AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069812

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069812.t1 MTR_6g069040 98.431 255 4 0 1 255 1 255 0.0 498
MS.gene069812.t1 MTR_1g077540 79.457 258 50 1 1 255 1 258 1.84e-151 422
MS.gene069812.t1 MTR_1g115405 57.647 255 105 1 1 255 1 252 5.80e-101 294
MS.gene069812.t1 MTR_7g023350 57.255 255 106 1 1 255 1 252 9.33e-95 279
MS.gene069812.t1 MTR_4g063090 54.902 255 112 1 1 255 1 252 1.08e-93 276
MS.gene069812.t1 MTR_7g103030 58.039 255 102 2 1 255 1 250 3.24e-93 275
MS.gene069812.t1 MTR_2g101370 54.800 250 109 1 4 253 3 248 3.17e-92 272
MS.gene069812.t1 MTR_8g013680 53.846 247 110 1 7 253 5 247 4.77e-86 256
MS.gene069812.t1 MTR_5g012810 53.333 240 111 1 5 244 3 241 9.77e-74 225
MS.gene069812.t1 MTR_1g006490 44.800 250 130 3 5 254 3 244 4.78e-71 218
MS.gene069812.t1 MTR_1g006590 45.600 250 128 3 5 254 3 244 5.80e-68 210
MS.gene069812.t1 MTR_2g060360 40.343 233 138 1 10 242 8 239 5.00e-55 177
MS.gene069812.t1 MTR_5g010150 39.419 241 128 8 21 248 52 287 1.75e-35 128
MS.gene069812.t1 MTR_5g082070 38.723 235 128 6 21 243 55 285 2.46e-35 127
MS.gene069812.t1 MTR_2g094270 37.037 243 136 6 12 238 31 272 4.84e-35 127
MS.gene069812.t1 MTR_7g101190 36.910 233 131 5 21 238 39 270 5.44e-35 127
MS.gene069812.t1 MTR_4g415300 38.034 234 130 6 21 243 56 285 1.44e-34 125
MS.gene069812.t1 MTR_3g118010 37.118 229 130 5 21 238 37 262 1.83e-34 125
MS.gene069812.t1 MTR_8g098375 38.298 235 129 7 21 243 52 282 2.27e-34 125
MS.gene069812.t1 MTR_3g070210 37.872 235 130 6 21 243 55 285 7.35e-34 124
MS.gene069812.t1 MTR_5g063930 34.413 247 145 7 12 255 28 260 7.42e-34 123
MS.gene069812.t1 MTR_4g059390 37.712 236 125 7 21 238 39 270 2.34e-33 122
MS.gene069812.t1 MTR_1g095070 39.779 181 97 4 69 238 25 204 6.74e-31 114
MS.gene069812.t1 MTR_5g079570 33.051 236 146 4 20 255 39 262 1.25e-28 109
MS.gene069812.t1 MTR_2g017620 32.895 228 144 5 16 242 19 238 8.78e-28 107
MS.gene069812.t1 MTR_3g008920 33.475 236 144 6 20 251 25 251 1.01e-27 107
MS.gene069812.t1 MTR_2g017620 32.895 228 144 5 16 242 33 252 1.69e-27 107
MS.gene069812.t1 MTR_2g017590 30.435 253 152 6 1 243 13 251 2.39e-27 106
MS.gene069812.t1 MTR_2g104940 32.735 223 142 3 25 247 84 298 1.75e-26 105
MS.gene069812.t1 MTR_2g017660 30.116 259 159 7 1 253 16 258 2.67e-26 103
MS.gene069812.t1 MTR_4g006730 32.110 218 140 3 25 242 79 288 4.75e-25 101
MS.gene069812.t1 MTR_8g087710 31.718 227 142 5 20 243 38 254 1.01e-24 99.8
MS.gene069812.t1 MTR_2g017620 35.542 166 103 3 78 242 9 171 6.42e-24 95.5
MS.gene069812.t1 MTR_4g084880 29.204 226 151 3 20 243 34 252 9.05e-24 97.1
MS.gene069812.t1 MTR_2g017610 29.583 240 153 6 10 243 24 253 9.34e-24 97.1
MS.gene069812.t1 MTR_2g094270 35.545 211 122 5 12 209 31 240 2.12e-23 95.9
MS.gene069812.t1 MTR_2g017570 29.167 240 154 6 10 243 24 253 6.63e-23 94.7
MS.gene069812.t1 MTR_7g010650 32.051 234 147 7 21 254 37 258 9.10e-23 94.4
MS.gene069812.t1 MTR_8g087720 29.461 241 147 6 12 243 27 253 3.91e-22 92.4
MS.gene069812.t1 MTR_4g006630 31.100 209 136 3 34 242 1 201 5.79e-22 90.9
MS.gene069812.t1 MTR_1g070385 27.897 233 158 5 21 253 62 284 6.11e-22 95.1
MS.gene069812.t1 MTR_3g070210 33.175 211 126 5 21 219 55 262 6.69e-22 92.0
MS.gene069812.t1 MTR_4g006730 31.100 209 136 3 34 242 1 201 7.20e-22 90.9
MS.gene069812.t1 MTR_4g415300 33.898 177 108 4 21 193 56 227 2.13e-19 84.3
MS.gene069812.t1 MTR_1g097840 29.018 224 148 4 25 245 78 293 2.53e-19 85.5
MS.gene069812.t1 MTR_5g010150 36.364 165 95 5 21 179 52 212 3.10e-19 83.6
MS.gene069812.t1 MTR_1g095070 36.478 159 89 4 69 216 25 182 8.99e-19 82.0
MS.gene069812.t1 MTR_8g098375 34.545 165 98 5 21 179 52 212 3.79e-18 81.3
MS.gene069812.t1 MTR_3g070210 33.742 163 100 3 21 178 55 214 5.95e-18 80.1
MS.gene069812.t1 MTR_4g059390 35.294 170 95 5 21 179 39 204 3.05e-17 78.2
MS.gene069812.t1 MTR_4g075590 26.772 254 155 7 11 242 27 271 1.35e-14 72.4
MS.gene069812.t1 MTR_4g075570 28.512 242 144 8 13 234 43 275 1.85e-14 72.0
MS.gene069812.t1 MTR_4g006730 32.335 167 105 3 25 191 79 237 3.81e-14 70.5
MS.gene069812.t1 MTR_8g468730 36.082 97 43 2 146 242 8 85 3.43e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069812.t1 AT1G73190 74.621 264 57 3 2 255 5 268 1.43e-126 360
MS.gene069812.t1 AT1G17810 74.144 263 59 3 2 255 5 267 9.84e-125 355
MS.gene069812.t1 AT4G01470 58.824 255 102 1 1 255 1 252 1.78e-102 298
MS.gene069812.t1 AT2G36830 56.078 255 108 1 1 255 1 251 4.45e-99 290
MS.gene069812.t1 AT3G26520 55.859 256 109 2 1 255 1 253 1.18e-96 283
MS.gene069812.t1 AT3G16240 52.209 249 116 1 7 255 5 250 1.81e-84 253
MS.gene069812.t1 AT5G47450 51.304 230 112 0 5 234 3 232 3.21e-78 236
MS.gene069812.t1 AT4G17340 51.250 240 117 0 5 244 3 242 2.79e-72 221
MS.gene069812.t1 AT2G25810 45.418 251 129 3 4 254 2 244 6.40e-68 210
MS.gene069812.t1 AT3G47440 41.593 226 129 3 18 242 20 243 6.70e-51 167
MS.gene069812.t1 AT2G37170 38.153 249 132 8 8 238 24 268 3.01e-37 132
MS.gene069812.t1 AT2G37170 38.153 249 132 8 8 238 67 311 3.13e-37 134
MS.gene069812.t1 AT2G37180 36.538 260 137 8 3 238 13 268 1.44e-36 131
MS.gene069812.t1 AT3G54820 37.607 234 128 7 21 238 38 269 2.01e-35 128
MS.gene069812.t1 AT2G39010 36.864 236 127 6 21 238 38 269 3.22e-35 127
MS.gene069812.t1 AT3G53420 38.559 236 123 7 21 238 39 270 4.61e-35 127
MS.gene069812.t1 AT3G53420 38.559 236 123 7 21 238 39 270 4.61e-35 127
MS.gene069812.t1 AT1G01620 40.598 234 124 7 21 243 52 281 3.58e-34 124
MS.gene069812.t1 AT2G16850 38.961 231 123 7 21 238 36 261 5.65e-34 124
MS.gene069812.t1 AT4G00430 39.301 229 125 6 21 238 53 278 9.38e-34 124
MS.gene069812.t1 AT2G45960 39.744 234 126 7 21 243 52 281 1.59e-33 123
MS.gene069812.t1 AT4G35100 37.555 229 129 5 21 238 38 263 5.73e-33 121
MS.gene069812.t1 AT4G35100 37.555 229 129 5 21 238 38 263 5.73e-33 121
MS.gene069812.t1 AT3G61430 39.316 234 127 7 21 243 52 281 7.26e-33 121
MS.gene069812.t1 AT3G61430 39.316 234 127 7 21 243 52 281 7.26e-33 121
MS.gene069812.t1 AT4G23400 38.655 238 123 8 21 243 53 282 7.50e-33 121
MS.gene069812.t1 AT5G60660 36.864 236 127 7 21 238 39 270 4.18e-32 119
MS.gene069812.t1 AT1G01620 42.784 194 98 5 61 243 18 209 2.59e-31 115
MS.gene069812.t1 AT5G37820 29.596 223 150 3 21 243 43 258 3.44e-27 106
MS.gene069812.t1 AT5G37820 29.596 223 150 3 21 243 79 294 6.18e-27 106
MS.gene069812.t1 AT1G80760 31.651 218 141 4 25 242 84 293 2.71e-25 101
MS.gene069812.t1 AT5G37810 29.148 223 151 3 21 243 43 258 3.63e-24 98.2
MS.gene069812.t1 AT4G19030 32.035 231 143 6 20 243 54 277 6.17e-24 98.2
MS.gene069812.t1 AT4G18910 31.034 232 144 6 20 243 51 274 1.35e-23 97.1
MS.gene069812.t1 AT1G31885 33.043 230 124 6 20 234 42 256 4.98e-23 95.9
MS.gene069812.t1 AT1G52180 60.811 74 29 0 135 208 43 116 4.70e-22 88.6
MS.gene069812.t1 AT2G45960 35.749 207 119 6 21 216 52 255 2.97e-21 90.5
MS.gene069812.t1 AT2G45960 36.548 197 114 5 21 209 52 245 3.34e-21 90.9
MS.gene069812.t1 AT4G10380 29.911 224 146 4 25 245 82 297 8.41e-21 89.7
MS.gene069812.t1 AT3G06100 26.749 243 167 4 3 243 28 261 1.13e-20 89.0
MS.gene069812.t1 AT1G31885 36.571 175 86 4 78 237 41 205 1.91e-20 88.2
MS.gene069812.t1 AT2G39010 34.911 169 95 4 21 178 38 202 9.37e-20 85.1
MS.gene069812.t1 AT3G06100 27.477 222 150 4 24 243 1 213 1.28e-18 82.4
MS.gene069812.t1 AT4G00430 37.126 167 98 4 21 183 53 216 6.12e-18 80.1
MS.gene069812.t1 AT2G34390 27.556 225 148 6 20 237 47 263 1.02e-12 67.0
MS.gene069812.t1 AT2G34390 28.509 228 134 7 24 237 9 221 1.48e-12 65.9
MS.gene069812.t1 AT4G19030 31.638 177 107 6 20 189 54 223 2.06e-12 65.1
MS.gene069812.t1 AT3G06100 28.261 138 97 2 106 243 45 180 2.61e-11 61.6

Find 75 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCCTGCACTTGCTTT+TGG 0.222455 6.2:+72326094 MS.gene069812:CDS
TATTGGATTGCTCAACTTCT+AGG 0.222866 6.2:+72325311 MS.gene069812:CDS
ACTTTCATCTTTGTCTTTGC+TGG 0.227521 6.2:+72324747 MS.gene069812:CDS
GGCACCACCACTGGATCTTT+TGG 0.236177 6.2:+72326140 MS.gene069812:CDS
TCCTTCGTGCTGTCTACTAT+TGG 0.263158 6.2:+72325294 MS.gene069812:CDS
GGCTCCAATAGTGCCTCTTT+TGG 0.263402 6.2:-72325999 None:intergenic
GAAGGCTCTGGCCTTGCTTT+GGG 0.287910 6.2:+72324771 MS.gene069812:CDS
CTTGTTGGTGGTCCATTTGA+TGG 0.299715 6.2:+72326064 MS.gene069812:CDS
AGAAGGCTCTGGCCTTGCTT+TGG 0.312813 6.2:+72324770 MS.gene069812:CDS
CTTGAGATTATCATGACATT+TGG 0.328426 6.2:+72325941 MS.gene069812:CDS
GCAACTCGTAGGTATGCTTT+TGG 0.330854 6.2:+72324663 MS.gene069812:CDS
GTAGGTAACTAGTAATCTTC+AGG 0.345529 6.2:-72326256 None:intergenic
GTCTTTGCTGGAGAAGGCTC+TGG 0.351672 6.2:+72324759 MS.gene069812:CDS
GATCCCAAAAGAGGCACTAT+TGG 0.355119 6.2:+72325995 MS.gene069812:CDS
ATCTTTGTCTTTGCTGGAGA+AGG 0.361094 6.2:+72324753 MS.gene069812:CDS
GCCATTGCACCTTTAGCAAT+TGG 0.368504 6.2:+72326019 MS.gene069812:CDS
TTGTGGCTGCCCTGTTGCTT+AGG 0.375709 6.2:+72325339 MS.gene069812:CDS
TCTTCCAGCATGCATGTATC+TGG 0.391009 6.2:+72325215 MS.gene069812:CDS
TTTCATCTCGCAAGGGGAAT+TGG 0.392651 6.2:+72325899 MS.gene069812:CDS
TTTCTCAGCTGGTGAATTGT+TGG 0.394785 6.2:+72325151 MS.gene069812:CDS
TAGTGACAAGCCTAAGCAAC+AGG 0.398970 6.2:-72325349 None:intergenic
TTGGCCCTTCTTTGGTGGGA+TGG 0.410290 6.2:+72326113 MS.gene069812:CDS
AAGGTAGCTCTAATAGAATC+TGG 0.430438 6.2:-72324708 None:intergenic
CAAGATTCAGCTTTCTCAGC+TGG 0.433270 6.2:+72325140 MS.gene069812:CDS
CTTCTTTGGTGGGATGGAGA+TGG 0.434317 6.2:+72326119 MS.gene069812:CDS
GTGACATTTGGTGCTCTCAT+AGG 0.439857 6.2:+72325257 MS.gene069812:CDS
GTCAACCCAGCAGTGACATT+TGG 0.440018 6.2:+72325245 MS.gene069812:CDS
TTCATGCATGCTCCATCAAA+TGG 0.444682 6.2:-72326076 None:intergenic
TCCATTCATTGGTGCAGCAT+TGG 0.446273 6.2:+72326168 MS.gene069812:CDS
TTAGCAATTGGACTCATTGT+TGG 0.449771 6.2:+72326031 MS.gene069812:CDS
CATCTCCATCCCACCAAAGA+AGG 0.454457 6.2:-72326118 None:intergenic
GTTGGTGCAAATATCCTTGT+TGG 0.459750 6.2:+72326049 MS.gene069812:CDS
GATGGAGATGGCACCACCAC+TGG 0.475484 6.2:+72326131 MS.gene069812:CDS
AGAGCACCAAATGTCACTGC+TGG 0.484887 6.2:-72325251 None:intergenic
CAGCTGAGAAAGCTGAATCT+TGG 0.491187 6.2:-72325139 None:intergenic
TGTGCATGAGGTGGCTCAGT+TGG 0.498129 6.2:-72326220 None:intergenic
GCCAATGCTGCACCAATGAA+TGG 0.500062 6.2:-72326169 None:intergenic
GTGCATGAGGTGGCTCAGTT+GGG 0.508449 6.2:-72326219 None:intergenic
AGCAAAGACAAAGATGAAAG+TGG 0.508555 6.2:-72324745 None:intergenic
AATCTTCAGGAGCAAGAGGC+TGG 0.526932 6.2:-72326243 None:intergenic
ACTGCAATTGATCCCAAAAG+AGG 0.537671 6.2:+72325986 MS.gene069812:CDS
CAGGAGGGTTTCATCTCGCA+AGG 0.538983 6.2:+72325891 MS.gene069812:CDS
TCAACTTCTAGGTGCTATTG+TGG 0.546373 6.2:+72325322 MS.gene069812:CDS
GCCACCAGATACATGCATGC+TGG 0.551978 6.2:-72325219 None:intergenic
CTTGCGAGATGAAACCCTCC+TGG 0.554995 6.2:-72325890 None:intergenic
TTCTGTTTATTATAGAGACC+AGG 0.564245 6.2:+72325872 MS.gene069812:intron
GAAGGGCCAAAAGCAAGTGC+AGG 0.564294 6.2:-72326100 None:intergenic
TCCAATTGCTAAAGGTGCAA+TGG 0.570541 6.2:-72326020 None:intergenic
AGGGGAATTGGTGTAGGACA+TGG 0.573898 6.2:+72325911 MS.gene069812:CDS
GGTGCAAATATCCTTGTTGG+TGG 0.574728 6.2:+72326052 MS.gene069812:CDS
TAGTAATCTTCAGGAGCAAG+AGG 0.578113 6.2:-72326247 None:intergenic
AGTGGAAGCAAATTCAGCTA+AGG 0.584032 6.2:-72324727 None:intergenic
TCCAGCATGCATGTATCTGG+TGG 0.589012 6.2:+72325218 MS.gene069812:CDS
ACAATGAGTCCAATTGCTAA+AGG 0.602275 6.2:-72326028 None:intergenic
ATGTCACTGCTGGGTTGACA+TGG 0.602359 6.2:-72325241 None:intergenic
ACATTTGGTGCTCTCATAGG+TGG 0.607002 6.2:+72325260 MS.gene069812:CDS
TTGGTGCTCTCATAGGTGGT+AGG 0.611918 6.2:+72325264 MS.gene069812:CDS
TAGCTCTAATAGAATCTGGA+TGG 0.613359 6.2:-72324704 None:intergenic
CATCAAATGGACCACCAACA+AGG 0.619845 6.2:-72326063 None:intergenic
ATCTCCATCCCACCAAAGAA+GGG 0.620130 6.2:-72326117 None:intergenic
ACACTTTGATGGCAACTCGT+AGG 0.632452 6.2:+72324652 None:intergenic
CTCGCAAGGGGAATTGGTGT+AGG 0.633202 6.2:+72325905 MS.gene069812:CDS
AGGAGGGTTTCATCTCGCAA+GGG 0.639920 6.2:+72325892 MS.gene069812:CDS
AGAGGCTGGTGTGCATGAGG+TGG 0.640577 6.2:-72326229 None:intergenic
GTGTATACAAACCCAAAGCA+AGG 0.641996 6.2:-72324782 None:intergenic
GGAGGGTTTCATCTCGCAAG+GGG 0.643382 6.2:+72325893 MS.gene069812:CDS
GACCAACCCAAAAGATCCAG+TGG 0.644182 6.2:-72326147 None:intergenic
TGTTTATTATAGAGACCAGG+AGG 0.648170 6.2:+72325875 MS.gene069812:intron
TAGGCTTGTCACTAATAACA+TGG 0.665439 6.2:+72325358 MS.gene069812:CDS
GCAAGAGGCTGGTGTGCATG+AGG 0.666450 6.2:-72326232 None:intergenic
AGTGACAAGCCTAAGCAACA+GGG 0.669493 6.2:-72325348 None:intergenic
GTTTATTATAGAGACCAGGA+GGG 0.672843 6.2:+72325876 MS.gene069812:intron
GAGCACCAAATGTCACTGCT+GGG 0.683403 6.2:-72325250 None:intergenic
CAACCCAAAAGATCCAGTGG+TGG 0.714046 6.2:-72326144 None:intergenic
TCCAATAGTAGACAGCACGA+AGG 0.754250 6.2:-72325295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACATGATTGAAAAAAA+TGG + chr6.2:72325817-72325836 MS.gene069812:intron 15.0%
!! AGTTAATTAATTATGCAACA+AGG - chr6.2:72324823-72324842 None:intergenic 20.0%
!!! AGATTTTCTCAAATTATTAG+CGG - chr6.2:72324919-72324938 None:intergenic 20.0%
!!! TATCATAGACTCATTTTTAA+TGG + chr6.2:72325522-72325541 MS.gene069812:intron 20.0%
!!! TTAGCATTTGTGTTTATTTT+TGG + chr6.2:72325006-72325025 MS.gene069812:intron 20.0%
! AGAAAGAGTCATCATAATTT+AGG + chr6.2:72325431-72325450 MS.gene069812:intron 25.0%
! AGATCTAACATATTCAAAAG+AGG - chr6.2:72325485-72325504 None:intergenic 25.0%
!! ATTTTCAATAAGAACTCATG+TGG + chr6.2:72325840-72325859 MS.gene069812:intron 25.0%
AAGAGTCATCATAATTTAGG+AGG + chr6.2:72325434-72325453 MS.gene069812:intron 30.0%
CTTCATATTAAAGACATGTC+AGG + chr6.2:72325693-72325712 MS.gene069812:intron 30.0%
CTTGAGATTATCATGACATT+TGG + chr6.2:72325941-72325960 MS.gene069812:CDS 30.0%
GAATATGTTAGATCTGAGTT+TGG + chr6.2:72325490-72325509 MS.gene069812:intron 30.0%
TGAGAAAATCTCATATGTGT+CGG + chr6.2:72324928-72324947 MS.gene069812:intron 30.0%
TTCTGTTTATTATAGAGACC+AGG + chr6.2:72325872-72325891 MS.gene069812:intron 30.0%
! AACATATTCAAAAGAGGCAT+CGG - chr6.2:72325479-72325498 None:intergenic 30.0%
!! AATAGGCTTTAAAGAGTTTC+AGG - chr6.2:72325582-72325601 None:intergenic 30.0%
ACAATGAGTCCAATTGCTAA+AGG - chr6.2:72326031-72326050 None:intergenic 35.0%
ACACCAACACTTCAGATTAA+AGG + chr6.2:72325634-72325653 MS.gene069812:intron 35.0%
ACCTCATTGAATCTTTGACA+AGG + chr6.2:72325556-72325575 MS.gene069812:intron 35.0%
ACTTTCATCTTTGTCTTTGC+TGG + chr6.2:72324747-72324766 MS.gene069812:CDS 35.0%
AGCAAAGACAAAGATGAAAG+TGG - chr6.2:72324748-72324767 None:intergenic 35.0%
GTCATCATAATTTAGGAGGA+AGG + chr6.2:72325438-72325457 MS.gene069812:intron 35.0%
GTTTATTATAGAGACCAGGA+GGG + chr6.2:72325876-72325895 MS.gene069812:intron 35.0%
TAGGCTTGTCACTAATAACA+TGG + chr6.2:72325358-72325377 MS.gene069812:CDS 35.0%
TATTGGATTGCTCAACTTCT+AGG + chr6.2:72325311-72325330 MS.gene069812:CDS 35.0%
TGTTTATTATAGAGACCAGG+AGG + chr6.2:72325875-72325894 MS.gene069812:intron 35.0%
TTAGCAATTGGACTCATTGT+TGG + chr6.2:72326031-72326050 MS.gene069812:CDS 35.0%
! ACACCTTTAATCTGAAGTGT+TGG - chr6.2:72325640-72325659 None:intergenic 35.0%
! TAAGAACTCATGTGGTGTTA+TGG + chr6.2:72325848-72325867 MS.gene069812:intron 35.0%
!! AAGGTAGCTCTAATAGAATC+TGG - chr6.2:72324711-72324730 None:intergenic 35.0%
!! TAGCTCTAATAGAATCTGGA+TGG - chr6.2:72324707-72324726 None:intergenic 35.0%
ACTGCAATTGATCCCAAAAG+AGG + chr6.2:72325986-72326005 MS.gene069812:CDS 40.0%
AGTGGAAGCAAATTCAGCTA+AGG - chr6.2:72324730-72324749 None:intergenic 40.0%
ATCTTTGTCTTTGCTGGAGA+AGG + chr6.2:72324753-72324772 MS.gene069812:CDS 40.0%
ATGGCCACATAGTCATAACA+TGG - chr6.2:72324852-72324871 None:intergenic 40.0%
CATGCCATGTTATGACTATG+TGG + chr6.2:72324845-72324864 MS.gene069812:intron 40.0%
GCCTTGTCAAAGATTCAATG+AGG - chr6.2:72325560-72325579 None:intergenic 40.0%
GGCATGGATTCGTGAATAAT+AGG - chr6.2:72325599-72325618 None:intergenic 40.0%
GTGTATACAAACCCAAAGCA+AGG - chr6.2:72324785-72324804 None:intergenic 40.0%
GTTGGTGCAAATATCCTTGT+TGG + chr6.2:72326049-72326068 MS.gene069812:CDS 40.0%
TAGTAATCTTCAGGAGCAAG+AGG - chr6.2:72326250-72326269 None:intergenic 40.0%
TTCATGCATGCTCCATCAAA+TGG - chr6.2:72326079-72326098 None:intergenic 40.0%
TTTAGGAGGAAGGTGAGAAT+AGG + chr6.2:72325448-72325467 MS.gene069812:intron 40.0%
TTTCTCAGCTGGTGAATTGT+TGG + chr6.2:72325151-72325170 MS.gene069812:CDS 40.0%
! ATGAATCCTGCACTTGCTTT+TGG + chr6.2:72326094-72326113 MS.gene069812:CDS 40.0%
! CATGTCAGGTGTCAGTTTTT+CGG + chr6.2:72325707-72325726 MS.gene069812:intron 40.0%
! TCCAATTGCTAAAGGTGCAA+TGG - chr6.2:72326023-72326042 None:intergenic 40.0%
!! TCAACTTCTAGGTGCTATTG+TGG + chr6.2:72325322-72325341 MS.gene069812:CDS 40.0%
!! TCGTAGGTATGCTTTTGGAA+GGG + chr6.2:72324668-72324687 MS.gene069812:CDS 40.0%
!!! TTTTGGGTTGGTCCATTCAT+TGG + chr6.2:72326157-72326176 MS.gene069812:CDS 40.0%
ACTAAGACACCTCTAATCCG+AGG + chr6.2:72324964-72324983 MS.gene069812:intron 45.0%
AGTGACAAGCCTAAGCAACA+GGG - chr6.2:72325351-72325370 None:intergenic 45.0%
ATCTCCATCCCACCAAAGAA+GGG - chr6.2:72326120-72326139 None:intergenic 45.0%
CAAGATTCAGCTTTCTCAGC+TGG + chr6.2:72325140-72325159 MS.gene069812:CDS 45.0%
CAGCTGAGAAAGCTGAATCT+TGG - chr6.2:72325142-72325161 None:intergenic 45.0%
CATCAAATGGACCACCAACA+AGG - chr6.2:72326066-72326085 None:intergenic 45.0%
GAGGAAGGTGAGAATAGGTT+AGG + chr6.2:72325453-72325472 MS.gene069812:intron 45.0%
GCCATTGCACCTTTAGCAAT+TGG + chr6.2:72326019-72326038 MS.gene069812:CDS 45.0%
GGTGCAAATATCCTTGTTGG+TGG + chr6.2:72326052-72326071 MS.gene069812:CDS 45.0%
TACAAAGCACAGACACTCCT+CGG - chr6.2:72324984-72325003 None:intergenic 45.0%
TAGTGACAAGCCTAAGCAAC+AGG - chr6.2:72325352-72325371 None:intergenic 45.0%
TCCAATAGTAGACAGCACGA+AGG - chr6.2:72325298-72325317 None:intergenic 45.0%
TCCATTCATTGGTGCAGCAT+TGG + chr6.2:72326168-72326187 MS.gene069812:CDS 45.0%
TCCTTCGTGCTGTCTACTAT+TGG + chr6.2:72325294-72325313 MS.gene069812:CDS 45.0%
TCTTCCAGCATGCATGTATC+TGG + chr6.2:72325215-72325234 MS.gene069812:CDS 45.0%
TTTCATCTCGCAAGGGGAAT+TGG + chr6.2:72325899-72325918 MS.gene069812:CDS 45.0%
! CTCGTAGGTATGCTTTTGGA+AGG + chr6.2:72324667-72324686 MS.gene069812:CDS 45.0%
! GCAACTCGTAGGTATGCTTT+TGG + chr6.2:72324663-72324682 MS.gene069812:CDS 45.0%
! GCTCCAATAGTGCCTCTTTT+GGG - chr6.2:72326001-72326020 None:intergenic 45.0%
!! ACATTTGGTGCTCTCATAGG+TGG + chr6.2:72325260-72325279 MS.gene069812:CDS 45.0%
!! ACTTGCTTTTGGCCCTTCTT+TGG + chr6.2:72326105-72326124 MS.gene069812:CDS 45.0%
!! CTTGTTGGTGGTCCATTTGA+TGG + chr6.2:72326064-72326083 MS.gene069812:CDS 45.0%
!! GAAGTGTTGGTGTCGAACAA+TGG - chr6.2:72325627-72325646 None:intergenic 45.0%
!! GATCCCAAAAGAGGCACTAT+TGG + chr6.2:72325995-72326014 MS.gene069812:CDS 45.0%
!! GTGACATTTGGTGCTCTCAT+AGG + chr6.2:72325257-72325276 MS.gene069812:CDS 45.0%
AATCTTCAGGAGCAAGAGGC+TGG - chr6.2:72326246-72326265 None:intergenic 50.0%
AGGAGGGTTTCATCTCGCAA+GGG + chr6.2:72325892-72325911 MS.gene069812:CDS 50.0%
AGGGGAATTGGTGTAGGACA+TGG + chr6.2:72325911-72325930 MS.gene069812:CDS 50.0%
CAACCCAAAAGATCCAGTGG+TGG - chr6.2:72326147-72326166 None:intergenic 50.0%
CATCTCCATCCCACCAAAGA+AGG - chr6.2:72326121-72326140 None:intergenic 50.0%
CTTCTTTGGTGGGATGGAGA+TGG + chr6.2:72326119-72326138 MS.gene069812:CDS 50.0%
GACCAACCCAAAAGATCCAG+TGG - chr6.2:72326150-72326169 None:intergenic 50.0%
GACTATGTGGCCATGAAGCA+CGG + chr6.2:72324858-72324877 MS.gene069812:intron 50.0%
GAGCACCAAATGTCACTGCT+GGG - chr6.2:72325253-72325272 None:intergenic 50.0%
GCCAATGCTGCACCAATGAA+TGG - chr6.2:72326172-72326191 None:intergenic 50.0%
GTCAACCCAGCAGTGACATT+TGG + chr6.2:72325245-72325264 MS.gene069812:CDS 50.0%
TCCAGCATGCATGTATCTGG+TGG + chr6.2:72325218-72325237 MS.gene069812:CDS 50.0%
TGTTCAGTGTCCGTGCTTCA+TGG - chr6.2:72324871-72324890 None:intergenic 50.0%
! ACAGACACTCCTCGGATTAG+AGG - chr6.2:72324976-72324995 None:intergenic 50.0%
! AGAGCACCAAATGTCACTGC+TGG - chr6.2:72325254-72325273 None:intergenic 50.0%
! ATGTCACTGCTGGGTTGACA+TGG - chr6.2:72325244-72325263 None:intergenic 50.0%
! GCACCACCACTGGATCTTTT+GGG + chr6.2:72326141-72326160 MS.gene069812:CDS 50.0%
! GCTTTTGGCCCTTCTTTGGT+GGG + chr6.2:72326109-72326128 MS.gene069812:CDS 50.0%
! GGCTCCAATAGTGCCTCTTT+TGG - chr6.2:72326002-72326021 None:intergenic 50.0%
! TCGAACAATGGTGTCAGGCA+TGG - chr6.2:72325615-72325634 None:intergenic 50.0%
! TGCTTTTGGCCCTTCTTTGG+TGG + chr6.2:72326108-72326127 MS.gene069812:CDS 50.0%
! TGGTGTCGAACAATGGTGTC+AGG - chr6.2:72325620-72325639 None:intergenic 50.0%
! TTGGTGCTCTCATAGGTGGT+AGG + chr6.2:72325264-72325283 MS.gene069812:CDS 50.0%
!! CACCACTGGATCTTTTGGGT+TGG + chr6.2:72326145-72326164 MS.gene069812:CDS 50.0%
!! TGCTTTTGGAAGGGCTGATG+AGG + chr6.2:72324677-72324696 MS.gene069812:CDS 50.0%
CACGGACACTGAACACGACT+CGG + chr6.2:72324876-72324895 MS.gene069812:intron 55.0%
CAGGAGGGTTTCATCTCGCA+AGG + chr6.2:72325891-72325910 MS.gene069812:CDS 55.0%
CTCGCAAGGGGAATTGGTGT+AGG + chr6.2:72325905-72325924 MS.gene069812:CDS 55.0%
CTTGCGAGATGAAACCCTCC+TGG - chr6.2:72325893-72325912 None:intergenic 55.0%
GAAGGGCCAAAAGCAAGTGC+AGG - chr6.2:72326103-72326122 None:intergenic 55.0%
GCCACCAGATACATGCATGC+TGG - chr6.2:72325222-72325241 None:intergenic 55.0%
GGAGGGTTTCATCTCGCAAG+GGG + chr6.2:72325893-72325912 MS.gene069812:CDS 55.0%
GTCTTTGCTGGAGAAGGCTC+TGG + chr6.2:72324759-72324778 MS.gene069812:CDS 55.0%
GTGCATGAGGTGGCTCAGTT+GGG - chr6.2:72326222-72326241 None:intergenic 55.0%
TGTGCATGAGGTGGCTCAGT+TGG - chr6.2:72326223-72326242 None:intergenic 55.0%
TTGGCCCTTCTTTGGTGGGA+TGG + chr6.2:72326113-72326132 MS.gene069812:CDS 55.0%
! GGCACCACCACTGGATCTTT+TGG + chr6.2:72326140-72326159 MS.gene069812:CDS 55.0%
! TTGTGGCTGCCCTGTTGCTT+AGG + chr6.2:72325339-72325358 MS.gene069812:CDS 55.0%
!! AGAAGGCTCTGGCCTTGCTT+TGG + chr6.2:72324770-72324789 MS.gene069812:CDS 55.0%
!! GAAGGCTCTGGCCTTGCTTT+GGG + chr6.2:72324771-72324790 MS.gene069812:CDS 55.0%
AGAGGCTGGTGTGCATGAGG+TGG - chr6.2:72326232-72326251 None:intergenic 60.0%
GATGGAGATGGCACCACCAC+TGG + chr6.2:72326131-72326150 MS.gene069812:CDS 60.0%
GCAAGAGGCTGGTGTGCATG+AGG - chr6.2:72326235-72326254 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 72324660 72326270 72324660 ID=MS.gene069812
chr6.2 mRNA 72324660 72326270 72324660 ID=MS.gene069812.t1;Parent=MS.gene069812
chr6.2 exon 72324660 72324792 72324660 ID=MS.gene069812.t1.exon1;Parent=MS.gene069812.t1
chr6.2 CDS 72324660 72324792 72324660 ID=cds.MS.gene069812.t1;Parent=MS.gene069812.t1
chr6.2 exon 72325129 72325379 72325129 ID=MS.gene069812.t1.exon2;Parent=MS.gene069812.t1
chr6.2 CDS 72325129 72325379 72325129 ID=cds.MS.gene069812.t1;Parent=MS.gene069812.t1
chr6.2 exon 72325887 72326270 72325887 ID=MS.gene069812.t1.exon3;Parent=MS.gene069812.t1
chr6.2 CDS 72325887 72326270 72325887 ID=cds.MS.gene069812.t1;Parent=MS.gene069812.t1
Gene Sequence

>MS.gene069812

ATGGCAACTCGTAGGTATGCTTTTGGAAGGGCTGATGAGGCTTACCATCCAGATTCTATTAGAGCTACCTTAGCTGAATTTGCTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGGTTTGTATACACTCAAAATTAACATATCCTTGTTGCATAATTAATTAACTAGCATGCCATGTTATGACTATGTGGCCATGAAGCACGGACACTGAACACGACTCGGACACTGACATGCAGATACCGCTAATAATTTGAGAAAATCTCATATGTGTCGGTGTTGTATCTGACACTAAGACACCTCTAATCCGAGGAGTGTCTGTGCTTTGTAACTTAGCATTTGTGTTTATTTTTGGTGCATGCATATATATATATATATATATATATATATATATATATATATATTATTATAGTATGTTGATTGTGATTTTTATGCATTGTGTCTCTTTCTTACAGTTAAGATTTACCAAGATTCAGCTTTCTCAGCTGGTGAATTGTTGGCAGTTGCACTAGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCCAGCATGCATGTATCTGGTGGCCATGTCAACCCAGCAGTGACATTTGGTGCTCTCATAGGTGGTAGGATCTCTGTCCTTCGTGCTGTCTACTATTGGATTGCTCAACTTCTAGGTGCTATTGTGGCTGCCCTGTTGCTTAGGCTTGTCACTAATAACATGGTAATCATTTTTTTGATGAATGAGTCATAATTTTTATCATGTGTATCAGATAGAAAGAGTCATCATAATTTAGGAGGAAGGTGAGAATAGGTTAGGCCGATGCCTCTTTTGAATATGTTAGATCTGAGTTTGGTCTATCATCTATCATAGACTCATTTTTAATGGCGAGTTGTCTGACCTCATTGAATCTTTGACAAGGCCTGAAACTCTTTAAAGCCTATTATTCACGAATCCATGCCTGACACCATTGTTCGACACCAACACTTCAGATTAAAGGTGTCACATGCGTAAATGTACATACAAGTATCTGACACTTCATATTAAAGACATGTCAGGTGTCAGTTTTTCGGCTTGTCTATGTCAATACATCATAGAAAATGTAGTAAAAAAAGATTAGATAATATTAACATGATTGAAAACAATAGATTTTCTATAATATTAACATGATTGAAAAAAATGGATTTTCAATAAGAACTCATGTGGTGTTATGGTTTCTGTTTATTATAGAGACCAGGAGGGTTTCATCTCGCAAGGGGAATTGGTGTAGGACATGGACTTATACTTGAGATTATCATGACATTTGGACTAATGTACACAGTATATGCAACTGCAATTGATCCCAAAAGAGGCACTATTGGAGCCATTGCACCTTTAGCAATTGGACTCATTGTTGGTGCAAATATCCTTGTTGGTGGTCCATTTGATGGAGCATGCATGAATCCTGCACTTGCTTTTGGCCCTTCTTTGGTGGGATGGAGATGGCACCACCACTGGATCTTTTGGGTTGGTCCATTCATTGGTGCAGCATTGGCAGCACTCATATATGAATATCTTGTGATCCCAACTGAGCCACCTCATGCACACCAGCCTCTTGCTCCTGAAGATTACTAG
Protein sequence

>MS.gene069812.t1

MATRRYAFGRADEAYHPDSIRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQLLGAIVAALLLRLVTNNMRPGGFHLARGIGVGHGLILEIIMTFGLMYTVYATAIDPKRGTIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHHHWIFWVGPFIGAALAALIYEYLVIPTEPPHAHQPLAPEDY