Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009610.01.T01 | XP_013464283.2 | 80.272 | 294 | 8 | 2 | 1 | 261 | 1 | 277 | 3.10E-139 | 402 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009610.01.T01 | Q5RAP0 | 39.216 | 102 | 62 | 0 | 9 | 110 | 13 | 114 | 4.12E-15 | 78.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009610.01.T01 | A0A396JBV0 | 80.272 | 294 | 8 | 2 | 1 | 261 | 1 | 277 | 1.48e-139 | 402 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048035.01 | MsG0280009610.01 | 0.824501 | 7.801125e-54 | 6.922277e-51 |
MsG0080048177.01 | MsG0280009610.01 | 0.833585 | 4.902250e-56 | 5.670299e-53 |
MsG0080048178.01 | MsG0280009610.01 | 0.828311 | 9.647601e-55 | 9.553677e-52 |
MsG0080048482.01 | MsG0280009610.01 | 0.800744 | 1.248192e-48 | 5.857180e-46 |
MsG0080048915.01 | MsG0280009610.01 | 0.802942 | 4.414520e-49 | 2.190335e-46 |
MsG0180000222.01 | MsG0280009610.01 | 0.827797 | 1.282743e-54 | 1.251270e-51 |
MsG0180001053.01 | MsG0280009610.01 | 0.811803 | 5.831668e-51 | 3.644735e-48 |
MsG0180002912.01 | MsG0280009610.01 | 0.829238 | 5.756587e-55 | 5.857697e-52 |
MsG0180003241.01 | MsG0280009610.01 | 0.852785 | 3.675715e-61 | 7.768348e-58 |
MsG0180003948.01 | MsG0280009610.01 | 0.807646 | 4.566244e-50 | 2.557028e-47 |
MsG0180004060.01 | MsG0280009610.01 | 0.808527 | 2.964195e-50 | 1.698833e-47 |
MsG0180004222.01 | MsG0280009610.01 | 0.805684 | 1.185289e-49 | 6.310916e-47 |
MsG0180004388.01 | MsG0280009610.01 | 0.819323 | 1.233816e-52 | 9.463381e-50 |
MsG0180004762.01 | MsG0280009610.01 | 0.846330 | 2.325046e-59 | 3.987443e-56 |
MsG0180004793.01 | MsG0280009610.01 | 0.835783 | 1.372552e-56 | 1.695833e-53 |
MsG0180005125.01 | MsG0280009610.01 | 0.811578 | 6.527531e-51 | 4.055480e-48 |
MsG0180005172.01 | MsG0280009610.01 | 0.834654 | 2.645553e-56 | 3.159682e-53 |
MsG0180005869.01 | MsG0280009610.01 | 0.800754 | 1.242213e-48 | 5.830560e-46 |
MsG0180005944.01 | MsG0280009610.01 | 0.803794 | 2.941035e-49 | 1.491525e-46 |
MsG0180005949.01 | MsG0280009610.01 | 0.805188 | 1.506167e-49 | 7.917329e-47 |
MsG0180006012.01 | MsG0280009610.01 | 0.822791 | 1.960903e-53 | 1.657836e-50 |
MsG0180006023.01 | MsG0280009610.01 | 0.808893 | 2.475451e-50 | 1.432325e-47 |
MsG0180006106.01 | MsG0280009610.01 | 0.806140 | 9.507136e-50 | 5.121202e-47 |
MsG0180006235.01 | MsG0280009610.01 | 0.809722 | 1.644095e-50 | 9.726506e-48 |
MsG0280006586.01 | MsG0280009610.01 | 0.821442 | 4.028086e-53 | 3.277465e-50 |
MsG0280006936.01 | MsG0280009610.01 | 0.826181 | 3.122627e-54 | 2.907198e-51 |
MsG0280007272.01 | MsG0280009610.01 | 0.803293 | 3.734985e-49 | 1.869913e-46 |
MsG0280007481.01 | MsG0280009610.01 | 0.866201 | 3.389427e-65 | 1.132749e-61 |
MsG0280008220.01 | MsG0280009610.01 | 0.859401 | 4.242064e-63 | 1.119024e-59 |
MsG0280008270.01 | MsG0280009610.01 | 0.816278 | 6.004392e-52 | 4.236292e-49 |
MsG0280008907.01 | MsG0280009610.01 | 0.814616 | 1.406783e-51 | 9.484947e-49 |
MsG0280009610.01 | MsG0280010459.01 | 0.832502 | 9.114242e-56 | 1.020672e-52 |
MsG0280009610.01 | MsG0280010614.01 | 0.839709 | 1.347113e-57 | 1.875810e-54 |
MsG0280009610.01 | MsG0280011024.01 | 0.804798 | 1.817325e-49 | 9.457943e-47 |
MsG0280009610.01 | MsG0280011105.01 | 0.855748 | 5.123738e-62 | 1.195164e-58 |
MsG0280009610.01 | MsG0280011152.01 | 0.821376 | 4.173054e-53 | 3.389066e-50 |
MsG0280009610.01 | MsG0280011293.01 | 0.803082 | 4.131437e-49 | 2.057138e-46 |
MsG0280009610.01 | MsG0280011473.01 | 0.803184 | 3.934800e-49 | 1.964479e-46 |
MsG0280009610.01 | MsG0380011754.01 | 0.834071 | 3.704251e-56 | 4.347607e-53 |
MsG0280009610.01 | MsG0380012033.01 | 0.804122 | 2.513677e-49 | 1.285593e-46 |
MsG0280009610.01 | MsG0380014163.01 | 0.827536 | 1.481880e-54 | 1.434614e-51 |
MsG0280009610.01 | MsG0380014680.01 | 0.805221 | 1.481876e-49 | 7.796275e-47 |
MsG0280009610.01 | MsG0380014913.01 | 0.843119 | 1.704950e-58 | 2.640537e-55 |
MsG0280009610.01 | MsG0380015878.01 | 0.825074 | 5.715311e-54 | 5.155942e-51 |
MsG0280009610.01 | MsG0380015931.01 | 0.824656 | 7.171309e-54 | 6.392852e-51 |
MsG0280009610.01 | MsG0380015986.01 | 0.848978 | 4.341499e-60 | 8.108747e-57 |
MsG0280009610.01 | MsG0380016227.01 | 0.823514 | 1.329242e-53 | 1.147001e-50 |
MsG0280009610.01 | MsG0380016595.01 | 0.806618 | 7.538822e-50 | 4.110513e-47 |
MsG0280009610.01 | MsG0380016640.01 | 0.812440 | 4.234877e-51 | 2.692991e-48 |
MsG0280009610.01 | MsG0380016705.01 | 0.826909 | 2.093829e-54 | 1.990508e-51 |
MsG0280009610.01 | MsG0380017158.01 | 0.869877 | 2.227416e-66 | 8.491947e-63 |
MsG0280009610.01 | MsG0380017940.01 | 0.815736 | 7.936379e-52 | 5.516950e-49 |
MsG0280009610.01 | MsG0480018635.01 | 0.809598 | 1.748632e-50 | 1.031088e-47 |
MsG0280009610.01 | MsG0480018970.01 | 0.811564 | 6.574180e-51 | 4.082985e-48 |
MsG0280009610.01 | MsG0480019871.01 | 0.810752 | 9.857423e-51 | 5.992157e-48 |
MsG0280009610.01 | MsG0480019880.01 | 0.800733 | 1.254815e-48 | 5.886597e-46 |
MsG0280009610.01 | MsG0480020242.01 | 0.821124 | 4.769820e-53 | 3.846917e-50 |
MsG0280009610.01 | MsG0480020444.01 | 0.802457 | 5.559713e-49 | 2.724760e-46 |
MsG0280009610.01 | MsG0480020445.01 | 0.821758 | 3.405735e-53 | 2.795737e-50 |
MsG0280009610.01 | MsG0480021642.01 | 0.815301 | 9.916912e-52 | 6.811395e-49 |
MsG0280009610.01 | MsG0480022479.01 | 0.848360 | 6.439709e-60 | 1.178843e-56 |
MsG0280009610.01 | MsG0480022480.01 | 0.832475 | 9.256186e-56 | 1.035717e-52 |
MsG0280009610.01 | MsG0480022486.01 | 0.835655 | 1.478525e-56 | 1.819782e-53 |
MsG0280009610.01 | MsG0480022597.01 | 0.842738 | 2.153206e-58 | 3.295063e-55 |
MsG0280009610.01 | MsG0480022598.01 | 0.832120 | 1.133316e-55 | 1.254789e-52 |
MsG0280009610.01 | MsG0480022661.01 | 0.801976 | 6.983507e-49 | 3.380656e-46 |
MsG0280009610.01 | MsG0480023224.01 | 0.801216 | 9.995585e-49 | 4.746957e-46 |
MsG0280009610.01 | MsG0480023245.01 | 0.823657 | 1.231123e-53 | 1.066713e-50 |
MsG0280009610.01 | MsG0480023490.01 | 0.843750 | 1.156059e-58 | 1.826572e-55 |
MsG0280009610.01 | MsG0480023903.01 | 0.856075 | 4.109759e-62 | 9.691243e-59 |
MsG0280009610.01 | MsG0580024205.01 | 0.825741 | 3.974103e-54 | 3.653821e-51 |
MsG0280009610.01 | MsG0580025236.01 | 0.812990 | 3.209345e-51 | 2.070501e-48 |
MsG0280009610.01 | MsG0580025907.01 | 0.811448 | 6.965242e-51 | 4.312821e-48 |
MsG0280009610.01 | MsG0580026595.01 | 0.805610 | 1.228251e-49 | 6.526873e-47 |
MsG0280009610.01 | MsG0580027129.01 | 0.868678 | 5.461469e-66 | 1.992903e-62 |
MsG0280009610.01 | MsG0580027345.01 | 0.818733 | 1.680336e-52 | 1.268053e-49 |
MsG0280009610.01 | MsG0580027847.01 | 0.824030 | 1.006533e-53 | 8.812176e-51 |
MsG0280009610.01 | MsG0580028453.01 | 0.825635 | 4.208996e-54 | 3.858080e-51 |
MsG0280009610.01 | MsG0580028605.01 | 0.806347 | 8.598248e-50 | 4.655953e-47 |
MsG0280009610.01 | MsG0580028980.01 | 0.827754 | 1.313348e-54 | 1.279574e-51 |
MsG0280009610.01 | MsG0580029798.01 | 0.810540 | 1.095547e-50 | 6.621575e-48 |
MsG0280009610.01 | MsG0580029901.01 | 0.810213 | 1.289234e-50 | 7.724978e-48 |
MsG0280009610.01 | MsG0580029906.01 | 0.839047 | 2.000937e-57 | 2.730156e-54 |
MsG0280009610.01 | MsG0680031719.01 | 0.817627 | 2.989372e-52 | 2.188305e-49 |
MsG0280009610.01 | MsG0680034450.01 | 0.843362 | 1.468483e-58 | 2.292222e-55 |
MsG0280009610.01 | MsG0680035656.01 | 0.862244 | 5.813257e-64 | 1.691033e-60 |
MsG0280009610.01 | MsG0780036630.01 | 0.806079 | 9.788590e-50 | 5.264628e-47 |
MsG0280009610.01 | MsG0780038113.01 | 0.811032 | 8.575010e-51 | 5.251694e-48 |
MsG0280009610.01 | MsG0780038117.01 | 0.810822 | 9.521575e-51 | 5.798708e-48 |
MsG0280009610.01 | MsG0780038145.01 | 0.802648 | 5.078548e-49 | 2.500986e-46 |
MsG0280009610.01 | MsG0780038444.01 | 0.825184 | 5.383491e-54 | 4.872011e-51 |
MsG0280009610.01 | MsG0780038829.01 | 0.837652 | 4.579634e-57 | 5.989046e-54 |
MsG0280009610.01 | MsG0780039966.01 | 0.813970 | 1.954919e-51 | 1.295167e-48 |
MsG0280009610.01 | MsG0780040488.01 | 0.808040 | 3.764813e-50 | 2.130153e-47 |
MsG0280009610.01 | MsG0780040505.01 | 0.836520 | 8.920602e-57 | 1.126871e-53 |
MsG0280009610.01 | MsG0780040516.01 | 0.854835 | 9.448055e-62 | 2.138008e-58 |
MsG0280009610.01 | MsG0780040679.01 | 0.850045 | 2.188531e-60 | 4.232579e-57 |
MsG0280009610.01 | MsG0780041376.01 | 0.817777 | 2.765868e-52 | 2.033083e-49 |
MsG0280009610.01 | MsG0780041485.01 | 0.815573 | 8.626843e-52 | 5.969931e-49 |
MsG0280009610.01 | MsG0780041777.01 | 0.813109 | 3.023112e-51 | 1.956436e-48 |
MsG0280009610.01 | MsG0880041985.01 | 0.813738 | 2.198859e-51 | 1.447700e-48 |
MsG0280009610.01 | MsG0880042811.01 | 0.801450 | 8.953065e-49 | 4.276956e-46 |
MsG0280009610.01 | MsG0880042843.01 | 0.838308 | 3.107339e-57 | 4.145067e-54 |
MsG0280009610.01 | MsG0880042967.01 | 0.838308 | 3.106378e-57 | 4.143833e-54 |
MsG0280009610.01 | MsG0880043001.01 | 0.803640 | 3.165153e-49 | 1.598843e-46 |
MsG0280009610.01 | MsG0880043489.01 | 0.810613 | 1.056462e-50 | 6.398086e-48 |
MsG0280009610.01 | MsG0880043921.01 | 0.804933 | 1.702754e-49 | 8.892957e-47 |
MsG0280009610.01 | MsG0880045518.01 | 0.810591 | 1.068448e-50 | 6.466690e-48 |
MsG0280009610.01 | MsG0880045827.01 | 0.807512 | 4.874200e-50 | 2.720185e-47 |
MsG0280009610.01 | MsG0880045914.01 | 0.831479 | 1.630672e-55 | 1.771801e-52 |
MsG0280009610.01 | MsG0880046244.01 | 0.837525 | 4.936914e-57 | 6.430656e-54 |
MsG0280009610.01 | MsG0880046329.01 | 0.803868 | 2.838349e-49 | 1.442280e-46 |
MsG0280009610.01 | MsG0880046467.01 | 0.840079 | 1.079325e-57 | 1.520574e-54 |
MsG0280009610.01 | MsG0880046586.01 | 0.845000 | 5.333893e-59 | 8.765346e-56 |
MsG0280009610.01 | MsG0880046642.01 | 0.865932 | 4.125147e-65 | 1.365743e-61 |
MsG0280009610.01 | MsG0880046669.01 | 0.813888 | 2.037175e-51 | 1.346739e-48 |
MsG0280009610.01 | MsG0880046731.01 | 0.832189 | 1.089365e-55 | 1.208613e-52 |
MsG0280009610.01 | MsG0880047337.01 | 0.821692 | 3.527884e-53 | 2.890737e-50 |
MsG0280009610.01 | MsG0880047497.01 | 0.840828 | 6.871089e-58 | 9.907137e-55 |
MsG0280009610.01 | MsG0880047590.01 | 0.815217 | 1.035118e-51 | 7.092947e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009610.01.T01 | MTR_2g067870 | 99.174 | 121 | 1 | 0 | 1 | 121 | 1 | 121 | 9.06e-86 | 251 |
MsG0280009610.01.T01 | MTR_2g067860 | 75.000 | 164 | 8 | 1 | 131 | 261 | 4 | 167 | 7.67e-57 | 179 |
MsG0280009610.01.T01 | MTR_7g059150 | 34.314 | 102 | 63 | 1 | 9 | 106 | 102 | 203 | 1.79e-15 | 74.3 |
MsG0280009610.01.T01 | MTR_2g090135 | 32.039 | 103 | 66 | 1 | 9 | 107 | 105 | 207 | 1.31e-13 | 69.3 |
MsG0280009610.01.T01 | MTR_8g012340 | 35.897 | 117 | 63 | 2 | 2 | 106 | 402 | 518 | 6.42e-13 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280009610.01.T01 | AT1G56090 | 57.394 | 284 | 79 | 7 | 2 | 261 | 7 | 272 | 5.05e-90 | 268 |
MsG0280009610.01.T01 | AT1G56090 | 57.394 | 284 | 79 | 7 | 2 | 261 | 81 | 346 | 3.43e-89 | 268 |
MsG0280009610.01.T01 | AT4G30480 | 36.893 | 103 | 61 | 1 | 9 | 107 | 112 | 214 | 2.51e-16 | 77.0 |
MsG0280009610.01.T01 | AT3G25230 | 33.588 | 131 | 75 | 1 | 2 | 120 | 400 | 530 | 1.07e-12 | 67.8 |
MsG0280009610.01.T01 | AT3G25230 | 33.588 | 131 | 75 | 1 | 2 | 120 | 400 | 530 | 1.10e-12 | 67.8 |
MsG0280009610.01.T01 | AT4G30480 | 35.955 | 89 | 53 | 1 | 9 | 93 | 112 | 200 | 1.24e-11 | 62.8 |
Find 41 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGGTAAAGAAGGAAGAAA+TGG | 0.313693 | 2:-55309571 | MsG0280009610.01.T01:CDS |
TAAGCTTCATGATTTCAAAA+AGG | 0.324407 | 2:-55311582 | MsG0280009610.01.T01:intron |
TCCAAAGCAGAATGTCCTTT+TGG | 0.352019 | 2:+55309316 | None:intergenic |
ATGCAGCAGCTTCTAATGTT+AGG | 0.374041 | 2:-55309539 | MsG0280009610.01.T01:CDS |
TCCTCTTCTGACTCTGGTAT+TGG | 0.396425 | 2:+55309639 | None:intergenic |
ACCAAAAGGACATTCTGCTT+TGG | 0.425541 | 2:-55309317 | MsG0280009610.01.T01:CDS |
GATGCTGAGGGCTCAAACAC+TGG | 0.436134 | 2:-55310173 | MsG0280009610.01.T01:CDS |
CCATGCTTTGGATTGTTGCT+CGG | 0.437664 | 2:+55309354 | None:intergenic |
GAGGTAAAGAAGGAAGAAAT+GGG | 0.452461 | 2:-55309570 | MsG0280009610.01.T01:CDS |
AGAGTCCGTCACGGTACATC+TGG | 0.455718 | 2:+55311702 | None:intergenic |
TAATGTTAGGAAAGATCTAA+AGG | 0.457566 | 2:-55309526 | MsG0280009610.01.T01:CDS |
AATGTTAGGAAAGATCTAAA+GGG | 0.493543 | 2:-55309525 | MsG0280009610.01.T01:CDS |
GCTAGAAAGAGAGGTAAAGA+AGG | 0.507146 | 2:-55309580 | MsG0280009610.01.T01:CDS |
AGAGTCAGAAGAGGAGTTCG+AGG | 0.514125 | 2:-55309631 | MsG0280009610.01.T01:CDS |
TGCTTTGGACTACGCTCGGT+GGG | 0.522289 | 2:-55309302 | MsG0280009610.01.T01:CDS |
TTACACGGACGCTATTGGTA+TGG | 0.529585 | 2:-55311660 | MsG0280009610.01.T01:CDS |
TCGAACTCCTCTTCTGACTC+TGG | 0.530257 | 2:+55309633 | None:intergenic |
AAAACGATTCCAAAACCAAA+AGG | 0.532797 | 2:-55309331 | MsG0280009610.01.T01:CDS |
TCAGAAACCTCTCATTTCAC+AGG | 0.560954 | 2:+55309187 | None:intergenic |
CTATGCAAAGCGATCTTCTG+AGG | 0.562298 | 2:+55311626 | None:intergenic |
CCGAGCAACAATCCAAAGCA+TGG | 0.565014 | 2:-55309354 | MsG0280009610.01.T01:CDS |
AAAGATCTAAAGGGTCAGCT+TGG | 0.567824 | 2:-55309516 | MsG0280009610.01.T01:CDS |
CAAGGCGATGCTAGAAAGAG+AGG | 0.568116 | 2:-55309589 | MsG0280009610.01.T01:CDS |
ATTCTGCTTTGGACTACGCT+CGG | 0.572004 | 2:-55309306 | MsG0280009610.01.T01:CDS |
CTAAAGGGTCAGCTTGGCAA+AGG | 0.576789 | 2:-55309510 | MsG0280009610.01.T01:intron |
TGCTCGCTTGAAGACACAGT+TGG | 0.578848 | 2:-55310062 | MsG0280009610.01.T01:CDS |
CGAGGAACATGAAGATGAGA+AGG | 0.581126 | 2:-55309613 | MsG0280009610.01.T01:CDS |
CAGTGGAGCATTGATGCTGA+GGG | 0.584787 | 2:-55310185 | MsG0280009610.01.T01:CDS |
ACAGTGGAGCATTGATGCTG+AGG | 0.595964 | 2:-55310186 | MsG0280009610.01.T01:CDS |
AGTTCCTAAAGCACAAAACA+AGG | 0.599618 | 2:-55309383 | MsG0280009610.01.T01:CDS |
TCAAACACTGGTGACACTGA+AGG | 0.602364 | 2:-55310161 | MsG0280009610.01.T01:CDS |
AGATGATTCTAGTGAAGATG+AGG | 0.603985 | 2:-55309269 | MsG0280009610.01.T01:CDS |
TCCAATACCAGAGTCAGAAG+AGG | 0.610299 | 2:-55309640 | MsG0280009610.01.T01:CDS |
CTGCTTTGGACTACGCTCGG+TGG | 0.619980 | 2:-55309303 | MsG0280009610.01.T01:CDS |
TTCACACGAAAACGGTACTG+TGG | 0.632801 | 2:+55309226 | None:intergenic |
ACATGAAGATGAGAAGGACA+AGG | 0.673983 | 2:-55309607 | MsG0280009610.01.T01:CDS |
CCGTGACGGACTCTACAAAG+AGG | 0.689205 | 2:-55311693 | MsG0280009610.01.T01:CDS |
CCTCTTTGTAGAGTCCGTCA+CGG | 0.707488 | 2:+55311693 | None:intergenic |
GCGACGAACAAGATCGAACG+CGG | 0.718343 | 2:-55311728 | MsG0280009610.01.T01:CDS |
GGTCACCAGATGTACCGTGA+CGG | 0.752683 | 2:-55311707 | MsG0280009610.01.T01:CDS |
GAGCTTGATAGCAATCACAG+TGG | 0.769707 | 2:-55310202 | MsG0280009610.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTCCTTAATTAAAAATA+CGG | - | Chr2:55310019-55310038 | MsG0280009610.01.T01:intron | 10.0% |
!!! | TTTATCGTTTTTTATTATAT+TGG | - | Chr2:55309514-55309533 | MsG0280009610.01.T01:CDS | 10.0% |
!! | TAAAATGAGAAATATTTGTT+GGG | - | Chr2:55310549-55310568 | MsG0280009610.01.T01:intron | 15.0% |
!! | TTCTAATAATTTAGATTAGT+TGG | - | Chr2:55310115-55310134 | MsG0280009610.01.T01:CDS | 15.0% |
!! | TTGTAAATATTGTATTAATG+AGG | - | Chr2:55309634-55309653 | MsG0280009610.01.T01:CDS | 15.0% |
!!! | GTTTTTTATTATATTGGATT+CGG | - | Chr2:55309520-55309539 | MsG0280009610.01.T01:CDS | 15.0% |
!! | AAAAATATCTTAACCTAGTT+AGG | + | Chr2:55309898-55309917 | None:intergenic | 20.0% |
!! | AATATTGTATTAATGAGGTT+CGG | - | Chr2:55309639-55309658 | MsG0280009610.01.T01:CDS | 20.0% |
!! | ATTATATTAGGTAGATTTGA+AGG | - | Chr2:55310923-55310942 | MsG0280009610.01.T01:intron | 20.0% |
!! | GATTTGTATTTGTAACAAAT+TGG | - | Chr2:55310263-55310282 | MsG0280009610.01.T01:intron | 20.0% |
!! | GTAAAATGAGAAATATTTGT+TGG | - | Chr2:55310548-55310567 | MsG0280009610.01.T01:intron | 20.0% |
!! | TAACACACATTAATTACAAT+TGG | + | Chr2:55309576-55309595 | None:intergenic | 20.0% |
!! | TATTGAGAAAAAGATAACTA+TGG | + | Chr2:55309484-55309503 | None:intergenic | 20.0% |
!! | TTGTAATTAATGTGTGTTAA+TGG | - | Chr2:55309577-55309596 | MsG0280009610.01.T01:CDS | 20.0% |
!!! | CTCTGTTCATTTTTTTTTTT+TGG | - | Chr2:55309400-55309419 | MsG0280009610.01.T01:intron | 20.0% |
!!! | TAAAATTTTATTTCCGCATT+TGG | + | Chr2:55310002-55310021 | None:intergenic | 20.0% |
!!! | TTTTATGAATATTCCTAACT+AGG | - | Chr2:55309882-55309901 | MsG0280009610.01.T01:intron | 20.0% |
! | AAAAAAATGAACAGAGATAG+TGG | + | Chr2:55309396-55309415 | None:intergenic | 25.0% |
! | AATGTTAGGAAAGATCTAAA+GGG | - | Chr2:55311404-55311423 | MsG0280009610.01.T01:intron | 25.0% |
! | AATTCTAGGTCAAATTTACA+AGG | + | Chr2:55311188-55311207 | None:intergenic | 25.0% |
! | AGAATTGCTAAATACTACAA+GGG | + | Chr2:55310075-55310094 | None:intergenic | 25.0% |
! | TAAGCTTCATGATTTCAAAA+AGG | - | Chr2:55309347-55309366 | MsG0280009610.01.T01:CDS | 25.0% |
! | TAATGTTAGGAAAGATCTAA+AGG | - | Chr2:55311403-55311422 | MsG0280009610.01.T01:intron | 25.0% |
! | TTGTTCAGAATTCAGATTAT+GGG | - | Chr2:55310155-55310174 | MsG0280009610.01.T01:CDS | 25.0% |
! | TTTGTTCAGAATTCAGATTA+TGG | - | Chr2:55310154-55310173 | MsG0280009610.01.T01:CDS | 25.0% |
!! | TCATTTTACTATGATTGACT+TGG | + | Chr2:55310537-55310556 | None:intergenic | 25.0% |
!!! | ACTTGCCGTATTTTTAATTA+AGG | + | Chr2:55310027-55310046 | None:intergenic | 25.0% |
!!! | TTATCCATTTTGTTTGACAA+TGG | - | Chr2:55310354-55310373 | MsG0280009610.01.T01:intron | 25.0% |
AAAAAGAAGGTAGAGAAGAA+GGG | - | Chr2:55311154-55311173 | MsG0280009610.01.T01:intron | 30.0% | |
AAAACGATTCCAAAACCAAA+AGG | - | Chr2:55311598-55311617 | MsG0280009610.01.T01:CDS | 30.0% | |
ATGATGCTTACTATCATTTC+AGG | - | Chr2:55310678-55310697 | MsG0280009610.01.T01:intron | 30.0% | |
CAAAAGGGTTCCAAAAAATA+CGG | + | Chr2:55310493-55310512 | None:intergenic | 30.0% | |
CATTCCAAGAACATAATTCT+AGG | + | Chr2:55311202-55311221 | None:intergenic | 30.0% | |
CGAAAGAGTCAAAAAAACAA+AGG | - | Chr2:55309941-55309960 | MsG0280009610.01.T01:intron | 30.0% | |
GAAGTAGGTCAATAAAAAGA+AGG | - | Chr2:55311141-55311160 | MsG0280009610.01.T01:intron | 30.0% | |
GAGAATTGCTAAATACTACA+AGG | + | Chr2:55310076-55310095 | None:intergenic | 30.0% | |
TAAAAAGAAGGTAGAGAAGA+AGG | - | Chr2:55311153-55311172 | MsG0280009610.01.T01:intron | 30.0% | |
TAAGCATTCTTGAAATTCGT+GGG | - | Chr2:55310046-55310065 | MsG0280009610.01.T01:intron | 30.0% | |
TATAGATGTGAAATGAAGAG+AGG | - | Chr2:55311112-55311131 | MsG0280009610.01.T01:intron | 30.0% | |
TATTGGAACTATCATAGTTC+TGG | - | Chr2:55309859-55309878 | MsG0280009610.01.T01:intron | 30.0% | |
TCAGTTGCATGCATTATATT+AGG | - | Chr2:55310911-55310930 | MsG0280009610.01.T01:intron | 30.0% | |
TGGTATTGTTTGAGGATTAT+TGG | - | Chr2:55309842-55309861 | MsG0280009610.01.T01:intron | 30.0% | |
TTAGGTAGATTTGAAGGATT+TGG | - | Chr2:55310929-55310948 | MsG0280009610.01.T01:intron | 30.0% | |
TTGACCTAGAATTATGTTCT+TGG | - | Chr2:55311195-55311214 | MsG0280009610.01.T01:intron | 30.0% | |
TTTACTTGTAGATCTGTAGA+AGG | - | Chr2:55310229-55310248 | MsG0280009610.01.T01:CDS | 30.0% | |
! | CAATTGTTTTCACACGAAAA+CGG | + | Chr2:55311714-55311733 | None:intergenic | 30.0% |
! | TATATTGGATTCGGTCTTAA+TGG | - | Chr2:55309529-55309548 | MsG0280009610.01.T01:CDS | 30.0% |
!! | AAGATTTTGATAGACTTCTG+AGG | + | Chr2:55310845-55310864 | None:intergenic | 30.0% |
!! | AATTTTATTTCCGCATTTGG+CGG | + | Chr2:55309999-55310018 | None:intergenic | 30.0% |
!! | ACTACTTTTGCCGTATTTTT+TGG | - | Chr2:55310480-55310499 | MsG0280009610.01.T01:intron | 30.0% |
!! | CATTTTGTTTGACAATGGTT+GGG | - | Chr2:55310359-55310378 | MsG0280009610.01.T01:intron | 30.0% |
!! | GGATTTCATACTTTGAAATG+AGG | - | Chr2:55310570-55310589 | MsG0280009610.01.T01:intron | 30.0% |
!!! | GGAATTTTTGGTATTGTTTG+AGG | - | Chr2:55309834-55309853 | MsG0280009610.01.T01:intron | 30.0% |
!!! | TGTTTTTTTGACTCTTTCGT+AGG | + | Chr2:55309940-55309959 | None:intergenic | 30.0% |
AAAAAAAAGGATTGCTCGAG+AGG | - | Chr2:55309808-55309827 | MsG0280009610.01.T01:intron | 35.0% | |
AAAAAAAGGATTGCTCGAGA+GGG | - | Chr2:55309809-55309828 | MsG0280009610.01.T01:intron | 35.0% | |
ACCAAAACTATGAGACTTGT+AGG | - | Chr2:55311506-55311525 | MsG0280009610.01.T01:intron | 35.0% | |
AGAGGTAAAGAAGGAAGAAA+TGG | - | Chr2:55311358-55311377 | MsG0280009610.01.T01:intron | 35.0% | |
AGATGATTCTAGTGAAGATG+AGG | - | Chr2:55311660-55311679 | MsG0280009610.01.T01:CDS | 35.0% | |
AGTTCCTAAAGCACAAAACA+AGG | - | Chr2:55311546-55311565 | MsG0280009610.01.T01:intron | 35.0% | |
ATGCATGCAACTGAAATGAA+AGG | + | Chr2:55310905-55310924 | None:intergenic | 35.0% | |
CCAACCATTGTCAAACAAAA+TGG | + | Chr2:55310361-55310380 | None:intergenic | 35.0% | |
GAAGAGAAACTGACAAGAAA+GGG | + | Chr2:55310596-55310615 | None:intergenic | 35.0% | |
GACTTTACTTACAGCACAAT+AGG | - | Chr2:55309751-55309770 | MsG0280009610.01.T01:intron | 35.0% | |
GAGGTAAAGAAGGAAGAAAT+GGG | - | Chr2:55311359-55311378 | MsG0280009610.01.T01:intron | 35.0% | |
GCTATCAACAGGATGAAAAA+GGG | + | Chr2:55310999-55311018 | None:intergenic | 35.0% | |
GTAAGCATTCTTGAAATTCG+TGG | - | Chr2:55310045-55310064 | MsG0280009610.01.T01:intron | 35.0% | |
TGCTATCAACAGGATGAAAA+AGG | + | Chr2:55311000-55311019 | None:intergenic | 35.0% | |
TTGTAGATCTGTAGAAGGAT+AGG | - | Chr2:55310234-55310253 | MsG0280009610.01.T01:intron | 35.0% | |
TTTCTATGATCACAATTCGC+AGG | + | Chr2:55310396-55310415 | None:intergenic | 35.0% | |
! | ACCTACAAGTCTCATAGTTT+TGG | + | Chr2:55311510-55311529 | None:intergenic | 35.0% |
! | CGTTTTCGTGTGAAAACAAT+TGG | - | Chr2:55311712-55311731 | MsG0280009610.01.T01:CDS | 35.0% |
! | TATGGGTTGTGAAATGTGAA+TGG | - | Chr2:55310172-55310191 | MsG0280009610.01.T01:CDS | 35.0% |
! | TTCATCAAAAGCGTACAACT+AGG | + | Chr2:55310618-55310637 | None:intergenic | 35.0% |
! | TTTTGATGTCAACAGACTCT+TGG | - | Chr2:55310807-55310826 | MsG0280009610.01.T01:intron | 35.0% |
!! | CCATTTTGTTTGACAATGGT+TGG | - | Chr2:55310358-55310377 | MsG0280009610.01.T01:intron | 35.0% |
!! | GATTGACTTGGATTAGATAG+AGG | + | Chr2:55310525-55310544 | None:intergenic | 35.0% |
!! | TTTTGATAGACTTCTGAGGA+TGG | + | Chr2:55310841-55310860 | None:intergenic | 35.0% |
!!! | GATGCTATTTTCATTGCTCA+AGG | - | Chr2:55311254-55311273 | MsG0280009610.01.T01:intron | 35.0% |
!!! | GATTCCTTGTTTTGTGCTTT+AGG | + | Chr2:55311553-55311572 | None:intergenic | 35.0% |
!!! | TTTTTCATCCTGTTGATAGC+AGG | - | Chr2:55310999-55311018 | MsG0280009610.01.T01:intron | 35.0% |
AAAGATCTAAAGGGTCAGCT+TGG | - | Chr2:55311413-55311432 | MsG0280009610.01.T01:intron | 40.0% | |
ACATGAAGATGAGAAGGACA+AGG | - | Chr2:55311322-55311341 | MsG0280009610.01.T01:intron | 40.0% | |
ACCAAAAGGACATTCTGCTT+TGG | - | Chr2:55311612-55311631 | MsG0280009610.01.T01:CDS | 40.0% | |
ATAGAGGCTTAGAGCTCAAA+AGG | + | Chr2:55310509-55310528 | None:intergenic | 40.0% | |
ATGCAGCAGCTTCTAATGTT+AGG | - | Chr2:55311390-55311409 | MsG0280009610.01.T01:intron | 40.0% | |
GAAGAGAGGAAAGTAGAAGT+AGG | - | Chr2:55311126-55311145 | MsG0280009610.01.T01:intron | 40.0% | |
GCTAGAAAGAGAGGTAAAGA+AGG | - | Chr2:55311349-55311368 | MsG0280009610.01.T01:intron | 40.0% | |
GGAAGAGAAACTGACAAGAA+AGG | + | Chr2:55310597-55310616 | None:intergenic | 40.0% | |
TAGAGGCTTAGAGCTCAAAA+GGG | + | Chr2:55310508-55310527 | None:intergenic | 40.0% | |
! | AACAGGATGAAAAAGGGCAT+GGG | + | Chr2:55310993-55311012 | None:intergenic | 40.0% |
! | TCCAAAGCAGAATGTCCTTT+TGG | + | Chr2:55311616-55311635 | None:intergenic | 40.0% |
! | TGGAATCGTTTTCCATGCTT+TGG | + | Chr2:55311590-55311609 | None:intergenic | 40.0% |
!! | GGCAAAGGTGTTATCAATGT+TGG | - | Chr2:55311434-55311453 | MsG0280009610.01.T01:intron | 40.0% |
!!! | CGAGCAATCCTTTTTTTTCC+CGG | + | Chr2:55309806-55309825 | None:intergenic | 40.0% |
!!! | GCAGAATGTCCTTTTGGTTT+TGG | + | Chr2:55311610-55311629 | None:intergenic | 40.0% |
ATCAGAGGCCGGGAAAAAAA+AGG | - | Chr2:55309795-55309814 | MsG0280009610.01.T01:intron | 45.0% | |
ATTTGGCGGAATTCATGGGA+TGG | + | Chr2:55309985-55310004 | None:intergenic | 45.0% | |
CAACAGGATGAAAAAGGGCA+TGG | + | Chr2:55310994-55311013 | None:intergenic | 45.0% | |
CGAGGAACATGAAGATGAGA+AGG | - | Chr2:55311316-55311335 | MsG0280009610.01.T01:intron | 45.0% | |
CTATGCAAAGCGATCTTCTG+AGG | + | Chr2:55309306-55309325 | None:intergenic | 45.0% | |
GATGGGTGGGCATACAAAAT+AGG | + | Chr2:55309967-55309986 | None:intergenic | 45.0% | |
TAGGTTATTAGCCCCTTTCC+CGG | - | Chr2:55309770-55309789 | MsG0280009610.01.T01:intron | 45.0% | |
TCAAACACTGGTGACACTGA+AGG | - | Chr2:55310768-55310787 | MsG0280009610.01.T01:intron | 45.0% | |
TCCAATACCAGAGTCAGAAG+AGG | - | Chr2:55311289-55311308 | MsG0280009610.01.T01:intron | 45.0% | |
TCCCGTTTGGATGAAAACCT+GGG | + | Chr2:55311482-55311501 | None:intergenic | 45.0% | |
TCCTCTTCTGACTCTGGTAT+TGG | + | Chr2:55311293-55311312 | None:intergenic | 45.0% | |
TGAGTGTTCCTGCTATCAAC+AGG | + | Chr2:55311010-55311029 | None:intergenic | 45.0% | |
TTACACGGACGCTATTGGTA+TGG | - | Chr2:55309269-55309288 | MsG0280009610.01.T01:CDS | 45.0% | |
TTCACACGAAAACGGTACTG+TGG | + | Chr2:55311706-55311725 | None:intergenic | 45.0% | |
TTCCCGTTTGGATGAAAACC+TGG | + | Chr2:55311483-55311502 | None:intergenic | 45.0% | |
TTTGGCGGAATTCATGGGAT+GGG | + | Chr2:55309984-55310003 | None:intergenic | 45.0% | |
! | ACCCCAGGTTTTCATCCAAA+CGG | - | Chr2:55311477-55311496 | MsG0280009610.01.T01:intron | 45.0% |
! | ATTCTGCTTTGGACTACGCT+CGG | - | Chr2:55311623-55311642 | MsG0280009610.01.T01:CDS | 45.0% |
! | CCATGCTTTGGATTGTTGCT+CGG | + | Chr2:55311578-55311597 | None:intergenic | 45.0% |
! | GAGCTTGATAGCAATCACAG+TGG | - | Chr2:55310727-55310746 | MsG0280009610.01.T01:intron | 45.0% |
!! | AACCTGGGGTCTGTTAGTTT+TGG | + | Chr2:55311467-55311486 | None:intergenic | 45.0% |
!! | AGTTTTGGTCACTTCCCGTT+TGG | + | Chr2:55311495-55311514 | None:intergenic | 45.0% |
!!! | AGAGGCGTTAGCGTTTTACA+CGG | - | Chr2:55309254-55309273 | MsG0280009610.01.T01:CDS | 45.0% |
AAAAGGATTGCTCGAGAGGG+AGG | - | Chr2:55309812-55309831 | MsG0280009610.01.T01:intron | 50.0% | |
AAAGGATTGCTCGAGAGGGA+GGG | - | Chr2:55309813-55309832 | MsG0280009610.01.T01:intron | 50.0% | |
AGAGTCAGAAGAGGAGTTCG+AGG | - | Chr2:55311298-55311317 | MsG0280009610.01.T01:intron | 50.0% | |
AGGTTATTAGCCCCTTTCCC+GGG | - | Chr2:55309771-55309790 | MsG0280009610.01.T01:intron | 50.0% | |
CAAGGCGATGCTAGAAAGAG+AGG | - | Chr2:55311340-55311359 | MsG0280009610.01.T01:intron | 50.0% | |
CCCATGAATTCCGCCAAATG+CGG | - | Chr2:55309986-55310005 | MsG0280009610.01.T01:intron | 50.0% | |
CCCGTTTGGATGAAAACCTG+GGG | + | Chr2:55311481-55311500 | None:intergenic | 50.0% | |
CCGAGCAACAATCCAAAGCA+TGG | - | Chr2:55311575-55311594 | MsG0280009610.01.T01:intron | 50.0% | |
CCGCATTTGGCGGAATTCAT+GGG | + | Chr2:55309989-55310008 | None:intergenic | 50.0% | |
CCTCTTTGTAGAGTCCGTCA+CGG | + | Chr2:55309239-55309258 | None:intergenic | 50.0% | |
CTAAAGGGTCAGCTTGGCAA+AGG | - | Chr2:55311419-55311438 | MsG0280009610.01.T01:intron | 50.0% | |
CTCCAAAACTAACAGACCCC+AGG | - | Chr2:55311462-55311481 | MsG0280009610.01.T01:intron | 50.0% | |
CTCTGTTCTCACCTGCGAAT+TGG | - | Chr2:55310438-55310457 | MsG0280009610.01.T01:intron | 50.0% | |
GTATGCAAGCACCAATTCGC+AGG | + | Chr2:55310452-55310471 | None:intergenic | 50.0% | |
TCCGCATTTGGCGGAATTCA+TGG | + | Chr2:55309990-55310009 | None:intergenic | 50.0% | |
TCGAACTCCTCTTCTGACTC+TGG | + | Chr2:55311299-55311318 | None:intergenic | 50.0% | |
TGCTCGCTTGAAGACACAGT+TGG | - | Chr2:55310867-55310886 | MsG0280009610.01.T01:intron | 50.0% | |
! | CCCCAGGTTTTCATCCAAAC+GGG | - | Chr2:55311478-55311497 | MsG0280009610.01.T01:intron | 50.0% |
! | CTCGAGAGGGAGGGAATTTT+TGG | - | Chr2:55309822-55309841 | MsG0280009610.01.T01:intron | 50.0% |
! | GAGGTTCGGTTAGACTCAAG+TGG | - | Chr2:55309653-55309672 | MsG0280009610.01.T01:CDS | 50.0% |
! | GCGTTTTACACGGACGCTAT+TGG | - | Chr2:55309264-55309283 | MsG0280009610.01.T01:CDS | 50.0% |
!! | ACAGTGGAGCATTGATGCTG+AGG | - | Chr2:55310743-55310762 | MsG0280009610.01.T01:intron | 50.0% |
!! | CAGTGGAGCATTGATGCTGA+GGG | - | Chr2:55310744-55310763 | MsG0280009610.01.T01:intron | 50.0% |
AGAGTCCGTCACGGTACATC+TGG | + | Chr2:55309230-55309249 | None:intergenic | 55.0% | |
GATGCTGAGGGCTCAAACAC+TGG | - | Chr2:55310756-55310775 | MsG0280009610.01.T01:intron | 55.0% | |
GCGACGAACAAGATCGAACG+CGG | - | Chr2:55309201-55309220 | MsG0280009610.01.T01:CDS | 55.0% | |
GCGGAATTCATGGGATGGGT+GGG | + | Chr2:55309980-55309999 | None:intergenic | 55.0% | |
GGTCACCAGATGTACCGTGA+CGG | - | Chr2:55309222-55309241 | MsG0280009610.01.T01:CDS | 55.0% | |
! | TGCTTTGGACTACGCTCGGT+GGG | - | Chr2:55311627-55311646 | MsG0280009610.01.T01:CDS | 55.0% |
! | TTTTCCCGGCCTCTGATTCC+CGG | + | Chr2:55309792-55309811 | None:intergenic | 55.0% |
!! | CCGTGACGGACTCTACAAAG+AGG | - | Chr2:55309236-55309255 | MsG0280009610.01.T01:CDS | 55.0% |
CTTTCCCGGGAATCAGAGGC+CGG | - | Chr2:55309784-55309803 | MsG0280009610.01.T01:intron | 60.0% | |
GCCTCTGATTCCCGGGAAAG+GGG | + | Chr2:55309784-55309803 | None:intergenic | 60.0% | |
GGCCTCTGATTCCCGGGAAA+GGG | + | Chr2:55309785-55309804 | None:intergenic | 60.0% | |
GGCGGAATTCATGGGATGGG+TGG | + | Chr2:55309981-55310000 | None:intergenic | 60.0% | |
TTTCCCGGCCTCTGATTCCC+GGG | + | Chr2:55309791-55309810 | None:intergenic | 60.0% | |
TTTCCCGGGAATCAGAGGCC+GGG | - | Chr2:55309785-55309804 | MsG0280009610.01.T01:intron | 60.0% | |
! | CTGCTTTGGACTACGCTCGG+TGG | - | Chr2:55311626-55311645 | MsG0280009610.01.T01:CDS | 60.0% |
CGGCCTCTGATTCCCGGGAA+AGG | + | Chr2:55309786-55309805 | None:intergenic | 65.0% | |
GCCCCTTTCCCGGGAATCAG+AGG | - | Chr2:55309780-55309799 | MsG0280009610.01.T01:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 55309198 | 55311753 | 55309198 | ID=MsG0280009610.01;Name=MsG0280009610.01 |
Chr2 | mRNA | 55309198 | 55311753 | 55309198 | ID=MsG0280009610.01.T01;Parent=MsG0280009610.01;Name=MsG0280009610.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|4|0|261 |
Chr2 | exon | 55311583 | 55311753 | 55311583 | ID=MsG0280009610.01.T01:exon:5976;Parent=MsG0280009610.01.T01 |
Chr2 | exon | 55310056 | 55310251 | 55310056 | ID=MsG0280009610.01.T01:exon:5977;Parent=MsG0280009610.01.T01 |
Chr2 | exon | 55309511 | 55309714 | 55309511 | ID=MsG0280009610.01.T01:exon:5978;Parent=MsG0280009610.01.T01 |
Chr2 | exon | 55309198 | 55309412 | 55309198 | ID=MsG0280009610.01.T01:exon:5979;Parent=MsG0280009610.01.T01 |
Chr2 | CDS | 55311583 | 55311753 | 55311583 | ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01 |
Chr2 | CDS | 55310056 | 55310251 | 55310056 | ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01 |
Chr2 | CDS | 55309511 | 55309714 | 55309511 | ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01 |
Chr2 | CDS | 55309198 | 55309412 | 55309198 | ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01 |
Gene Sequence |
Protein sequence |