AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009610.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009610.01.T01 MTR_2g067870 99.174 121 1 0 1 121 1 121 9.06e-86 251
MsG0280009610.01.T01 MTR_2g067860 75.000 164 8 1 131 261 4 167 7.67e-57 179
MsG0280009610.01.T01 MTR_7g059150 34.314 102 63 1 9 106 102 203 1.79e-15 74.3
MsG0280009610.01.T01 MTR_2g090135 32.039 103 66 1 9 107 105 207 1.31e-13 69.3
MsG0280009610.01.T01 MTR_8g012340 35.897 117 63 2 2 106 402 518 6.42e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009610.01.T01 AT1G56090 57.394 284 79 7 2 261 7 272 5.05e-90 268
MsG0280009610.01.T01 AT1G56090 57.394 284 79 7 2 261 81 346 3.43e-89 268
MsG0280009610.01.T01 AT4G30480 36.893 103 61 1 9 107 112 214 2.51e-16 77.0
MsG0280009610.01.T01 AT3G25230 33.588 131 75 1 2 120 400 530 1.07e-12 67.8
MsG0280009610.01.T01 AT3G25230 33.588 131 75 1 2 120 400 530 1.10e-12 67.8
MsG0280009610.01.T01 AT4G30480 35.955 89 53 1 9 93 112 200 1.24e-11 62.8

Find 41 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGTAAAGAAGGAAGAAA+TGG 0.313693 2:-55309571 MsG0280009610.01.T01:CDS
TAAGCTTCATGATTTCAAAA+AGG 0.324407 2:-55311582 MsG0280009610.01.T01:intron
TCCAAAGCAGAATGTCCTTT+TGG 0.352019 2:+55309316 None:intergenic
ATGCAGCAGCTTCTAATGTT+AGG 0.374041 2:-55309539 MsG0280009610.01.T01:CDS
TCCTCTTCTGACTCTGGTAT+TGG 0.396425 2:+55309639 None:intergenic
ACCAAAAGGACATTCTGCTT+TGG 0.425541 2:-55309317 MsG0280009610.01.T01:CDS
GATGCTGAGGGCTCAAACAC+TGG 0.436134 2:-55310173 MsG0280009610.01.T01:CDS
CCATGCTTTGGATTGTTGCT+CGG 0.437664 2:+55309354 None:intergenic
GAGGTAAAGAAGGAAGAAAT+GGG 0.452461 2:-55309570 MsG0280009610.01.T01:CDS
AGAGTCCGTCACGGTACATC+TGG 0.455718 2:+55311702 None:intergenic
TAATGTTAGGAAAGATCTAA+AGG 0.457566 2:-55309526 MsG0280009610.01.T01:CDS
AATGTTAGGAAAGATCTAAA+GGG 0.493543 2:-55309525 MsG0280009610.01.T01:CDS
GCTAGAAAGAGAGGTAAAGA+AGG 0.507146 2:-55309580 MsG0280009610.01.T01:CDS
AGAGTCAGAAGAGGAGTTCG+AGG 0.514125 2:-55309631 MsG0280009610.01.T01:CDS
TGCTTTGGACTACGCTCGGT+GGG 0.522289 2:-55309302 MsG0280009610.01.T01:CDS
TTACACGGACGCTATTGGTA+TGG 0.529585 2:-55311660 MsG0280009610.01.T01:CDS
TCGAACTCCTCTTCTGACTC+TGG 0.530257 2:+55309633 None:intergenic
AAAACGATTCCAAAACCAAA+AGG 0.532797 2:-55309331 MsG0280009610.01.T01:CDS
TCAGAAACCTCTCATTTCAC+AGG 0.560954 2:+55309187 None:intergenic
CTATGCAAAGCGATCTTCTG+AGG 0.562298 2:+55311626 None:intergenic
CCGAGCAACAATCCAAAGCA+TGG 0.565014 2:-55309354 MsG0280009610.01.T01:CDS
AAAGATCTAAAGGGTCAGCT+TGG 0.567824 2:-55309516 MsG0280009610.01.T01:CDS
CAAGGCGATGCTAGAAAGAG+AGG 0.568116 2:-55309589 MsG0280009610.01.T01:CDS
ATTCTGCTTTGGACTACGCT+CGG 0.572004 2:-55309306 MsG0280009610.01.T01:CDS
CTAAAGGGTCAGCTTGGCAA+AGG 0.576789 2:-55309510 MsG0280009610.01.T01:intron
TGCTCGCTTGAAGACACAGT+TGG 0.578848 2:-55310062 MsG0280009610.01.T01:CDS
CGAGGAACATGAAGATGAGA+AGG 0.581126 2:-55309613 MsG0280009610.01.T01:CDS
CAGTGGAGCATTGATGCTGA+GGG 0.584787 2:-55310185 MsG0280009610.01.T01:CDS
ACAGTGGAGCATTGATGCTG+AGG 0.595964 2:-55310186 MsG0280009610.01.T01:CDS
AGTTCCTAAAGCACAAAACA+AGG 0.599618 2:-55309383 MsG0280009610.01.T01:CDS
TCAAACACTGGTGACACTGA+AGG 0.602364 2:-55310161 MsG0280009610.01.T01:CDS
AGATGATTCTAGTGAAGATG+AGG 0.603985 2:-55309269 MsG0280009610.01.T01:CDS
TCCAATACCAGAGTCAGAAG+AGG 0.610299 2:-55309640 MsG0280009610.01.T01:CDS
CTGCTTTGGACTACGCTCGG+TGG 0.619980 2:-55309303 MsG0280009610.01.T01:CDS
TTCACACGAAAACGGTACTG+TGG 0.632801 2:+55309226 None:intergenic
ACATGAAGATGAGAAGGACA+AGG 0.673983 2:-55309607 MsG0280009610.01.T01:CDS
CCGTGACGGACTCTACAAAG+AGG 0.689205 2:-55311693 MsG0280009610.01.T01:CDS
CCTCTTTGTAGAGTCCGTCA+CGG 0.707488 2:+55311693 None:intergenic
GCGACGAACAAGATCGAACG+CGG 0.718343 2:-55311728 MsG0280009610.01.T01:CDS
GGTCACCAGATGTACCGTGA+CGG 0.752683 2:-55311707 MsG0280009610.01.T01:CDS
GAGCTTGATAGCAATCACAG+TGG 0.769707 2:-55310202 MsG0280009610.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCCTTAATTAAAAATA+CGG - Chr2:55310019-55310038 MsG0280009610.01.T01:intron 10.0%
!!! TTTATCGTTTTTTATTATAT+TGG - Chr2:55309514-55309533 MsG0280009610.01.T01:CDS 10.0%
!! TAAAATGAGAAATATTTGTT+GGG - Chr2:55310549-55310568 MsG0280009610.01.T01:intron 15.0%
!! TTCTAATAATTTAGATTAGT+TGG - Chr2:55310115-55310134 MsG0280009610.01.T01:CDS 15.0%
!! TTGTAAATATTGTATTAATG+AGG - Chr2:55309634-55309653 MsG0280009610.01.T01:CDS 15.0%
!!! GTTTTTTATTATATTGGATT+CGG - Chr2:55309520-55309539 MsG0280009610.01.T01:CDS 15.0%
!! AAAAATATCTTAACCTAGTT+AGG + Chr2:55309898-55309917 None:intergenic 20.0%
!! AATATTGTATTAATGAGGTT+CGG - Chr2:55309639-55309658 MsG0280009610.01.T01:CDS 20.0%
!! ATTATATTAGGTAGATTTGA+AGG - Chr2:55310923-55310942 MsG0280009610.01.T01:intron 20.0%
!! GATTTGTATTTGTAACAAAT+TGG - Chr2:55310263-55310282 MsG0280009610.01.T01:intron 20.0%
!! GTAAAATGAGAAATATTTGT+TGG - Chr2:55310548-55310567 MsG0280009610.01.T01:intron 20.0%
!! TAACACACATTAATTACAAT+TGG + Chr2:55309576-55309595 None:intergenic 20.0%
!! TATTGAGAAAAAGATAACTA+TGG + Chr2:55309484-55309503 None:intergenic 20.0%
!! TTGTAATTAATGTGTGTTAA+TGG - Chr2:55309577-55309596 MsG0280009610.01.T01:CDS 20.0%
!!! CTCTGTTCATTTTTTTTTTT+TGG - Chr2:55309400-55309419 MsG0280009610.01.T01:intron 20.0%
!!! TAAAATTTTATTTCCGCATT+TGG + Chr2:55310002-55310021 None:intergenic 20.0%
!!! TTTTATGAATATTCCTAACT+AGG - Chr2:55309882-55309901 MsG0280009610.01.T01:intron 20.0%
! AAAAAAATGAACAGAGATAG+TGG + Chr2:55309396-55309415 None:intergenic 25.0%
! AATGTTAGGAAAGATCTAAA+GGG - Chr2:55311404-55311423 MsG0280009610.01.T01:intron 25.0%
! AATTCTAGGTCAAATTTACA+AGG + Chr2:55311188-55311207 None:intergenic 25.0%
! AGAATTGCTAAATACTACAA+GGG + Chr2:55310075-55310094 None:intergenic 25.0%
! TAAGCTTCATGATTTCAAAA+AGG - Chr2:55309347-55309366 MsG0280009610.01.T01:CDS 25.0%
! TAATGTTAGGAAAGATCTAA+AGG - Chr2:55311403-55311422 MsG0280009610.01.T01:intron 25.0%
! TTGTTCAGAATTCAGATTAT+GGG - Chr2:55310155-55310174 MsG0280009610.01.T01:CDS 25.0%
! TTTGTTCAGAATTCAGATTA+TGG - Chr2:55310154-55310173 MsG0280009610.01.T01:CDS 25.0%
!! TCATTTTACTATGATTGACT+TGG + Chr2:55310537-55310556 None:intergenic 25.0%
!!! ACTTGCCGTATTTTTAATTA+AGG + Chr2:55310027-55310046 None:intergenic 25.0%
!!! TTATCCATTTTGTTTGACAA+TGG - Chr2:55310354-55310373 MsG0280009610.01.T01:intron 25.0%
AAAAAGAAGGTAGAGAAGAA+GGG - Chr2:55311154-55311173 MsG0280009610.01.T01:intron 30.0%
AAAACGATTCCAAAACCAAA+AGG - Chr2:55311598-55311617 MsG0280009610.01.T01:CDS 30.0%
ATGATGCTTACTATCATTTC+AGG - Chr2:55310678-55310697 MsG0280009610.01.T01:intron 30.0%
CAAAAGGGTTCCAAAAAATA+CGG + Chr2:55310493-55310512 None:intergenic 30.0%
CATTCCAAGAACATAATTCT+AGG + Chr2:55311202-55311221 None:intergenic 30.0%
CGAAAGAGTCAAAAAAACAA+AGG - Chr2:55309941-55309960 MsG0280009610.01.T01:intron 30.0%
GAAGTAGGTCAATAAAAAGA+AGG - Chr2:55311141-55311160 MsG0280009610.01.T01:intron 30.0%
GAGAATTGCTAAATACTACA+AGG + Chr2:55310076-55310095 None:intergenic 30.0%
TAAAAAGAAGGTAGAGAAGA+AGG - Chr2:55311153-55311172 MsG0280009610.01.T01:intron 30.0%
TAAGCATTCTTGAAATTCGT+GGG - Chr2:55310046-55310065 MsG0280009610.01.T01:intron 30.0%
TATAGATGTGAAATGAAGAG+AGG - Chr2:55311112-55311131 MsG0280009610.01.T01:intron 30.0%
TATTGGAACTATCATAGTTC+TGG - Chr2:55309859-55309878 MsG0280009610.01.T01:intron 30.0%
TCAGTTGCATGCATTATATT+AGG - Chr2:55310911-55310930 MsG0280009610.01.T01:intron 30.0%
TGGTATTGTTTGAGGATTAT+TGG - Chr2:55309842-55309861 MsG0280009610.01.T01:intron 30.0%
TTAGGTAGATTTGAAGGATT+TGG - Chr2:55310929-55310948 MsG0280009610.01.T01:intron 30.0%
TTGACCTAGAATTATGTTCT+TGG - Chr2:55311195-55311214 MsG0280009610.01.T01:intron 30.0%
TTTACTTGTAGATCTGTAGA+AGG - Chr2:55310229-55310248 MsG0280009610.01.T01:CDS 30.0%
! CAATTGTTTTCACACGAAAA+CGG + Chr2:55311714-55311733 None:intergenic 30.0%
! TATATTGGATTCGGTCTTAA+TGG - Chr2:55309529-55309548 MsG0280009610.01.T01:CDS 30.0%
!! AAGATTTTGATAGACTTCTG+AGG + Chr2:55310845-55310864 None:intergenic 30.0%
!! AATTTTATTTCCGCATTTGG+CGG + Chr2:55309999-55310018 None:intergenic 30.0%
!! ACTACTTTTGCCGTATTTTT+TGG - Chr2:55310480-55310499 MsG0280009610.01.T01:intron 30.0%
!! CATTTTGTTTGACAATGGTT+GGG - Chr2:55310359-55310378 MsG0280009610.01.T01:intron 30.0%
!! GGATTTCATACTTTGAAATG+AGG - Chr2:55310570-55310589 MsG0280009610.01.T01:intron 30.0%
!!! GGAATTTTTGGTATTGTTTG+AGG - Chr2:55309834-55309853 MsG0280009610.01.T01:intron 30.0%
!!! TGTTTTTTTGACTCTTTCGT+AGG + Chr2:55309940-55309959 None:intergenic 30.0%
AAAAAAAAGGATTGCTCGAG+AGG - Chr2:55309808-55309827 MsG0280009610.01.T01:intron 35.0%
AAAAAAAGGATTGCTCGAGA+GGG - Chr2:55309809-55309828 MsG0280009610.01.T01:intron 35.0%
ACCAAAACTATGAGACTTGT+AGG - Chr2:55311506-55311525 MsG0280009610.01.T01:intron 35.0%
AGAGGTAAAGAAGGAAGAAA+TGG - Chr2:55311358-55311377 MsG0280009610.01.T01:intron 35.0%
AGATGATTCTAGTGAAGATG+AGG - Chr2:55311660-55311679 MsG0280009610.01.T01:CDS 35.0%
AGTTCCTAAAGCACAAAACA+AGG - Chr2:55311546-55311565 MsG0280009610.01.T01:intron 35.0%
ATGCATGCAACTGAAATGAA+AGG + Chr2:55310905-55310924 None:intergenic 35.0%
CCAACCATTGTCAAACAAAA+TGG + Chr2:55310361-55310380 None:intergenic 35.0%
GAAGAGAAACTGACAAGAAA+GGG + Chr2:55310596-55310615 None:intergenic 35.0%
GACTTTACTTACAGCACAAT+AGG - Chr2:55309751-55309770 MsG0280009610.01.T01:intron 35.0%
GAGGTAAAGAAGGAAGAAAT+GGG - Chr2:55311359-55311378 MsG0280009610.01.T01:intron 35.0%
GCTATCAACAGGATGAAAAA+GGG + Chr2:55310999-55311018 None:intergenic 35.0%
GTAAGCATTCTTGAAATTCG+TGG - Chr2:55310045-55310064 MsG0280009610.01.T01:intron 35.0%
TGCTATCAACAGGATGAAAA+AGG + Chr2:55311000-55311019 None:intergenic 35.0%
TTGTAGATCTGTAGAAGGAT+AGG - Chr2:55310234-55310253 MsG0280009610.01.T01:intron 35.0%
TTTCTATGATCACAATTCGC+AGG + Chr2:55310396-55310415 None:intergenic 35.0%
! ACCTACAAGTCTCATAGTTT+TGG + Chr2:55311510-55311529 None:intergenic 35.0%
! CGTTTTCGTGTGAAAACAAT+TGG - Chr2:55311712-55311731 MsG0280009610.01.T01:CDS 35.0%
! TATGGGTTGTGAAATGTGAA+TGG - Chr2:55310172-55310191 MsG0280009610.01.T01:CDS 35.0%
! TTCATCAAAAGCGTACAACT+AGG + Chr2:55310618-55310637 None:intergenic 35.0%
! TTTTGATGTCAACAGACTCT+TGG - Chr2:55310807-55310826 MsG0280009610.01.T01:intron 35.0%
!! CCATTTTGTTTGACAATGGT+TGG - Chr2:55310358-55310377 MsG0280009610.01.T01:intron 35.0%
!! GATTGACTTGGATTAGATAG+AGG + Chr2:55310525-55310544 None:intergenic 35.0%
!! TTTTGATAGACTTCTGAGGA+TGG + Chr2:55310841-55310860 None:intergenic 35.0%
!!! GATGCTATTTTCATTGCTCA+AGG - Chr2:55311254-55311273 MsG0280009610.01.T01:intron 35.0%
!!! GATTCCTTGTTTTGTGCTTT+AGG + Chr2:55311553-55311572 None:intergenic 35.0%
!!! TTTTTCATCCTGTTGATAGC+AGG - Chr2:55310999-55311018 MsG0280009610.01.T01:intron 35.0%
AAAGATCTAAAGGGTCAGCT+TGG - Chr2:55311413-55311432 MsG0280009610.01.T01:intron 40.0%
ACATGAAGATGAGAAGGACA+AGG - Chr2:55311322-55311341 MsG0280009610.01.T01:intron 40.0%
ACCAAAAGGACATTCTGCTT+TGG - Chr2:55311612-55311631 MsG0280009610.01.T01:CDS 40.0%
ATAGAGGCTTAGAGCTCAAA+AGG + Chr2:55310509-55310528 None:intergenic 40.0%
ATGCAGCAGCTTCTAATGTT+AGG - Chr2:55311390-55311409 MsG0280009610.01.T01:intron 40.0%
GAAGAGAGGAAAGTAGAAGT+AGG - Chr2:55311126-55311145 MsG0280009610.01.T01:intron 40.0%
GCTAGAAAGAGAGGTAAAGA+AGG - Chr2:55311349-55311368 MsG0280009610.01.T01:intron 40.0%
GGAAGAGAAACTGACAAGAA+AGG + Chr2:55310597-55310616 None:intergenic 40.0%
TAGAGGCTTAGAGCTCAAAA+GGG + Chr2:55310508-55310527 None:intergenic 40.0%
! AACAGGATGAAAAAGGGCAT+GGG + Chr2:55310993-55311012 None:intergenic 40.0%
! TCCAAAGCAGAATGTCCTTT+TGG + Chr2:55311616-55311635 None:intergenic 40.0%
! TGGAATCGTTTTCCATGCTT+TGG + Chr2:55311590-55311609 None:intergenic 40.0%
!! GGCAAAGGTGTTATCAATGT+TGG - Chr2:55311434-55311453 MsG0280009610.01.T01:intron 40.0%
!!! CGAGCAATCCTTTTTTTTCC+CGG + Chr2:55309806-55309825 None:intergenic 40.0%
!!! GCAGAATGTCCTTTTGGTTT+TGG + Chr2:55311610-55311629 None:intergenic 40.0%
ATCAGAGGCCGGGAAAAAAA+AGG - Chr2:55309795-55309814 MsG0280009610.01.T01:intron 45.0%
ATTTGGCGGAATTCATGGGA+TGG + Chr2:55309985-55310004 None:intergenic 45.0%
CAACAGGATGAAAAAGGGCA+TGG + Chr2:55310994-55311013 None:intergenic 45.0%
CGAGGAACATGAAGATGAGA+AGG - Chr2:55311316-55311335 MsG0280009610.01.T01:intron 45.0%
CTATGCAAAGCGATCTTCTG+AGG + Chr2:55309306-55309325 None:intergenic 45.0%
GATGGGTGGGCATACAAAAT+AGG + Chr2:55309967-55309986 None:intergenic 45.0%
TAGGTTATTAGCCCCTTTCC+CGG - Chr2:55309770-55309789 MsG0280009610.01.T01:intron 45.0%
TCAAACACTGGTGACACTGA+AGG - Chr2:55310768-55310787 MsG0280009610.01.T01:intron 45.0%
TCCAATACCAGAGTCAGAAG+AGG - Chr2:55311289-55311308 MsG0280009610.01.T01:intron 45.0%
TCCCGTTTGGATGAAAACCT+GGG + Chr2:55311482-55311501 None:intergenic 45.0%
TCCTCTTCTGACTCTGGTAT+TGG + Chr2:55311293-55311312 None:intergenic 45.0%
TGAGTGTTCCTGCTATCAAC+AGG + Chr2:55311010-55311029 None:intergenic 45.0%
TTACACGGACGCTATTGGTA+TGG - Chr2:55309269-55309288 MsG0280009610.01.T01:CDS 45.0%
TTCACACGAAAACGGTACTG+TGG + Chr2:55311706-55311725 None:intergenic 45.0%
TTCCCGTTTGGATGAAAACC+TGG + Chr2:55311483-55311502 None:intergenic 45.0%
TTTGGCGGAATTCATGGGAT+GGG + Chr2:55309984-55310003 None:intergenic 45.0%
! ACCCCAGGTTTTCATCCAAA+CGG - Chr2:55311477-55311496 MsG0280009610.01.T01:intron 45.0%
! ATTCTGCTTTGGACTACGCT+CGG - Chr2:55311623-55311642 MsG0280009610.01.T01:CDS 45.0%
! CCATGCTTTGGATTGTTGCT+CGG + Chr2:55311578-55311597 None:intergenic 45.0%
! GAGCTTGATAGCAATCACAG+TGG - Chr2:55310727-55310746 MsG0280009610.01.T01:intron 45.0%
!! AACCTGGGGTCTGTTAGTTT+TGG + Chr2:55311467-55311486 None:intergenic 45.0%
!! AGTTTTGGTCACTTCCCGTT+TGG + Chr2:55311495-55311514 None:intergenic 45.0%
!!! AGAGGCGTTAGCGTTTTACA+CGG - Chr2:55309254-55309273 MsG0280009610.01.T01:CDS 45.0%
AAAAGGATTGCTCGAGAGGG+AGG - Chr2:55309812-55309831 MsG0280009610.01.T01:intron 50.0%
AAAGGATTGCTCGAGAGGGA+GGG - Chr2:55309813-55309832 MsG0280009610.01.T01:intron 50.0%
AGAGTCAGAAGAGGAGTTCG+AGG - Chr2:55311298-55311317 MsG0280009610.01.T01:intron 50.0%
AGGTTATTAGCCCCTTTCCC+GGG - Chr2:55309771-55309790 MsG0280009610.01.T01:intron 50.0%
CAAGGCGATGCTAGAAAGAG+AGG - Chr2:55311340-55311359 MsG0280009610.01.T01:intron 50.0%
CCCATGAATTCCGCCAAATG+CGG - Chr2:55309986-55310005 MsG0280009610.01.T01:intron 50.0%
CCCGTTTGGATGAAAACCTG+GGG + Chr2:55311481-55311500 None:intergenic 50.0%
CCGAGCAACAATCCAAAGCA+TGG - Chr2:55311575-55311594 MsG0280009610.01.T01:intron 50.0%
CCGCATTTGGCGGAATTCAT+GGG + Chr2:55309989-55310008 None:intergenic 50.0%
CCTCTTTGTAGAGTCCGTCA+CGG + Chr2:55309239-55309258 None:intergenic 50.0%
CTAAAGGGTCAGCTTGGCAA+AGG - Chr2:55311419-55311438 MsG0280009610.01.T01:intron 50.0%
CTCCAAAACTAACAGACCCC+AGG - Chr2:55311462-55311481 MsG0280009610.01.T01:intron 50.0%
CTCTGTTCTCACCTGCGAAT+TGG - Chr2:55310438-55310457 MsG0280009610.01.T01:intron 50.0%
GTATGCAAGCACCAATTCGC+AGG + Chr2:55310452-55310471 None:intergenic 50.0%
TCCGCATTTGGCGGAATTCA+TGG + Chr2:55309990-55310009 None:intergenic 50.0%
TCGAACTCCTCTTCTGACTC+TGG + Chr2:55311299-55311318 None:intergenic 50.0%
TGCTCGCTTGAAGACACAGT+TGG - Chr2:55310867-55310886 MsG0280009610.01.T01:intron 50.0%
! CCCCAGGTTTTCATCCAAAC+GGG - Chr2:55311478-55311497 MsG0280009610.01.T01:intron 50.0%
! CTCGAGAGGGAGGGAATTTT+TGG - Chr2:55309822-55309841 MsG0280009610.01.T01:intron 50.0%
! GAGGTTCGGTTAGACTCAAG+TGG - Chr2:55309653-55309672 MsG0280009610.01.T01:CDS 50.0%
! GCGTTTTACACGGACGCTAT+TGG - Chr2:55309264-55309283 MsG0280009610.01.T01:CDS 50.0%
!! ACAGTGGAGCATTGATGCTG+AGG - Chr2:55310743-55310762 MsG0280009610.01.T01:intron 50.0%
!! CAGTGGAGCATTGATGCTGA+GGG - Chr2:55310744-55310763 MsG0280009610.01.T01:intron 50.0%
AGAGTCCGTCACGGTACATC+TGG + Chr2:55309230-55309249 None:intergenic 55.0%
GATGCTGAGGGCTCAAACAC+TGG - Chr2:55310756-55310775 MsG0280009610.01.T01:intron 55.0%
GCGACGAACAAGATCGAACG+CGG - Chr2:55309201-55309220 MsG0280009610.01.T01:CDS 55.0%
GCGGAATTCATGGGATGGGT+GGG + Chr2:55309980-55309999 None:intergenic 55.0%
GGTCACCAGATGTACCGTGA+CGG - Chr2:55309222-55309241 MsG0280009610.01.T01:CDS 55.0%
! TGCTTTGGACTACGCTCGGT+GGG - Chr2:55311627-55311646 MsG0280009610.01.T01:CDS 55.0%
! TTTTCCCGGCCTCTGATTCC+CGG + Chr2:55309792-55309811 None:intergenic 55.0%
!! CCGTGACGGACTCTACAAAG+AGG - Chr2:55309236-55309255 MsG0280009610.01.T01:CDS 55.0%
CTTTCCCGGGAATCAGAGGC+CGG - Chr2:55309784-55309803 MsG0280009610.01.T01:intron 60.0%
GCCTCTGATTCCCGGGAAAG+GGG + Chr2:55309784-55309803 None:intergenic 60.0%
GGCCTCTGATTCCCGGGAAA+GGG + Chr2:55309785-55309804 None:intergenic 60.0%
GGCGGAATTCATGGGATGGG+TGG + Chr2:55309981-55310000 None:intergenic 60.0%
TTTCCCGGCCTCTGATTCCC+GGG + Chr2:55309791-55309810 None:intergenic 60.0%
TTTCCCGGGAATCAGAGGCC+GGG - Chr2:55309785-55309804 MsG0280009610.01.T01:intron 60.0%
! CTGCTTTGGACTACGCTCGG+TGG - Chr2:55311626-55311645 MsG0280009610.01.T01:CDS 60.0%
CGGCCTCTGATTCCCGGGAA+AGG + Chr2:55309786-55309805 None:intergenic 65.0%
GCCCCTTTCCCGGGAATCAG+AGG - Chr2:55309780-55309799 MsG0280009610.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 55309198 55311753 55309198 ID=MsG0280009610.01;Name=MsG0280009610.01
Chr2 mRNA 55309198 55311753 55309198 ID=MsG0280009610.01.T01;Parent=MsG0280009610.01;Name=MsG0280009610.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|4|0|261
Chr2 exon 55311583 55311753 55311583 ID=MsG0280009610.01.T01:exon:5976;Parent=MsG0280009610.01.T01
Chr2 exon 55310056 55310251 55310056 ID=MsG0280009610.01.T01:exon:5977;Parent=MsG0280009610.01.T01
Chr2 exon 55309511 55309714 55309511 ID=MsG0280009610.01.T01:exon:5978;Parent=MsG0280009610.01.T01
Chr2 exon 55309198 55309412 55309198 ID=MsG0280009610.01.T01:exon:5979;Parent=MsG0280009610.01.T01
Chr2 CDS 55311583 55311753 55311583 ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01
Chr2 CDS 55310056 55310251 55310056 ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01
Chr2 CDS 55309511 55309714 55309511 ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01
Chr2 CDS 55309198 55309412 55309198 ID=MsG0280009610.01.T01:cds;Parent=MsG0280009610.01.T01
Gene Sequence

>MsG0280009610.01.T01

ATGGCGACGAACAAGATCGAACGCGGTCACCAGATGTACCGTGACGGACTCTACAAAGAGGCGTTAGCGTTTTACACGGACGCTATTGGTATGGCGAAGACGAATCCTCAGAAGATCGCTTTGCATAGTAATCGTGCTGCTTGTTTTCTTAAGCTTCATGATTTCAAAAAGGCAGCAGAAGAATGTACGTCAGTGCTTGAGCTTGATAGCAATCACAGTGGAGCATTGATGCTGAGGGCTCAAACACTGGTGACACTGAAGGAGTATCATTCAGCACTTTTTGATGTCAACAGACTCTTGGAGTTGAATCCATCCTCAGAAGTCTATCAAAATCTTCATGCTCGCTTGAAGACACAGTTGGTACGATCTGTGTTGCTAAGAAATGATGCTATTTTCATTGCTCAAGGAAAGTCACTTGCTCCAATACCAGAGTCAGAAGAGGAGTTCGAGGAACATGAAGATGAGAAGGACAAGGCGATGCTAGAAAGAGAGGTAAAGAAGGAAGAAATGGGACAGAAACATGCAGCAGCTTCTAATGTTAGGAAAGATCTAAAGGGTCAGCTTGGCAAAGAGAATATAGTTCCTAAAGCACAAAACAAGGAATCATCCGAGCAACAATCCAAAGCATGGAAAACGATTCCAAAACCAAAAGGACATTCTGCTTTGGACTACGCTCGGTGGGACAATGTCGAAGATGATTCTAGTGAAGATGAGGATGAAGATGATGAATCTTTGCCACAGTACCGTTTTCGTGTGAAAACAATTGGTGTACGTCCTGTGAAATGA

Protein sequence

>MsG0280009610.01.T01

MATNKIERGHQMYRDGLYKEALAFYTDAIGMAKTNPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLVRSVLLRNDAIFIAQGKSLAPIPESEEEFEEHEDEKDKAMLEREVKKEEMGQKHAAASNVRKDLKGQLGKENIVPKAQNKESSEQQSKAWKTIPKPKGHSALDYARWDNVEDDSSEDEDEDDESLPQYRFRVKTIGVRPVK*