Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90287.t1 | XP_013448864.1 | 96.7 | 611 | 20 | 0 | 1 | 611 | 1 | 611 | 0.00E+00 | 1166.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90287.t1 | Q6R0E3 | 37.7 | 644 | 336 | 16 | 1 | 607 | 1 | 616 | 1.3e-79 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90287.t1 | A0A072U0H7 | 96.7 | 611 | 20 | 0 | 1 | 611 | 1 | 611 | 0.0e+00 | 1166.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene90287 | 0.863617 | 2.19E-64 | -1.69E-46 |
| MS.gene049488 | MS.gene90287 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene90287 | 0.829519 | 4.92E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene90287 | 0.842202 | 2.99E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene90287 | 0.826037 | 3.38E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene90287 | 0.825298 | 5.06E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene90287 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene90287 | 0.813057 | 3.10E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene90287 | 0.813133 | 2.99E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene90287 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene90287 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene90287 | 0.80874 | 2.67E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene90287 | 0.861572 | 9.34E-64 | -1.69E-46 |
| MS.gene051666 | MS.gene90287 | 0.813098 | 3.04E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene90287 | 0.811304 | 7.49E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene90287 | -0.801124 | 1.04E-48 | -1.69E-46 |
| MS.gene052134 | MS.gene90287 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene90287 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene052136 | MS.gene90287 | 0.800189 | 1.62E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene90287 | 0.845951 | 2.95E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene90287 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene90287 | 0.806286 | 8.86E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene90287 | 0.838286 | 3.15E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene90287 | 0.827601 | 1.43E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene90287 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene90287 | 0.850293 | 1.87E-60 | -1.69E-46 |
| MS.gene052503 | MS.gene90287 | 0.807836 | 4.16E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene90287 | 0.854861 | 9.29E-62 | -1.69E-46 |
| MS.gene052615 | MS.gene90287 | 0.841221 | 5.42E-58 | -1.69E-46 |
| MS.gene052982 | MS.gene90287 | 0.846115 | 2.66E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene90287 | 0.819008 | 1.46E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene90287 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene90287 | -0.806002 | 1.02E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene90287 | 0.841887 | 3.62E-58 | -1.69E-46 |
| MS.gene053873 | MS.gene90287 | 0.822382 | 2.44E-53 | -1.69E-46 |
| MS.gene053915 | MS.gene90287 | 0.826591 | 2.49E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene90287 | 0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene054102 | MS.gene90287 | 0.806298 | 8.80E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene90287 | -0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene90287 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene90287 | 0.84345 | 1.39E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene90287 | 0.841318 | 5.11E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene90287 | 0.805529 | 1.28E-49 | -1.69E-46 |
| MS.gene055289 | MS.gene90287 | 0.876931 | 9.43E-69 | -1.69E-46 |
| MS.gene055370 | MS.gene90287 | 0.82269 | 2.07E-53 | -1.69E-46 |
| MS.gene055499 | MS.gene90287 | 0.81424 | 1.70E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene90287 | 0.81233 | 4.48E-51 | -1.69E-46 |
| MS.gene056497 | MS.gene90287 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene90287 | 0.809615 | 1.73E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene90287 | 0.806311 | 8.75E-50 | -1.69E-46 |
| MS.gene056782 | MS.gene90287 | 0.826201 | 3.09E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene90287 | 0.833713 | 4.55E-56 | -1.69E-46 |
| MS.gene057048 | MS.gene90287 | 0.867794 | 1.05E-65 | -1.69E-46 |
| MS.gene057076 | MS.gene90287 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene90287 | 0.82594 | 3.56E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene90287 | 0.811058 | 8.47E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene90287 | 0.814305 | 1.65E-51 | -1.69E-46 |
| MS.gene057310 | MS.gene90287 | 0.809469 | 1.86E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene90287 | 0.846184 | 2.55E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene90287 | 0.854319 | 1.33E-61 | -1.69E-46 |
| MS.gene057845 | MS.gene90287 | 0.812648 | 3.81E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene90287 | 0.813236 | 2.83E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene90287 | 0.805577 | 1.25E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene90287 | 0.814455 | 1.53E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene90287 | 0.835024 | 2.13E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene90287 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene90287 | 0.806412 | 8.33E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene90287 | 0.801966 | 7.01E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene90287 | 0.824729 | 6.89E-54 | -1.69E-46 |
| MS.gene059011 | MS.gene90287 | 0.8043 | 2.31E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene90287 | 0.800408 | 1.46E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene90287 | 0.802224 | 6.21E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene90287 | 0.829006 | 6.55E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene90287 | 0.831588 | 1.53E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene90287 | 0.824018 | 1.01E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene90287 | 0.834213 | 3.41E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene90287 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene90287 | 0.809805 | 1.58E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene90287 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene90287 | 0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene90287 | 0.825683 | 4.10E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene90287 | 0.820505 | 6.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90287.t1 | MTR_7g061840 | 96.727 | 611 | 20 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1236 |
| MS.gene90287.t1 | MTR_3g067935 | 38.906 | 658 | 318 | 21 | 1 | 609 | 1 | 623 | 2.80e-108 | 340 |
| MS.gene90287.t1 | MTR_2g097290 | 44.568 | 451 | 191 | 12 | 196 | 600 | 270 | 707 | 7.31e-93 | 301 |
| MS.gene90287.t1 | MTR_2g097290 | 42.308 | 104 | 50 | 5 | 1 | 99 | 1 | 99 | 1.04e-12 | 71.6 |
| MS.gene90287.t1 | MTR_5g080010 | 37.139 | 657 | 312 | 18 | 1 | 609 | 1 | 604 | 5.03e-92 | 296 |
| MS.gene90287.t1 | MTR_2g097290 | 37.245 | 392 | 187 | 12 | 196 | 541 | 270 | 648 | 8.31e-48 | 179 |
| MS.gene90287.t1 | MTR_2g097290 | 42.308 | 104 | 50 | 5 | 1 | 99 | 1 | 99 | 1.28e-12 | 71.2 |
| MS.gene90287.t1 | MTR_5g080010 | 32.054 | 443 | 222 | 13 | 1 | 409 | 1 | 398 | 6.70e-32 | 129 |
| MS.gene90287.t1 | MTR_2g097290 | 42.308 | 104 | 50 | 5 | 1 | 99 | 1 | 99 | 1.31e-12 | 70.9 |
| MS.gene90287.t1 | MTR_2g097290 | 34.694 | 196 | 84 | 8 | 196 | 356 | 270 | 456 | 2.74e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90287.t1 | AT1G07540 | 52.557 | 352 | 138 | 8 | 259 | 608 | 293 | 617 | 1.63e-99 | 316 |
| MS.gene90287.t1 | AT3G12560 | 56.597 | 288 | 116 | 6 | 322 | 607 | 317 | 597 | 1.53e-95 | 306 |
| MS.gene90287.t1 | AT3G12560 | 56.597 | 288 | 116 | 6 | 322 | 607 | 317 | 597 | 1.53e-95 | 306 |
| MS.gene90287.t1 | AT5G13820 | 36.687 | 646 | 351 | 17 | 1 | 609 | 1 | 625 | 5.82e-94 | 302 |
| MS.gene90287.t1 | AT5G13820 | 36.687 | 646 | 351 | 17 | 1 | 609 | 1 | 625 | 5.82e-94 | 302 |
| MS.gene90287.t1 | AT3G46590 | 46.265 | 415 | 159 | 13 | 210 | 610 | 173 | 537 | 1.23e-93 | 298 |
| MS.gene90287.t1 | AT3G46590 | 45.606 | 421 | 159 | 13 | 210 | 610 | 132 | 502 | 5.17e-93 | 296 |
| MS.gene90287.t1 | AT3G46590 | 45.606 | 421 | 159 | 13 | 210 | 610 | 172 | 542 | 1.05e-92 | 296 |
| MS.gene90287.t1 | AT3G46590 | 45.606 | 421 | 159 | 13 | 210 | 610 | 173 | 543 | 1.32e-92 | 296 |
| MS.gene90287.t1 | AT5G59430 | 44.096 | 415 | 175 | 12 | 206 | 606 | 184 | 555 | 3.30e-82 | 269 |
| MS.gene90287.t1 | AT5G59430 | 43.765 | 409 | 173 | 12 | 206 | 600 | 184 | 549 | 1.37e-78 | 260 |
| MS.gene90287.t1 | AT5G59430 | 43.765 | 409 | 173 | 12 | 206 | 600 | 184 | 549 | 1.37e-78 | 260 |
| MS.gene90287.t1 | AT5G59430 | 43.765 | 409 | 173 | 12 | 206 | 600 | 184 | 549 | 1.37e-78 | 260 |
| MS.gene90287.t1 | AT5G59430 | 44.010 | 409 | 172 | 12 | 206 | 600 | 183 | 548 | 1.47e-78 | 260 |
| MS.gene90287.t1 | AT3G53790 | 75.000 | 104 | 25 | 1 | 498 | 600 | 293 | 396 | 3.64e-45 | 165 |
| MS.gene90287.t1 | AT3G53790 | 40.506 | 158 | 46 | 3 | 257 | 410 | 144 | 257 | 3.36e-24 | 105 |
| MS.gene90287.t1 | AT3G46590 | 31.078 | 473 | 214 | 15 | 1 | 446 | 1 | 388 | 6.38e-41 | 153 |
Find 131 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACAAGCATTTGATATTT+TGG | 0.097321 | 7.4:-42322439 | MS.gene90287:CDS |
| TCCTTAACCTTTATTGTATC+TGG | 0.186934 | 7.4:+42321568 | None:intergenic |
| TCTTCTTGTACAAGGGTTAA+TGG | 0.231394 | 7.4:-42321081 | MS.gene90287:CDS |
| GAACCAATAGTTGCAGTTTC+AGG | 0.263237 | 7.4:+42320578 | None:intergenic |
| GTTCACGACCAAAACTTTCT+AGG | 0.280251 | 7.4:-42319829 | MS.gene90287:intron |
| GAATCAAGTAGGATCGTTTA+AGG | 0.284561 | 7.4:-42322301 | MS.gene90287:CDS |
| AGCTAATGCATCCATGTTAA+TGG | 0.287279 | 7.4:+42319365 | None:intergenic |
| TTCGCAGAAGCAGCATTATC+AGG | 0.312880 | 7.4:+42322372 | None:intergenic |
| GTTCCATACCGGCGTAAATC+AGG | 0.326139 | 7.4:-42319339 | MS.gene90287:CDS |
| TCTACTTCTAGAACCGAAAA+TGG | 0.337783 | 7.4:+42319282 | None:intergenic |
| AATGGTTACCTAGAAAGTTT+TGG | 0.349626 | 7.4:+42319821 | None:intergenic |
| ACCTTTATTGTATCTGGTGA+TGG | 0.352975 | 7.4:+42321574 | None:intergenic |
| CCGAAAATGGCCTCCTGATT+CGG | 0.370780 | 7.4:+42319295 | None:intergenic |
| TCATGTTTCCCTTGCAAACT+AGG | 0.375599 | 7.4:+42322228 | None:intergenic |
| GATGACAAACGTCATAGGTT+AGG | 0.387281 | 7.4:-42319923 | MS.gene90287:CDS |
| TACCGAATGGTTCCGGTACT+AGG | 0.387844 | 7.4:-42321672 | MS.gene90287:CDS |
| GCATTGTTGTTGAGACCAAT+AGG | 0.397180 | 7.4:+42318399 | None:intergenic |
| GATTCTTTACCGAATGGTTC+CGG | 0.401456 | 7.4:-42321679 | MS.gene90287:CDS |
| TCTTATCTGCTCATGCCTAT+TGG | 0.403689 | 7.4:-42318414 | MS.gene90287:CDS |
| ACTTTGGACAGCGCCGAATC+AGG | 0.407176 | 7.4:-42319308 | MS.gene90287:CDS |
| TCGAGAAGCTCTTGAGGAAC+AGG | 0.408362 | 7.4:+42318442 | None:intergenic |
| AGAAGTAGAAGCGTTGGTTC+AGG | 0.408612 | 7.4:-42319268 | MS.gene90287:CDS |
| ACCAGATACAATAAAGGTTA+AGG | 0.409317 | 7.4:-42321569 | MS.gene90287:CDS |
| ATACCTGAAACTGCAACTAT+TGG | 0.409414 | 7.4:-42320581 | MS.gene90287:CDS |
| CACGTAGGCATCCTTCTTCA+AGG | 0.423941 | 7.4:-42319998 | MS.gene90287:CDS |
| ATTGTATCTGGTGATGGGTC+GGG | 0.428160 | 7.4:+42321580 | None:intergenic |
| TTTCCTACCGTTACAACCCT+TGG | 0.440877 | 7.4:+42320886 | None:intergenic |
| ATTCTTTGATTTCAGTTCAG+TGG | 0.443794 | 7.4:+42321609 | None:intergenic |
| CAGTTGATTCTTCTTGTACA+AGG | 0.447047 | 7.4:-42321089 | MS.gene90287:CDS |
| AACTCTGAGTCTTCTGCAAA+AGG | 0.448193 | 7.4:+42322400 | None:intergenic |
| TCATGTGGAGAAATCTTCAT+TGG | 0.454197 | 7.4:-42321725 | MS.gene90287:CDS |
| AAGGAGGAGCAATTTGAGAA+TGG | 0.454790 | 7.4:-42322282 | MS.gene90287:CDS |
| TTTCATGACAATCATCTTGA+AGG | 0.455581 | 7.4:-42321889 | MS.gene90287:CDS |
| CCCATCACCAGATACAATAA+AGG | 0.457331 | 7.4:-42321575 | MS.gene90287:CDS |
| TCAAAATTCTGCAGGATAAG+TGG | 0.457423 | 7.4:-42318516 | MS.gene90287:intron |
| GTTAGGGGAGGGGTACAATC+AGG | 0.462114 | 7.4:-42322482 | MS.gene90287:intron |
| CTAGAGCTTCAAGATCTCCT+AGG | 0.464029 | 7.4:-42322751 | MS.gene90287:CDS |
| ACTTGCAGTGAAGTTGTCTC+TGG | 0.465134 | 7.4:-42322258 | MS.gene90287:CDS |
| TATGATTATGCAGAAGAGGT+TGG | 0.467837 | 7.4:-42322801 | MS.gene90287:CDS |
| AATCAATACTCCTGCGGAAG+TGG | 0.468412 | 7.4:+42321698 | None:intergenic |
| TGCTTGTATCTGATTGCTGT+CGG | 0.468760 | 7.4:+42322452 | None:intergenic |
| CATTGGAGGGCCACTTCCGC+AGG | 0.469603 | 7.4:-42321708 | MS.gene90287:CDS |
| TTGGTCGTGAACCAGTGGTT+AGG | 0.470589 | 7.4:+42319840 | None:intergenic |
| GACCCTTGTTTCCTAACCAC+TGG | 0.473534 | 7.4:-42319851 | MS.gene90287:CDS |
| TTCCCTGATTTACGCCGGTA+TGG | 0.473925 | 7.4:+42319336 | None:intergenic |
| TGTATCTCGGGAACGTTCTA+CGG | 0.481631 | 7.4:-42319499 | MS.gene90287:CDS |
| AAGGAACATATAATGTATCT+CGG | 0.482346 | 7.4:-42319512 | MS.gene90287:CDS |
| CTCAAGATGACAAACGTCAT+AGG | 0.485216 | 7.4:-42319928 | MS.gene90287:CDS |
| CCTTTATTGTATCTGGTGAT+GGG | 0.485584 | 7.4:+42321575 | None:intergenic |
| TCGAACTTATGTCGATTTGA+AGG | 0.486100 | 7.4:-42319108 | MS.gene90287:intron |
| GCTTGTATCTGATTGCTGTC+GGG | 0.486132 | 7.4:+42322453 | None:intergenic |
| TATTGTATCTGGTGATGGGT+CGG | 0.486649 | 7.4:+42321579 | None:intergenic |
| ATTAAGTAATTTCCTAGTAC+CGG | 0.489621 | 7.4:+42321660 | None:intergenic |
| TAATCTTCTTCCCTTGAAGA+AGG | 0.490156 | 7.4:+42319987 | None:intergenic |
| ATGACAAACGTCATAGGTTA+GGG | 0.494107 | 7.4:-42319922 | MS.gene90287:CDS |
| AAATCAGGGAATTCCTACTT+TGG | 0.494182 | 7.4:-42319324 | MS.gene90287:CDS |
| CATGTTTCCCTTGCAAACTA+GGG | 0.496574 | 7.4:+42322229 | None:intergenic |
| CATGTCAAAGTGTCGAGCTC+TGG | 0.501891 | 7.4:-42319400 | MS.gene90287:CDS |
| CTAGGAGATCTTGAAGCTCT+AGG | 0.502668 | 7.4:+42322752 | None:intergenic |
| GATGCAAGTCCTTTCGTGAA+TGG | 0.506837 | 7.4:-42321547 | MS.gene90287:intron |
| CCGTTACAACCCTTGGACTC+AGG | 0.507479 | 7.4:+42320893 | None:intergenic |
| CACAGTTCCTGCCATTAACA+TGG | 0.513821 | 7.4:-42319376 | MS.gene90287:CDS |
| AAGATATGATTATGCAGAAG+AGG | 0.522332 | 7.4:-42322805 | None:intergenic |
| TTCCTAGTACCGGAACCATT+CGG | 0.524514 | 7.4:+42321670 | None:intergenic |
| CATCTTGAGATATCCCGGTC+TGG | 0.533217 | 7.4:+42319942 | None:intergenic |
| CATTAGCTGTGGTTCCATAC+CGG | 0.536414 | 7.4:-42319350 | MS.gene90287:CDS |
| GTCTCCAAGTATAGTTGTCA+CGG | 0.537258 | 7.4:+42320027 | None:intergenic |
| AGTATTGATTCTTTACCGAA+TGG | 0.542611 | 7.4:-42321685 | MS.gene90287:CDS |
| GGATGTGTCCCTAGTTTGCA+AGG | 0.546500 | 7.4:-42322237 | MS.gene90287:CDS |
| CATAAGTTCGATGCTTTGCA+TGG | 0.547294 | 7.4:+42319120 | None:intergenic |
| CAATATACATGTTAGGGGAG+GGG | 0.548387 | 7.4:-42322492 | MS.gene90287:intron |
| AGTTGATTCTTCTTGTACAA+GGG | 0.551085 | 7.4:-42321088 | MS.gene90287:CDS |
| TTATTTGCAGAGGACAGTAA+TGG | 0.553373 | 7.4:-42320053 | MS.gene90287:intron |
| AGGAACATATAATGTATCTC+GGG | 0.554305 | 7.4:-42319511 | MS.gene90287:CDS |
| AGTAAAACTTTGATCCAGAC+CGG | 0.558827 | 7.4:-42319956 | MS.gene90287:CDS |
| TTTGTCATCTTGAGATATCC+CGG | 0.559326 | 7.4:+42319937 | None:intergenic |
| AAAATTGAAAATTGTGCTGA+AGG | 0.559691 | 7.4:-42319474 | MS.gene90287:CDS |
| GAAGCCGTGACAACTATACT+TGG | 0.562287 | 7.4:-42320031 | MS.gene90287:CDS |
| AGAAGTTCTTCCTGAGTCCA+AGG | 0.567088 | 7.4:-42320903 | MS.gene90287:CDS |
| AATGCATCCATGTTAATGGC+AGG | 0.570258 | 7.4:+42319369 | None:intergenic |
| GATTCGGCGCTGTCCAAAGT+AGG | 0.570894 | 7.4:+42319311 | None:intergenic |
| TTCATGACAATCATCTTGAA+GGG | 0.572585 | 7.4:-42321888 | MS.gene90287:CDS |
| GTTCTATTAATCCATCAGAT+CGG | 0.572654 | 7.4:+42321785 | None:intergenic |
| GAACCAGTGGTTAGGAAACA+AGG | 0.575620 | 7.4:+42319848 | None:intergenic |
| TTCCATACCGGCGTAAATCA+GGG | 0.575681 | 7.4:-42319338 | MS.gene90287:CDS |
| TGTGGAGAAATCTTCATTGG+AGG | 0.579509 | 7.4:-42321722 | MS.gene90287:CDS |
| AATGGCACGAACCATGGTAC+AGG | 0.581155 | 7.4:-42321063 | MS.gene90287:CDS |
| CCTGAGTCCAAGGGTTGTAA+CGG | 0.581606 | 7.4:-42320893 | MS.gene90287:intron |
| GATGAAATTCGATTATGTCT+CGG | 0.581676 | 7.4:+42319887 | None:intergenic |
| TAGAGCTTCAAGATCTCCTA+GGG | 0.583424 | 7.4:-42322750 | MS.gene90287:intron |
| AGGGTTAATGGCACGAACCA+TGG | 0.584303 | 7.4:-42321069 | MS.gene90287:CDS |
| AAGGGAAACATGAAAATCAA+AGG | 0.584574 | 7.4:-42322218 | MS.gene90287:intron |
| GACAGTTGGTCTCACTGTCA+AGG | 0.585006 | 7.4:-42321114 | MS.gene90287:CDS |
| TGCAACTATTGGTTCGCTGA+AGG | 0.585230 | 7.4:-42320570 | MS.gene90287:intron |
| GCAGGATAAGTGGAAGACCT+TGG | 0.586572 | 7.4:-42318506 | MS.gene90287:intron |
| AGCTGAAGCTTCTCCTACAG+AGG | 0.590303 | 7.4:+42319434 | None:intergenic |
| GCATTGTTCCGCCTGTACCA+TGG | 0.590636 | 7.4:+42321052 | None:intergenic |
| GGTACAGGCGGAACAATGCA+TGG | 0.593594 | 7.4:-42321048 | MS.gene90287:intron |
| CTCAACATGGTCTCCTCTGT+AGG | 0.594624 | 7.4:-42319447 | MS.gene90287:CDS |
| ATCTCTCCTCAGCAAAGGAG+AGG | 0.595351 | 7.4:-42318469 | MS.gene90287:CDS |
| GTGGAGAAATCTTCATTGGA+GGG | 0.596357 | 7.4:-42321721 | MS.gene90287:CDS |
| ACTCTGTCGAGAAGCTCTTG+AGG | 0.596757 | 7.4:+42318436 | None:intergenic |
| TCATAGGTTAGGGTTCATGT+TGG | 0.599261 | 7.4:-42319912 | MS.gene90287:CDS |
| CAAGAATCTCTCCTCAGCAA+AGG | 0.600327 | 7.4:-42318474 | MS.gene90287:CDS |
| GGTTCTAGAAGTAGAAGCGT+TGG | 0.602643 | 7.4:-42319274 | MS.gene90287:CDS |
| AACAAACAAGAGAATCAAGT+AGG | 0.610792 | 7.4:-42322312 | MS.gene90287:CDS |
| ACGTAGGCATCCTTCTTCAA+GGG | 0.611020 | 7.4:-42319997 | MS.gene90287:CDS |
| GAAGTTCTTCCTGAGTCCAA+GGG | 0.612005 | 7.4:-42320902 | MS.gene90287:CDS |
| GGTTCTCCTCTCCTTTGCTG+AGG | 0.612253 | 7.4:+42318463 | None:intergenic |
| AAGGACAGAATGTCATTGAG+AGG | 0.614192 | 7.4:-42321864 | MS.gene90287:CDS |
| TAACATGGATGCATTAGCTG+TGG | 0.627343 | 7.4:-42319361 | MS.gene90287:CDS |
| AGCTAAATACCATTCACGAA+AGG | 0.627535 | 7.4:+42321538 | None:intergenic |
| AGGAATTCCCTGATTTACGC+CGG | 0.631176 | 7.4:+42319331 | None:intergenic |
| GACAATCATCTTGAAGGGCA+AGG | 0.632636 | 7.4:-42321883 | MS.gene90287:CDS |
| GGCACGAACCATGGTACAGG+CGG | 0.636398 | 7.4:-42321060 | MS.gene90287:CDS |
| AGAAGCAGCATTATCAGGAA+CGG | 0.641011 | 7.4:+42322377 | None:intergenic |
| TTGGACAGCGCCGAATCAGG+AGG | 0.641138 | 7.4:-42319305 | MS.gene90287:CDS |
| AGGACAGAATGTCATTGAGA+GGG | 0.643749 | 7.4:-42321863 | MS.gene90287:CDS |
| CATCGTCTACGTCTGACAGT+TGG | 0.645131 | 7.4:-42321128 | MS.gene90287:CDS |
| GATTCTTGCTGTGTGAACCA+AGG | 0.647449 | 7.4:+42318489 | None:intergenic |
| TTGCAGTGCAGAAAATCATG+TGG | 0.655690 | 7.4:-42321740 | MS.gene90287:CDS |
| TCAAGTAGGATCGTTTAAGG+AGG | 0.657594 | 7.4:-42322298 | MS.gene90287:CDS |
| GATGTGTCCCTAGTTTGCAA+GGG | 0.670828 | 7.4:-42322236 | MS.gene90287:CDS |
| ACATCTTTAATGTTACAACA+AGG | 0.673582 | 7.4:-42319531 | MS.gene90287:CDS |
| ACTGTCAGACGTAGACGATG+AGG | 0.673863 | 7.4:+42321131 | None:intergenic |
| AACCAGTGGTTAGGAAACAA+GGG | 0.674807 | 7.4:+42319849 | None:intergenic |
| TGCTGAAGGTGATCTCAACA+TGG | 0.680051 | 7.4:-42319460 | MS.gene90287:CDS |
| GTAAAGAATCAATACTCCTG+CGG | 0.686611 | 7.4:+42321692 | None:intergenic |
| GTAAAACTTTGATCCAGACC+GGG | 0.689896 | 7.4:-42319955 | MS.gene90287:CDS |
| CTTGGAGACGAACTGCACGT+AGG | 0.749412 | 7.4:-42320013 | MS.gene90287:CDS |
| CACAGATGAGAACAACAGCG+AGG | 0.769396 | 7.4:-42321220 | MS.gene90287:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTAATATTTTGCAT+TGG | - | chr7.4:42321967-42321986 | MS.gene90287:intron | 10.0% |
| !! | CATTTGATCATTTAATATAA+AGG | - | chr7.4:42320332-42320351 | MS.gene90287:intron | 15.0% |
| !! | TCATATAAGTACTTATATAT+AGG | + | chr7.4:42320947-42320966 | None:intergenic | 15.0% |
| !! | TTATATTAAATGATCAAATG+TGG | + | chr7.4:42320332-42320351 | None:intergenic | 15.0% |
| !!! | AAAAACTTTCTTTTCTTAAA+TGG | + | chr7.4:42320016-42320035 | None:intergenic | 15.0% |
| !!! | TTTGAAATATATTTTGACTT+TGG | + | chr7.4:42321010-42321029 | None:intergenic | 15.0% |
| !! | AAATAAAAAAGAGAGAAAGA+AGG | + | chr7.4:42320156-42320175 | None:intergenic | 20.0% |
| !! | AGAAAATCTATAGATACTTT+AGG | - | chr7.4:42321428-42321447 | MS.gene90287:intron | 20.0% |
| !! | ATAATTCCAATATACATGTT+AGG | - | chr7.4:42318676-42318695 | MS.gene90287:intron | 20.0% |
| !! | ATCAATAATCATAAAGAATG+AGG | + | chr7.4:42319914-42319933 | None:intergenic | 20.0% |
| !! | CTTGTAATAATTTGAGAAAA+TGG | - | chr7.4:42318546-42318565 | MS.gene90287:intron | 20.0% |
| !! | TAATTCCAATATACATGTTA+GGG | - | chr7.4:42318677-42318696 | MS.gene90287:intron | 20.0% |
| !! | TCATTCTTTATGATTATTGA+TGG | - | chr7.4:42319913-42319932 | MS.gene90287:CDS | 20.0% |
| !! | TTAAGTTATTTATCCAAACT+GGG | - | chr7.4:42320464-42320483 | MS.gene90287:intron | 20.0% |
| !!! | ATTTAATATAAAGGCTTGTT+TGG | - | chr7.4:42320341-42320360 | MS.gene90287:intron | 20.0% |
| !!! | TATTTTGTTATTATTTGCAG+AGG | - | chr7.4:42321112-42321131 | MS.gene90287:CDS | 20.0% |
| !!! | TCTTTAATAGTCAAAGTATT+AGG | - | chr7.4:42322533-42322552 | MS.gene90287:intron | 20.0% |
| !!! | TTTTTCTGGTATTAACATAA+AGG | - | chr7.4:42318838-42318857 | MS.gene90287:intron | 20.0% |
| ! | AAAATCAAAGGTAAATGTTG+AGG | - | chr7.4:42318969-42318988 | MS.gene90287:intron | 25.0% |
| ! | AAAATTGAAAATTGTGCTGA+AGG | - | chr7.4:42321701-42321720 | MS.gene90287:CDS | 25.0% |
| ! | AAGGAACATATAATGTATCT+CGG | - | chr7.4:42321663-42321682 | MS.gene90287:CDS | 25.0% |
| ! | AATTACTGCAAATGATAGTT+TGG | + | chr7.4:42320226-42320245 | None:intergenic | 25.0% |
| ! | AATTCCAATATACATGTTAG+GGG | - | chr7.4:42318678-42318697 | MS.gene90287:intron | 25.0% |
| ! | ACATCTTTAATGTTACAACA+AGG | - | chr7.4:42321644-42321663 | MS.gene90287:CDS | 25.0% |
| ! | ATATTGTAATACAAGTCAGT+AGG | + | chr7.4:42318480-42318499 | None:intergenic | 25.0% |
| ! | ATTAAGTAATTTCCTAGTAC+CGG | + | chr7.4:42319518-42319537 | None:intergenic | 25.0% |
| ! | CTTAAGTTATTTATCCAAAC+TGG | - | chr7.4:42320463-42320482 | MS.gene90287:intron | 25.0% |
| ! | GCATTATAATGAATTCTCAT+TGG | + | chr7.4:42319032-42319051 | None:intergenic | 25.0% |
| ! | GTATATCAATAAAAAGCTCT+GGG | + | chr7.4:42320578-42320597 | None:intergenic | 25.0% |
| ! | TAATGCTCTTACTAAATTCA+TGG | - | chr7.4:42320707-42320726 | MS.gene90287:intron | 25.0% |
| ! | TACTTATATATAGGCTATCT+TGG | + | chr7.4:42320938-42320957 | None:intergenic | 25.0% |
| ! | TATTGTAATACAAGTCAGTA+GGG | + | chr7.4:42318479-42318498 | None:intergenic | 25.0% |
| ! | TCTGTGACAAAAACAATTAA+TGG | + | chr7.4:42319941-42319960 | None:intergenic | 25.0% |
| ! | TTTAGGTGCAAACATATATT+TGG | - | chr7.4:42321445-42321464 | MS.gene90287:intron | 25.0% |
| ! | TTTCTAATACAGGAAATAAC+TGG | + | chr7.4:42322243-42322262 | None:intergenic | 25.0% |
| !! | GAAAATAATTTTCTTACCCT+AGG | + | chr7.4:42318444-42318463 | None:intergenic | 25.0% |
| !! | GATACAAGCATTTGATATTT+TGG | - | chr7.4:42318736-42318755 | MS.gene90287:intron | 25.0% |
| !! | GTATCTATAGATTTTCTCTA+AGG | + | chr7.4:42321425-42321444 | None:intergenic | 25.0% |
| !! | TATGCTCATTTTCAATAAAC+AGG | - | chr7.4:42321615-42321634 | MS.gene90287:CDS | 25.0% |
| !! | TTCGAGAAATTTTCTAATAC+AGG | + | chr7.4:42322253-42322272 | None:intergenic | 25.0% |
| !!! | ATGATGACGAAAATTTTGTT+AGG | - | chr7.4:42319542-42319561 | MS.gene90287:intron | 25.0% |
| !!! | TCTAACATGCTTGTTATATA+AGG | - | chr7.4:42320493-42320512 | MS.gene90287:intron | 25.0% |
| AAAACACTAAACAAACCTTC+CGG | + | chr7.4:42321951-42321970 | None:intergenic | 30.0% | |
| AACAAACAAGAGAATCAAGT+AGG | - | chr7.4:42318863-42318882 | MS.gene90287:intron | 30.0% | |
| AAGGGAAACATGAAAATCAA+AGG | - | chr7.4:42318957-42318976 | MS.gene90287:intron | 30.0% | |
| ACCAGATACAATAAAGGTTA+AGG | - | chr7.4:42319606-42319625 | MS.gene90287:intron | 30.0% | |
| AGAGTGCGAAAAATATACAA+TGG | + | chr7.4:42321070-42321089 | None:intergenic | 30.0% | |
| AGGAACATATAATGTATCTC+GGG | - | chr7.4:42321664-42321683 | MS.gene90287:CDS | 30.0% | |
| ATAACAAGCATGTTAGACTA+AGG | + | chr7.4:42320490-42320509 | None:intergenic | 30.0% | |
| ATATATTACTTGTGTGTTGC+AGG | - | chr7.4:42322003-42322022 | MS.gene90287:intron | 30.0% | |
| ATGCCTTCAATCAGAAATAT+CGG | - | chr7.4:42318613-42318632 | MS.gene90287:intron | 30.0% | |
| CAAGTAGTTAGAATGGAAAA+AGG | + | chr7.4:42322123-42322142 | None:intergenic | 30.0% | |
| CATTCTAACTACTTGCATAA+AGG | - | chr7.4:42322128-42322147 | MS.gene90287:intron | 30.0% | |
| CGATTTAGACTATCTGATTA+AGG | - | chr7.4:42322309-42322328 | MS.gene90287:CDS | 30.0% | |
| CTTTATGCAAGTAGTTAGAA+TGG | + | chr7.4:42322130-42322149 | None:intergenic | 30.0% | |
| GATGAAATTCGATTATGTCT+CGG | + | chr7.4:42321291-42321310 | None:intergenic | 30.0% | |
| GGTATATCAATAAAAAGCTC+TGG | + | chr7.4:42320579-42320598 | None:intergenic | 30.0% | |
| GTTCTATTAATCCATCAGAT+CGG | + | chr7.4:42319393-42319412 | None:intergenic | 30.0% | |
| TCCTTAACCTTTATTGTATC+TGG | + | chr7.4:42319610-42319629 | None:intergenic | 30.0% | |
| TCTTGATCTAATGATCCAAT+CGG | - | chr7.4:42322401-42322420 | MS.gene90287:CDS | 30.0% | |
| TGACGAAAATCCATACATAA+TGG | + | chr7.4:42321375-42321394 | None:intergenic | 30.0% | |
| TTAGACTATCTGATTAAGGT+TGG | - | chr7.4:42322313-42322332 | MS.gene90287:CDS | 30.0% | |
| TTCAATGTTATCACATGTGT+CGG | - | chr7.4:42318575-42318594 | MS.gene90287:intron | 30.0% | |
| TTCATGACAATCATCTTGAA+GGG | - | chr7.4:42319287-42319306 | MS.gene90287:CDS | 30.0% | |
| TTCTAGGTAACCATTATGTA+TGG | - | chr7.4:42321362-42321381 | MS.gene90287:intron | 30.0% | |
| TTTCATGACAATCATCTTGA+AGG | - | chr7.4:42319286-42319305 | MS.gene90287:CDS | 30.0% | |
| ! | AATGGTTACCTAGAAAGTTT+TGG | + | chr7.4:42321357-42321376 | None:intergenic | 30.0% |
| ! | AGTTGATTCTTCTTGTACAA+GGG | - | chr7.4:42320087-42320106 | MS.gene90287:intron | 30.0% |
| ! | ATTATGTATGGATTTTCGTC+AGG | - | chr7.4:42321374-42321393 | MS.gene90287:intron | 30.0% |
| ! | ATTCTTTGATTTCAGTTCAG+TGG | + | chr7.4:42319569-42319588 | None:intergenic | 30.0% |
| ! | CTTCTTTTCTCAATGTTGAA+TGG | - | chr7.4:42319140-42319159 | MS.gene90287:CDS | 30.0% |
| ! | GAAGAGTTAGCTTAAAACAT+TGG | - | chr7.4:42322171-42322190 | MS.gene90287:intron | 30.0% |
| ! | TTTGCAATCTGTTTCCTTTT+TGG | - | chr7.4:42320173-42320192 | MS.gene90287:intron | 30.0% |
| !! | AGGTTGGATTACAGTTTTAA+TGG | - | chr7.4:42318390-42318409 | MS.gene90287:CDS | 30.0% |
| !! | AGTATTGATTCTTTACCGAA+TGG | - | chr7.4:42319490-42319509 | MS.gene90287:CDS | 30.0% |
| !! | GTAACACCATAGTCTTATTA+GGG | - | chr7.4:42322485-42322504 | MS.gene90287:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr7.4:42319807-42319826 | MS.gene90287:intron | 30.0% |
| !! | TGTAACACCATAGTCTTATT+AGG | - | chr7.4:42322484-42322503 | MS.gene90287:intron | 30.0% |
| !!! | TAGGAAGCATTTTAAAGACT+AGG | - | chr7.4:42322552-42322571 | MS.gene90287:intron | 30.0% |
| AAATCAGGGAATTCCTACTT+TGG | - | chr7.4:42321851-42321870 | MS.gene90287:CDS | 35.0% | |
| AAATCCTTTCTCTATGACTG+TGG | + | chr7.4:42322461-42322480 | None:intergenic | 35.0% | |
| AAATGTGGTCAATCATTTCG+CGG | + | chr7.4:42320317-42320336 | None:intergenic | 35.0% | |
| AAGCTAACTCTTCCACTATT+TGG | + | chr7.4:42322164-42322183 | None:intergenic | 35.0% | |
| AATCAAGTGAAAACGCCTTA+TGG | + | chr7.4:42320903-42320922 | None:intergenic | 35.0% | |
| AATCCTTTCTCTATGACTGT+GGG | + | chr7.4:42322460-42322479 | None:intergenic | 35.0% | |
| ACCTTTATTGTATCTGGTGA+TGG | + | chr7.4:42319604-42319623 | None:intergenic | 35.0% | |
| ACTAGGAATGTGCAAAATGA+AGG | + | chr7.4:42321516-42321535 | None:intergenic | 35.0% | |
| ACTATCTGATTAAGGTTGGA+TGG | - | chr7.4:42322317-42322336 | MS.gene90287:CDS | 35.0% | |
| AGACTGTTTGGAAAAGCTTA+TGG | - | chr7.4:42320859-42320878 | MS.gene90287:intron | 35.0% | |
| AGCTAAATACCATTCACGAA+AGG | + | chr7.4:42319640-42319659 | None:intergenic | 35.0% | |
| AGCTAATGCATCCATGTTAA+TGG | + | chr7.4:42321813-42321832 | None:intergenic | 35.0% | |
| AGTAAAACTTTGATCCAGAC+CGG | - | chr7.4:42321219-42321238 | MS.gene90287:intron | 35.0% | |
| ATACCTGAAACTGCAACTAT+TGG | - | chr7.4:42320594-42320613 | MS.gene90287:CDS | 35.0% | |
| ATCAAAGGTAAATGTTGAGG+AGG | - | chr7.4:42318972-42318991 | MS.gene90287:intron | 35.0% | |
| ATGACAAACGTCATAGGTTA+GGG | - | chr7.4:42321253-42321272 | MS.gene90287:intron | 35.0% | |
| CAAAACTCTTCAATGATGCA+TGG | - | chr7.4:42319855-42319874 | MS.gene90287:CDS | 35.0% | |
| CAGAAATATCGGTACTACAT+AGG | - | chr7.4:42318624-42318643 | MS.gene90287:intron | 35.0% | |
| CCTTTATTGTATCTGGTGAT+GGG | + | chr7.4:42319603-42319622 | None:intergenic | 35.0% | |
| GAATCAAGTAGGATCGTTTA+AGG | - | chr7.4:42318874-42318893 | MS.gene90287:intron | 35.0% | |
| GTAAAGAATCAATACTCCTG+CGG | + | chr7.4:42319486-42319505 | None:intergenic | 35.0% | |
| GTAAATGTTGAGGAGGTTAA+TGG | - | chr7.4:42318979-42318998 | MS.gene90287:intron | 35.0% | |
| GTACAATACTGAAGCATATG+TGG | - | chr7.4:42320736-42320755 | MS.gene90287:intron | 35.0% | |
| TAATCTTCTTCCCTTGAAGA+AGG | + | chr7.4:42321191-42321210 | None:intergenic | 35.0% | |
| TACGGAAAAACAAGCCAAAA+AGG | + | chr7.4:42320190-42320209 | None:intergenic | 35.0% | |
| TAGCTTACGATATGTCCATA+AGG | - | chr7.4:42320885-42320904 | MS.gene90287:intron | 35.0% | |
| TCAAAATTCTGCAGGATAAG+TGG | - | chr7.4:42322659-42322678 | MS.gene90287:intron | 35.0% | |
| TCATGTGGAGAAATCTTCAT+TGG | - | chr7.4:42319450-42319469 | MS.gene90287:CDS | 35.0% | |
| TCTTCTTGTACAAGGGTTAA+TGG | - | chr7.4:42320094-42320113 | MS.gene90287:intron | 35.0% | |
| TGCTCTTACTAAATTCATGG+AGG | - | chr7.4:42320710-42320729 | MS.gene90287:intron | 35.0% | |
| TTAATACCAGAAAAAGCGAG+AGG | + | chr7.4:42318833-42318852 | None:intergenic | 35.0% | |
| TTATTTGCAGAGGACAGTAA+TGG | - | chr7.4:42321122-42321141 | MS.gene90287:CDS | 35.0% | |
| TTTGTCATCTTGAGATATCC+CGG | + | chr7.4:42321241-42321260 | None:intergenic | 35.0% | |
| ! | AGCTTAAAACATTGGCTAGT+AGG | - | chr7.4:42322179-42322198 | MS.gene90287:intron | 35.0% |
| ! | AGGCTATCTTGGAGATTTTA+TGG | + | chr7.4:42320927-42320946 | None:intergenic | 35.0% |
| ! | CAGTTGATTCTTCTTGTACA+AGG | - | chr7.4:42320086-42320105 | MS.gene90287:intron | 35.0% |
| ! | CGTGATTTTCAAAATTCTGC+AGG | - | chr7.4:42322651-42322670 | MS.gene90287:intron | 35.0% |
| ! | GCAGAATGATGAATTTTCGT+TGG | - | chr7.4:42319079-42319098 | MS.gene90287:intron | 35.0% |
| ! | GTACCGATATTTCTGATTGA+AGG | + | chr7.4:42318619-42318638 | None:intergenic | 35.0% |
| ! | TGCAATCTTTTGATGCTCTT+TGG | + | chr7.4:42319420-42319439 | None:intergenic | 35.0% |
| ! | TGTTATATAAGGCTCTGACA+TGG | - | chr7.4:42320504-42320523 | MS.gene90287:intron | 35.0% |
| !! | AAAAAGCTCTGGGACTTTAA+AGG | + | chr7.4:42320568-42320587 | None:intergenic | 35.0% |
| !! | TCGAACTTATGTCGATTTGA+AGG | - | chr7.4:42322067-42322086 | MS.gene90287:intron | 35.0% |
| !! | TCTACTTCTAGAACCGAAAA+TGG | + | chr7.4:42321896-42321915 | None:intergenic | 35.0% |
| !!! | TGATATTTTGGCTAGTGTAG+CGG | - | chr7.4:42318748-42318767 | MS.gene90287:intron | 35.0% |
| !!! | TTTGGCTTGTTTTTCCGTAT+TGG | - | chr7.4:42320191-42320210 | MS.gene90287:intron | 35.0% |
| AAAGATGCTAGCTAGGTTCA+AGG | + | chr7.4:42320785-42320804 | None:intergenic | 40.0% | |
| AACCAGTGGTTAGGAAACAA+GGG | + | chr7.4:42321329-42321348 | None:intergenic | 40.0% | |
| AACTCTGAGTCTTCTGCAAA+AGG | + | chr7.4:42318778-42318797 | None:intergenic | 40.0% | |
| AAGGACAGAATGTCATTGAG+AGG | - | chr7.4:42319311-42319330 | MS.gene90287:CDS | 40.0% | |
| AAGGAGGAGCAATTTGAGAA+TGG | - | chr7.4:42318893-42318912 | MS.gene90287:intron | 40.0% | |
| AATGCATCCATGTTAATGGC+AGG | + | chr7.4:42321809-42321828 | None:intergenic | 40.0% | |
| ACAATATGAATCACCGAGAC+AGG | - | chr7.4:42318493-42318512 | MS.gene90287:CDS | 40.0% | |
| AGAAGCAGCATTATCAGGAA+CGG | + | chr7.4:42318801-42318820 | None:intergenic | 40.0% | |
| AGGACAGAATGTCATTGAGA+GGG | - | chr7.4:42319312-42319331 | MS.gene90287:CDS | 40.0% | |
| AGTATGAACTCTCTGCATTG+TGG | - | chr7.4:42322619-42322638 | MS.gene90287:intron | 40.0% | |
| CAATATACATGTTAGGGGAG+GGG | - | chr7.4:42318683-42318702 | MS.gene90287:intron | 40.0% | |
| CATAAGTTCGATGCTTTGCA+TGG | + | chr7.4:42322058-42322077 | None:intergenic | 40.0% | |
| CATGTTTCCCTTGCAAACTA+GGG | + | chr7.4:42318949-42318968 | None:intergenic | 40.0% | |
| CCAATATACATGTTAGGGGA+GGG | - | chr7.4:42318682-42318701 | MS.gene90287:intron | 40.0% | |
| CCCATCACCAGATACAATAA+AGG | - | chr7.4:42319600-42319619 | MS.gene90287:intron | 40.0% | |
| CGCATTAAAAACCGATCTGA+TGG | - | chr7.4:42319379-42319398 | MS.gene90287:CDS | 40.0% | |
| CTCAAGATGACAAACGTCAT+AGG | - | chr7.4:42321247-42321266 | MS.gene90287:intron | 40.0% | |
| GAACCAATAGTTGCAGTTTC+AGG | + | chr7.4:42320600-42320619 | None:intergenic | 40.0% | |
| GAACCTAGCTAGCATCTTTA+GGG | - | chr7.4:42320786-42320805 | MS.gene90287:intron | 40.0% | |
| GATGACAAACGTCATAGGTT+AGG | - | chr7.4:42321252-42321271 | MS.gene90287:intron | 40.0% | |
| GATTCTTTACCGAATGGTTC+CGG | - | chr7.4:42319496-42319515 | MS.gene90287:CDS | 40.0% | |
| GCAGTTGAAAAACTAGGAAC+CGG | - | chr7.4:42321929-42321948 | MS.gene90287:intron | 40.0% | |
| GTAAAACTTTGATCCAGACC+GGG | - | chr7.4:42321220-42321239 | MS.gene90287:intron | 40.0% | |
| GTCTCCAAGTATAGTTGTCA+CGG | + | chr7.4:42321151-42321170 | None:intergenic | 40.0% | |
| GTGGAGAAATCTTCATTGGA+GGG | - | chr7.4:42319454-42319473 | MS.gene90287:CDS | 40.0% | |
| GTTCACGACCAAAACTTTCT+AGG | - | chr7.4:42321346-42321365 | MS.gene90287:intron | 40.0% | |
| GTTCAGGCAGTTGAAAAACT+AGG | - | chr7.4:42321923-42321942 | MS.gene90287:intron | 40.0% | |
| TAACATGGATGCATTAGCTG+TGG | - | chr7.4:42321814-42321833 | MS.gene90287:CDS | 40.0% | |
| TAAGTACCTGTGAGACTGTT+TGG | - | chr7.4:42320847-42320866 | MS.gene90287:intron | 40.0% | |
| TACAAGTCAGTAGGGAATGT+AGG | + | chr7.4:42318471-42318490 | None:intergenic | 40.0% | |
| TAGAGCTTCAAGATCTCCTA+GGG | - | chr7.4:42318425-42318444 | MS.gene90287:CDS | 40.0% | |
| TAGCGGCTATATCATTGTAG+CGG | - | chr7.4:42319824-42319843 | MS.gene90287:intron | 40.0% | |
| TATTACTTGTGTGTTGCAGG+TGG | - | chr7.4:42322006-42322025 | MS.gene90287:intron | 40.0% | |
| TCAAGTAGGATCGTTTAAGG+AGG | - | chr7.4:42318877-42318896 | MS.gene90287:intron | 40.0% | |
| TCATAGGTTAGGGTTCATGT+TGG | - | chr7.4:42321263-42321282 | MS.gene90287:intron | 40.0% | |
| TCATGTTTCCCTTGCAAACT+AGG | + | chr7.4:42318950-42318969 | None:intergenic | 40.0% | |
| TCCAACATTGAGTCAGTATC+AGG | - | chr7.4:42321570-42321589 | MS.gene90287:CDS | 40.0% | |
| TCCAATATACATGTTAGGGG+AGG | - | chr7.4:42318681-42318700 | MS.gene90287:intron | 40.0% | |
| TCTTATCTGCTCATGCCTAT+TGG | - | chr7.4:42322761-42322780 | MS.gene90287:CDS | 40.0% | |
| TGAACCTAGCTAGCATCTTT+AGG | - | chr7.4:42320785-42320804 | MS.gene90287:intron | 40.0% | |
| TGCTTGTATCTGATTGCTGT+CGG | + | chr7.4:42318726-42318745 | None:intergenic | 40.0% | |
| TGTGGAGAAATCTTCATTGG+AGG | - | chr7.4:42319453-42319472 | MS.gene90287:CDS | 40.0% | |
| TTGAAAAACTAGGAACCGGA+AGG | - | chr7.4:42321933-42321952 | MS.gene90287:intron | 40.0% | |
| TTGCAGTGCAGAAAATCATG+TGG | - | chr7.4:42319435-42319454 | MS.gene90287:CDS | 40.0% | |
| TTGCTGCTATATGACTACAC+TGG | + | chr7.4:42319736-42319755 | None:intergenic | 40.0% | |
| TTTGGATCGTTGAGCCAATA+CGG | + | chr7.4:42320208-42320227 | None:intergenic | 40.0% | |
| ! | GAAGTGCCCTAATAAGACTA+TGG | + | chr7.4:42322494-42322513 | None:intergenic | 40.0% |
| ! | GCATTGTTGTTGAGACCAAT+AGG | + | chr7.4:42322779-42322798 | None:intergenic | 40.0% |
| ! | GGTTCTTTTGTGCCAAATAG+TGG | - | chr7.4:42322149-42322168 | MS.gene90287:intron | 40.0% |
| ! | TCTTTTGATGCTCTTTGGCT+TGG | + | chr7.4:42319415-42319434 | None:intergenic | 40.0% |
| !! | CACTGGCTTGAATCACAATT+CGG | + | chr7.4:42319719-42319738 | None:intergenic | 40.0% |
| !! | TATTGTATCTGGTGATGGGT+CGG | + | chr7.4:42319599-42319618 | None:intergenic | 40.0% |
| !!! | AAAGATCCTCTCGCTTTTTC+TGG | - | chr7.4:42318824-42318843 | MS.gene90287:intron | 40.0% |
| !!! | ATTTTCTCTAAGGCGTCGTT+TGG | + | chr7.4:42321415-42321434 | None:intergenic | 40.0% |
| !!! | GATATTTTGGCTAGTGTAGC+GGG | - | chr7.4:42318749-42318768 | MS.gene90287:intron | 40.0% |
| AATCAATACTCCTGCGGAAG+TGG | + | chr7.4:42319480-42319499 | None:intergenic | 45.0% | |
| ACATCCCAGCTCTCGTAAAT+AGG | - | chr7.4:42322343-42322362 | MS.gene90287:CDS | 45.0% | |
| ACGTAGGCATCCTTCTTCAA+GGG | - | chr7.4:42321178-42321197 | MS.gene90287:CDS | 45.0% | |
| ACTTGCAGTGAAGTTGTCTC+TGG | - | chr7.4:42318917-42318936 | MS.gene90287:intron | 45.0% | |
| AGAAGTTCTTCCTGAGTCCA+AGG | - | chr7.4:42320272-42320291 | MS.gene90287:intron | 45.0% | |
| AGGAATTCCCTGATTTACGC+CGG | + | chr7.4:42321847-42321866 | None:intergenic | 45.0% | |
| CAAGAATCTCTCCTCAGCAA+AGG | - | chr7.4:42322701-42322720 | MS.gene90287:intron | 45.0% | |
| CACAGTTCCTGCCATTAACA+TGG | - | chr7.4:42321799-42321818 | MS.gene90287:CDS | 45.0% | |
| CATCCCAGCTCTCGTAAATA+GGG | - | chr7.4:42322344-42322363 | MS.gene90287:CDS | 45.0% | |
| CATTAGCTGTGGTTCCATAC+CGG | - | chr7.4:42321825-42321844 | MS.gene90287:CDS | 45.0% | |
| CCCTCCCCTAACATGTATAT+TGG | + | chr7.4:42318685-42318704 | None:intergenic | 45.0% | |
| CGCACTCTCACAATGTCTAT+TGG | - | chr7.4:42321082-42321101 | MS.gene90287:CDS | 45.0% | |
| CTAGAGCTTCAAGATCTCCT+AGG | - | chr7.4:42318424-42318443 | MS.gene90287:CDS | 45.0% | |
| CTAGGAGATCTTGAAGCTCT+AGG | + | chr7.4:42318426-42318445 | None:intergenic | 45.0% | |
| GAACCAGTGGTTAGGAAACA+AGG | + | chr7.4:42321330-42321349 | None:intergenic | 45.0% | |
| GAAGCCGTGACAACTATACT+TGG | - | chr7.4:42321144-42321163 | MS.gene90287:CDS | 45.0% | |
| GAAGTTCTTCCTGAGTCCAA+GGG | - | chr7.4:42320273-42320292 | MS.gene90287:intron | 45.0% | |
| GACAATCATCTTGAAGGGCA+AGG | - | chr7.4:42319292-42319311 | MS.gene90287:CDS | 45.0% | |
| GATGCAAGTCCTTTCGTGAA+TGG | - | chr7.4:42319628-42319647 | MS.gene90287:intron | 45.0% | |
| GCTTGTATCTGATTGCTGTC+GGG | + | chr7.4:42318725-42318744 | None:intergenic | 45.0% | |
| GTTCCCACAGTCATAGAGAA+AGG | - | chr7.4:42322454-42322473 | MS.gene90287:CDS | 45.0% | |
| TCACAGGTACTTACACTAGC+AGG | + | chr7.4:42320840-42320859 | None:intergenic | 45.0% | |
| TCGAATAAGCCGATCCAAAC+AGG | + | chr7.4:42320812-42320831 | None:intergenic | 45.0% | |
| TGCTGAAGGTGATCTCAACA+TGG | - | chr7.4:42321715-42321734 | MS.gene90287:CDS | 45.0% | |
| TGTATCTCGGGAACGTTCTA+CGG | - | chr7.4:42321676-42321695 | MS.gene90287:CDS | 45.0% | |
| TGTTAGACTAAGGCCCAGTT+TGG | + | chr7.4:42320480-42320499 | None:intergenic | 45.0% | |
| TTCCATACCGGCGTAAATCA+GGG | - | chr7.4:42321837-42321856 | MS.gene90287:CDS | 45.0% | |
| TTCGCAGAAGCAGCATTATC+AGG | + | chr7.4:42318806-42318825 | None:intergenic | 45.0% | |
| TTTCCTACCGTTACAACCCT+TGG | + | chr7.4:42320292-42320311 | None:intergenic | 45.0% | |
| ! | GATGTGTCCCTAGTTTGCAA+GGG | - | chr7.4:42318939-42318958 | MS.gene90287:intron | 45.0% |
| ! | GATTCTTGCTGTGTGAACCA+AGG | + | chr7.4:42322689-42322708 | None:intergenic | 45.0% |
| ! | GCTTTTCCAAACAGTCTCAC+AGG | + | chr7.4:42320856-42320875 | None:intergenic | 45.0% |
| ! | TCGTCTCTCTCACATTGACT+AGG | + | chr7.4:42321533-42321552 | None:intergenic | 45.0% |
| ! | TTCCTAGTACCGGAACCATT+CGG | + | chr7.4:42319508-42319527 | None:intergenic | 45.0% |
| !! | AAGTTTTGGTCGTGAACCAG+TGG | + | chr7.4:42321343-42321362 | None:intergenic | 45.0% |
| !! | AGAAGTAGAAGCGTTGGTTC+AGG | - | chr7.4:42321907-42321926 | MS.gene90287:CDS | 45.0% |
| !! | ATTGTATCTGGTGATGGGTC+GGG | + | chr7.4:42319598-42319617 | None:intergenic | 45.0% |
| !! | GCCTGATACTGACTCAATGT+TGG | + | chr7.4:42321574-42321593 | None:intergenic | 45.0% |
| !! | GGTTCTAGAAGTAGAAGCGT+TGG | - | chr7.4:42321901-42321920 | MS.gene90287:CDS | 45.0% |
| !! | TAGCATCTTTAGGGCCTGTT+TGG | - | chr7.4:42320795-42320814 | MS.gene90287:intron | 45.0% |
| !! | TCTTTAGGGCCTGTTTGGAT+CGG | - | chr7.4:42320800-42320819 | MS.gene90287:intron | 45.0% |
| !! | TGCAACTATTGGTTCGCTGA+AGG | - | chr7.4:42320605-42320624 | MS.gene90287:CDS | 45.0% |
| AATGGCACGAACCATGGTAC+AGG | - | chr7.4:42320112-42320131 | MS.gene90287:intron | 50.0% | |
| ACTCTGTCGAGAAGCTCTTG+AGG | + | chr7.4:42322742-42322761 | None:intergenic | 50.0% | |
| ACTGTCAGACGTAGACGATG+AGG | + | chr7.4:42320047-42320066 | None:intergenic | 50.0% | |
| AGCTGAAGCTTCTCCTACAG+AGG | + | chr7.4:42321744-42321763 | None:intergenic | 50.0% | |
| AGGCCCTAAAGATGCTAGCT+AGG | + | chr7.4:42320792-42320811 | None:intergenic | 50.0% | |
| AGGGTTAATGGCACGAACCA+TGG | - | chr7.4:42320106-42320125 | MS.gene90287:intron | 50.0% | |
| AGTCCAAGGGTTGTAACGGT+AGG | - | chr7.4:42320286-42320305 | MS.gene90287:intron | 50.0% | |
| ATCTCTCCTCAGCAAAGGAG+AGG | - | chr7.4:42322706-42322725 | MS.gene90287:intron | 50.0% | |
| CACAGATGAGAACAACAGCG+AGG | - | chr7.4:42319955-42319974 | MS.gene90287:CDS | 50.0% | |
| CACGTAGGCATCCTTCTTCA+AGG | - | chr7.4:42321177-42321196 | MS.gene90287:CDS | 50.0% | |
| CATCGTCTACGTCTGACAGT+TGG | - | chr7.4:42320047-42320066 | MS.gene90287:intron | 50.0% | |
| CATCTTGAGATATCCCGGTC+TGG | + | chr7.4:42321236-42321255 | None:intergenic | 50.0% | |
| CCGAAAATGGCCTCCTGATT+CGG | + | chr7.4:42321883-42321902 | None:intergenic | 50.0% | |
| CCTGAGTCCAAGGGTTGTAA+CGG | - | chr7.4:42320282-42320301 | MS.gene90287:intron | 50.0% | |
| CTCAACATGGTCTCCTCTGT+AGG | - | chr7.4:42321728-42321747 | MS.gene90287:CDS | 50.0% | |
| GCAGGATAAGTGGAAGACCT+TGG | - | chr7.4:42322669-42322688 | MS.gene90287:intron | 50.0% | |
| GGACCCTATTTACGAGAGCT+GGG | + | chr7.4:42322350-42322369 | None:intergenic | 50.0% | |
| GTTCCATACCGGCGTAAATC+AGG | - | chr7.4:42321836-42321855 | MS.gene90287:CDS | 50.0% | |
| TACCGAATGGTTCCGGTACT+AGG | - | chr7.4:42319503-42319522 | MS.gene90287:CDS | 50.0% | |
| TCGAGAAGCTCTTGAGGAAC+AGG | + | chr7.4:42322736-42322755 | None:intergenic | 50.0% | |
| TGGACCCTATTTACGAGAGC+TGG | + | chr7.4:42322351-42322370 | None:intergenic | 50.0% | |
| TTCCCTGATTTACGCCGGTA+TGG | + | chr7.4:42321842-42321861 | None:intergenic | 50.0% | |
| TTGGTCGTGAACCAGTGGTT+AGG | + | chr7.4:42321338-42321357 | None:intergenic | 50.0% | |
| TTGTGCAGTTGTGCCTGTCT+CGG | + | chr7.4:42318509-42318528 | None:intergenic | 50.0% | |
| ! | GAAACGTTTTCCAGAGTCGC+AGG | - | chr7.4:42319253-42319272 | MS.gene90287:CDS | 50.0% |
| ! | GACAGTTGGTCTCACTGTCA+AGG | - | chr7.4:42320061-42320080 | MS.gene90287:intron | 50.0% |
| ! | GACCCTTGTTTCCTAACCAC+TGG | - | chr7.4:42321324-42321343 | MS.gene90287:intron | 50.0% |
| ! | GGATGTGTCCCTAGTTTGCA+AGG | - | chr7.4:42318938-42318957 | MS.gene90287:intron | 50.0% |
| !! | CATGTCAAAGTGTCGAGCTC+TGG | - | chr7.4:42321775-42321794 | MS.gene90287:CDS | 50.0% |
| !! | CCGAATCAGGAGGCCATTTT+CGG | - | chr7.4:42321880-42321899 | MS.gene90287:CDS | 50.0% |
| CCGTTACAACCCTTGGACTC+AGG | + | chr7.4:42320285-42320304 | None:intergenic | 55.0% | |
| CGATGAATCACCTGCGACTC+TGG | + | chr7.4:42319266-42319285 | None:intergenic | 55.0% | |
| CTTGGAGACGAACTGCACGT+AGG | - | chr7.4:42321162-42321181 | MS.gene90287:CDS | 55.0% | |
| GATTCGGCGCTGTCCAAAGT+AGG | + | chr7.4:42321867-42321886 | None:intergenic | 55.0% | |
| GCATTGTTCCGCCTGTACCA+TGG | + | chr7.4:42320126-42320145 | None:intergenic | 55.0% | |
| GGTACAGGCGGAACAATGCA+TGG | - | chr7.4:42320127-42320146 | MS.gene90287:intron | 55.0% | |
| GGTTCTCCTCTCCTTTGCTG+AGG | + | chr7.4:42322715-42322734 | None:intergenic | 55.0% | |
| ! | ACTTTGGACAGCGCCGAATC+AGG | - | chr7.4:42321867-42321886 | MS.gene90287:CDS | 55.0% |
| ! | GTTAGGGGAGGGGTACAATC+AGG | - | chr7.4:42318693-42318712 | MS.gene90287:intron | 55.0% |
| GCACTCACGCAACTGCCGAT+TGG | + | chr7.4:42322419-42322438 | None:intergenic | 60.0% | |
| GGCACGAACCATGGTACAGG+CGG | - | chr7.4:42320115-42320134 | MS.gene90287:intron | 60.0% | |
| ! | TTGGACAGCGCCGAATCAGG+AGG | - | chr7.4:42321870-42321889 | MS.gene90287:CDS | 60.0% |
| CATTGGAGGGCCACTTCCGC+AGG | - | chr7.4:42319467-42319486 | MS.gene90287:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 42318375 | 42322822 | 42318375 | ID=MS.gene90287 |
| chr7.4 | mRNA | 42318375 | 42322822 | 42318375 | ID=MS.gene90287.t1;Parent=MS.gene90287 |
| chr7.4 | exon | 42322751 | 42322822 | 42322751 | ID=MS.gene90287.t1.exon1;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42322751 | 42322822 | 42322751 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42322219 | 42322499 | 42322219 | ID=MS.gene90287.t1.exon2;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42322219 | 42322499 | 42322219 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42321548 | 42321930 | 42321548 | ID=MS.gene90287.t1.exon3;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42321548 | 42321930 | 42321548 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42321049 | 42321237 | 42321049 | ID=MS.gene90287.t1.exon4;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42321049 | 42321237 | 42321049 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42320894 | 42320956 | 42320894 | ID=MS.gene90287.t1.exon5;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42320894 | 42320956 | 42320894 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42320571 | 42320650 | 42320571 | ID=MS.gene90287.t1.exon6;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42320571 | 42320650 | 42320571 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42319830 | 42320065 | 42319830 | ID=MS.gene90287.t1.exon7;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42319830 | 42320065 | 42319830 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42319243 | 42319560 | 42319243 | ID=MS.gene90287.t1.exon8;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42319243 | 42319560 | 42319243 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42319109 | 42319172 | 42319109 | ID=MS.gene90287.t1.exon9;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42319109 | 42319172 | 42319109 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| chr7.4 | exon | 42318375 | 42318524 | 42318375 | ID=MS.gene90287.t1.exon10;Parent=MS.gene90287.t1 |
| chr7.4 | CDS | 42318375 | 42318524 | 42318375 | ID=cds.MS.gene90287.t1;Parent=MS.gene90287.t1 |
| Gene Sequence |
| Protein sequence |
