AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83316

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83316.t1 MTR_6g069040 98.824 255 3 0 1 255 1 255 0.0 500
MS.gene83316.t1 MTR_1g077540 79.845 258 49 1 1 255 1 258 2.39e-152 425
MS.gene83316.t1 MTR_1g115405 57.255 255 106 1 1 255 1 252 4.99e-100 292
MS.gene83316.t1 MTR_7g023350 56.863 255 107 1 1 255 1 252 6.17e-94 276
MS.gene83316.t1 MTR_4g063090 54.902 255 112 1 1 255 1 252 3.91e-93 275
MS.gene83316.t1 MTR_7g103030 58.039 255 102 2 1 255 1 250 9.45e-93 273
MS.gene83316.t1 MTR_2g101370 54.800 250 109 1 4 253 3 248 1.10e-91 271
MS.gene83316.t1 MTR_8g013680 53.846 247 110 1 7 253 5 247 1.23e-85 255
MS.gene83316.t1 MTR_5g012810 53.333 240 111 1 5 244 3 241 2.90e-73 224
MS.gene83316.t1 MTR_1g006490 44.800 250 130 3 5 254 3 244 7.07e-71 218
MS.gene83316.t1 MTR_1g006590 45.600 250 128 3 5 254 3 244 1.45e-67 209
MS.gene83316.t1 MTR_2g060360 40.343 233 138 1 10 242 8 239 1.68e-54 176
MS.gene83316.t1 MTR_5g010150 39.419 241 128 8 21 248 52 287 4.64e-35 127
MS.gene83316.t1 MTR_5g082070 38.723 235 128 6 21 243 55 285 5.75e-35 127
MS.gene83316.t1 MTR_2g094270 37.037 243 136 6 12 238 31 272 1.31e-34 125
MS.gene83316.t1 MTR_7g101190 36.910 233 131 5 21 238 39 270 1.39e-34 125
MS.gene83316.t1 MTR_4g415300 38.034 234 130 6 21 243 56 285 3.40e-34 125
MS.gene83316.t1 MTR_3g118010 37.118 229 130 5 21 238 37 262 3.77e-34 124
MS.gene83316.t1 MTR_8g098375 38.298 235 129 7 21 243 52 282 5.28e-34 124
MS.gene83316.t1 MTR_3g070210 37.872 235 130 6 21 243 55 285 1.94e-33 123
MS.gene83316.t1 MTR_5g063930 34.413 247 145 7 12 255 28 260 2.12e-33 122
MS.gene83316.t1 MTR_4g059390 37.712 236 125 7 21 238 39 270 5.98e-33 121
MS.gene83316.t1 MTR_1g095070 39.779 181 97 4 69 238 25 204 1.49e-30 113
MS.gene83316.t1 MTR_5g079570 33.051 236 146 4 20 255 39 262 2.50e-28 108
MS.gene83316.t1 MTR_2g017620 32.895 228 144 5 16 242 19 238 1.56e-27 106
MS.gene83316.t1 MTR_3g008920 33.475 236 144 6 20 251 25 251 1.91e-27 106
MS.gene83316.t1 MTR_2g017620 32.895 228 144 5 16 242 33 252 1.94e-27 106
MS.gene83316.t1 MTR_2g017590 30.435 253 152 6 1 243 13 251 3.31e-27 106
MS.gene83316.t1 MTR_2g104940 32.735 223 142 3 25 247 84 298 2.02e-26 104
MS.gene83316.t1 MTR_2g017660 30.116 259 159 7 1 253 16 258 3.92e-26 103
MS.gene83316.t1 MTR_4g006730 32.110 218 140 3 25 242 79 288 6.47e-25 100
MS.gene83316.t1 MTR_8g087710 31.718 227 142 5 20 243 38 254 1.65e-24 99.0
MS.gene83316.t1 MTR_2g017620 35.542 166 103 3 78 242 9 171 7.21e-24 95.1
MS.gene83316.t1 MTR_2g017610 29.583 240 153 6 10 243 24 253 1.21e-23 96.7
MS.gene83316.t1 MTR_4g084880 29.204 226 151 3 20 243 34 252 1.92e-23 96.3
MS.gene83316.t1 MTR_2g094270 35.545 211 122 5 12 209 31 240 2.21e-23 95.9
MS.gene83316.t1 MTR_2g017570 29.167 240 154 6 10 243 24 253 8.76e-23 94.4
MS.gene83316.t1 MTR_7g010650 32.051 234 147 7 21 254 37 258 1.29e-22 94.0
MS.gene83316.t1 MTR_8g087720 29.461 241 147 6 12 243 27 253 6.08e-22 92.0
MS.gene83316.t1 MTR_4g006630 31.100 209 136 3 34 242 1 201 7.91e-22 90.5
MS.gene83316.t1 MTR_3g070210 33.654 208 121 5 21 214 55 259 9.88e-22 91.7
MS.gene83316.t1 MTR_4g006730 31.100 209 136 3 34 242 1 201 1.07e-21 90.1
MS.gene83316.t1 MTR_1g070385 27.897 233 158 5 21 253 62 284 1.45e-21 94.0
MS.gene83316.t1 MTR_4g415300 33.898 177 108 4 21 193 56 227 2.15e-19 84.3
MS.gene83316.t1 MTR_5g010150 36.364 165 95 5 21 179 52 212 2.89e-19 84.0
MS.gene83316.t1 MTR_1g095070 35.542 166 93 4 69 221 25 189 1.48e-18 81.3
MS.gene83316.t1 MTR_1g097840 28.571 224 149 4 25 245 78 293 2.17e-18 82.8
MS.gene83316.t1 MTR_8g098375 34.545 165 98 5 21 179 52 212 3.53e-18 81.3
MS.gene83316.t1 MTR_3g070210 33.742 163 100 3 21 178 55 214 6.72e-18 80.1
MS.gene83316.t1 MTR_4g059390 35.294 170 95 5 21 179 39 204 2.87e-17 78.2
MS.gene83316.t1 MTR_4g075590 26.772 254 155 7 11 242 27 271 2.19e-14 72.0
MS.gene83316.t1 MTR_4g075570 28.512 242 144 8 13 234 43 275 3.82e-14 71.2
MS.gene83316.t1 MTR_4g006730 32.335 167 105 3 25 191 79 237 3.92e-14 70.5
MS.gene83316.t1 MTR_8g468730 38.144 97 41 3 146 242 8 85 8.13e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83316.t1 AT1G73190 74.621 264 57 3 2 255 5 268 2.55e-126 359
MS.gene83316.t1 AT1G17810 74.144 263 59 3 2 255 5 267 3.35e-124 354
MS.gene83316.t1 AT4G01470 58.824 255 102 1 1 255 1 252 7.05e-102 297
MS.gene83316.t1 AT2G36830 56.078 255 108 1 1 255 1 251 1.53e-98 288
MS.gene83316.t1 AT3G26520 55.859 256 109 2 1 255 1 253 3.61e-96 282
MS.gene83316.t1 AT3G16240 52.209 249 116 1 7 255 5 250 3.55e-84 252
MS.gene83316.t1 AT5G47450 51.304 230 112 0 5 234 3 232 9.86e-78 235
MS.gene83316.t1 AT4G17340 51.250 240 117 0 5 244 3 242 7.93e-72 220
MS.gene83316.t1 AT2G25810 45.418 251 129 3 4 254 2 244 1.25e-67 209
MS.gene83316.t1 AT3G47440 41.593 226 129 3 18 242 20 243 3.20e-50 165
MS.gene83316.t1 AT2G37170 38.153 249 132 8 8 238 24 268 8.62e-37 131
MS.gene83316.t1 AT2G37170 38.153 249 132 8 8 238 67 311 1.04e-36 132
MS.gene83316.t1 AT2G37180 36.538 260 137 8 3 238 13 268 4.06e-36 130
MS.gene83316.t1 AT2G39010 36.864 236 127 6 21 238 38 269 9.00e-35 126
MS.gene83316.t1 AT3G53420 38.559 236 123 7 21 238 39 270 1.40e-34 125
MS.gene83316.t1 AT3G53420 38.559 236 123 7 21 238 39 270 1.40e-34 125
MS.gene83316.t1 AT3G54820 37.179 234 129 7 21 238 38 269 1.80e-34 125
MS.gene83316.t1 AT1G01620 40.598 234 124 7 21 243 52 281 9.57e-34 124
MS.gene83316.t1 AT2G16850 38.961 231 123 7 21 238 36 261 1.34e-33 123
MS.gene83316.t1 AT4G00430 39.301 229 125 6 21 238 53 278 1.84e-33 123
MS.gene83316.t1 AT2G45960 39.744 234 126 7 21 243 52 281 3.51e-33 122
MS.gene83316.t1 AT4G35100 37.555 229 129 5 21 238 38 263 1.29e-32 120
MS.gene83316.t1 AT4G35100 37.555 229 129 5 21 238 38 263 1.29e-32 120
MS.gene83316.t1 AT4G23400 38.655 238 123 8 21 243 53 282 1.52e-32 120
MS.gene83316.t1 AT3G61430 39.316 234 127 7 21 243 52 281 1.60e-32 120
MS.gene83316.t1 AT3G61430 39.316 234 127 7 21 243 52 281 1.60e-32 120
MS.gene83316.t1 AT5G60660 36.864 236 127 7 21 238 39 270 1.15e-31 118
MS.gene83316.t1 AT1G01620 42.784 194 98 5 61 243 18 209 5.56e-31 114
MS.gene83316.t1 AT5G37820 29.596 223 150 3 21 243 43 258 7.29e-27 105
MS.gene83316.t1 AT5G37820 29.596 223 150 3 21 243 79 294 1.47e-26 105
MS.gene83316.t1 AT1G80760 31.651 218 141 4 25 242 84 293 3.00e-25 101
MS.gene83316.t1 AT4G19030 32.035 231 143 6 20 243 54 277 1.01e-23 97.4
MS.gene83316.t1 AT4G18910 31.034 232 144 6 20 243 51 274 2.49e-23 96.3
MS.gene83316.t1 AT5G37810 28.700 223 152 3 21 243 43 258 3.47e-23 95.9
MS.gene83316.t1 AT1G31885 33.043 230 124 6 20 234 42 256 1.42e-22 94.7
MS.gene83316.t1 AT1G52180 62.857 70 26 0 139 208 47 116 4.95e-22 88.6
MS.gene83316.t1 AT2G45960 36.548 197 114 5 21 209 52 245 3.69e-21 90.5
MS.gene83316.t1 AT2G45960 36.548 197 114 5 21 209 52 245 5.01e-21 89.7
MS.gene83316.t1 AT4G10380 29.911 224 146 4 25 245 82 297 1.19e-20 89.4
MS.gene83316.t1 AT3G06100 26.749 243 167 4 3 243 28 261 2.43e-20 87.8
MS.gene83316.t1 AT1G31885 36.571 175 86 4 78 237 41 205 4.28e-20 87.0
MS.gene83316.t1 AT2G39010 34.911 169 95 4 21 178 38 202 1.04e-19 85.1
MS.gene83316.t1 AT3G06100 27.477 222 150 4 24 243 1 213 2.76e-18 81.3
MS.gene83316.t1 AT4G00430 37.126 167 98 4 21 183 53 216 5.64e-18 80.5
MS.gene83316.t1 AT2G34390 27.556 225 148 6 20 237 47 263 1.35e-12 66.6
MS.gene83316.t1 AT4G19030 31.638 177 107 6 20 189 54 223 1.83e-12 65.5
MS.gene83316.t1 AT2G34390 28.054 221 144 6 24 237 9 221 1.93e-12 65.5
MS.gene83316.t1 AT3G06100 28.261 138 97 2 106 243 45 180 6.17e-11 60.5

Find 77 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTACCACTGGATCTTC+TGG 0.218111 6.1:+63119280 MS.gene83316:CDS
ACTTTCATCTTTGTCTTTGC+TGG 0.227521 6.1:+63117987 MS.gene83316:CDS
TCCTTCGTGCTGTCTACTAT+TGG 0.263158 6.1:+63118531 MS.gene83316:CDS
ATGAACCCTGCACTTGCTTT+TGG 0.268743 6.1:+63119234 MS.gene83316:CDS
GAAGGCTCTGGCCTTGCTTT+GGG 0.287910 6.1:+63118011 MS.gene83316:CDS
TTCTGGGTTGGTCCATTCAT+TGG 0.295241 6.1:+63119297 MS.gene83316:CDS
CTTGTTGGTGGTCCATTTGA+TGG 0.299715 6.1:+63119204 MS.gene83316:CDS
GGCTCCAATAGTGCCCCTTT+TGG 0.299772 6.1:-63119139 None:intergenic
AGAAGGCTCTGGCCTTGCTT+TGG 0.312813 6.1:+63118010 MS.gene83316:CDS
CTTGAGATTATCATGACATT+TGG 0.328426 6.1:+63119081 MS.gene83316:CDS
GCAACTCGTAGGTATGCTTT+TGG 0.330854 6.1:+63117903 MS.gene83316:CDS
GTAGGTAACTAGTAATCTTC+AGG 0.345529 6.1:-63119396 None:intergenic
TTTCATCTGGCAAGGGGAAT+TGG 0.349294 6.1:+63119039 MS.gene83316:CDS
GTCTTTGCTGGAGAAGGCTC+TGG 0.351672 6.1:+63117999 MS.gene83316:CDS
ATCTTTGTCTTTGCTGGAGA+AGG 0.361094 6.1:+63117993 MS.gene83316:CDS
TCTTCTAGCATGCATGTATC+TGG 0.361197 6.1:+63118452 MS.gene83316:CDS
GATCCCAAAAGGGGCACTAT+TGG 0.365740 6.1:+63119135 MS.gene83316:CDS
GCCATTGCACCTTTAGCAAT+TGG 0.368504 6.1:+63119159 MS.gene83316:CDS
CAAGATTCTGCTTTCTCAGC+TGG 0.381161 6.1:+63118377 MS.gene83316:CDS
TTGGCCCTTCTTTGGTGGGA+TGG 0.410290 6.1:+63119253 MS.gene83316:CDS
GCATTACCACTGGATCTTCT+GGG 0.411559 6.1:+63119281 MS.gene83316:CDS
TTTCTCAGCTGGTGAATTGT+TGG 0.417310 6.1:+63118388 MS.gene83316:CDS
TAGTAACAAGCCTAAGCAAA+AGG 0.420993 6.1:-63118586 None:intergenic
AAGGTAGCTCTAATAGAATC+TGG 0.430438 6.1:-63117948 None:intergenic
CAACTGCAATTGATCCCAAA+AGG 0.437356 6.1:+63119124 MS.gene83316:CDS
GTGACATTTGGTGCTCTCAT+AGG 0.439857 6.1:+63118494 MS.gene83316:CDS
GTCAACCCAGCAGTGACATT+TGG 0.440018 6.1:+63118482 MS.gene83316:CDS
CTTCTTTGGTGGGATGGAGA+TGG 0.443845 6.1:+63119259 MS.gene83316:CDS
TTCATGCATGCTCCATCAAA+TGG 0.445092 6.1:-63119216 None:intergenic
TCCATTCATTGGTGCAGCAT+TGG 0.446273 6.1:+63119308 MS.gene83316:CDS
TTAGCAATTGGACTCATTGT+TGG 0.449771 6.1:+63119171 MS.gene83316:CDS
CATCTCCATCCCACCAAAGA+AGG 0.454047 6.1:-63119258 None:intergenic
GTTGGTGCAAATATCCTTGT+TGG 0.459750 6.1:+63119189 MS.gene83316:CDS
AGAGCACCAAATGTCACTGC+TGG 0.484887 6.1:-63118488 None:intergenic
CAGCTGAGAAAGCAGAATCT+TGG 0.495799 6.1:-63118376 None:intergenic
TGTGCATGAGGTGGCTCAGT+TGG 0.498129 6.1:-63119360 None:intergenic
AACTGCAATTGATCCCAAAA+GGG 0.498988 6.1:+63119125 MS.gene83316:CDS
GCCAATGCTGCACCAATGAA+TGG 0.500062 6.1:-63119309 None:intergenic
GAAGGGCCAAAAGCAAGTGC+AGG 0.506585 6.1:-63119240 None:intergenic
TACCACTGGATCTTCTGGGT+TGG 0.508336 6.1:+63119285 MS.gene83316:CDS
GTGCATGAGGTGGCTCAGTT+GGG 0.508449 6.1:-63119359 None:intergenic
AGCAAAGACAAAGATGAAAG+TGG 0.508555 6.1:-63117985 None:intergenic
AGTAACAAGCCTAAGCAAAA+GGG 0.520423 6.1:-63118585 None:intergenic
CTTGCCAGATGAAACCCTCC+TGG 0.524847 6.1:-63119030 None:intergenic
AATCTTCAGGAGCAAGAGGC+TGG 0.526932 6.1:-63119383 None:intergenic
GAGACCAGGAGGGTTTCATC+TGG 0.538168 6.1:+63119026 MS.gene83316:intron
AGGGGAATTGGTGTAGGACA+TGG 0.549780 6.1:+63119051 MS.gene83316:CDS
TTGGTGCTCTCATAGGTGGC+AGG 0.554676 6.1:+63118501 MS.gene83316:CDS
GATGGAGATGGCATTACCAC+TGG 0.559557 6.1:+63119271 MS.gene83316:CDS
CAGGAGGGTTTCATCTGGCA+AGG 0.560195 6.1:+63119031 MS.gene83316:CDS
TTCTGTTTATTATAGAGACC+AGG 0.564245 6.1:+63119012 MS.gene83316:intron
TCCAATTGCTAAAGGTGCAA+TGG 0.570541 6.1:-63119160 None:intergenic
GGTGCAAATATCCTTGTTGG+TGG 0.574728 6.1:+63119192 MS.gene83316:CDS
TAGTAATCTTCAGGAGCAAG+AGG 0.578113 6.1:-63119387 None:intergenic
AGTGGAAGCAAATTCAGCTA+AGG 0.584032 6.1:-63117967 None:intergenic
CTGGCAAGGGGAATTGGTGT+AGG 0.587924 6.1:+63119045 MS.gene83316:CDS
ACATTTGGTGCTCTCATAGG+TGG 0.602269 6.1:+63118497 MS.gene83316:CDS
ACAATGAGTCCAATTGCTAA+AGG 0.602275 6.1:-63119168 None:intergenic
ATGTCACTGCTGGGTTGACA+TGG 0.602359 6.1:-63118478 None:intergenic
AGGAGGGTTTCATCTGGCAA+GGG 0.609867 6.1:+63119032 MS.gene83316:CDS
TAGCTCTAATAGAATCTGGA+TGG 0.613359 6.1:-63117944 None:intergenic
TCTAGCATGCATGTATCTGG+TGG 0.614969 6.1:+63118455 MS.gene83316:CDS
GGAGGGTTTCATCTGGCAAG+GGG 0.615421 6.1:+63119033 MS.gene83316:CDS
AAACTTTGATGGCAACTCGT+AGG 0.617737 6.1:+63117892 None:intergenic
CATCAAATGGACCACCAACA+AGG 0.619845 6.1:-63119203 None:intergenic
ATCTCCATCCCACCAAAGAA+GGG 0.620130 6.1:-63119257 None:intergenic
AAGGGCCAAAAGCAAGTGCA+GGG 0.633175 6.1:-63119239 None:intergenic
AGAGGCTGGTGTGCATGAGG+TGG 0.640577 6.1:-63119369 None:intergenic
ACTGCAATTGATCCCAAAAG+GGG 0.644013 6.1:+63119126 MS.gene83316:CDS
ATGTATACAAACCCAAAGCA+AGG 0.648043 6.1:-63118022 None:intergenic
TGTTTATTATAGAGACCAGG+AGG 0.648170 6.1:+63119015 MS.gene83316:intron
TAGGCTTGTTACTAATAACA+TGG 0.650106 6.1:+63118595 MS.gene83316:CDS
GCAAGAGGCTGGTGTGCATG+AGG 0.666450 6.1:-63119372 None:intergenic
GTTTATTATAGAGACCAGGA+GGG 0.672843 6.1:+63119016 MS.gene83316:intron
GACCAACCCAGAAGATCCAG+TGG 0.676635 6.1:-63119287 None:intergenic
GAGCACCAAATGTCACTGCT+GGG 0.683403 6.1:-63118487 None:intergenic
TCCAATAGTAGACAGCACGA+AGG 0.754250 6.1:-63118532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTCTCAAATTATTAG+TGG - chr6.1:63118159-63118178 None:intergenic 15.0%
!! TTGAGAATAATTATATATGT+CGG + chr6.1:63118167-63118186 MS.gene83316:intron 15.0%
!! ATATTATTATGGTATGTTGA+TGG + chr6.1:63118311-63118330 MS.gene83316:intron 20.0%
!! TGCATGCATATATATTATTA+TGG + chr6.1:63118300-63118319 MS.gene83316:intron 20.0%
!!! TTAGCATTTGTGTTTATTTT+TGG + chr6.1:63118277-63118296 MS.gene83316:intron 20.0%
! AGTTAATTAGTTATGCAACA+AGG - chr6.1:63118063-63118082 None:intergenic 25.0%
! TCTCAAATTATTAGTGGTAT+CGG - chr6.1:63118153-63118172 None:intergenic 25.0%
!! ATTTTCAATAAGAACTCATG+TGG + chr6.1:63118980-63118999 MS.gene83316:intron 25.0%
!!! TTTTCTATGATGTATTGACA+TGG - chr6.1:63118882-63118901 None:intergenic 25.0%
AGGAGTCATCATAATTTACT+AGG + chr6.1:63118672-63118691 MS.gene83316:intron 30.0%
AGTCATCATAATTTACTAGG+AGG + chr6.1:63118675-63118694 MS.gene83316:intron 30.0%
CTTGAGATTATCATGACATT+TGG + chr6.1:63119081-63119100 MS.gene83316:CDS 30.0%
GTCATCATAATTTACTAGGA+GGG + chr6.1:63118676-63118695 MS.gene83316:intron 30.0%
TATATTAAAGACGTGTCATG+TGG + chr6.1:63118840-63118859 MS.gene83316:intron 30.0%
TCATCATAATTTACTAGGAG+GGG + chr6.1:63118677-63118696 MS.gene83316:intron 30.0%
TTCTGTTTATTATAGAGACC+AGG + chr6.1:63119012-63119031 MS.gene83316:intron 30.0%
! TATTGGATTGCTCAACTTTT+AGG + chr6.1:63118548-63118567 MS.gene83316:CDS 30.0%
!! TAGGCTTGTTACTAATAACA+TGG + chr6.1:63118595-63118614 MS.gene83316:CDS 30.0%
AACTGCAATTGATCCCAAAA+GGG + chr6.1:63119125-63119144 MS.gene83316:CDS 35.0%
ACAATGAGTCCAATTGCTAA+AGG - chr6.1:63119171-63119190 None:intergenic 35.0%
ACACCAACACTTCAGATTAA+AGG + chr6.1:63118778-63118797 MS.gene83316:intron 35.0%
ACTTTCATCTTTGTCTTTGC+TGG + chr6.1:63117987-63118006 MS.gene83316:CDS 35.0%
AGCAAAGACAAAGATGAAAG+TGG - chr6.1:63117988-63118007 None:intergenic 35.0%
AGTAACAAGCCTAAGCAAAA+GGG - chr6.1:63118588-63118607 None:intergenic 35.0%
ATGTATACAAACCCAAAGCA+AGG - chr6.1:63118025-63118044 None:intergenic 35.0%
CTGAATATGTTAGTCCAATG+TGG + chr6.1:63118727-63118746 MS.gene83316:intron 35.0%
GTTCATGTTTCATAGCTATG+TGG + chr6.1:63118251-63118270 MS.gene83316:intron 35.0%
GTTTATTATAGAGACCAGGA+GGG + chr6.1:63119016-63119035 MS.gene83316:intron 35.0%
TAGTAACAAGCCTAAGCAAA+AGG - chr6.1:63118589-63118608 None:intergenic 35.0%
TCTCATGTGTATTAGCTAGA+AGG + chr6.1:63118652-63118671 MS.gene83316:intron 35.0%
TGGACTAACATATTCAGAAG+AGG - chr6.1:63118724-63118743 None:intergenic 35.0%
TGTTTATTATAGAGACCAGG+AGG + chr6.1:63119015-63119034 MS.gene83316:intron 35.0%
TTAGCAATTGGACTCATTGT+TGG + chr6.1:63119171-63119190 MS.gene83316:CDS 35.0%
! AACATATTCAGAAGAGGCAT+TGG - chr6.1:63118718-63118737 None:intergenic 35.0%
! ACACCTTTAATCTGAAGTGT+TGG - chr6.1:63118784-63118803 None:intergenic 35.0%
! TAAGAACTCATGTGGTGTTA+TGG + chr6.1:63118988-63119007 MS.gene83316:intron 35.0%
!! AAGGTAGCTCTAATAGAATC+TGG - chr6.1:63117951-63117970 None:intergenic 35.0%
!! TAGCTCTAATAGAATCTGGA+TGG - chr6.1:63117947-63117966 None:intergenic 35.0%
!!! TCAACTTTTAGGTGCTATTG+TGG + chr6.1:63118559-63118578 MS.gene83316:CDS 35.0%
ACTGCAATTGATCCCAAAAG+GGG + chr6.1:63119126-63119145 MS.gene83316:CDS 40.0%
AGTGGAAGCAAATTCAGCTA+AGG - chr6.1:63117970-63117989 None:intergenic 40.0%
ATCTTTGTCTTTGCTGGAGA+AGG + chr6.1:63117993-63118012 MS.gene83316:CDS 40.0%
ATGAACACTCCTCAGATTAG+AGG - chr6.1:63118237-63118256 None:intergenic 40.0%
ATGGCCACATAGTCATAACA+TGG - chr6.1:63118092-63118111 None:intergenic 40.0%
CAACTGCAATTGATCCCAAA+AGG + chr6.1:63119124-63119143 MS.gene83316:CDS 40.0%
CATGCCATGTTATGACTATG+TGG + chr6.1:63118085-63118104 MS.gene83316:intron 40.0%
GTTGGTGCAAATATCCTTGT+TGG + chr6.1:63119189-63119208 MS.gene83316:CDS 40.0%
TAGTAATCTTCAGGAGCAAG+AGG - chr6.1:63119390-63119409 None:intergenic 40.0%
TCTTCTAGCATGCATGTATC+TGG + chr6.1:63118452-63118471 MS.gene83316:CDS 40.0%
TTCATGCATGCTCCATCAAA+TGG - chr6.1:63119219-63119238 None:intergenic 40.0%
TTTCTCAGCTGGTGAATTGT+TGG + chr6.1:63118388-63118407 MS.gene83316:CDS 40.0%
! TCCAATTGCTAAAGGTGCAA+TGG - chr6.1:63119163-63119182 None:intergenic 40.0%
!! TATATATGTCGGTGTCGTGT+CGG + chr6.1:63118178-63118197 MS.gene83316:intron 40.0%
!! TCGTAGGTATGCTTTTGGAA+GGG + chr6.1:63117908-63117927 MS.gene83316:CDS 40.0%
ACTAGGACACCTCTAATCTG+AGG + chr6.1:63118225-63118244 MS.gene83316:intron 45.0%
ATCTCCATCCCACCAAAGAA+GGG - chr6.1:63119260-63119279 None:intergenic 45.0%
ATGAAGCATGGATCTGGACA+CGG + chr6.1:63118110-63118129 MS.gene83316:intron 45.0%
CAAGATTCTGCTTTCTCAGC+TGG + chr6.1:63118377-63118396 MS.gene83316:CDS 45.0%
CAGCTGAGAAAGCAGAATCT+TGG - chr6.1:63118379-63118398 None:intergenic 45.0%
CATCAAATGGACCACCAACA+AGG - chr6.1:63119206-63119225 None:intergenic 45.0%
GCATTACCACTGGATCTTCT+GGG + chr6.1:63119281-63119300 MS.gene83316:CDS 45.0%
GCCATTGCACCTTTAGCAAT+TGG + chr6.1:63119159-63119178 MS.gene83316:CDS 45.0%
GGTGCAAATATCCTTGTTGG+TGG + chr6.1:63119192-63119211 MS.gene83316:CDS 45.0%
TCCAATAGTAGACAGCACGA+AGG - chr6.1:63118535-63118554 None:intergenic 45.0%
TCCATTCATTGGTGCAGCAT+TGG + chr6.1:63119308-63119327 MS.gene83316:CDS 45.0%
TCCTTCGTGCTGTCTACTAT+TGG + chr6.1:63118531-63118550 MS.gene83316:CDS 45.0%
TCTAGCATGCATGTATCTGG+TGG + chr6.1:63118455-63118474 MS.gene83316:CDS 45.0%
TTACTAGGAGGGGTGAGAAT+AGG + chr6.1:63118687-63118706 MS.gene83316:intron 45.0%
TTTCATCTGGCAAGGGGAAT+TGG + chr6.1:63119039-63119058 MS.gene83316:CDS 45.0%
! ATGAACCCTGCACTTGCTTT+TGG + chr6.1:63119234-63119253 MS.gene83316:CDS 45.0%
! CTCGTAGGTATGCTTTTGGA+AGG + chr6.1:63117907-63117926 MS.gene83316:CDS 45.0%
! GCAACTCGTAGGTATGCTTT+TGG + chr6.1:63117903-63117922 MS.gene83316:CDS 45.0%
!! ACATTTGGTGCTCTCATAGG+TGG + chr6.1:63118497-63118516 MS.gene83316:CDS 45.0%
!! ACTTGCTTTTGGCCCTTCTT+TGG + chr6.1:63119245-63119264 MS.gene83316:CDS 45.0%
!! CTTGTTGGTGGTCCATTTGA+TGG + chr6.1:63119204-63119223 MS.gene83316:CDS 45.0%
!! GATTAGAGGTGTCCTAGTGT+CGG - chr6.1:63118223-63118242 None:intergenic 45.0%
!! GTGACATTTGGTGCTCTCAT+AGG + chr6.1:63118494-63118513 MS.gene83316:CDS 45.0%
!! TTCTGGGTTGGTCCATTCAT+TGG + chr6.1:63119297-63119316 MS.gene83316:CDS 45.0%
!!! CGTGTCATGTGGCAGTTTTT+TGG + chr6.1:63118851-63118870 MS.gene83316:intron 45.0%
AAGGGCCAAAAGCAAGTGCA+GGG - chr6.1:63119242-63119261 None:intergenic 50.0%
AATCTTCAGGAGCAAGAGGC+TGG - chr6.1:63119386-63119405 None:intergenic 50.0%
AGGAGGGGTGAGAATAGGTT+AGG + chr6.1:63118692-63118711 MS.gene83316:intron 50.0%
AGGAGGGTTTCATCTGGCAA+GGG + chr6.1:63119032-63119051 MS.gene83316:CDS 50.0%
AGGGGAATTGGTGTAGGACA+TGG + chr6.1:63119051-63119070 MS.gene83316:CDS 50.0%
CATCTCCATCCCACCAAAGA+AGG - chr6.1:63119261-63119280 None:intergenic 50.0%
CTTCTTTGGTGGGATGGAGA+TGG + chr6.1:63119259-63119278 MS.gene83316:CDS 50.0%
GACTATGTGGCCATGAAGCA+TGG + chr6.1:63118098-63118117 MS.gene83316:intron 50.0%
GAGCACCAAATGTCACTGCT+GGG - chr6.1:63118490-63118509 None:intergenic 50.0%
GATGGAGATGGCATTACCAC+TGG + chr6.1:63119271-63119290 MS.gene83316:CDS 50.0%
GCCAATGCTGCACCAATGAA+TGG - chr6.1:63119312-63119331 None:intergenic 50.0%
GGCATTACCACTGGATCTTC+TGG + chr6.1:63119280-63119299 MS.gene83316:CDS 50.0%
GTCAACCCAGCAGTGACATT+TGG + chr6.1:63118482-63118501 MS.gene83316:CDS 50.0%
GTGTCCAGATCCATGCTTCA+TGG - chr6.1:63118111-63118130 None:intergenic 50.0%
TACCACTGGATCTTCTGGGT+TGG + chr6.1:63119285-63119304 MS.gene83316:CDS 50.0%
TCAGACACACGTGTCCACAT+TGG - chr6.1:63118744-63118763 None:intergenic 50.0%
! AGAGCACCAAATGTCACTGC+TGG - chr6.1:63118491-63118510 None:intergenic 50.0%
! ATGTCACTGCTGGGTTGACA+TGG - chr6.1:63118481-63118500 None:intergenic 50.0%
! GCTCCAATAGTGCCCCTTTT+GGG - chr6.1:63119141-63119160 None:intergenic 50.0%
! GCTTTTGGCCCTTCTTTGGT+GGG + chr6.1:63119249-63119268 MS.gene83316:CDS 50.0%
! TGCTTTTGGCCCTTCTTTGG+TGG + chr6.1:63119248-63119267 MS.gene83316:CDS 50.0%
! TTGTGGCTGCCCTTTTGCTT+AGG + chr6.1:63118576-63118595 MS.gene83316:CDS 50.0%
!! GATCCCAAAAGGGGCACTAT+TGG + chr6.1:63119135-63119154 MS.gene83316:CDS 50.0%
!! TGCTTTTGGAAGGGCTGATG+AGG + chr6.1:63117917-63117936 MS.gene83316:CDS 50.0%
CAGGAGGGTTTCATCTGGCA+AGG + chr6.1:63119031-63119050 MS.gene83316:CDS 55.0%
CATGGATCTGGACACGGACA+CGG + chr6.1:63118116-63118135 MS.gene83316:intron 55.0%
CTGGCAAGGGGAATTGGTGT+AGG + chr6.1:63119045-63119064 MS.gene83316:CDS 55.0%
CTTGCCAGATGAAACCCTCC+TGG - chr6.1:63119033-63119052 None:intergenic 55.0%
GAAGGGCCAAAAGCAAGTGC+AGG - chr6.1:63119243-63119262 None:intergenic 55.0%
GACCAACCCAGAAGATCCAG+TGG - chr6.1:63119290-63119309 None:intergenic 55.0%
GAGACCAGGAGGGTTTCATC+TGG + chr6.1:63119026-63119045 MS.gene83316:intron 55.0%
GGAGGGTTTCATCTGGCAAG+GGG + chr6.1:63119033-63119052 MS.gene83316:CDS 55.0%
GTCTTTGCTGGAGAAGGCTC+TGG + chr6.1:63117999-63118018 MS.gene83316:CDS 55.0%
GTGCATGAGGTGGCTCAGTT+GGG - chr6.1:63119362-63119381 None:intergenic 55.0%
GTGGCCATGAAGCATGGATC+TGG + chr6.1:63118104-63118123 MS.gene83316:intron 55.0%
TGTGCATGAGGTGGCTCAGT+TGG - chr6.1:63119363-63119382 None:intergenic 55.0%
TTGGCCCTTCTTTGGTGGGA+TGG + chr6.1:63119253-63119272 MS.gene83316:CDS 55.0%
! GGCTCCAATAGTGCCCCTTT+TGG - chr6.1:63119142-63119161 None:intergenic 55.0%
! TTGGTGCTCTCATAGGTGGC+AGG + chr6.1:63118501-63118520 MS.gene83316:CDS 55.0%
!! AGAAGGCTCTGGCCTTGCTT+TGG + chr6.1:63118010-63118029 MS.gene83316:CDS 55.0%
!! GAAGGCTCTGGCCTTGCTTT+GGG + chr6.1:63118011-63118030 MS.gene83316:CDS 55.0%
AGAGGCTGGTGTGCATGAGG+TGG - chr6.1:63119372-63119391 None:intergenic 60.0%
CACGACACGTGTCCGACACT+AGG + chr6.1:63118208-63118227 MS.gene83316:intron 60.0%
GCAAGAGGCTGGTGTGCATG+AGG - chr6.1:63119375-63119394 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 63117900 63119410 63117900 ID=MS.gene83316
chr6.1 mRNA 63117900 63119410 63117900 ID=MS.gene83316.t1;Parent=MS.gene83316
chr6.1 exon 63117900 63118032 63117900 ID=MS.gene83316.t1.exon1;Parent=MS.gene83316.t1
chr6.1 CDS 63117900 63118032 63117900 ID=cds.MS.gene83316.t1;Parent=MS.gene83316.t1
chr6.1 exon 63118366 63118616 63118366 ID=MS.gene83316.t1.exon2;Parent=MS.gene83316.t1
chr6.1 CDS 63118366 63118616 63118366 ID=cds.MS.gene83316.t1;Parent=MS.gene83316.t1
chr6.1 exon 63119027 63119410 63119027 ID=MS.gene83316.t1.exon3;Parent=MS.gene83316.t1
chr6.1 CDS 63119027 63119410 63119027 ID=cds.MS.gene83316.t1;Parent=MS.gene83316.t1
Gene Sequence

>MS.gene83316

ATGGCAACTCGTAGGTATGCTTTTGGAAGGGCTGATGAGGCTTACCATCCAGATTCTATTAGAGCTACCTTAGCTGAATTTGCTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGGTTTGTATACATTCAAAATTAACATATCCTTGTTGCATAACTAATTAACTAGCATGCCATGTTATGACTATGTGGCCATGAAGCATGGATCTGGACACGGACACGGACACGAACACACCGATACCACTAATAATTTGAGAATAATTATATATGTCGGTGTCGTGTCGGTGTCAGACACGACACGTGTCCGACACTAGGACACCTCTAATCTGAGGAGTGTTCATGTTTCATAGCTATGTGGTAGTTAGCATTTGTGTTTATTTTTGGTGCATGCATATATATTATTATGGTATGTTGATGGTGATTTTTTTGCATTGTTTCTCTTTGTTACAGTTAAGATTTACCAAGATTCTGCTTTCTCAGCTGGTGAATTGTTGGCAGTTGCACTAGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCTAGCATGCATGTATCTGGTGGCCATGTCAACCCAGCAGTGACATTTGGTGCTCTCATAGGTGGCAGGATCTCTGTCCTTCGTGCTGTCTACTATTGGATTGCTCAACTTTTAGGTGCTATTGTGGCTGCCCTTTTGCTTAGGCTTGTTACTAATAACATGGTAATCATTTTTTTTTATGAATGAGTCATAATTTTTCTCATGTGTATTAGCTAGAAGGAGTCATCATAATTTACTAGGAGGGGTGAGAATAGGTTAGGCCAATGCCTCTTCTGAATATGTTAGTCCAATGTGGACACGTGTGTCTGACACGTCATTGTTTGACACCAACACTTCAGATTAAAGGTGTCACATGAGTAAATGTACATACAAATATCTGACACTTTATATTAAAGACGTGTCATGTGGCAGTTTTTTGGCTTGTCCATGTCAATACATCATAGAAAATGTAAAAAAAGATTAGATAATATTTACATGATTGAAAACAATGAATTTTCTATAATATTTACATGATTGAAAAAATGAATTTTCAATAAGAACTCATGTGGTGTTATGGTTTCTGTTTATTATAGAGACCAGGAGGGTTTCATCTGGCAAGGGGAATTGGTGTAGGACATGGACTTATACTTGAGATTATCATGACATTTGGACTAATGTACACAGTATATGCAACTGCAATTGATCCCAAAAGGGGCACTATTGGAGCCATTGCACCTTTAGCAATTGGACTCATTGTTGGTGCAAATATCCTTGTTGGTGGTCCATTTGATGGAGCATGCATGAACCCTGCACTTGCTTTTGGCCCTTCTTTGGTGGGATGGAGATGGCATTACCACTGGATCTTCTGGGTTGGTCCATTCATTGGTGCAGCATTGGCAGCACTCATATATGAATATCTTGTGATCCCAACTGAGCCACCTCATGCACACCAGCCTCTTGCTCCTGAAGATTACTAG
Protein sequence

>MS.gene83316.t1

MATRRYAFGRADEAYHPDSIRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQLLGAIVAALLLRLVTNNMRPGGFHLARGIGVGHGLILEIIMTFGLMYTVYATAIDPKRGTIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIFWVGPFIGAALAALIYEYLVIPTEPPHAHQPLAPEDY