Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94260.t1 | XP_003623171.2 | 95.6 | 225 | 10 | 0 | 1 | 225 | 8 | 232 | 6.70E-118 | 433.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94260.t1 | P32110 | 67.7 | 226 | 71 | 2 | 1 | 225 | 1 | 225 | 3.9e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94260.t1 | I3SEW8 | 95.6 | 225 | 10 | 0 | 1 | 225 | 1 | 225 | 4.8e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene94260 | -0.82232 | 2.52E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene94260 | -0.812659 | 3.79E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene94260 | -0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene94260 | -0.835633 | 1.50E-56 | -1.69E-46 |
| MS.gene049549 | MS.gene94260 | 0.804803 | 1.81E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene94260 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene94260 | -0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene94260 | -0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene94260 | 0.818993 | 1.47E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene94260 | -0.840267 | 9.64E-58 | -1.69E-46 |
| MS.gene050577 | MS.gene94260 | -0.811028 | 8.59E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene94260 | -0.822067 | 2.89E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene94260 | -0.806317 | 8.73E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene94260 | -0.823604 | 1.27E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene94260 | -0.821023 | 5.03E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene94260 | 0.848951 | 4.42E-60 | -1.69E-46 |
| MS.gene050986 | MS.gene94260 | -0.827469 | 1.54E-54 | -1.69E-46 |
| MS.gene05104 | MS.gene94260 | 0.812558 | 3.99E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene94260 | 0.837375 | 5.39E-57 | -1.69E-46 |
| MS.gene051138 | MS.gene94260 | 0.840931 | 6.46E-58 | -1.69E-46 |
| MS.gene051364 | MS.gene94260 | 0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene94260 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene94260 | -0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene051632 | MS.gene94260 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene052211 | MS.gene94260 | 0.824715 | 6.95E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene94260 | -0.811847 | 5.70E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene94260 | -0.816034 | 6.81E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene94260 | -0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene94260 | 0.839005 | 2.05E-57 | -1.69E-46 |
| MS.gene053488 | MS.gene94260 | 0.846121 | 2.65E-59 | -1.69E-46 |
| MS.gene054595 | MS.gene94260 | -0.809745 | 1.63E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene94260 | -0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene94260 | 0.82148 | 3.95E-53 | -1.69E-46 |
| MS.gene054707 | MS.gene94260 | 0.815666 | 8.22E-52 | -1.69E-46 |
| MS.gene054708 | MS.gene94260 | 0.804442 | 2.16E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene94260 | -0.824179 | 9.29E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene94260 | -0.820283 | 7.44E-53 | -1.69E-46 |
| MS.gene055124 | MS.gene94260 | 0.832646 | 8.40E-56 | -1.69E-46 |
| MS.gene055139 | MS.gene94260 | 0.817179 | 3.77E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene94260 | 0.871484 | 6.60E-67 | -1.69E-46 |
| MS.gene055202 | MS.gene94260 | 0.812768 | 3.59E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene94260 | -0.826588 | 2.50E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene94260 | -0.843081 | 1.74E-58 | -1.69E-46 |
| MS.gene05589 | MS.gene94260 | -0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene056218 | MS.gene94260 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene056224 | MS.gene94260 | 0.814522 | 1.48E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene94260 | -0.843243 | 1.58E-58 | -1.69E-46 |
| MS.gene056590 | MS.gene94260 | 0.813926 | 2.00E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene94260 | 0.81572 | 8.00E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene94260 | -0.822851 | 1.90E-53 | -1.69E-46 |
| MS.gene056748 | MS.gene94260 | 0.801466 | 8.89E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene94260 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene057549 | MS.gene94260 | 0.801726 | 7.86E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene94260 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene94260 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene94260 | 0.826072 | 3.32E-54 | -1.69E-46 |
| MS.gene058108 | MS.gene94260 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene058109 | MS.gene94260 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene058111 | MS.gene94260 | 0.862508 | 4.82E-64 | -1.69E-46 |
| MS.gene058117 | MS.gene94260 | 0.819098 | 1.39E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene94260 | -0.803145 | 4.01E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene94260 | 0.843781 | 1.13E-58 | -1.69E-46 |
| MS.gene058173 | MS.gene94260 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene94260 | 0.852546 | 4.30E-61 | -1.69E-46 |
| MS.gene058268 | MS.gene94260 | 0.803589 | 3.24E-49 | -1.69E-46 |
| MS.gene058269 | MS.gene94260 | 0.808073 | 3.70E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene94260 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene94260 | -0.820406 | 6.98E-53 | -1.69E-46 |
| MS.gene058493 | MS.gene94260 | 0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene94260 | -0.816756 | 4.69E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene94260 | -0.839959 | 1.16E-57 | -1.69E-46 |
| MS.gene059045 | MS.gene94260 | 0.802923 | 4.46E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene94260 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene94260 | -0.826459 | 2.68E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene94260 | -0.843851 | 1.09E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene94260 | -0.818015 | 2.44E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene94260 | -0.837326 | 5.55E-57 | -1.69E-46 |
| MS.gene060823 | MS.gene94260 | 0.800076 | 1.71E-48 | -1.69E-46 |
| MS.gene060982 | MS.gene94260 | -0.805503 | 1.29E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene94260 | 0.805636 | 1.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94260.t1 | MTR_7g065260 | 95.556 | 225 | 10 | 0 | 1 | 225 | 8 | 232 | 3.79e-148 | 412 |
| MS.gene94260.t1 | MTR_7g065590 | 77.778 | 225 | 49 | 1 | 1 | 225 | 1 | 224 | 1.34e-122 | 347 |
| MS.gene94260.t1 | MTR_7g065230 | 78.222 | 225 | 43 | 2 | 1 | 225 | 1 | 219 | 1.27e-120 | 342 |
| MS.gene94260.t1 | MTR_7g065290 | 76.000 | 225 | 53 | 1 | 1 | 225 | 1 | 224 | 1.86e-120 | 341 |
| MS.gene94260.t1 | MTR_7g065600 | 75.556 | 225 | 54 | 1 | 1 | 225 | 1 | 224 | 5.63e-120 | 340 |
| MS.gene94260.t1 | MTR_7g065270 | 74.222 | 225 | 57 | 1 | 1 | 225 | 1 | 224 | 1.19e-115 | 329 |
| MS.gene94260.t1 | MTR_7g065265 | 74.667 | 225 | 56 | 1 | 1 | 225 | 1 | 224 | 3.08e-115 | 328 |
| MS.gene94260.t1 | MTR_7g065660 | 66.372 | 226 | 74 | 2 | 1 | 225 | 1 | 225 | 8.87e-105 | 302 |
| MS.gene94260.t1 | MTR_7g065720 | 65.929 | 226 | 75 | 2 | 1 | 225 | 1 | 225 | 1.00e-104 | 301 |
| MS.gene94260.t1 | MTR_7g065750 | 63.274 | 226 | 82 | 1 | 1 | 225 | 1 | 226 | 5.20e-100 | 290 |
| MS.gene94260.t1 | MTR_4g019790 | 61.161 | 224 | 86 | 1 | 1 | 224 | 1 | 223 | 1.10e-98 | 286 |
| MS.gene94260.t1 | MTR_7g065630 | 63.839 | 224 | 76 | 2 | 1 | 224 | 19 | 237 | 3.56e-96 | 280 |
| MS.gene94260.t1 | MTR_7g065740 | 59.111 | 225 | 90 | 2 | 1 | 224 | 1 | 224 | 9.72e-96 | 279 |
| MS.gene94260.t1 | MTR_7g065640 | 61.947 | 226 | 66 | 3 | 1 | 225 | 1 | 207 | 1.21e-92 | 270 |
| MS.gene94260.t1 | MTR_4g019780 | 59.361 | 219 | 87 | 2 | 2 | 219 | 3 | 220 | 4.96e-87 | 256 |
| MS.gene94260.t1 | MTR_7g065710 | 62.814 | 199 | 70 | 1 | 8 | 206 | 5 | 199 | 2.21e-84 | 250 |
| MS.gene94260.t1 | MTR_7g065680 | 61.883 | 223 | 80 | 2 | 1 | 223 | 1 | 218 | 3.92e-82 | 244 |
| MS.gene94260.t1 | MTR_7g065700 | 63.592 | 206 | 71 | 1 | 1 | 206 | 1 | 202 | 2.09e-79 | 238 |
| MS.gene94260.t1 | MTR_3g099757 | 47.964 | 221 | 112 | 3 | 5 | 224 | 3 | 221 | 9.98e-59 | 185 |
| MS.gene94260.t1 | MTR_1g090150 | 45.701 | 221 | 114 | 4 | 6 | 223 | 2 | 219 | 5.52e-58 | 183 |
| MS.gene94260.t1 | MTR_1g115195 | 45.495 | 222 | 110 | 3 | 7 | 221 | 3 | 220 | 5.70e-58 | 183 |
| MS.gene94260.t1 | MTR_6g080440 | 45.495 | 222 | 117 | 3 | 7 | 225 | 3 | 223 | 8.22e-58 | 182 |
| MS.gene94260.t1 | MTR_8g087425 | 44.651 | 215 | 117 | 2 | 4 | 217 | 2 | 215 | 5.37e-56 | 178 |
| MS.gene94260.t1 | MTR_8g087410 | 46.396 | 222 | 107 | 4 | 4 | 219 | 3 | 218 | 1.18e-55 | 177 |
| MS.gene94260.t1 | MTR_1g090070 | 44.144 | 222 | 118 | 4 | 7 | 224 | 9 | 228 | 7.54e-53 | 170 |
| MS.gene94260.t1 | MTR_1g090090 | 44.340 | 212 | 111 | 5 | 7 | 214 | 3 | 211 | 3.04e-51 | 166 |
| MS.gene94260.t1 | MTR_5g040430 | 42.009 | 219 | 118 | 4 | 1 | 212 | 1 | 217 | 1.00e-50 | 164 |
| MS.gene94260.t1 | MTR_1g090060 | 42.478 | 226 | 117 | 6 | 7 | 225 | 3 | 222 | 3.18e-49 | 160 |
| MS.gene94260.t1 | MTR_4g059730 | 42.922 | 219 | 110 | 6 | 6 | 216 | 3 | 214 | 9.00e-49 | 159 |
| MS.gene94260.t1 | MTR_8g061950 | 44.344 | 221 | 112 | 7 | 5 | 216 | 3 | 221 | 1.94e-48 | 159 |
| MS.gene94260.t1 | MTR_1g090100 | 42.342 | 222 | 119 | 7 | 8 | 224 | 3 | 220 | 2.47e-48 | 158 |
| MS.gene94260.t1 | MTR_5g037380 | 44.601 | 213 | 106 | 5 | 1 | 204 | 1 | 210 | 3.15e-48 | 158 |
| MS.gene94260.t1 | MTR_2g070200 | 40.476 | 210 | 121 | 3 | 6 | 213 | 3 | 210 | 4.73e-40 | 137 |
| MS.gene94260.t1 | MTR_3g467420 | 45.026 | 191 | 100 | 5 | 16 | 204 | 18 | 205 | 1.46e-39 | 136 |
| MS.gene94260.t1 | MTR_2g070130 | 40.291 | 206 | 108 | 7 | 6 | 204 | 3 | 200 | 2.18e-38 | 132 |
| MS.gene94260.t1 | MTR_4g124130 | 44.560 | 193 | 95 | 7 | 5 | 191 | 2 | 188 | 4.46e-38 | 132 |
| MS.gene94260.t1 | MTR_3g467430 | 41.872 | 203 | 113 | 5 | 4 | 204 | 6 | 205 | 6.09e-38 | 132 |
| MS.gene94260.t1 | MTR_2g070150 | 39.216 | 204 | 113 | 5 | 6 | 204 | 3 | 200 | 7.61e-38 | 131 |
| MS.gene94260.t1 | MTR_2g070120 | 40.212 | 189 | 106 | 5 | 6 | 191 | 3 | 187 | 7.42e-37 | 129 |
| MS.gene94260.t1 | MTR_8g056940 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 2.79e-35 | 125 |
| MS.gene94260.t1 | MTR_2g070140 | 39.153 | 189 | 104 | 5 | 21 | 204 | 2 | 184 | 5.18e-35 | 123 |
| MS.gene94260.t1 | MTR_2g070210 | 40.394 | 203 | 114 | 5 | 6 | 204 | 3 | 202 | 1.48e-34 | 123 |
| MS.gene94260.t1 | MTR_2g070180 | 37.313 | 201 | 121 | 4 | 6 | 204 | 3 | 200 | 1.77e-34 | 122 |
| MS.gene94260.t1 | MTR_2g070070 | 37.561 | 205 | 123 | 4 | 7 | 209 | 4 | 205 | 2.98e-33 | 119 |
| MS.gene94260.t1 | MTR_2g070060 | 38.119 | 202 | 120 | 4 | 7 | 206 | 4 | 202 | 8.23e-33 | 118 |
| MS.gene94260.t1 | MTR_5g076900 | 37.561 | 205 | 121 | 5 | 3 | 204 | 2 | 202 | 1.54e-32 | 117 |
| MS.gene94260.t1 | MTR_0186s0030 | 43.571 | 140 | 77 | 2 | 6 | 144 | 3 | 141 | 6.24e-29 | 106 |
| MS.gene94260.t1 | MTR_2g070110 | 35.577 | 208 | 112 | 5 | 7 | 204 | 4 | 199 | 1.16e-26 | 102 |
| MS.gene94260.t1 | MTR_2g072120 | 48.276 | 58 | 29 | 1 | 51 | 107 | 2 | 59 | 2.51e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94260.t1 | AT2G29420 | 50.455 | 220 | 106 | 3 | 3 | 221 | 5 | 222 | 5.12e-68 | 209 |
| MS.gene94260.t1 | AT3G09270 | 48.000 | 225 | 112 | 5 | 3 | 224 | 2 | 224 | 5.63e-64 | 198 |
| MS.gene94260.t1 | AT2G29490 | 50.000 | 208 | 101 | 3 | 1 | 206 | 1 | 207 | 2.96e-57 | 181 |
| MS.gene94260.t1 | AT2G29450 | 46.847 | 222 | 112 | 3 | 3 | 218 | 2 | 223 | 5.94e-56 | 178 |
| MS.gene94260.t1 | AT2G29480 | 48.077 | 208 | 105 | 3 | 1 | 206 | 1 | 207 | 9.66e-56 | 177 |
| MS.gene94260.t1 | AT2G29460 | 46.698 | 212 | 110 | 3 | 1 | 210 | 1 | 211 | 4.53e-55 | 176 |
| MS.gene94260.t1 | AT2G29470 | 46.890 | 209 | 107 | 4 | 1 | 206 | 1 | 208 | 5.16e-52 | 168 |
| MS.gene94260.t1 | AT1G10370 | 43.396 | 212 | 109 | 6 | 1 | 204 | 1 | 209 | 1.62e-49 | 161 |
| MS.gene94260.t1 | AT1G69930 | 41.364 | 220 | 122 | 3 | 2 | 215 | 7 | 225 | 2.41e-49 | 161 |
| MS.gene94260.t1 | AT2G29440 | 45.673 | 208 | 109 | 4 | 1 | 206 | 1 | 206 | 5.76e-49 | 160 |
| MS.gene94260.t1 | AT1G59700 | 45.887 | 231 | 111 | 8 | 5 | 223 | 4 | 232 | 6.11e-48 | 157 |
| MS.gene94260.t1 | AT1G59670 | 44.498 | 209 | 106 | 5 | 5 | 204 | 4 | 211 | 1.93e-46 | 154 |
| MS.gene94260.t1 | AT5G62480 | 42.081 | 221 | 114 | 5 | 8 | 215 | 9 | 228 | 4.82e-45 | 150 |
| MS.gene94260.t1 | AT1G69920 | 39.450 | 218 | 122 | 5 | 1 | 208 | 26 | 243 | 8.33e-44 | 147 |
| MS.gene94260.t1 | AT1G10360 | 38.073 | 218 | 125 | 5 | 6 | 215 | 4 | 219 | 1.23e-43 | 146 |
| MS.gene94260.t1 | AT1G27130 | 38.222 | 225 | 129 | 5 | 1 | 217 | 1 | 223 | 1.90e-43 | 146 |
| MS.gene94260.t1 | AT1G78370 | 42.932 | 191 | 104 | 4 | 16 | 204 | 13 | 200 | 7.26e-43 | 144 |
| MS.gene94260.t1 | AT1G78380 | 43.000 | 200 | 109 | 4 | 7 | 204 | 4 | 200 | 2.16e-42 | 143 |
| MS.gene94260.t1 | AT1G74590 | 38.095 | 231 | 134 | 5 | 1 | 224 | 1 | 229 | 3.38e-42 | 143 |
| MS.gene94260.t1 | AT1G78320 | 43.069 | 202 | 110 | 4 | 5 | 204 | 2 | 200 | 5.96e-41 | 139 |
| MS.gene94260.t1 | AT1G78340 | 43.678 | 174 | 95 | 3 | 6 | 177 | 3 | 175 | 3.88e-40 | 137 |
| MS.gene94260.t1 | AT1G53680 | 39.614 | 207 | 120 | 4 | 1 | 204 | 1 | 205 | 9.10e-38 | 131 |
| MS.gene94260.t1 | AT1G27140 | 36.150 | 213 | 126 | 4 | 1 | 204 | 1 | 212 | 9.43e-37 | 129 |
| MS.gene94260.t1 | AT1G17170 | 38.356 | 219 | 128 | 5 | 6 | 222 | 3 | 216 | 4.85e-36 | 127 |
| MS.gene94260.t1 | AT1G17180 | 39.303 | 201 | 117 | 4 | 6 | 204 | 3 | 200 | 1.49e-34 | 123 |
| MS.gene94260.t1 | AT1G17190 | 40.526 | 190 | 104 | 5 | 6 | 191 | 4 | 188 | 4.10e-34 | 122 |
| MS.gene94260.t1 | AT3G43800 | 36.967 | 211 | 124 | 6 | 4 | 208 | 2 | 209 | 3.75e-32 | 117 |
| MS.gene94260.t1 | AT1G78360 | 38.806 | 201 | 117 | 5 | 7 | 204 | 4 | 201 | 1.52e-31 | 115 |
| MS.gene94260.t1 | AT5G62480 | 33.636 | 220 | 108 | 5 | 8 | 215 | 9 | 202 | 1.84e-27 | 104 |
| MS.gene94260.t1 | AT5G62480 | 33.636 | 220 | 107 | 5 | 8 | 215 | 9 | 201 | 3.70e-27 | 103 |
| MS.gene94260.t1 | AT1G78320 | 35.323 | 201 | 100 | 4 | 5 | 204 | 2 | 173 | 2.47e-24 | 95.9 |
| MS.gene94260.t1 | AT2G02390 | 28.037 | 214 | 135 | 5 | 3 | 204 | 4 | 210 | 5.73e-13 | 66.2 |
| MS.gene94260.t1 | AT2G02390 | 26.754 | 228 | 127 | 6 | 3 | 204 | 4 | 217 | 6.39e-12 | 63.2 |
| MS.gene94260.t1 | AT2G02380 | 26.415 | 212 | 137 | 5 | 5 | 204 | 9 | 213 | 2.23e-11 | 61.6 |
Find 46 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCACGTTTC+TGG | 0.188650 | 7.3:+40659511 | MS.gene94260:CDS |
| CAAGGATCAGAAGGCAATAT+TGG | 0.248748 | 7.3:-40659486 | None:intergenic |
| ATTGGCCTTGTTGACATTAC+TGG | 0.271417 | 7.3:+40660318 | MS.gene94260:CDS |
| ACAGGAACTTTCTTATAAAC+AGG | 0.283283 | 7.3:-40659387 | None:intergenic |
| GAGCTCAAAGACAAGTTCTT+TGG | 0.355329 | 7.3:+40660285 | MS.gene94260:CDS |
| TGGCTCCAATTGAATAACTT+TGG | 0.369360 | 7.3:-40660414 | None:intergenic |
| GAGAAGGGTATTGAGGAAAC+AGG | 0.385822 | 7.3:+40660237 | MS.gene94260:CDS |
| TACTTTATCATCTATGAACT+TGG | 0.387024 | 7.3:-40659535 | None:intergenic |
| CCTATTACTTCTTCTACAAT+GGG | 0.398317 | 7.3:-40660363 | None:intergenic |
| TCCTATTACTTCTTCTACAA+TGG | 0.401929 | 7.3:-40660364 | None:intergenic |
| ATAGTCGATGGCATCAAATA+AGG | 0.406543 | 7.3:+40659227 | None:intergenic |
| CCCATTGTAGAAGAAGTAAT+AGG | 0.407102 | 7.3:+40660363 | MS.gene94260:CDS |
| AATTTCCAAAGTTATTCAAT+TGG | 0.415545 | 7.3:+40660409 | MS.gene94260:CDS |
| TTGGGTGGTTATTGAAGTCT+TGG | 0.422102 | 7.3:-40660434 | None:intergenic |
| TCCTAGACTAGAAACCCTTT+TGG | 0.422199 | 7.3:+40660476 | MS.gene94260:CDS |
| ATCTCCACCCTGCACACAAA+TGG | 0.430527 | 7.3:-40659282 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.3:-40659429 | None:intergenic |
| TTCTTTGGTGGAGAAGAGAT+TGG | 0.437865 | 7.3:+40660300 | MS.gene94260:CDS |
| GAGATCTTTCGAAGGCCAAA+AGG | 0.460962 | 7.3:-40660491 | None:intergenic |
| AGAGATTGAGAAGGGTATTG+AGG | 0.468601 | 7.3:+40660230 | MS.gene94260:CDS |
| CTCAAAGACAAGTTCTTTGG+TGG | 0.495298 | 7.3:+40660288 | MS.gene94260:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.3:+40659454 | MS.gene94260:CDS |
| AGGAGTTGAATACAAATATG+AGG | 0.510242 | 7.3:+40659320 | MS.gene94260:CDS |
| TGATCCTTGTAAAAGAGCCT+TGG | 0.517207 | 7.3:+40659500 | MS.gene94260:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.3:-40659405 | None:intergenic |
| AGTGGCTCTTCAATTTCTTG+AGG | 0.533010 | 7.3:+40660260 | MS.gene94260:CDS |
| GCCAAAAGGGTTTCTAGTCT+AGG | 0.536473 | 7.3:-40660477 | None:intergenic |
| GATGAGAAAGAGATTGAGAA+GGG | 0.537394 | 7.3:+40660222 | MS.gene94260:CDS |
| AGATCTTTCGAAGGCCAAAA+GGG | 0.542519 | 7.3:-40660490 | None:intergenic |
| AGGCAAGTCCATTTGTGTGC+AGG | 0.542935 | 7.3:+40659274 | MS.gene94260:CDS |
| CAGGAACTTTCTTATAAACA+GGG | 0.564477 | 7.3:-40659386 | None:intergenic |
| GGCAAGTCCATTTGTGTGCA+GGG | 0.572089 | 7.3:+40659275 | MS.gene94260:CDS |
| TGATGAGAAAGAGATTGAGA+AGG | 0.573160 | 7.3:+40660221 | MS.gene94260:CDS |
| GAGATTGCTCTAAAACTGAA+AGG | 0.585304 | 7.3:+40659300 | MS.gene94260:CDS |
| AATCTCTTTCTCATCAAGAG+TGG | 0.590956 | 7.3:-40660214 | None:intergenic |
| GATGGCATCAAATAAGGAAG+AGG | 0.597653 | 7.3:+40659233 | None:intergenic |
| CAATATACTCAAGAATCACA+AGG | 0.601780 | 7.3:-40659443 | None:intergenic |
| CAATAACCACCCAATTGTCA+AGG | 0.611678 | 7.3:+40660443 | MS.gene94260:CDS |
| TTCAGAACGAGATCTTTCGA+AGG | 0.621786 | 7.3:-40660499 | None:intergenic |
| AAAAGGGTTTCTAGTCTAGG+AGG | 0.639156 | 7.3:-40660474 | None:intergenic |
| GGGTATTGAGGAAACAGGAG+TGG | 0.669933 | 7.3:+40660242 | MS.gene94260:CDS |
| AATATACTCAAGAATCACAA+GGG | 0.678725 | 7.3:-40659442 | None:intergenic |
| CTTGGACCAGAAACGTGCCA+AGG | 0.686787 | 7.3:-40659517 | None:intergenic |
| AGACTCCAGTAATGTCAACA+AGG | 0.694962 | 7.3:-40660323 | None:intergenic |
| CTATTACTTCTTCTACAATG+GGG | 0.725460 | 7.3:-40660362 | None:intergenic |
| AAGTCCATTTGTGTGCAGGG+TGG | 0.735254 | 7.3:+40659278 | MS.gene94260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGATTAAAATATATTTAA+GGG | - | chr7.3:40659851-40659870 | None:intergenic | 10.0% |
| !! | TTATTTAACCAAAAAAATTA+TGG | - | chr7.3:40659819-40659838 | None:intergenic | 10.0% |
| !! | AATCAAACATTTGTATATTT+AGG | + | chr7.3:40660036-40660055 | MS.gene94260:intron | 15.0% |
| !! | GAAGGATTAAAATATATTTA+AGG | - | chr7.3:40659852-40659871 | None:intergenic | 15.0% |
| !!! | AATTTTTCATTCATGAAATT+AGG | + | chr7.3:40659904-40659923 | MS.gene94260:intron | 15.0% |
| !!! | ATGAATGAAAAATTTTAGAA+GGG | - | chr7.3:40659898-40659917 | None:intergenic | 15.0% |
| !!! | CCTCTAAAAAAATAAAAATA+GGG | - | chr7.3:40660082-40660101 | None:intergenic | 15.0% |
| !!! | TAAAATATTTCTTAGACTTT+TGG | + | chr7.3:40659872-40659891 | MS.gene94260:intron | 15.0% |
| !!! | TCCTCTAAAAAAATAAAAAT+AGG | - | chr7.3:40660083-40660102 | None:intergenic | 15.0% |
| !!! | TTATTTTAACTAAAAACACA+CGG | + | chr7.3:40659702-40659721 | MS.gene94260:intron | 15.0% |
| !! | AATAGGGTTAAATAAGTAAA+TGG | - | chr7.3:40660066-40660085 | None:intergenic | 20.0% |
| !! | AATTTCCAAAGTTATTCAAT+TGG | + | chr7.3:40660409-40660428 | MS.gene94260:CDS | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.3:40659408-40659427 | None:intergenic | 20.0% |
| !!! | AAAAGCCTAAGAAATATTTT+AGG | + | chr7.3:40660005-40660024 | MS.gene94260:intron | 20.0% |
| !!! | AGTCTAAGAAATATTTTAGA+AGG | - | chr7.3:40659870-40659889 | None:intergenic | 20.0% |
| !!! | CATGAATGAAAAATTTTAGA+AGG | - | chr7.3:40659899-40659918 | None:intergenic | 20.0% |
| !!! | CCCTATTTTTATTTTTTTAG+AGG | + | chr7.3:40660079-40660098 | MS.gene94260:intron | 20.0% |
| ! | AATATACTCAAGAATCACAA+GGG | - | chr7.3:40659445-40659464 | None:intergenic | 25.0% |
| ! | TACTTTATCATCTATGAACT+TGG | - | chr7.3:40659538-40659557 | None:intergenic | 25.0% |
| !! | AATTTTACAGCACTAAAACT+TGG | + | chr7.3:40659792-40659811 | MS.gene94260:intron | 25.0% |
| !!! | AACTTGGTCCATAATTTTTT+TGG | + | chr7.3:40659808-40659827 | MS.gene94260:intron | 25.0% |
| ACAGGAACTTTCTTATAAAC+AGG | - | chr7.3:40659390-40659409 | None:intergenic | 30.0% | |
| AGGAGTTGAATACAAATATG+AGG | + | chr7.3:40659320-40659339 | MS.gene94260:CDS | 30.0% | |
| CAATATACTCAAGAATCACA+AGG | - | chr7.3:40659446-40659465 | None:intergenic | 30.0% | |
| CAGGAACTTTCTTATAAACA+GGG | - | chr7.3:40659389-40659408 | None:intergenic | 30.0% | |
| CCTATTACTTCTTCTACAAT+GGG | - | chr7.3:40660366-40660385 | None:intergenic | 30.0% | |
| CTATTACTTCTTCTACAATG+GGG | - | chr7.3:40660365-40660384 | None:intergenic | 30.0% | |
| GATGTTCATCTCAAATCAAA+TGG | - | chr7.3:40659741-40659760 | None:intergenic | 30.0% | |
| GTCCTCCTAAAATATTTCTT+AGG | - | chr7.3:40660013-40660032 | None:intergenic | 30.0% | |
| TCCTATTACTTCTTCTACAA+TGG | - | chr7.3:40660367-40660386 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.3:40659454-40659473 | MS.gene94260:CDS | 30.0% | |
| ! | GCAAATTTTCCTTGACAATT+GGG | - | chr7.3:40660455-40660474 | None:intergenic | 30.0% |
| !! | AGCCTAAGAAATATTTTAGG+AGG | + | chr7.3:40660008-40660027 | MS.gene94260:intron | 30.0% |
| !!! | CACTATTTTTTTAACAGCAG+AGG | + | chr7.3:40659949-40659968 | MS.gene94260:intron | 30.0% |
| !!! | CATGGACGAAATTTTTTTGA+GGG | + | chr7.3:40659979-40659998 | MS.gene94260:intron | 30.0% |
| !!! | TCATGGACGAAATTTTTTTG+AGG | + | chr7.3:40659978-40659997 | MS.gene94260:intron | 30.0% |
| AATCTCTTTCTCATCAAGAG+TGG | - | chr7.3:40660217-40660236 | None:intergenic | 35.0% | |
| ACCTTTCAATTGTGATCAGA+CGG | - | chr7.3:40659677-40659696 | None:intergenic | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.3:40659432-40659451 | None:intergenic | 35.0% | |
| CCCATTGTAGAAGAAGTAAT+AGG | + | chr7.3:40660363-40660382 | MS.gene94260:CDS | 35.0% | |
| GATGAGAAAGAGATTGAGAA+GGG | + | chr7.3:40660222-40660241 | MS.gene94260:CDS | 35.0% | |
| TGATGAGAAAGAGATTGAGA+AGG | + | chr7.3:40660221-40660240 | MS.gene94260:CDS | 35.0% | |
| TGGCTCCAATTGAATAACTT+TGG | - | chr7.3:40660417-40660436 | None:intergenic | 35.0% | |
| ! | AATTTTCCTTGACAATTGGG+TGG | - | chr7.3:40660452-40660471 | None:intergenic | 35.0% |
| ! | ACCACTAGTCTCACAAATTA+AGG | - | chr7.3:40660170-40660189 | None:intergenic | 35.0% |
| ! | GGCAAATTTTCCTTGACAAT+TGG | - | chr7.3:40660456-40660475 | None:intergenic | 35.0% |
| ! | TAATTTGTGAGACTAGTGGT+TGG | + | chr7.3:40660170-40660189 | MS.gene94260:intron | 35.0% |
| ! | TCACACACACACACAATTTT+TGG | + | chr7.3:40659607-40659626 | MS.gene94260:intron | 35.0% |
| !! | ACCTTAATTTGTGAGACTAG+TGG | + | chr7.3:40660166-40660185 | MS.gene94260:intron | 35.0% |
| !! | GAGATTGCTCTAAAACTGAA+AGG | + | chr7.3:40659300-40659319 | MS.gene94260:CDS | 35.0% |
| !!! | ACACACACAATTTTTGGAAC+AGG | + | chr7.3:40659613-40659632 | MS.gene94260:intron | 35.0% |
| AACAGCAGAGGCTAATTTCA+TGG | + | chr7.3:40659961-40659980 | MS.gene94260:intron | 40.0% | |
| AATTAGCACACAGTTTCACG+CGG | - | chr7.3:40659776-40659795 | None:intergenic | 40.0% | |
| AGACTCCAGTAATGTCAACA+AGG | - | chr7.3:40660326-40660345 | None:intergenic | 40.0% | |
| AGATCTTTCGAAGGCCAAAA+GGG | - | chr7.3:40660493-40660512 | None:intergenic | 40.0% | |
| AGTGGCTCTTCAATTTCTTG+AGG | + | chr7.3:40660260-40660279 | MS.gene94260:CDS | 40.0% | |
| ATTGTGTGTGTGTGTGAAGT+TGG | - | chr7.3:40659604-40659623 | None:intergenic | 40.0% | |
| CAAGGATCAGAAGGCAATAT+TGG | - | chr7.3:40659489-40659508 | None:intergenic | 40.0% | |
| CAATAACCACCCAATTGTCA+AGG | + | chr7.3:40660443-40660462 | MS.gene94260:CDS | 40.0% | |
| CTCAAAGACAAGTTCTTTGG+TGG | + | chr7.3:40660288-40660307 | MS.gene94260:CDS | 40.0% | |
| GAGCTCAAAGACAAGTTCTT+TGG | + | chr7.3:40660285-40660304 | MS.gene94260:CDS | 40.0% | |
| GCAAAATTAGAGAGAGAGAG+AGG | - | chr7.3:40659565-40659584 | None:intergenic | 40.0% | |
| TGATCCTTGTAAAAGAGCCT+TGG | + | chr7.3:40659500-40659519 | MS.gene94260:CDS | 40.0% | |
| TTCAGAACGAGATCTTTCGA+AGG | - | chr7.3:40660502-40660521 | None:intergenic | 40.0% | |
| TTCTTTGGTGGAGAAGAGAT+TGG | + | chr7.3:40660300-40660319 | MS.gene94260:CDS | 40.0% | |
| TTGGGTGGTTATTGAAGTCT+TGG | - | chr7.3:40660437-40660456 | None:intergenic | 40.0% | |
| ! | AAGGAAGAGGTGAAGCTTTT+TGG | + | chr7.3:40659246-40659265 | MS.gene94260:CDS | 40.0% |
| ! | CTGGAGTCTTCGTATCTTTT+TGG | + | chr7.3:40660337-40660356 | MS.gene94260:CDS | 40.0% |
| ! | GCTCTTTTACAAGGATCAGA+AGG | - | chr7.3:40659498-40659517 | None:intergenic | 40.0% |
| ! | TCCTAGACTAGAAACCCTTT+TGG | + | chr7.3:40660476-40660495 | MS.gene94260:CDS | 40.0% |
| !! | AAAAGGGTTTCTAGTCTAGG+AGG | - | chr7.3:40660477-40660496 | None:intergenic | 40.0% |
| !! | AGAGATTGAGAAGGGTATTG+AGG | + | chr7.3:40660230-40660249 | MS.gene94260:CDS | 40.0% |
| !! | ATTGGCCTTGTTGACATTAC+TGG | + | chr7.3:40660318-40660337 | MS.gene94260:CDS | 40.0% |
| !!! | GGTGAAGCTTTTTGGAATGA+AGG | + | chr7.3:40659254-40659273 | MS.gene94260:CDS | 40.0% |
| GAGATCTTTCGAAGGCCAAA+AGG | - | chr7.3:40660494-40660513 | None:intergenic | 45.0% | |
| GCCGTCTGATCACAATTGAA+AGG | + | chr7.3:40659673-40659692 | MS.gene94260:intron | 45.0% | |
| !! | GAGAAGGGTATTGAGGAAAC+AGG | + | chr7.3:40660237-40660256 | MS.gene94260:CDS | 45.0% |
| !! | GCCAAAAGGGTTTCTAGTCT+AGG | - | chr7.3:40660480-40660499 | None:intergenic | 45.0% |
| AAAGAGCCTTGGCACGTTTC+TGG | + | chr7.3:40659511-40659530 | MS.gene94260:CDS | 50.0% | |
| AAGTCCATTTGTGTGCAGGG+TGG | + | chr7.3:40659278-40659297 | MS.gene94260:CDS | 50.0% | |
| AGGATTCCTGCTGTTACAGC+AGG | + | chr7.3:40659633-40659652 | MS.gene94260:intron | 50.0% | |
| AGGCAAGTCCATTTGTGTGC+AGG | + | chr7.3:40659274-40659293 | MS.gene94260:CDS | 50.0% | |
| ATCTCCACCCTGCACACAAA+TGG | - | chr7.3:40659285-40659304 | None:intergenic | 50.0% | |
| GGCAAGTCCATTTGTGTGCA+GGG | + | chr7.3:40659275-40659294 | MS.gene94260:CDS | 50.0% | |
| ! | CGTGCCAAGGCTCTTTTACA+AGG | - | chr7.3:40659507-40659526 | None:intergenic | 50.0% |
| !! | GGGTATTGAGGAAACAGGAG+TGG | + | chr7.3:40660242-40660261 | MS.gene94260:CDS | 50.0% |
| ACAGCACCTGCTGTAACAGC+AGG | - | chr7.3:40659642-40659661 | None:intergenic | 55.0% | |
| CTTGGACCAGAAACGTGCCA+AGG | - | chr7.3:40659520-40659539 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40659234 | 40660542 | 40659234 | ID=MS.gene94260 |
| chr7.3 | mRNA | 40659234 | 40660542 | 40659234 | ID=MS.gene94260.t1;Parent=MS.gene94260 |
| chr7.3 | exon | 40659234 | 40659554 | 40659234 | ID=MS.gene94260.t1.exon1;Parent=MS.gene94260.t1 |
| chr7.3 | CDS | 40659234 | 40659554 | 40659234 | ID=cds.MS.gene94260.t1;Parent=MS.gene94260.t1 |
| chr7.3 | exon | 40660186 | 40660542 | 40660186 | ID=MS.gene94260.t1.exon2;Parent=MS.gene94260.t1 |
| chr7.3 | CDS | 40660186 | 40660542 | 40660186 | ID=cds.MS.gene94260.t1;Parent=MS.gene94260.t1 |
| Gene Sequence |
| Protein sequence |
