743.t1 |
chr4.4 | CDS | 85346889 | 85346981 | 85346889 | ID=cds.MS.gene052743.t1;Parent=MS.gene052743.t1 |
Gene Sequence |
Protein sequence |