Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78951.t1 | XP_003612810.1 | 94.4 | 287 | 16 | 0 | 1 | 287 | 1 | 287 | 5.00E-150 | 540.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78951.t1 | G7KCC3 | 94.4 | 287 | 16 | 0 | 1 | 287 | 1 | 287 | 3.6e-150 | 540.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene78951 | 0.804748 | 1.86E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene78951 | 0.847457 | 1.14E-59 | -1.69E-46 |
| MS.gene049452 | MS.gene78951 | 0.819537 | 1.10E-52 | -1.69E-46 |
| MS.gene050026 | MS.gene78951 | 0.81384 | 2.09E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene78951 | 0.809144 | 2.19E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene78951 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene051332 | MS.gene78951 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene78951 | 0.82341 | 1.41E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene78951 | 0.815477 | 9.06E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene78951 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene78951 | 0.836055 | 1.17E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene78951 | 0.844871 | 5.78E-59 | -1.69E-46 |
| MS.gene052584 | MS.gene78951 | 0.846269 | 2.42E-59 | -1.69E-46 |
| MS.gene052867 | MS.gene78951 | 0.814366 | 1.60E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene78951 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene78951 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene78951 | 0.809033 | 2.31E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene78951 | 0.854084 | 1.56E-61 | -1.69E-46 |
| MS.gene053321 | MS.gene78951 | 0.819015 | 1.45E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene78951 | 0.811043 | 8.53E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene78951 | 0.809706 | 1.66E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene78951 | 0.817264 | 3.61E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene78951 | -0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene78951 | 0.807906 | 4.02E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene78951 | 0.829386 | 5.30E-55 | -1.69E-46 |
| MS.gene054657 | MS.gene78951 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene054658 | MS.gene78951 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene054994 | MS.gene78951 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene78951 | 0.82116 | 4.68E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene78951 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene78951 | 0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene78951 | 0.806405 | 8.36E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene78951 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene78951 | 0.818795 | 1.63E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene78951 | 0.82561 | 4.27E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene78951 | 0.801961 | 7.03E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene78951 | 0.800543 | 1.37E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene78951 | 0.804349 | 2.25E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene78951 | 0.815741 | 7.92E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene78951 | 0.814217 | 1.72E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene78951 | 0.80415 | 2.48E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene78951 | 0.814514 | 1.48E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene78951 | 0.806354 | 8.57E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene78951 | 0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene78951 | 0.804237 | 2.38E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene78951 | 0.807243 | 5.56E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene78951 | 0.80029 | 1.55E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene78951 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene78951 | 0.837896 | 3.97E-57 | -1.69E-46 |
| MS.gene057314 | MS.gene78951 | 0.822941 | 1.81E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene78951 | 0.825525 | 4.47E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene78951 | 0.822834 | 1.92E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene78951 | 0.815057 | 1.12E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene78951 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene78951 | 0.827779 | 1.30E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene78951 | 0.815064 | 1.12E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene78951 | 0.808051 | 3.75E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene78951 | 0.847502 | 1.11E-59 | -1.69E-46 |
| MS.gene05954 | MS.gene78951 | 0.817904 | 2.59E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene78951 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene05979 | MS.gene78951 | 0.804403 | 2.20E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene78951 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene78951 | 0.810093 | 1.37E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene78951 | 0.806769 | 7.00E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene78951 | 0.807247 | 5.55E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene78951 | 0.800965 | 1.13E-48 | -1.69E-46 |
| MS.gene060572 | MS.gene78951 | 0.802632 | 5.12E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene78951 | -0.808389 | 3.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78951.t1 | MTR_5g029310 | 94.425 | 287 | 16 | 0 | 1 | 287 | 1 | 287 | 0.0 | 538 |
| MS.gene78951.t1 | MTR_5g029310 | 94.097 | 288 | 16 | 1 | 1 | 287 | 1 | 288 | 0.0 | 534 |
| MS.gene78951.t1 | MTR_5g029290 | 54.737 | 95 | 31 | 2 | 143 | 237 | 43 | 125 | 8.41e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAACAACGATTTC+TGG | 0.136302 | 5.3:-18257100 | MS.gene78951:CDS |
| AGAAAATCATGAACCTAGTT+TGG | 0.273695 | 5.3:-18257572 | MS.gene78951:CDS |
| TCCAACTTTGAATCAATATC+AGG | 0.279193 | 5.3:+18257595 | None:intergenic |
| TGGGAACAAATTAATCAATA+TGG | 0.280822 | 5.3:-18257427 | MS.gene78951:CDS |
| GAATACGGCACACCAGAATT+TGG | 0.296018 | 5.3:+18257373 | None:intergenic |
| AATTCTGGTGTGCCGTATTC+TGG | 0.297742 | 5.3:-18257370 | MS.gene78951:CDS |
| GAAACTCAAAATGCGCATAA+TGG | 0.300826 | 5.3:-18257532 | MS.gene78951:CDS |
| GTAGCAACTGGGCCAAATTC+TGG | 0.314443 | 5.3:-18257385 | MS.gene78951:CDS |
| GCCGAGTCACCAATTTGTTC+AGG | 0.345604 | 5.3:+18255419 | None:intergenic |
| TGGGGAAAGATGGAGATCTA+TGG | 0.359011 | 5.3:-18257928 | MS.gene78951:CDS |
| CCTAGTTTGGATTCAACAAT+TGG | 0.367751 | 5.3:-18257559 | MS.gene78951:CDS |
| CAACACGAACACACAACATT+TGG | 0.372709 | 5.3:+18257307 | None:intergenic |
| GATTCATGTGCATCGGTTCC+AGG | 0.375326 | 5.3:-18257259 | MS.gene78951:CDS |
| GGTAATAAAGTGTTGATTCC+TGG | 0.383675 | 5.3:-18257178 | MS.gene78951:CDS |
| AAACTCAAAATGCGCATAAT+GGG | 0.383921 | 5.3:-18257531 | MS.gene78951:CDS |
| AATTCTGAACCTGAACAAAT+TGG | 0.386228 | 5.3:-18255428 | MS.gene78951:CDS |
| AATCAACAATATGTAGCAAC+TGG | 0.392604 | 5.3:-18257397 | MS.gene78951:CDS |
| GGTTGTTCTGTTGGTGGGTC+GGG | 0.402623 | 5.3:-18257238 | MS.gene78951:CDS |
| CCAATTGTTGAATCCAAACT+AGG | 0.426608 | 5.3:+18257559 | None:intergenic |
| AACAATCAATTGGAAATAGA+AGG | 0.427500 | 5.3:-18254842 | MS.gene78951:CDS |
| CTGAATGCTTGGTATTCAGC+TGG | 0.428215 | 5.3:-18255377 | MS.gene78951:CDS |
| TATCTTGCGGAACAATCAAT+TGG | 0.433676 | 5.3:-18254852 | MS.gene78951:CDS |
| TAATGATTGTACTGTGGAAA+AGG | 0.434438 | 5.3:-18257200 | MS.gene78951:CDS |
| TATTCAGCTGGCTTCCATAC+CGG | 0.442511 | 5.3:-18255365 | MS.gene78951:CDS |
| TCTGTTGGTGGGTCGGGTGT+TGG | 0.454309 | 5.3:-18257232 | MS.gene78951:CDS |
| TTCCAGGTTGTTCTGTTGGT+GGG | 0.456539 | 5.3:-18257243 | MS.gene78951:CDS |
| TTACTGCTGTTCTGAATGCT+TGG | 0.464273 | 5.3:-18255388 | MS.gene78951:CDS |
| AAATTAATCAATATGGTGGT+TGG | 0.465873 | 5.3:-18257420 | MS.gene78951:CDS |
| AGGTTGTTCTGTTGGTGGGT+CGG | 0.472721 | 5.3:-18257239 | MS.gene78951:CDS |
| GATGTCTGCACAGCAAGTTT+CGG | 0.479059 | 5.3:-18257332 | MS.gene78951:CDS |
| GTTCCAGGTTGTTCTGTTGG+TGG | 0.489087 | 5.3:-18257244 | MS.gene78951:CDS |
| TCCTGATATTGATTCAAAGT+TGG | 0.501063 | 5.3:-18257596 | MS.gene78951:CDS |
| CGACGCAATCTCTTCTTACA+AGG | 0.504755 | 5.3:-18257876 | MS.gene78951:intron |
| ATTCAGCTGGCTTCCATACC+GGG | 0.504838 | 5.3:-18255364 | MS.gene78951:CDS |
| TCGGTTCCAGGTTGTTCTGT+TGG | 0.514952 | 5.3:-18257247 | MS.gene78951:CDS |
| ACCTGAACAAATTGGTGACT+CGG | 0.515496 | 5.3:-18255420 | MS.gene78951:CDS |
| TAATCTTGACCACCAGAATA+CGG | 0.519158 | 5.3:+18257358 | None:intergenic |
| GGAGATGTTAACGTAAATGA+AGG | 0.534440 | 5.3:-18257079 | MS.gene78951:intron |
| TTGAAATTTCAGCTACTACA+AGG | 0.534812 | 5.3:-18257723 | MS.gene78951:intron |
| AATGATTGTACTGTGGAAAA+GGG | 0.543708 | 5.3:-18257199 | MS.gene78951:CDS |
| GGGGAAAGATGGAGATCTAT+GGG | 0.544426 | 5.3:-18257927 | MS.gene78951:CDS |
| AAGATTCGTGAGATGGCGAT+GGG | 0.550773 | 5.3:-18257145 | MS.gene78951:CDS |
| TGCTGTGGATTCATGTGCAT+CGG | 0.571171 | 5.3:-18257266 | MS.gene78951:CDS |
| TGCTGAGTACTATGAACTTG+AGG | 0.587433 | 5.3:-18257467 | MS.gene78951:CDS |
| AATGGGTATTCTTATGAACA+AGG | 0.591660 | 5.3:-18257514 | MS.gene78951:CDS |
| GTGTTGATTCCTGGTGGAGA+TGG | 0.591707 | 5.3:-18257169 | MS.gene78951:CDS |
| TAAGATTCGTGAGATGGCGA+TGG | 0.591727 | 5.3:-18257146 | MS.gene78951:CDS |
| AGATGGTAAGATTCGTGAGA+TGG | 0.593594 | 5.3:-18257152 | MS.gene78951:CDS |
| GCTCAAACAATGGGGAAAGA+TGG | 0.595496 | 5.3:-18257938 | None:intergenic |
| GAACAAATTAATCAATATGG+TGG | 0.602298 | 5.3:-18257424 | MS.gene78951:CDS |
| GATTCGTGAGATGGCGATGG+GGG | 0.607896 | 5.3:-18257143 | MS.gene78951:CDS |
| CGAATCTTACCATCTCCACC+AGG | 0.611734 | 5.3:+18257160 | None:intergenic |
| GACCCACCAACAGAACAACC+TGG | 0.618790 | 5.3:+18257241 | None:intergenic |
| ACAAATTGGTGACTCGGCAA+CGG | 0.624660 | 5.3:-18255414 | MS.gene78951:CDS |
| TGATGATAACAGGTATCTTG+CGG | 0.627944 | 5.3:-18254865 | MS.gene78951:intron |
| ATCAACAATATGTAGCAACT+GGG | 0.639249 | 5.3:-18257396 | MS.gene78951:CDS |
| AATAAAGTGTTGATTCCTGG+TGG | 0.645556 | 5.3:-18257175 | MS.gene78951:CDS |
| TCTGGTGTGCCGTATTCTGG+TGG | 0.665142 | 5.3:-18257367 | MS.gene78951:CDS |
| AGATTCGTGAGATGGCGATG+GGG | 0.684582 | 5.3:-18257144 | MS.gene78951:CDS |
| AGCTTGTAATGATTGTACTG+TGG | 0.719245 | 5.3:-18257206 | MS.gene78951:CDS |
| ACAGCACATTGACTAAAACA+CGG | 0.730291 | 5.3:+18257283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAATCAATTATGATTA+GGG | + | chr5.3:18256411-18256430 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAATACGTATC+TGG | - | chr5.3:18257548-18257567 | MS.gene78951:CDS | 15.0% |
| !! | TTACTTAATCAATTATGATT+AGG | + | chr5.3:18256412-18256431 | None:intergenic | 15.0% |
| !!! | GATTAATCAATTGATTTTTT+GGG | - | chr5.3:18256869-18256888 | MS.gene78951:intron | 15.0% |
| !!! | TACTTTTTTGTATAGATAAA+TGG | - | chr5.3:18257218-18257237 | MS.gene78951:CDS | 15.0% |
| !!! | TGATTAATCAATTGATTTTT+TGG | - | chr5.3:18256868-18256887 | MS.gene78951:intron | 15.0% |
| !! | ACCATAATATAAGGAATTTA+GGG | + | chr5.3:18256461-18256480 | None:intergenic | 20.0% |
| !! | ATTAAAGTTATGATGATAAC+AGG | - | chr5.3:18257887-18257906 | MS.gene78951:CDS | 20.0% |
| !! | GCATATTAAACATTAAAGAA+CGG | + | chr5.3:18257104-18257123 | None:intergenic | 20.0% |
| !! | TAACTTTAATGATTATACGA+AGG | + | chr5.3:18257877-18257896 | None:intergenic | 20.0% |
| !! | TACCATAATATAAGGAATTT+AGG | + | chr5.3:18256462-18256481 | None:intergenic | 20.0% |
| !! | TATATTCAATAACAAAAGCA+TGG | + | chr5.3:18255801-18255820 | None:intergenic | 20.0% |
| !! | TATTACTGAAGATAAATGTT+AGG | - | chr5.3:18256240-18256259 | MS.gene78951:intron | 20.0% |
| !! | TTATGTAATTTGATGAATGA+AGG | - | chr5.3:18256993-18257012 | MS.gene78951:intron | 20.0% |
| !!! | CGATTTTTTTGAAATTAAAC+TGG | + | chr5.3:18255071-18255090 | None:intergenic | 20.0% |
| !!! | TGTTCTATTGTTGTTATTTT+TGG | + | chr5.3:18256268-18256287 | None:intergenic | 20.0% |
| ! | AAATTAATCAATATGGTGGT+TGG | - | chr5.3:18255342-18255361 | MS.gene78951:intron | 25.0% |
| ! | AACAATCAATTGGAAATAGA+AGG | - | chr5.3:18257920-18257939 | MS.gene78951:CDS | 25.0% |
| ! | ACCCTAAATTCCTTATATTA+TGG | - | chr5.3:18256457-18256476 | MS.gene78951:intron | 25.0% |
| ! | AGGAAAAAAGGTTGAAAATT+TGG | - | chr5.3:18255315-18255334 | MS.gene78951:intron | 25.0% |
| ! | AGTAGTACATGTATATTGTT+AGG | - | chr5.3:18256166-18256185 | MS.gene78951:intron | 25.0% |
| ! | ATCAAAATATAGGAAATGAG+AGG | + | chr5.3:18256815-18256834 | None:intergenic | 25.0% |
| ! | ATCTTTCTGTTCTCATAATT+CGG | + | chr5.3:18256195-18256214 | None:intergenic | 25.0% |
| ! | GAACAAATTAATCAATATGG+TGG | - | chr5.3:18255338-18255357 | MS.gene78951:intron | 25.0% |
| ! | GAATTTAATTGAGTAGGAAA+TGG | + | chr5.3:18254917-18254936 | None:intergenic | 25.0% |
| ! | GATTGATTATTAATTGACTG+TGG | - | chr5.3:18256317-18256336 | MS.gene78951:intron | 25.0% |
| ! | GGAAAAAAGGTTGAAAATTT+GGG | - | chr5.3:18255316-18255335 | MS.gene78951:intron | 25.0% |
| ! | GTAACTGTTACCATAATATA+AGG | + | chr5.3:18256470-18256489 | None:intergenic | 25.0% |
| ! | TATTAGATCTTTCACTTCTT+AGG | - | chr5.3:18257129-18257148 | MS.gene78951:CDS | 25.0% |
| ! | TCAAAATATAGGAAATGAGA+GGG | + | chr5.3:18256814-18256833 | None:intergenic | 25.0% |
| ! | TCATAAATCAATTCCTCATT+AGG | - | chr5.3:18256590-18256609 | MS.gene78951:intron | 25.0% |
| ! | TGATCACATAAAAAAATCCT+TGG | + | chr5.3:18256103-18256122 | None:intergenic | 25.0% |
| ! | TGGGAACAAATTAATCAATA+TGG | - | chr5.3:18255335-18255354 | MS.gene78951:intron | 25.0% |
| ! | TGTTCATATAACCATGAATT+TGG | + | chr5.3:18255946-18255965 | None:intergenic | 25.0% |
| ! | TTAATGATTATACGAAGGAT+AGG | + | chr5.3:18257872-18257891 | None:intergenic | 25.0% |
| ! | TTTCTGCTGAATAAGAAAAA+GGG | + | chr5.3:18254964-18254983 | None:intergenic | 25.0% |
| !! | AAATGTGGTTTTTGTAGTTA+AGG | - | chr5.3:18255840-18255859 | MS.gene78951:intron | 25.0% |
| !! | TTTTCTGCTGAATAAGAAAA+AGG | + | chr5.3:18254965-18254984 | None:intergenic | 25.0% |
| !!! | AGGATTTTTTTATGTGATCA+TGG | - | chr5.3:18256103-18256122 | MS.gene78951:intron | 25.0% |
| !!! | AGTTGTTTTCTTGAAATGAA+AGG | - | chr5.3:18255919-18255938 | MS.gene78951:intron | 25.0% |
| !!! | CTTTTAAGTAGGTTTAGTTT+TGG | - | chr5.3:18257581-18257600 | MS.gene78951:CDS | 25.0% |
| !!! | GAAATTAGGTTGAATTGAAA+GGG | + | chr5.3:18254939-18254958 | None:intergenic | 25.0% |
| !!! | TGAAATTAGGTTGAATTGAA+AGG | + | chr5.3:18254940-18254959 | None:intergenic | 25.0% |
| !!! | TTCTGATTCTTGTTTGTTTT+TGG | + | chr5.3:18255000-18255019 | None:intergenic | 25.0% |
| AAACTCAAAATGCGCATAAT+GGG | - | chr5.3:18255231-18255250 | MS.gene78951:intron | 30.0% | |
| AAATGAAAGGACCAAATTCA+TGG | - | chr5.3:18255932-18255951 | MS.gene78951:intron | 30.0% | |
| AATCAACAATATGTAGCAAC+TGG | - | chr5.3:18255365-18255384 | MS.gene78951:CDS | 30.0% | |
| AATGATTGTACTGTGGAAAA+GGG | - | chr5.3:18255563-18255582 | MS.gene78951:intron | 30.0% | |
| AATGGGTATTCTTATGAACA+AGG | - | chr5.3:18255248-18255267 | MS.gene78951:intron | 30.0% | |
| AATTCTGAACCTGAACAAAT+TGG | - | chr5.3:18257334-18257353 | MS.gene78951:CDS | 30.0% | |
| ACTAAGTACGAAGATATTCT+TGG | - | chr5.3:18257245-18257264 | MS.gene78951:CDS | 30.0% | |
| ACTATGAACTTGAGGAAAAA+AGG | - | chr5.3:18255303-18255322 | MS.gene78951:intron | 30.0% | |
| ACTATTAGAACAACGATTTC+TGG | - | chr5.3:18255662-18255681 | MS.gene78951:intron | 30.0% | |
| AGAAAATCATGAACCTAGTT+TGG | - | chr5.3:18255190-18255209 | MS.gene78951:intron | 30.0% | |
| AGAATAAACTTTCCACACTT+TGG | - | chr5.3:18256553-18256572 | MS.gene78951:intron | 30.0% | |
| ATAACATGCTTCTACAAACA+TGG | + | chr5.3:18257062-18257081 | None:intergenic | 30.0% | |
| ATCAACAATATGTAGCAACT+GGG | - | chr5.3:18255366-18255385 | MS.gene78951:CDS | 30.0% | |
| ATCTTTCACTTCTTAGGTTT+AGG | - | chr5.3:18257135-18257154 | MS.gene78951:CDS | 30.0% | |
| ATTCTCTCGTATAGAAAATG+AGG | + | chr5.3:18257471-18257490 | None:intergenic | 30.0% | |
| CAAACCCAAAGAATATCAAA+AGG | + | chr5.3:18256076-18256095 | None:intergenic | 30.0% | |
| CTAAGTACGAAGATATTCTT+GGG | - | chr5.3:18257246-18257265 | MS.gene78951:CDS | 30.0% | |
| GAAAGGGAATTTAATTGAGT+AGG | + | chr5.3:18254923-18254942 | None:intergenic | 30.0% | |
| GAATAAACTTTCCACACTTT+GGG | - | chr5.3:18256554-18256573 | MS.gene78951:intron | 30.0% | |
| TAAGAAAAAGGGGTGAAATT+AGG | + | chr5.3:18254953-18254972 | None:intergenic | 30.0% | |
| TAATGATTGTACTGTGGAAA+AGG | - | chr5.3:18255562-18255581 | MS.gene78951:intron | 30.0% | |
| TCCAACTTTGAATCAATATC+AGG | + | chr5.3:18255170-18255189 | None:intergenic | 30.0% | |
| TCTTTCTGTTCTCATAATTC+GGG | + | chr5.3:18256194-18256213 | None:intergenic | 30.0% | |
| TGTGGAAAGTTTATTCTAGA+AGG | + | chr5.3:18256550-18256569 | None:intergenic | 30.0% | |
| TGTTAACGTAAATGAAGGTA+AGG | - | chr5.3:18255688-18255707 | MS.gene78951:intron | 30.0% | |
| TTCTCCTTGATACAACAAAA+CGG | + | chr5.3:18255879-18255898 | None:intergenic | 30.0% | |
| TTCTGCTGAATAAGAAAAAG+GGG | + | chr5.3:18254963-18254982 | None:intergenic | 30.0% | |
| TTGAAATTTCAGCTACTACA+AGG | - | chr5.3:18255039-18255058 | MS.gene78951:intron | 30.0% | |
| TTTGACAAAAACTTACTTCC+CGG | + | chr5.3:18257419-18257438 | None:intergenic | 30.0% | |
| ! | AATATAAGGAATTTAGGGTG+AGG | + | chr5.3:18256456-18256475 | None:intergenic | 30.0% |
| ! | GAATTTAGAGCAATAGAGAA+AGG | - | chr5.3:18256292-18256311 | MS.gene78951:intron | 30.0% |
| ! | GTGGAAAGTTTATTCTAGAA+GGG | + | chr5.3:18256549-18256568 | None:intergenic | 30.0% |
| ! | TCAACGTTTTCTTCAATGAT+TGG | + | chr5.3:18255023-18255042 | None:intergenic | 30.0% |
| ! | TGGAAAGTTTATTCTAGAAG+GGG | + | chr5.3:18256548-18256567 | None:intergenic | 30.0% |
| ! | TGTGCCTTTTGATATTCTTT+GGG | - | chr5.3:18256069-18256088 | MS.gene78951:intron | 30.0% |
| ! | TGTTTGTAGAAGCATGTTAT+TGG | - | chr5.3:18257062-18257081 | MS.gene78951:intron | 30.0% |
| ! | TTGTGCCTTTTGATATTCTT+TGG | - | chr5.3:18256068-18256087 | MS.gene78951:intron | 30.0% |
| !! | TCCTGATATTGATTCAAAGT+TGG | - | chr5.3:18255166-18255185 | MS.gene78951:intron | 30.0% |
| !!! | ATAGCTACTTTTTGTTGTTC+TGG | - | chr5.3:18256011-18256030 | MS.gene78951:intron | 30.0% |
| !!! | TGATTCTTGTTTGTTTTTGG+CGG | + | chr5.3:18254997-18255016 | None:intergenic | 30.0% |
| !!! | TTTGATTTTGACTGAAACAG+AGG | + | chr5.3:18257624-18257643 | None:intergenic | 30.0% |
| !!! | TTTTAGTTCTGATTTAGCCA+TGG | - | chr5.3:18257022-18257041 | MS.gene78951:intron | 30.0% |
| AATACGTATCTGGATTGTTG+TGG | - | chr5.3:18257558-18257577 | MS.gene78951:CDS | 35.0% | |
| AATCAATCCTCACAAACAAC+CGG | - | chr5.3:18256490-18256509 | MS.gene78951:intron | 35.0% | |
| AGCTTGTAATGATTGTACTG+TGG | - | chr5.3:18255556-18255575 | MS.gene78951:intron | 35.0% | |
| CAAAGGTCACAAAATGTGTT+AGG | + | chr5.3:18256915-18256934 | None:intergenic | 35.0% | |
| CAGTATATAACACAAACACC+AGG | + | chr5.3:18256962-18256981 | None:intergenic | 35.0% | |
| CAGTGGTGTGATCAAAATAT+AGG | + | chr5.3:18256825-18256844 | None:intergenic | 35.0% | |
| CCAATTGTTGAATCCAAACT+AGG | + | chr5.3:18255206-18255225 | None:intergenic | 35.0% | |
| CCTAGTTTGGATTCAACAAT+TGG | - | chr5.3:18255203-18255222 | MS.gene78951:intron | 35.0% | |
| CTTCTTAGGTTTAGGTCATT+TGG | - | chr5.3:18257143-18257162 | MS.gene78951:CDS | 35.0% | |
| GAAACAGAGGTTAAAGAGTT+CGG | + | chr5.3:18257611-18257630 | None:intergenic | 35.0% | |
| GAAACTCAAAATGCGCATAA+TGG | - | chr5.3:18255230-18255249 | MS.gene78951:intron | 35.0% | |
| GGAAAGAATATGACATGGAA+GGG | + | chr5.3:18256793-18256812 | None:intergenic | 35.0% | |
| GGAGATGTTAACGTAAATGA+AGG | - | chr5.3:18255683-18255702 | MS.gene78951:intron | 35.0% | |
| GTGAGCAATTCTGTTATAAG+AGG | + | chr5.3:18256763-18256782 | None:intergenic | 35.0% | |
| TAATCTTGACCACCAGAATA+CGG | + | chr5.3:18255407-18255426 | None:intergenic | 35.0% | |
| TATCTTGCGGAACAATCAAT+TGG | - | chr5.3:18257910-18257929 | MS.gene78951:CDS | 35.0% | |
| TGACAGTGTAATATATCAGC+TGG | + | chr5.3:18257686-18257705 | None:intergenic | 35.0% | |
| TGATGATAACAGGTATCTTG+CGG | - | chr5.3:18257897-18257916 | MS.gene78951:CDS | 35.0% | |
| ! | ACAGCACATTGACTAAAACA+CGG | + | chr5.3:18255482-18255501 | None:intergenic | 35.0% |
| ! | CATGTTATTGGTTGTACTGA+TGG | - | chr5.3:18257074-18257093 | MS.gene78951:intron | 35.0% |
| ! | GGAAAGTTTATTCTAGAAGG+GGG | + | chr5.3:18256547-18256566 | None:intergenic | 35.0% |
| !! | AATAAAGTGTTGATTCCTGG+TGG | - | chr5.3:18255587-18255606 | MS.gene78951:intron | 35.0% |
| !! | GATTGTTGTGGCTTTTAAGT+AGG | - | chr5.3:18257570-18257589 | MS.gene78951:CDS | 35.0% |
| !! | GGTAATAAAGTGTTGATTCC+TGG | - | chr5.3:18255584-18255603 | MS.gene78951:intron | 35.0% |
| !! | TAAGCCGTTTTGTTGTATCA+AGG | - | chr5.3:18255872-18255891 | MS.gene78951:intron | 35.0% |
| AAGAGGAAGAACGATAGAGT+GGG | + | chr5.3:18256746-18256765 | None:intergenic | 40.0% | |
| ACACCAGGACACAATTTCAA+CGG | + | chr5.3:18256947-18256966 | None:intergenic | 40.0% | |
| ACTGTGGCATGTTTATAGAG+AGG | - | chr5.3:18256333-18256352 | MS.gene78951:intron | 40.0% | |
| AGAGTTTCATCTCTTCTCTG+AGG | + | chr5.3:18256674-18256693 | None:intergenic | 40.0% | |
| AGATGGTAAGATTCGTGAGA+TGG | - | chr5.3:18255610-18255629 | MS.gene78951:intron | 40.0% | |
| AGCATTTGCTCAGAGATTAC+AGG | + | chr5.3:18256651-18256670 | None:intergenic | 40.0% | |
| AGGACCTCAAATGAGAATGT+AGG | + | chr5.3:18256895-18256914 | None:intergenic | 40.0% | |
| AGTTAGTAACCGCTTTGGTT+GGG | + | chr5.3:18256702-18256721 | None:intergenic | 40.0% | |
| ATATGACATGGAAGGGATTG+AGG | + | chr5.3:18256786-18256805 | None:intergenic | 40.0% | |
| ATCAGTTGCACAAGTCCATT+AGG | + | chr5.3:18256852-18256871 | None:intergenic | 40.0% | |
| CAAAAACTTACTTCCCGGTA+TGG | + | chr5.3:18257414-18257433 | None:intergenic | 40.0% | |
| CAACACGAACACACAACATT+TGG | + | chr5.3:18255458-18255477 | None:intergenic | 40.0% | |
| CACATTTATGAGCATGAGAG+TGG | + | chr5.3:18255827-18255846 | None:intergenic | 40.0% | |
| CACTCTCATGCTCATAAATG+TGG | - | chr5.3:18255825-18255844 | MS.gene78951:intron | 40.0% | |
| CATTTGCTCAGAGATTACAG+GGG | + | chr5.3:18256649-18256668 | None:intergenic | 40.0% | |
| CTAGCATGTTGTTATGTAGC+AGG | - | chr5.3:18257495-18257514 | MS.gene78951:CDS | 40.0% | |
| CTGTGGCATGTTTATAGAGA+GGG | - | chr5.3:18256334-18256353 | MS.gene78951:intron | 40.0% | |
| GAGAGGGAAAGAATATGACA+TGG | + | chr5.3:18256798-18256817 | None:intergenic | 40.0% | |
| GCATTTGCTCAGAGATTACA+GGG | + | chr5.3:18256650-18256669 | None:intergenic | 40.0% | |
| GGGAAAGAATATGACATGGA+AGG | + | chr5.3:18256794-18256813 | None:intergenic | 40.0% | |
| TAAAGCCACTGAAGCACAAA+TGG | + | chr5.3:18257200-18257219 | None:intergenic | 40.0% | |
| TAAGAGGAAGAACGATAGAG+TGG | + | chr5.3:18256747-18256766 | None:intergenic | 40.0% | |
| TATGACATGGAAGGGATTGA+GGG | + | chr5.3:18256785-18256804 | None:intergenic | 40.0% | |
| TGCTGAGTACTATGAACTTG+AGG | - | chr5.3:18255295-18255314 | MS.gene78951:intron | 40.0% | |
| TGGAATCATGACTAGTACCA+TGG | + | chr5.3:18257042-18257061 | None:intergenic | 40.0% | |
| TTGGTTAGTGAAACTGTAGC+AGG | - | chr5.3:18257162-18257181 | MS.gene78951:CDS | 40.0% | |
| ! | AATTTAGGGTGAGGTAAAGC+AGG | + | chr5.3:18256447-18256466 | None:intergenic | 40.0% |
| ! | ACCTGAACAAATTGGTGACT+CGG | - | chr5.3:18257342-18257361 | MS.gene78951:CDS | 40.0% |
| ! | GATCTATTCTGTGCACTGAT+AGG | - | chr5.3:18256125-18256144 | MS.gene78951:intron | 40.0% |
| ! | TATTCTAGAAGGGGGAAAAG+CGG | + | chr5.3:18256539-18256558 | None:intergenic | 40.0% |
| ! | TTACTGCTGTTCTGAATGCT+TGG | - | chr5.3:18257374-18257393 | MS.gene78951:CDS | 40.0% |
| ! | TTCTTTGGGTTTGAATGCCA+AGG | - | chr5.3:18256083-18256102 | MS.gene78951:intron | 40.0% |
| !!! | GTGTTTTAGTCAATGTGCTG+TGG | - | chr5.3:18255481-18255500 | MS.gene78951:intron | 40.0% |
| !!! | TTCTTGTTTGTTTTTGGCGG+TGG | + | chr5.3:18254994-18255013 | None:intergenic | 40.0% |
| AAATCCACGTTAAACGCTCC+TGG | - | chr5.3:18256039-18256058 | MS.gene78951:intron | 45.0% | |
| AAGATTCGTGAGATGGCGAT+GGG | - | chr5.3:18255617-18255636 | MS.gene78951:intron | 45.0% | |
| AATTCTGGTGTGCCGTATTC+TGG | - | chr5.3:18255392-18255411 | MS.gene78951:CDS | 45.0% | |
| ACACACCATTTGTGCTTCAG+TGG | - | chr5.3:18257192-18257211 | MS.gene78951:CDS | 45.0% | |
| ACTGAAGCACAAATGGTGTG+TGG | + | chr5.3:18257193-18257212 | None:intergenic | 45.0% | |
| CAAGCTTTCGACTCAGTTAG+AGG | + | chr5.3:18255972-18255991 | None:intergenic | 45.0% | |
| CAAGTCCATTAGGTAGACAG+TGG | + | chr5.3:18256842-18256861 | None:intergenic | 45.0% | |
| CAGGAGTAATTGTGTAGCAC+CGG | + | chr5.3:18256512-18256531 | None:intergenic | 45.0% | |
| CAGTTAGTAACCGCTTTGGT+TGG | + | chr5.3:18256703-18256722 | None:intergenic | 45.0% | |
| CATCCGTTGAAATTGTGTCC+TGG | - | chr5.3:18256941-18256960 | MS.gene78951:intron | 45.0% | |
| CGACGCAATCTCTTCTTACA+AGG | - | chr5.3:18254886-18254905 | MS.gene78951:intron | 45.0% | |
| CTCAGTCAATGGTCCTAATG+AGG | + | chr5.3:18256606-18256625 | None:intergenic | 45.0% | |
| CTGAATGCTTGGTATTCAGC+TGG | - | chr5.3:18257385-18257404 | MS.gene78951:CDS | 45.0% | |
| CTTGCAGTTAGTAACCGCTT+TGG | + | chr5.3:18256707-18256726 | None:intergenic | 45.0% | |
| GAAGAACGATAGAGTGGGAA+GGG | + | chr5.3:18256741-18256760 | None:intergenic | 45.0% | |
| GAAGATCGTGACTCAGTCAA+TGG | + | chr5.3:18256617-18256636 | None:intergenic | 45.0% | |
| GAATACGGCACACCAGAATT+TGG | + | chr5.3:18255392-18255411 | None:intergenic | 45.0% | |
| GATGTCTGCACAGCAAGTTT+CGG | - | chr5.3:18255430-18255449 | MS.gene78951:CDS | 45.0% | |
| GGGGAAAGATGGAGATCTAT+GGG | - | chr5.3:18254835-18254854 | MS.gene78951:CDS | 45.0% | |
| TAAGATTCGTGAGATGGCGA+TGG | - | chr5.3:18255616-18255635 | MS.gene78951:intron | 45.0% | |
| TCACACCACTGTCTACCTAA+TGG | - | chr5.3:18256834-18256853 | MS.gene78951:intron | 45.0% | |
| TGCTGTGGATTCATGTGCAT+CGG | - | chr5.3:18255496-18255515 | MS.gene78951:intron | 45.0% | |
| TGGGCCTACATTCTCATTTG+AGG | - | chr5.3:18256888-18256907 | MS.gene78951:intron | 45.0% | |
| TGGGGAAAGATGGAGATCTA+TGG | - | chr5.3:18254834-18254853 | MS.gene78951:CDS | 45.0% | |
| TTCAACGGATGCAAGCACAA+AGG | + | chr5.3:18256932-18256951 | None:intergenic | 45.0% | |
| TTCCAGGTTGTTCTGTTGGT+GGG | - | chr5.3:18255519-18255538 | MS.gene78951:intron | 45.0% | |
| ! | ACAAATTGGTGACTCGGCAA+CGG | - | chr5.3:18257348-18257367 | MS.gene78951:CDS | 45.0% |
| ! | CAAAAGGCACAAATGAAGCC+AGG | + | chr5.3:18256060-18256079 | None:intergenic | 45.0% |
| ! | TATTCAGCTGGCTTCCATAC+CGG | - | chr5.3:18257397-18257416 | MS.gene78951:CDS | 45.0% |
| !! | CCTAGCTCTGGTAAGAATCA+GGG | + | chr5.3:18256367-18256386 | None:intergenic | 45.0% |
| !!! | AATTTATTTTGATTTATAAT+AGG | - | chr5.3:18255120-18255139 | MS.gene78951:intron | 5.0% |
| !!! | ATTTATTTTGATTTATAATA+GGG | - | chr5.3:18255121-18255140 | MS.gene78951:intron | 5.0% |
| ACTCAGCTAGACCCAAAGTG+TGG | + | chr5.3:18256568-18256587 | None:intergenic | 50.0% | |
| AGATTCGTGAGATGGCGATG+GGG | - | chr5.3:18255618-18255637 | MS.gene78951:intron | 50.0% | |
| AGGGAGCAGTAGCTTCCTAA+AGG | + | chr5.3:18256392-18256411 | None:intergenic | 50.0% | |
| CCCTGATTCTTACCAGAGCT+AGG | - | chr5.3:18256364-18256383 | MS.gene78951:intron | 50.0% | |
| CGAATCTTACCATCTCCACC+AGG | + | chr5.3:18255605-18255624 | None:intergenic | 50.0% | |
| GGAAGAACGATAGAGTGGGA+AGG | + | chr5.3:18256742-18256761 | None:intergenic | 50.0% | |
| GTAGCAACTGGGCCAAATTC+TGG | - | chr5.3:18255377-18255396 | MS.gene78951:CDS | 50.0% | |
| GTTCCAGGTTGTTCTGTTGG+TGG | - | chr5.3:18255518-18255537 | MS.gene78951:intron | 50.0% | |
| TACCAGAGCTAGGCTCCTTT+AGG | - | chr5.3:18256374-18256393 | MS.gene78951:intron | 50.0% | |
| TCGGTTCCAGGTTGTTCTGT+TGG | - | chr5.3:18255515-18255534 | MS.gene78951:intron | 50.0% | |
| TTCCTAAAGGAGCCTAGCTC+TGG | + | chr5.3:18256379-18256398 | None:intergenic | 50.0% | |
| ! | AGGTTGTTCTGTTGGTGGGT+CGG | - | chr5.3:18255523-18255542 | MS.gene78951:intron | 50.0% |
| ! | ATTCAGCTGGCTTCCATACC+GGG | - | chr5.3:18257398-18257417 | MS.gene78951:CDS | 50.0% |
| ! | GCCGAGTCACCAATTTGTTC+AGG | + | chr5.3:18257346-18257365 | None:intergenic | 50.0% |
| !! | GATTCATGTGCATCGGTTCC+AGG | - | chr5.3:18255503-18255522 | MS.gene78951:intron | 50.0% |
| !! | GCCTAGCTCTGGTAAGAATC+AGG | + | chr5.3:18256368-18256387 | None:intergenic | 50.0% |
| !! | GTGTTGATTCCTGGTGGAGA+TGG | - | chr5.3:18255593-18255612 | MS.gene78951:intron | 50.0% |
| !! | TGTAGCACCGGTTGTTTGTG+AGG | + | chr5.3:18256500-18256519 | None:intergenic | 50.0% |
| AAGGGGGAAAAGCGGTACAC+AGG | + | chr5.3:18256531-18256550 | None:intergenic | 55.0% | |
| CTCTGTCTGCCCAACCAAAG+CGG | - | chr5.3:18256690-18256709 | MS.gene78951:intron | 55.0% | |
| GACCCACCAACAGAACAACC+TGG | + | chr5.3:18255524-18255543 | None:intergenic | 55.0% | |
| GATTCGTGAGATGGCGATGG+GGG | - | chr5.3:18255619-18255638 | MS.gene78951:intron | 55.0% | |
| TCTGGTGTGCCGTATTCTGG+TGG | - | chr5.3:18255395-18255414 | MS.gene78951:CDS | 55.0% | |
| ! | CTGTGCACTGATAGGTCTGC+TGG | - | chr5.3:18256133-18256152 | MS.gene78951:intron | 55.0% |
| ! | GGTTGTTCTGTTGGTGGGTC+GGG | - | chr5.3:18255524-18255543 | MS.gene78951:intron | 55.0% |
| !! | GAAGCCAGGAGCGTTTAACG+TGG | + | chr5.3:18256046-18256065 | None:intergenic | 55.0% |
| ! | TCTGTTGGTGGGTCGGGTGT+TGG | - | chr5.3:18255530-18255549 | MS.gene78951:intron | 60.0% |
| TGAGATGGCGATGGGGGCAG+CGG | - | chr5.3:18255625-18255644 | MS.gene78951:intron | 65.0% | |
| GGCGATGGGGGCAGCGGAGA+GGG | - | chr5.3:18255631-18255650 | MS.gene78951:intron | 75.0% | |
| TGGCGATGGGGGCAGCGGAG+AGG | - | chr5.3:18255630-18255649 | MS.gene78951:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18254833 | 18257951 | 18254833 | ID=MS.gene78951 |
| chr5.3 | mRNA | 18254833 | 18257951 | 18254833 | ID=MS.gene78951.t1;Parent=MS.gene78951 |
| chr5.3 | exon | 18257877 | 18257951 | 18257877 | ID=MS.gene78951.t1.exon1;Parent=MS.gene78951.t1 |
| chr5.3 | CDS | 18257877 | 18257951 | 18257877 | ID=cds.MS.gene78951.t1;Parent=MS.gene78951.t1 |
| chr5.3 | exon | 18257724 | 18257803 | 18257724 | ID=MS.gene78951.t1.exon2;Parent=MS.gene78951.t1 |
| chr5.3 | CDS | 18257724 | 18257803 | 18257724 | ID=cds.MS.gene78951.t1;Parent=MS.gene78951.t1 |
| chr5.3 | exon | 18257080 | 18257642 | 18257080 | ID=MS.gene78951.t1.exon3;Parent=MS.gene78951.t1 |
| chr5.3 | CDS | 18257080 | 18257642 | 18257080 | ID=cds.MS.gene78951.t1;Parent=MS.gene78951.t1 |
| chr5.3 | exon | 18255362 | 18255464 | 18255362 | ID=MS.gene78951.t1.exon4;Parent=MS.gene78951.t1 |
| chr5.3 | CDS | 18255362 | 18255464 | 18255362 | ID=cds.MS.gene78951.t1;Parent=MS.gene78951.t1 |
| chr5.3 | exon | 18254833 | 18254875 | 18254833 | ID=MS.gene78951.t1.exon5;Parent=MS.gene78951.t1 |
| chr5.3 | CDS | 18254833 | 18254875 | 18254833 | ID=cds.MS.gene78951.t1;Parent=MS.gene78951.t1 |
| Gene Sequence |
| Protein sequence |
