Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65300.t1 | XP_003612320.1 | 97.5 | 912 | 20 | 1 | 1 | 909 | 11 | 922 | 3.20E-219 | 771.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65300.t1 | Q8S2T0 | 55.6 | 771 | 324 | 6 | 153 | 909 | 22 | 788 | 2.0e-52 | 209.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65300.t1 | G7K011 | 97.5 | 912 | 20 | 1 | 1 | 909 | 11 | 922 | 2.3e-219 | 771.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene65300 | 0.882067 | 1.42E-70 | -1.69E-46 |
| MS.gene049208 | MS.gene65300 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene65300 | 0.812717 | 3.68E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene65300 | 0.827661 | 1.38E-54 | -1.69E-46 |
| MS.gene049585 | MS.gene65300 | 0.848664 | 5.31E-60 | -1.69E-46 |
| MS.gene049744 | MS.gene65300 | 0.831737 | 1.41E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene65300 | 0.828466 | 8.85E-55 | -1.69E-46 |
| MS.gene050084 | MS.gene65300 | 0.811343 | 7.34E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene65300 | 0.824574 | 7.50E-54 | -1.69E-46 |
| MS.gene050224 | MS.gene65300 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene65300 | 0.805367 | 1.38E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene65300 | 0.867156 | 1.68E-65 | -1.69E-46 |
| MS.gene050646 | MS.gene65300 | 0.8119 | 5.55E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene65300 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene65300 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene65300 | 0.871504 | 6.50E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene65300 | 0.809123 | 2.21E-50 | -1.69E-46 |
| MS.gene051365 | MS.gene65300 | 0.806741 | 7.10E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene65300 | 0.834051 | 3.75E-56 | -1.69E-46 |
| MS.gene051642 | MS.gene65300 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene65300 | 0.842618 | 2.32E-58 | -1.69E-46 |
| MS.gene051724 | MS.gene65300 | 0.825817 | 3.81E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene65300 | 0.819813 | 9.53E-53 | -1.69E-46 |
| MS.gene051800 | MS.gene65300 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene051852 | MS.gene65300 | 0.805282 | 1.44E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene65300 | 0.816309 | 5.91E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene65300 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene052168 | MS.gene65300 | 0.819953 | 8.86E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene65300 | 0.877417 | 6.39E-69 | -1.69E-46 |
| MS.gene052397 | MS.gene65300 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene65300 | 0.809414 | 1.91E-50 | -1.69E-46 |
| MS.gene052514 | MS.gene65300 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene65300 | 0.818856 | 1.58E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene65300 | 0.908876 | 1.06E-81 | -1.69E-46 |
| MS.gene052776 | MS.gene65300 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene65300 | 0.84234 | 2.74E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene65300 | 0.819881 | 9.20E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene65300 | 0.829866 | 4.05E-55 | -1.69E-46 |
| MS.gene05315 | MS.gene65300 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene05350 | MS.gene65300 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene05462 | MS.gene65300 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene65300 | 0.817778 | 2.76E-52 | -1.69E-46 |
| MS.gene055310 | MS.gene65300 | 0.808204 | 3.47E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene65300 | 0.844656 | 6.60E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene65300 | 0.865805 | 4.53E-65 | -1.69E-46 |
| MS.gene055314 | MS.gene65300 | 0.843781 | 1.13E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene65300 | 0.838731 | 2.42E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene65300 | 0.842976 | 1.86E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene65300 | 0.845616 | 3.63E-59 | -1.69E-46 |
| MS.gene055864 | MS.gene65300 | 0.852701 | 3.88E-61 | -1.69E-46 |
| MS.gene056045 | MS.gene65300 | 0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene65300 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene65300 | 0.833871 | 4.16E-56 | -1.69E-46 |
| MS.gene056390 | MS.gene65300 | 0.809095 | 2.24E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene65300 | 0.849496 | 3.12E-60 | -1.69E-46 |
| MS.gene056519 | MS.gene65300 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene65300 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene65300 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene057132 | MS.gene65300 | 0.810582 | 1.07E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene65300 | 0.861962 | 7.09E-64 | -1.69E-46 |
| MS.gene057915 | MS.gene65300 | 0.833391 | 5.48E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene65300 | 0.807052 | 6.10E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene65300 | 0.831535 | 1.58E-55 | -1.69E-46 |
| MS.gene058087 | MS.gene65300 | 0.801309 | 9.57E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene65300 | 0.830209 | 3.34E-55 | -1.69E-46 |
| MS.gene058292 | MS.gene65300 | 0.85587 | 4.72E-62 | -1.69E-46 |
| MS.gene058638 | MS.gene65300 | 0.819089 | 1.39E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene65300 | 0.825482 | 4.58E-54 | -1.69E-46 |
| MS.gene058647 | MS.gene65300 | 0.818416 | 1.98E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene65300 | 0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene65300 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene058919 | MS.gene65300 | 0.857353 | 1.73E-62 | -1.69E-46 |
| MS.gene05897 | MS.gene65300 | 0.82832 | 9.60E-55 | -1.69E-46 |
| MS.gene059007 | MS.gene65300 | 0.802195 | 6.30E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene65300 | 0.834192 | 3.45E-56 | -1.69E-46 |
| MS.gene059439 | MS.gene65300 | 0.8302 | 3.36E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene65300 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene65300 | 0.816637 | 4.99E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene65300 | 0.818557 | 1.84E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene65300 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene060191 | MS.gene65300 | 0.80844 | 3.09E-50 | -1.69E-46 |
| MS.gene060380 | MS.gene65300 | 0.827706 | 1.35E-54 | -1.69E-46 |
| MS.gene060400 | MS.gene65300 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene65300 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene060785 | MS.gene65300 | 0.802311 | 5.96E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene65300 | 0.836519 | 8.93E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene65300 | 0.810187 | 1.31E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene65300 | 0.827335 | 1.66E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene65300 | 0.831945 | 1.25E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene65300 | 0.834439 | 2.99E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene65300 | 0.804007 | 2.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008939 | MS.gene65300 | PPI |
| MS.gene00155 | MS.gene65300 | PPI |
| MS.gene041802 | MS.gene65300 | PPI |
| MS.gene02153 | MS.gene65300 | PPI |
| MS.gene069114 | MS.gene65300 | PPI |
| MS.gene070689 | MS.gene65300 | PPI |
| MS.gene55989 | MS.gene65300 | PPI |
| MS.gene65300 | MS.gene070223 | PPI |
| MS.gene058237 | MS.gene65300 | PPI |
| MS.gene061266 | MS.gene65300 | PPI |
| MS.gene047988 | MS.gene65300 | PPI |
| MS.gene65300 | MS.gene61712 | PPI |
| MS.gene046436 | MS.gene65300 | PPI |
| MS.gene65300 | MS.gene065220 | PPI |
| MS.gene027794 | MS.gene65300 | PPI |
| MS.gene02723 | MS.gene65300 | PPI |
| MS.gene00013 | MS.gene65300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65300.t1 | MTR_5g023770 | 97.039 | 912 | 24 | 1 | 1 | 909 | 11 | 922 | 0.0 | 1765 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65300.t1 | AT5G66030 | 63.943 | 771 | 260 | 7 | 153 | 909 | 22 | 788 | 0.0 | 858 |
| MS.gene65300.t1 | AT5G66030 | 62.663 | 766 | 255 | 6 | 153 | 909 | 22 | 765 | 0.0 | 829 |
| MS.gene65300.t1 | AT5G66030 | 63.521 | 710 | 248 | 5 | 153 | 853 | 22 | 729 | 0.0 | 773 |
| MS.gene65300.t1 | AT5G66030 | 61.702 | 658 | 241 | 5 | 153 | 801 | 22 | 677 | 0.0 | 701 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTCTCATTTACTTAA+TGG | 0.104508 | 5.2:+14626288 | MS.gene65300:CDS |
| TTAATATGTACTTCTTATTT+TGG | 0.160688 | 5.2:-14620200 | None:intergenic |
| CACTTTCATCCTTCCTTTGC+TGG | 0.174319 | 5.2:-14614758 | None:intergenic |
| AGCTTCTTCGGATGCAATTC+TGG | 0.218013 | 5.2:-14615366 | None:intergenic |
| GTAAATATTGTATTGGAAAA+TGG | 0.236129 | 5.2:+14614783 | MS.gene65300:CDS |
| TGCTAGCTCTTCCTCCCTTT+GGG | 0.241742 | 5.2:-14624784 | None:intergenic |
| ACCAACTTCTTTCTGTATAC+TGG | 0.244185 | 5.2:-14615255 | None:intergenic |
| ATGTACAGCCTTGCATAAAT+TGG | 0.254936 | 5.2:+14624362 | MS.gene65300:intron |
| TTTGCAGAATTTGGAGAGTT+TGG | 0.258175 | 5.2:+14618314 | MS.gene65300:intron |
| AGAATTCATTCTGAGATTTC+AGG | 0.260515 | 5.2:-14615190 | None:intergenic |
| GAAGTATTGCTACCAGTTAT+TGG | 0.264528 | 5.2:+14625580 | MS.gene65300:CDS |
| GTGCTAGCTCTTCCTCCCTT+TGG | 0.277076 | 5.2:-14624785 | None:intergenic |
| CCATCTGACAAATGCTCCTC+TGG | 0.321478 | 5.2:-14614963 | None:intergenic |
| AAGCTGGGAGGCTGCATCTC+TGG | 0.322039 | 5.2:+14620117 | MS.gene65300:CDS |
| TGCAGTTGCTCTCGGCAATT+TGG | 0.322122 | 5.2:-14620156 | None:intergenic |
| GACTCAAGAGCCTCCTCTTT+AGG | 0.322229 | 5.2:-14617579 | None:intergenic |
| ATTAGTTAGAACCTCTTCTT+TGG | 0.331826 | 5.2:-14620355 | None:intergenic |
| GAGATGGAGGCAGCATCAAC+TGG | 0.349106 | 5.2:+14619043 | MS.gene65300:CDS |
| GATCCTGAAGAGTCGCTTGC+AGG | 0.356621 | 5.2:-14626248 | None:intergenic |
| CATTGCTAAACCCCTCAATC+TGG | 0.360562 | 5.2:-14615220 | None:intergenic |
| GAGATACCATTGAGGATTTA+CGG | 0.361062 | 5.2:+14617544 | MS.gene65300:CDS |
| CTCTGATGGAAATGAAGGTT+TGG | 0.379222 | 5.2:+14615130 | MS.gene65300:CDS |
| CTCTCTGAGCAGCTTGTAGA+AGG | 0.379695 | 5.2:+14615440 | MS.gene65300:CDS |
| AAGTATTGCTACCAGTTATT+GGG | 0.380552 | 5.2:+14625581 | MS.gene65300:CDS |
| ATTCACCTGCAGTGAAGAAA+TGG | 0.390871 | 5.2:-14618385 | None:intergenic |
| GCAATTGTCACTTGCAGAAA+AGG | 0.391238 | 5.2:+14617605 | MS.gene65300:CDS |
| GTCAGATGGAAACGAAGTTC+TGG | 0.395150 | 5.2:+14614977 | MS.gene65300:CDS |
| AACTTGATGCCAAGTTGAAT+AGG | 0.404833 | 5.2:+14615635 | MS.gene65300:CDS |
| AACGAAGGTCCGACTGATAC+TGG | 0.405806 | 5.2:+14614903 | MS.gene65300:CDS |
| AGAAGATATGCAGAAGGAAT+TGG | 0.406447 | 5.2:+14623772 | MS.gene65300:CDS |
| AAGGTGCTTCAAAGCTTCTT+CGG | 0.415250 | 5.2:-14615378 | None:intergenic |
| CCATCTGACAAATGCTCCTC+GGG | 0.415545 | 5.2:-14614879 | None:intergenic |
| TGAAGCAGCATCCCAATAAC+TGG | 0.416643 | 5.2:-14625592 | None:intergenic |
| GCATCTGGTGAAGGTGATAC+TGG | 0.418417 | 5.2:+14614666 | MS.gene65300:CDS |
| ATCTTAAAGCTTCTTGAGAC+AGG | 0.425588 | 5.2:+14625435 | MS.gene65300:CDS |
| CCTAAAAGAGAAAGAGGAAT+GGG | 0.431476 | 5.2:+14623584 | MS.gene65300:CDS |
| CATCTGAGTACGCAATTTGA+AGG | 0.437273 | 5.2:-14615397 | None:intergenic |
| AACAAGAAGTCGATGGCATC+TGG | 0.438022 | 5.2:+14614651 | None:intergenic |
| AGTTGAATAGGCTTCACAAA+AGG | 0.438247 | 5.2:+14615647 | MS.gene65300:CDS |
| AGTCCTGCAAGCGACTCTTC+AGG | 0.438561 | 5.2:+14626245 | MS.gene65300:CDS |
| CGATTCTCTGATGGAAATGA+AGG | 0.440056 | 5.2:+14615125 | MS.gene65300:CDS |
| ATCTCTCATACTGAGGATCT+TGG | 0.441672 | 5.2:-14620316 | None:intergenic |
| TCCATCTGACAAATGCTCCT+CGG | 0.447011 | 5.2:-14614880 | None:intergenic |
| AACGAAGTTCTGGCTGATAC+TGG | 0.448934 | 5.2:+14614987 | MS.gene65300:CDS |
| GAGAATCGATTATCTAATAC+AGG | 0.455565 | 5.2:-14615110 | None:intergenic |
| AATGAAGGTCCGGCTGATAC+TGG | 0.456678 | 5.2:+14614819 | MS.gene65300:CDS |
| GGAGGTTTCTCACTTAAAAC+AGG | 0.457424 | 5.2:+14619108 | MS.gene65300:CDS |
| TGAGTCCATTTCTTCACTGC+AGG | 0.458180 | 5.2:+14618380 | MS.gene65300:CDS |
| AAGTTGGTGGTACGGAAGAC+GGG | 0.460944 | 5.2:+14615270 | MS.gene65300:CDS |
| AAGCTGCTCAGAGAGATCTT+TGG | 0.462974 | 5.2:-14615432 | None:intergenic |
| ACATGGAAAGATCAAAGAAA+AGG | 0.464816 | 5.2:+14625379 | MS.gene65300:CDS |
| TGAAAGCCATGGATGGTGAT+AGG | 0.465393 | 5.2:+14616234 | MS.gene65300:CDS |
| TCTTTCCATGTTGCGAAGCT+CGG | 0.465394 | 5.2:-14625367 | None:intergenic |
| ATGAATCAGCAAAGCAAAGA+TGG | 0.471482 | 5.2:+14615074 | MS.gene65300:CDS |
| GTCACTTGCAGAAAAGGAAC+AGG | 0.473473 | 5.2:+14617611 | MS.gene65300:CDS |
| GCAAGCGACTCTTCAGGATC+TGG | 0.473959 | 5.2:+14626251 | MS.gene65300:CDS |
| TCACGATGAGCTTCTGCAAA+TGG | 0.473971 | 5.2:+14615160 | MS.gene65300:CDS |
| ATCTGATGGAAATGAAGGTC+CGG | 0.480640 | 5.2:+14614809 | MS.gene65300:CDS |
| AGATGCCGAACATCAAATTC+TGG | 0.481340 | 5.2:+14624407 | MS.gene65300:CDS |
| GAATCAGACAAATGCTCCTC+AGG | 0.483026 | 5.2:-14615047 | None:intergenic |
| GCTCTCTGCTAAACATCAAA+AGG | 0.484789 | 5.2:+14618107 | MS.gene65300:CDS |
| CATGGAAAGATCAAAGAAAA+GGG | 0.485019 | 5.2:+14625380 | MS.gene65300:CDS |
| TAGTTGCAATGCTGACTGTT+GGG | 0.488336 | 5.2:-14616174 | None:intergenic |
| CTATACCAGAATTTGATGTT+CGG | 0.489165 | 5.2:-14624412 | None:intergenic |
| GGCTAGACAACAAGCCCAAA+GGG | 0.489632 | 5.2:+14624770 | MS.gene65300:CDS |
| GCAGAATTTGGAGAGTTTGG+AGG | 0.490026 | 5.2:+14618317 | MS.gene65300:intron |
| TTCTTGAAATCCCAGATTGA+GGG | 0.490247 | 5.2:+14615209 | MS.gene65300:CDS |
| TTCTTTCTCGTTATTAGCCA+TGG | 0.491838 | 5.2:-14623338 | None:intergenic |
| GGCTTATCTGATGGAAATGA+AGG | 0.492082 | 5.2:+14614804 | MS.gene65300:CDS |
| GAAGAGTCGCTTGCAGGACT+CGG | 0.492796 | 5.2:-14626242 | None:intergenic |
| GTTATCGATAACAGAAGAAA+GGG | 0.494196 | 5.2:+14623288 | MS.gene65300:CDS |
| GTGTGTAGCTCAAAATAAGC+TGG | 0.495154 | 5.2:+14615576 | MS.gene65300:intron |
| CTCAGCTGCCTTTCTCCTAT+CGG | 0.496439 | 5.2:-14618361 | None:intergenic |
| CTCAGCAGATTCGTTTAACT+CGG | 0.497634 | 5.2:-14616141 | None:intergenic |
| AGGTGATACTGGTGGAAAGA+TGG | 0.501992 | 5.2:+14614677 | MS.gene65300:CDS |
| TGTTATCGATAACAGAAGAA+AGG | 0.505115 | 5.2:+14623287 | MS.gene65300:CDS |
| TCAAAAGAAGGACGCAGACT+TGG | 0.505650 | 5.2:+14623116 | MS.gene65300:CDS |
| AAATCGTCTCCACAGCCAAC+AGG | 0.508271 | 5.2:+14624954 | MS.gene65300:CDS |
| TTAGATAATCGATTCTCTGA+TGG | 0.510758 | 5.2:+14615116 | MS.gene65300:CDS |
| AGAATCTAGAATTGCAGAGA+TGG | 0.511223 | 5.2:+14619027 | MS.gene65300:CDS |
| GTTGAATAGGCTTCACAAAA+GGG | 0.513691 | 5.2:+14615648 | MS.gene65300:CDS |
| ACGCATTCAAGAAGTTCAAA+AGG | 0.518457 | 5.2:+14615678 | MS.gene65300:CDS |
| TCAACACCTAAAAGAGAAAG+AGG | 0.519235 | 5.2:+14623578 | MS.gene65300:CDS |
| TCATATCAGAATCAGACAAA+TGG | 0.519407 | 5.2:-14614734 | None:intergenic |
| GCTAATTCAGGAAGAAATTG+AGG | 0.520210 | 5.2:+14624918 | MS.gene65300:intron |
| CCAGAGGAGCATTTGTCAGA+TGG | 0.521431 | 5.2:+14614963 | MS.gene65300:CDS |
| AAGTGATGTAAATATTGTAT+TGG | 0.523227 | 5.2:+14614776 | MS.gene65300:CDS |
| ATTCTTGAAATCCCAGATTG+AGG | 0.523848 | 5.2:+14615208 | MS.gene65300:CDS |
| TTGTTGCCTATCACCATCCA+TGG | 0.524711 | 5.2:-14616240 | None:intergenic |
| TTTGTGAAGCCTATTCAACT+TGG | 0.524900 | 5.2:-14615644 | None:intergenic |
| GCGTTCATTGCAACCTAAAG+AGG | 0.525275 | 5.2:+14617566 | MS.gene65300:CDS |
| GAAGTTGGTGGTACGGAAGA+CGG | 0.526029 | 5.2:+14615269 | MS.gene65300:CDS |
| CCCGAGGAGCATTTGTCAGA+TGG | 0.527662 | 5.2:+14614879 | MS.gene65300:CDS |
| TTGTGAAAGAACTTCGAGAA+AGG | 0.527882 | 5.2:+14615303 | MS.gene65300:CDS |
| AATTTGATGTTCGGCATCTG+AGG | 0.535891 | 5.2:-14624403 | None:intergenic |
| GGGGTTTAGCAATGTTGAGA+GGG | 0.537454 | 5.2:+14615229 | MS.gene65300:CDS |
| TTGGAAAATGGCTTATCTGA+TGG | 0.538678 | 5.2:+14614795 | MS.gene65300:CDS |
| AACAAGGAAACAAGCAAATG+AGG | 0.539583 | 5.2:+14616208 | MS.gene65300:CDS |
| ATTTCTTTGATTAGGTGAAG+TGG | 0.540575 | 5.2:+14625558 | MS.gene65300:intron |
| ATGGCCAGGTCAGCTTGAAT+CGG | 0.541503 | 5.2:+14620278 | MS.gene65300:intron |
| TCCAGTATACAGAAAGAAGT+TGG | 0.542727 | 5.2:+14615254 | MS.gene65300:CDS |
| TGCACGTATGCAGTTGCTCT+CGG | 0.543333 | 5.2:-14620164 | None:intergenic |
| AAAATGTCAAGCAACAGATA+AGG | 0.544513 | 5.2:+14623523 | MS.gene65300:CDS |
| AGCACGGCTCAGAGCAGCCA+TGG | 0.546795 | 5.2:+14619072 | MS.gene65300:CDS |
| TGCTGTATCCGATAGGAGAA+AGG | 0.548396 | 5.2:+14618353 | MS.gene65300:CDS |
| CATCAACTGGGGAAGCAGCA+CGG | 0.549796 | 5.2:+14619056 | MS.gene65300:CDS |
| AGGGGTTTAGCAATGTTGAG+AGG | 0.551883 | 5.2:+14615228 | MS.gene65300:CDS |
| ATTGCTAAACCCCTCAATCT+GGG | 0.551982 | 5.2:-14615219 | None:intergenic |
| AGACATATACCTGTTGGCTG+TGG | 0.558875 | 5.2:-14624963 | None:intergenic |
| GTGGTCTTGATTGAAGAGAC+TGG | 0.561811 | 5.2:-14624027 | None:intergenic |
| CTAGTTGCAATGCTGACTGT+TGG | 0.563335 | 5.2:-14616175 | None:intergenic |
| AACTAGAGTTAGAGCGAACA+AGG | 0.566053 | 5.2:+14616192 | MS.gene65300:CDS |
| AGCAGCCATGGAAAGTGTGA+AGG | 0.566751 | 5.2:+14619084 | MS.gene65300:CDS |
| ACAGAAAGAAGTTGGTGGTA+CGG | 0.566778 | 5.2:+14615262 | MS.gene65300:CDS |
| TCAAGATCTTCAATCTGCCA+TGG | 0.567592 | 5.2:+14623321 | MS.gene65300:CDS |
| AGTTGAATCCAATTTATGCA+AGG | 0.567595 | 5.2:-14624370 | None:intergenic |
| TGAACGCCGTAAATCCTCAA+TGG | 0.567971 | 5.2:-14617550 | None:intergenic |
| ACCTAAAAGAGAAAGAGGAA+TGG | 0.568959 | 5.2:+14623583 | MS.gene65300:CDS |
| AGATGGAGGCAGCATCAACT+GGG | 0.573919 | 5.2:+14619044 | MS.gene65300:CDS |
| ATTTGATGTTCGGCATCTGA+GGG | 0.574149 | 5.2:-14624402 | None:intergenic |
| ACATGCACTTCTTCAAAAGA+AGG | 0.575291 | 5.2:+14623104 | MS.gene65300:CDS |
| TATGAGAGATGCTGAACTGT+TGG | 0.575729 | 5.2:+14620329 | MS.gene65300:CDS |
| TGCAGATCAGCAGTCTTGAG+AGG | 0.575989 | 5.2:+14623055 | MS.gene65300:intron |
| ACGAGAAAGAACTTGCAGAA+AGG | 0.576540 | 5.2:+14623350 | MS.gene65300:CDS |
| ATCTAGAATTGCAGAGATGG+AGG | 0.576609 | 5.2:+14619030 | MS.gene65300:CDS |
| AAAGTCCGAGCTTCGCAACA+TGG | 0.577308 | 5.2:+14625362 | MS.gene65300:CDS |
| GCAGCCATGGAAAGTGTGAA+GGG | 0.580624 | 5.2:+14619085 | MS.gene65300:CDS |
| AAGTCGATGGCATCTGGTGA+AGG | 0.582381 | 5.2:+14614657 | None:intergenic |
| TTCAAAATGTAGAAGAAACA+TGG | 0.582714 | 5.2:+14623616 | MS.gene65300:CDS |
| TCTATCAGCAAGATCATGAA+AGG | 0.585507 | 5.2:-14623945 | None:intergenic |
| GACTGATACTGGTGGAACGA+TGG | 0.588028 | 5.2:+14614914 | MS.gene65300:CDS |
| GAAAGATCAAAGAAAAGGGA+AGG | 0.590834 | 5.2:+14625384 | MS.gene65300:CDS |
| TCTTGAAATCCCAGATTGAG+GGG | 0.593814 | 5.2:+14615210 | MS.gene65300:CDS |
| GCAGATCAGCAGTCTTGAGA+GGG | 0.593969 | 5.2:+14623056 | MS.gene65300:intron |
| GGCTGATACTGGTGGAACGA+TGG | 0.598449 | 5.2:+14614998 | MS.gene65300:CDS |
| TGGCTAGACAACAAGCCCAA+AGG | 0.600900 | 5.2:+14624769 | MS.gene65300:CDS |
| TGATATGAACCAGCAAAGGA+AGG | 0.603160 | 5.2:+14614749 | MS.gene65300:CDS |
| GAGTCGCTTGCAGGACTCGG+TGG | 0.603972 | 5.2:-14626239 | None:intergenic |
| GCCAGGTCAGCTTGAATCGG+AGG | 0.605175 | 5.2:+14620281 | MS.gene65300:intron |
| CAAAATGATAATTATAACAC+AGG | 0.605324 | 5.2:+14624184 | MS.gene65300:CDS |
| ACAGTTCCACCAGTATCAGC+CGG | 0.609423 | 5.2:-14614828 | None:intergenic |
| AAATGAGGCGTTGAAAGCCA+TGG | 0.618853 | 5.2:+14616223 | MS.gene65300:CDS |
| AGTCGCTTGCAGGACTCGGT+GGG | 0.620079 | 5.2:-14626238 | None:intergenic |
| GTTCAGCATCTCTCATACTG+AGG | 0.620292 | 5.2:-14620323 | None:intergenic |
| ATTCTGATATGAACCAGCAA+AGG | 0.620546 | 5.2:+14614745 | MS.gene65300:CDS |
| GAAGTTCTGGCTGATACTGG+TGG | 0.621730 | 5.2:+14614990 | MS.gene65300:CDS |
| ACTGTTGGCTGCCAAAGAAG+AGG | 0.621928 | 5.2:+14620344 | MS.gene65300:CDS |
| TTCATTGCAACCTAAAGAGG+AGG | 0.621987 | 5.2:+14617569 | MS.gene65300:CDS |
| GAAGGTCCGGCTGATACTGG+TGG | 0.623619 | 5.2:+14614822 | MS.gene65300:CDS |
| GGCTGATACTGGTGGAACTG+TGG | 0.625396 | 5.2:+14614830 | MS.gene65300:CDS |
| GCTGCTTCAGTTTAGTCCAG+AGG | 0.627685 | 5.2:+14625606 | MS.gene65300:CDS |
| ATCGTTCCACCAGTATCAGT+CGG | 0.628423 | 5.2:-14614912 | None:intergenic |
| TCTTGCTGATAGAATGATTG+AGG | 0.629183 | 5.2:+14623955 | MS.gene65300:CDS |
| CAGCCATGGAAAGTGTGAAG+GGG | 0.629398 | 5.2:+14619086 | MS.gene65300:CDS |
| AGGATTGCTTCGAACTGCCG+AGG | 0.631572 | 5.2:+14618059 | MS.gene65300:CDS |
| GTACTCAGATGCAGAAGCAA+AGG | 0.633740 | 5.2:+14615409 | MS.gene65300:CDS |
| TGCTGCAGAAGATATGCAGA+AGG | 0.633937 | 5.2:+14623766 | MS.gene65300:CDS |
| AGAATCTTGAGAAAAGAGAG+AGG | 0.634025 | 5.2:-14626274 | None:intergenic |
| TCAATGATGCTGTATCCGAT+AGG | 0.635857 | 5.2:+14618346 | MS.gene65300:CDS |
| TGAACAACTCAAAGCTCTTG+AGG | 0.642235 | 5.2:+14623155 | MS.gene65300:CDS |
| GCTTCAGTTTAGTCCAGAGG+AGG | 0.643537 | 5.2:+14625609 | MS.gene65300:CDS |
| CAGACTTCGAGATACCATTG+AGG | 0.644254 | 5.2:+14617536 | MS.gene65300:intron |
| AGCCATGGAAAGTGTGAAGG+GGG | 0.645092 | 5.2:+14619087 | MS.gene65300:CDS |
| AGTTGGTGGTACGGAAGACG+GGG | 0.650080 | 5.2:+14615271 | MS.gene65300:CDS |
| AGTATACAGAAAGAAGTTGG+TGG | 0.653400 | 5.2:+14615257 | MS.gene65300:CDS |
| TCTGGTGAAGGTGATACTGG+TGG | 0.663250 | 5.2:+14614669 | MS.gene65300:CDS |
| GAGGCGTTGAAAGCCATGGA+TGG | 0.667270 | 5.2:+14616227 | MS.gene65300:CDS |
| CATTTGTCAGATGGAAACGA+AGG | 0.675140 | 5.2:+14614888 | MS.gene65300:CDS |
| ACAAGATTCGTCTAAACCCG+AGG | 0.677394 | 5.2:+14614863 | MS.gene65300:CDS |
| GAAGGTCCGACTGATACTGG+TGG | 0.678137 | 5.2:+14614906 | MS.gene65300:CDS |
| ACAACTCAAAGCTCTTGAGG+AGG | 0.681638 | 5.2:+14623158 | MS.gene65300:CDS |
| TAGACAACAAGCCCAAAGGG+AGG | 0.685887 | 5.2:+14624773 | MS.gene65300:CDS |
| GAACTTGGCAGTCAGATGCG+AGG | 0.690916 | 5.2:+14623718 | MS.gene65300:intron |
| ACAAGATTCGTCAAAACCTG+AGG | 0.691768 | 5.2:+14615031 | MS.gene65300:CDS |
| ACAAGATTCATGTAAACCAG+AGG | 0.708170 | 5.2:+14614947 | MS.gene65300:CDS |
| CAGATGCTGGAAGATATGAG+AGG | 0.711762 | 5.2:+14618039 | MS.gene65300:intron |
| CTAAAAGAGAAAGAGGAATG+GGG | 0.715540 | 5.2:+14623585 | MS.gene65300:CDS |
| GATGGAGGCAGCATCAACTG+GGG | 0.716627 | 5.2:+14619045 | MS.gene65300:CDS |
| AAAAGAAAGGGAAAGCTGGG+AGG | 0.732734 | 5.2:+14620105 | MS.gene65300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 14614663 | 14626307 | 14614663 | ID=MS.gene65300 |
| chr5.2 | mRNA | 14614663 | 14626307 | 14614663 | ID=MS.gene65300.t1;Parent=MS.gene65300 |
| chr5.2 | exon | 14614663 | 14615461 | 14614663 | ID=MS.gene65300.t1.exon1;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14614663 | 14615461 | 14614663 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14615584 | 14615699 | 14615584 | ID=MS.gene65300.t1.exon2;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14615584 | 14615699 | 14615584 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14616113 | 14616282 | 14616113 | ID=MS.gene65300.t1.exon3;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14616113 | 14616282 | 14616113 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14617539 | 14617632 | 14617539 | ID=MS.gene65300.t1.exon4;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14617539 | 14617632 | 14617539 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14618042 | 14618128 | 14618042 | ID=MS.gene65300.t1.exon5;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14618042 | 14618128 | 14618042 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14618321 | 14618401 | 14618321 | ID=MS.gene65300.t1.exon6;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14618321 | 14618401 | 14618321 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14619010 | 14619135 | 14619010 | ID=MS.gene65300.t1.exon7;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14619010 | 14619135 | 14619010 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14620103 | 14620211 | 14620103 | ID=MS.gene65300.t1.exon8;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14620103 | 14620211 | 14620103 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14620286 | 14620365 | 14620286 | ID=MS.gene65300.t1.exon9;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14620286 | 14620365 | 14620286 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14623060 | 14623188 | 14623060 | ID=MS.gene65300.t1.exon10;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14623060 | 14623188 | 14623060 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14623271 | 14623371 | 14623271 | ID=MS.gene65300.t1.exon11;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14623271 | 14623371 | 14623271 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14623509 | 14623642 | 14623509 | ID=MS.gene65300.t1.exon12;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14623509 | 14623642 | 14623509 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14623729 | 14623826 | 14623729 | ID=MS.gene65300.t1.exon13;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14623729 | 14623826 | 14623729 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14623932 | 14624051 | 14623932 | ID=MS.gene65300.t1.exon14;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14623932 | 14624051 | 14623932 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14624178 | 14624205 | 14624178 | ID=MS.gene65300.t1.exon15;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14624178 | 14624205 | 14624178 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14624370 | 14624428 | 14624370 | ID=MS.gene65300.t1.exon16;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14624370 | 14624428 | 14624370 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14624765 | 14624836 | 14624765 | ID=MS.gene65300.t1.exon17;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14624765 | 14624836 | 14624765 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14624928 | 14624975 | 14624928 | ID=MS.gene65300.t1.exon18;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14624928 | 14624975 | 14624928 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14625351 | 14625456 | 14625351 | ID=MS.gene65300.t1.exon19;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14625351 | 14625456 | 14625351 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14625572 | 14625630 | 14625572 | ID=MS.gene65300.t1.exon20;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14625572 | 14625630 | 14625572 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| chr5.2 | exon | 14626194 | 14626307 | 14626194 | ID=MS.gene65300.t1.exon21;Parent=MS.gene65300.t1 |
| chr5.2 | CDS | 14626194 | 14626307 | 14626194 | ID=cds.MS.gene65300.t1;Parent=MS.gene65300.t1 |
| Gene Sequence |
| Protein sequence |
