Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014054.01.T01 | YP_009141610.1 | 100 | 714 | 0 | 0 | 3 | 716 | 357 | 1070 | 0 | 1474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014054.01.T01 | Q0ZJ28 | 93.548 | 713 | 46 | 0 | 3 | 715 | 357 | 1069 | 0 | 1392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014054.01.T01 | A0A109RTI1 | 100.000 | 714 | 0 | 0 | 3 | 716 | 357 | 1070 | 0.0 | 1474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048690.01 | MsG0380014054.01 | 0.805593 | 1.238558e-49 | 6.578734e-47 |
| MsG0080048691.01 | MsG0380014054.01 | 0.823332 | 1.466654e-53 | 1.258991e-50 |
| MsG0080048692.01 | MsG0380014054.01 | 0.820371 | 7.104538e-53 | 5.611308e-50 |
| MsG0080048697.01 | MsG0380014054.01 | 0.822507 | 2.283199e-53 | 1.914843e-50 |
| MsG0080048699.01 | MsG0380014054.01 | 0.803028 | 4.239036e-49 | 2.107852e-46 |
| MsG0080049076.01 | MsG0380014054.01 | 0.805063 | 1.599688e-49 | 8.382090e-47 |
| MsG0280010695.01 | MsG0380014054.01 | 0.803673 | 3.116108e-49 | 1.575334e-46 |
| MsG0380013888.01 | MsG0380014054.01 | 0.848852 | 4.706436e-60 | 8.754299e-57 |
| MsG0380013890.01 | MsG0380014054.01 | 0.819823 | 9.485287e-53 | 7.378297e-50 |
| MsG0380013918.01 | MsG0380014054.01 | 0.814267 | 1.680926e-51 | 1.122683e-48 |
| MsG0380013926.01 | MsG0380014054.01 | 0.861039 | 1.357201e-63 | 3.787363e-60 |
| MsG0380013931.01 | MsG0380014054.01 | 0.808574 | 2.896285e-50 | 1.661901e-47 |
| MsG0380013936.01 | MsG0380014054.01 | 0.902173 | 1.270678e-78 | 1.777087e-74 |
| MsG0380013937.01 | MsG0380014054.01 | 0.891021 | 5.809844e-74 | 5.007724e-70 |
| MsG0380013940.01 | MsG0380014054.01 | 0.827690 | 1.360786e-54 | 1.323294e-51 |
| MsG0380013941.01 | MsG0380014054.01 | 0.849091 | 4.039396e-60 | 7.572482e-57 |
| MsG0380013942.01 | MsG0380014054.01 | 0.809394 | 1.933492e-50 | 1.133909e-47 |
| MsG0380013943.01 | MsG0380014054.01 | 0.827328 | 1.662159e-54 | 1.599698e-51 |
| MsG0380013944.01 | MsG0380014054.01 | 0.829814 | 4.170267e-55 | 4.315984e-52 |
| MsG0380013945.01 | MsG0380014054.01 | 0.826561 | 2.535759e-54 | 2.386361e-51 |
| MsG0380013951.01 | MsG0380014054.01 | 0.805550 | 1.264471e-49 | 6.708818e-47 |
| MsG0380013952.01 | MsG0380014054.01 | 0.812206 | 4.764504e-51 | 3.010491e-48 |
| MsG0380013953.01 | MsG0380014054.01 | 0.805466 | 1.316668e-49 | 6.971025e-47 |
| MsG0380013956.01 | MsG0380014054.01 | 0.806304 | 8.778460e-50 | 4.748451e-47 |
| MsG0380013957.01 | MsG0380014054.01 | 0.829549 | 4.837723e-55 | 4.967102e-52 |
| MsG0380013959.01 | MsG0380014054.01 | 0.807863 | 4.106687e-50 | 2.312708e-47 |
| MsG0380013961.01 | MsG0380014054.01 | 0.843271 | 1.552352e-58 | 2.416185e-55 |
| MsG0380013962.01 | MsG0380014054.01 | 0.837096 | 6.356975e-57 | 8.171132e-54 |
| MsG0380013966.01 | MsG0380014054.01 | 0.850106 | 2.103406e-60 | 4.075658e-57 |
| MsG0380013967.01 | MsG0380014054.01 | 0.831505 | 1.607442e-55 | 1.747824e-52 |
| MsG0380013968.01 | MsG0380014054.01 | 0.800166 | 1.636873e-48 | 7.569113e-46 |
| MsG0380013969.01 | MsG0380014054.01 | 0.808233 | 3.424382e-50 | 1.947510e-47 |
| MsG0380013971.01 | MsG0380014054.01 | 0.830719 | 2.507134e-55 | 2.663433e-52 |
| MsG0380013975.01 | MsG0380014054.01 | 0.830215 | 3.328487e-55 | 3.484502e-52 |
| MsG0380013977.01 | MsG0380014054.01 | 0.838695 | 2.467999e-57 | 3.331786e-54 |
| MsG0380013983.01 | MsG0380014054.01 | 0.819865 | 9.280338e-53 | 7.227079e-50 |
| MsG0380013984.01 | MsG0380014054.01 | 0.810477 | 1.130573e-50 | 6.821955e-48 |
| MsG0380013999.01 | MsG0380014054.01 | 0.801532 | 8.611895e-49 | 4.122574e-46 |
| MsG0380014005.01 | MsG0380014054.01 | 0.822279 | 2.578365e-53 | 2.148427e-50 |
| MsG0380014006.01 | MsG0380014054.01 | 0.802241 | 6.158106e-49 | 3.001498e-46 |
| MsG0380014017.01 | MsG0380014054.01 | 0.811530 | 6.686849e-51 | 4.149331e-48 |
| MsG0380014018.01 | MsG0380014054.01 | 0.806066 | 9.853185e-50 | 5.297592e-47 |
| MsG0380014023.01 | MsG0380014054.01 | 0.821908 | 3.143109e-53 | 2.591355e-50 |
| MsG0380014024.01 | MsG0380014054.01 | 0.804526 | 2.070412e-49 | 1.069903e-46 |
| MsG0380014026.01 | MsG0380014054.01 | 0.860672 | 1.754502e-63 | 4.834874e-60 |
| MsG0380014027.01 | MsG0380014054.01 | 0.844531 | 7.136905e-59 | 1.155605e-55 |
| MsG0380014031.01 | MsG0380014054.01 | 0.807587 | 4.699815e-50 | 2.627710e-47 |
| MsG0380014032.01 | MsG0380014054.01 | 0.815808 | 7.645163e-52 | 5.324837e-49 |
| MsG0380014033.01 | MsG0380014054.01 | 0.823726 | 1.185770e-53 | 1.029505e-50 |
| MsG0380014034.01 | MsG0380014054.01 | 0.801419 | 9.086945e-49 | 4.337436e-46 |
| MsG0380014039.01 | MsG0380014054.01 | 0.811434 | 7.014686e-51 | 4.341768e-48 |
| MsG0380014040.01 | MsG0380014054.01 | 0.819760 | 9.807092e-53 | 7.615166e-50 |
| MsG0380014046.01 | MsG0380014054.01 | 0.967176 | 6.433113e-127 | 4.753703e-121 |
| MsG0380014054.01 | MsG0380014057.01 | 0.816048 | 6.758415e-52 | 4.738385e-49 |
| MsG0380014054.01 | MsG0480018296.01 | 0.823201 | 1.573494e-53 | 1.345785e-50 |
| MsG0380014054.01 | MsG0480021054.01 | 0.810848 | 9.396935e-51 | 5.726916e-48 |
| MsG0380014054.01 | MsG0480023480.01 | 0.809086 | 2.251184e-50 | 1.309393e-47 |
| MsG0380014054.01 | MsG0580027677.01 | 0.856932 | 2.301686e-62 | 5.584083e-59 |
| MsG0380014054.01 | MsG0780040316.01 | 0.823174 | 1.596354e-53 | 1.364323e-50 |
| MsG0280006475.01 | MsG0380014054.01 | 0.815378 | 9.534836e-52 | 6.562852e-49 |
| MsG0280009733.01 | MsG0380014054.01 | 0.822590 | 2.183627e-53 | 1.835843e-50 |
| MsG0280010137.01 | MsG0380014054.01 | 0.806720 | 7.173267e-50 | 3.921650e-47 |
| MsG0280010143.01 | MsG0380014054.01 | 0.821711 | 3.491437e-53 | 2.862436e-50 |
| MsG0280010144.01 | MsG0380014054.01 | 0.814356 | 1.606286e-51 | 1.075397e-48 |
| MsG0280010145.01 | MsG0380014054.01 | 0.808243 | 3.407622e-50 | 1.938544e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014054.01.T01 | MTR_4g051130 | 99.299 | 713 | 5 | 0 | 3 | 715 | 344 | 1056 | 0.0 | 1454 |
| MsG0380014054.01.T01 | MTR_0002s0510 | 80.112 | 714 | 132 | 4 | 3 | 710 | 413 | 1122 | 0.0 | 1174 |
| MsG0380014054.01.T01 | MTR_1g058960 | 81.646 | 158 | 7 | 1 | 349 | 506 | 58 | 193 | 2.70e-80 | 254 |
| MsG0380014054.01.T01 | MTR_0265s0030 | 100.000 | 115 | 0 | 0 | 392 | 506 | 1 | 115 | 1.12e-74 | 236 |
| MsG0380014054.01.T01 | MTR_7g077330 | 96.154 | 78 | 3 | 0 | 266 | 343 | 1 | 78 | 7.14e-47 | 160 |
| MsG0380014054.01.T01 | MTR_8g023445 | 28.199 | 422 | 259 | 8 | 294 | 697 | 1598 | 1993 | 1.34e-36 | 149 |
| MsG0380014054.01.T01 | MTR_1g023500 | 25.339 | 442 | 280 | 8 | 294 | 715 | 782 | 1193 | 2.67e-35 | 144 |
| MsG0380014054.01.T01 | MTR_4g055180 | 90.323 | 62 | 6 | 0 | 17 | 78 | 20 | 81 | 6.35e-34 | 126 |
| MsG0380014054.01.T01 | MTR_6g061700 | 85.915 | 71 | 10 | 0 | 589 | 659 | 5 | 75 | 7.76e-34 | 126 |
| MsG0380014054.01.T01 | MTR_3g105990 | 25.147 | 509 | 293 | 17 | 228 | 699 | 724 | 1181 | 4.17e-28 | 121 |
| MsG0380014054.01.T01 | MTR_4g124030 | 25.635 | 394 | 251 | 9 | 294 | 682 | 770 | 1126 | 6.27e-27 | 118 |
| MsG0380014054.01.T01 | MTR_2g040120 | 66.667 | 72 | 24 | 0 | 30 | 101 | 9 | 80 | 7.68e-25 | 99.0 |
| MsG0380014054.01.T01 | MTR_4g039510 | 86.275 | 51 | 7 | 0 | 241 | 291 | 39 | 89 | 5.73e-23 | 94.4 |
| MsG0380014054.01.T01 | MTR_0552s0020 | 100.000 | 42 | 0 | 0 | 194 | 235 | 1 | 42 | 8.93e-21 | 87.4 |
| MsG0380014054.01.T01 | MTR_4g021033 | 100.000 | 42 | 0 | 0 | 194 | 235 | 1 | 42 | 8.93e-21 | 87.4 |
| MsG0380014054.01.T01 | MTR_7g052990 | 88.889 | 45 | 5 | 0 | 638 | 682 | 21 | 65 | 1.35e-18 | 80.9 |
| MsG0380014054.01.T01 | MTR_6g042920 | 76.471 | 51 | 11 | 1 | 323 | 373 | 65 | 114 | 4.62e-18 | 81.6 |
| MsG0380014054.01.T01 | MTR_7g052900 | 86.667 | 45 | 6 | 0 | 638 | 682 | 21 | 65 | 1.86e-17 | 77.4 |
| MsG0380014054.01.T01 | MTR_5g088810 | 84.444 | 45 | 7 | 0 | 638 | 682 | 21 | 65 | 8.43e-17 | 75.5 |
| MsG0380014054.01.T01 | MTR_5g085695 | 72.727 | 44 | 12 | 0 | 281 | 324 | 2 | 45 | 5.01e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014054.01.T01 | ATCG00190 | 91.201 | 716 | 61 | 1 | 3 | 716 | 357 | 1072 | 0.0 | 1360 |
| MsG0380014054.01.T01 | AT4G21710 | 26.651 | 424 | 261 | 8 | 294 | 697 | 779 | 1172 | 8.75e-38 | 152 |
| MsG0380014054.01.T01 | AT5G45140 | 27.553 | 421 | 262 | 8 | 294 | 695 | 754 | 1150 | 4.99e-35 | 143 |
| MsG0380014054.01.T01 | AT5G45140 | 27.553 | 421 | 262 | 8 | 294 | 695 | 754 | 1150 | 4.99e-35 | 143 |
| MsG0380014054.01.T01 | AT1G29940 | 27.200 | 375 | 220 | 12 | 298 | 658 | 756 | 1091 | 1.10e-25 | 114 |
| MsG0380014054.01.T01 | AT3G23780 | 24.036 | 441 | 254 | 9 | 298 | 700 | 769 | 1166 | 3.79e-25 | 112 |
| MsG0380014054.01.T01 | AT3G23780 | 24.036 | 441 | 254 | 9 | 298 | 700 | 769 | 1166 | 3.79e-25 | 112 |
| MsG0380014054.01.T01 | AT3G18090 | 24.194 | 434 | 263 | 9 | 298 | 700 | 651 | 1049 | 1.47e-24 | 110 |
| MsG0380014054.01.T01 | AT3G18090 | 24.444 | 225 | 137 | 3 | 298 | 517 | 651 | 847 | 3.37e-13 | 73.9 |
| MsG0380014054.01.T01 | AT3G18090 | 24.444 | 225 | 137 | 3 | 298 | 517 | 651 | 847 | 4.02e-13 | 73.6 |
Find 175 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGAAAATTGAGTTATT+TGG | 0.135693 | 3:+48743112 | MsG0380014054.01.T01:CDS |
| TGTCTAAATTTCGGAGTAAA+TGG | 0.137285 | 3:-48744087 | None:intergenic |
| CTTGTTTCGCCCTTCCTTTA+AGG | 0.204769 | 3:-48744864 | None:intergenic |
| GTTACACAACAACCCCTTAA+AGG | 0.212213 | 3:+48744850 | MsG0380014054.01.T01:CDS |
| TGGATTCGATGTTTGTTTAC+TGG | 0.222331 | 3:-48744665 | None:intergenic |
| ATATATATATGAATCGTTTC+TGG | 0.228166 | 3:-48744346 | None:intergenic |
| GAACGTTGATATCTAATTAA+TGG | 0.244746 | 3:-48743764 | None:intergenic |
| TTTGAACAGCCTGTTATAAT+AGG | 0.245428 | 3:+48744751 | MsG0380014054.01.T01:CDS |
| TGAATTAATTTCAAGATATA+AGG | 0.248171 | 3:-48744778 | None:intergenic |
| GGAATCAATGTAGGACTTAT+TGG | 0.263649 | 3:+48743230 | MsG0380014054.01.T01:CDS |
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 3:+48744222 | MsG0380014054.01.T01:CDS |
| AGCACTGAATCGAGGTATTC+AGG | 0.270037 | 3:+48743400 | MsG0380014054.01.T01:CDS |
| GATTCATAAGTGGTTGTTAA+TGG | 0.270524 | 3:-48743023 | None:intergenic |
| CGATCTAAAACTTGAGATAA+TGG | 0.281648 | 3:-48743062 | None:intergenic |
| GGTCTTCCATCTTGCAAATA+AGG | 0.291965 | 3:-48744463 | None:intergenic |
| TTGTTTCGCCCTTCCTTTAA+GGG | 0.292882 | 3:-48744863 | None:intergenic |
| GCATCATTATGCTCGATAAA+AGG | 0.305503 | 3:-48743539 | None:intergenic |
| ATTCGTGAGGGTACCCCTAA+TGG | 0.306675 | 3:-48744505 | None:intergenic |
| GGGAGAAAATTGAGTTATTT+GGG | 0.307341 | 3:+48743113 | MsG0380014054.01.T01:CDS |
| TCAAATATTCCGCTCTTTCC+CGG | 0.314064 | 3:-48744709 | None:intergenic |
| CGCCAAGTGGCCTTAGATTC+AGG | 0.326928 | 3:+48743650 | MsG0380014054.01.T01:CDS |
| TGTTGGCGGTGAACTCGCTT+TGG | 0.329325 | 3:+48743877 | MsG0380014054.01.T01:CDS |
| CGCATTTACCTTTATGAACC+TGG | 0.329782 | 3:-48743817 | None:intergenic |
| AACGATCTTTCCTGCGTGTT+CGG | 0.330632 | 3:-48743687 | None:intergenic |
| GGAATATTTGATGGAAGAAC+AGG | 0.334674 | 3:+48744721 | MsG0380014054.01.T01:CDS |
| AATGAATGTAGGACAGATAT+TGG | 0.340082 | 3:+48744525 | MsG0380014054.01.T01:CDS |
| AAACTTCCTTCCTTTGAATC+TGG | 0.340714 | 3:-48745134 | None:intergenic |
| TCTGGAGCATCCACAGGTTT+AGG | 0.340865 | 3:-48745033 | None:intergenic |
| TCACGCAAGGATTGGTCCTT+GGG | 0.341088 | 3:+48743265 | MsG0380014054.01.T01:CDS |
| ACGAGCAATCGAAAAGATTC+TGG | 0.342745 | 3:-48745051 | None:intergenic |
| ATATGGTCTTCAACCCATTA+GGG | 0.343228 | 3:+48744491 | MsG0380014054.01.T01:CDS |
| GTCAAGCAGTTCCTCTTTCT+CGG | 0.344262 | 3:+48743594 | MsG0380014054.01.T01:CDS |
| CTGGGATCTTGGGTAGAAAC+AGG | 0.344385 | 3:+48744127 | MsG0380014054.01.T01:CDS |
| CCATGAACTATTTGGGTCAA+TGG | 0.354074 | 3:-48743092 | None:intergenic |
| GTACTCGGAACTACGATTAT+TGG | 0.356639 | 3:+48745000 | MsG0380014054.01.T01:CDS |
| CGGTCCGAAAAGTGCATTGT+TGG | 0.359288 | 3:+48743614 | MsG0380014054.01.T01:CDS |
| AGCGGGAACTCCTGAATCTA+AGG | 0.364603 | 3:-48743660 | None:intergenic |
| CGTTCGAGAACTACGATCTT+TGG | 0.364953 | 3:+48745071 | MsG0380014054.01.T01:CDS |
| TATGCTCGATAAAAGGAATC+AGG | 0.367331 | 3:-48743532 | None:intergenic |
| TCCGCTCTTTCCCGGATACT+CGG | 0.379405 | 3:-48744701 | None:intergenic |
| TTGGGTCCTGGAGGATTGAC+GGG | 0.382208 | 3:+48743131 | MsG0380014054.01.T01:CDS |
| GAATGTTCACTCGGATTAGC+TGG | 0.386652 | 3:+48744547 | MsG0380014054.01.T01:CDS |
| GATATTTGAACCCGAGTATC+CGG | 0.389575 | 3:+48744690 | MsG0380014054.01.T01:CDS |
| GATATGGTCTTCAACCCATT+AGG | 0.395616 | 3:+48744490 | MsG0380014054.01.T01:CDS |
| GTTTGGGCGCTCGAGGGGTT+CGG | 0.396040 | 3:+48744913 | MsG0380014054.01.T01:CDS |
| GTTGGCGGTGAACTCGCTTT+GGG | 0.396452 | 3:+48743878 | MsG0380014054.01.T01:CDS |
| AGATGGAAGACCCGTTGATA+TGG | 0.398344 | 3:+48744474 | MsG0380014054.01.T01:CDS |
| ATTCCTTCCGAGGTGTCAAT+TGG | 0.403361 | 3:-48743212 | None:intergenic |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 3:+48744214 | MsG0380014054.01.T01:CDS |
| TGTAGGACTTATTGGATCCT+TGG | 0.411030 | 3:+48743238 | MsG0380014054.01.T01:CDS |
| TCTAACTATTGCATGGGAAC+AGG | 0.414074 | 3:+48743460 | MsG0380014054.01.T01:CDS |
| GAAAAGTGCATTGTTGGAAC+TGG | 0.419529 | 3:+48743620 | MsG0380014054.01.T01:CDS |
| TTCACGCAAGGATTGGTCCT+TGG | 0.420745 | 3:+48743264 | MsG0380014054.01.T01:CDS |
| TTTGGGTCCTGGAGGATTGA+CGG | 0.423824 | 3:+48743130 | MsG0380014054.01.T01:CDS |
| GAATTGTGATTCTGGGATCT+TGG | 0.426630 | 3:+48744116 | MsG0380014054.01.T01:CDS |
| ATGGAGGTTTGGGCGCTCGA+GGG | 0.426714 | 3:+48744907 | MsG0380014054.01.T01:CDS |
| GTCTAAATTTCGGAGTAAAT+GGG | 0.428736 | 3:-48744086 | None:intergenic |
| AACTATTTGGGTCAATGGAT+TGG | 0.429624 | 3:-48743087 | None:intergenic |
| GCCGGGAGACATGGAAATAA+AGG | 0.429982 | 3:+48744406 | MsG0380014054.01.T01:CDS |
| CCATTGACCCAAATAGTTCA+TGG | 0.431227 | 3:+48743092 | MsG0380014054.01.T01:CDS |
| AAGTAGAGATGAATACTATA+TGG | 0.431841 | 3:+48743358 | MsG0380014054.01.T01:CDS |
| TTCGTGAGGGTACCCCTAAT+GGG | 0.434009 | 3:-48744504 | None:intergenic |
| ATTATAACAGGCTGTTCAAA+AGG | 0.436541 | 3:-48744748 | None:intergenic |
| AGGACAACGGGTAGGCGAAA+TGG | 0.436703 | 3:+48744888 | MsG0380014054.01.T01:CDS |
| ACTTGTCTAAAACTACCTAT+AGG | 0.437083 | 3:+48744262 | MsG0380014054.01.T01:CDS |
| GAGGATTCTTTCGCCATTTG+AGG | 0.441108 | 3:-48744175 | None:intergenic |
| GATATCCATCCTAGTCACTA+TGG | 0.449002 | 3:+48743179 | MsG0380014054.01.T01:CDS |
| ACCTTTATTTCCATGTCTCC+CGG | 0.449391 | 3:-48744407 | None:intergenic |
| AAATTGAGTTATTTGGGTCC+TGG | 0.453699 | 3:+48743119 | MsG0380014054.01.T01:CDS |
| ACTCGGCCCCTACCACCTAT+AGG | 0.455800 | 3:-48744277 | None:intergenic |
| AATGGAGGTTTGGGCGCTCG+AGG | 0.461267 | 3:+48744906 | MsG0380014054.01.T01:CDS |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 3:-48744205 | None:intergenic |
| GGTAGGCGAAATGGAGGTTT+GGG | 0.465784 | 3:+48744897 | MsG0380014054.01.T01:CDS |
| GGGTAGGCGAAATGGAGGTT+TGG | 0.465926 | 3:+48744896 | MsG0380014054.01.T01:CDS |
| GGGTAAATTAACGCCTCAAA+TGG | 0.467677 | 3:+48744162 | MsG0380014054.01.T01:CDS |
| GATCTAAAACTTGAGATAAT+GGG | 0.468332 | 3:-48743061 | None:intergenic |
| GGAAAGAGCGGAATATTTGA+TGG | 0.469164 | 3:+48744712 | MsG0380014054.01.T01:CDS |
| CCGCTCTTTCCCGGATACTC+GGG | 0.478316 | 3:-48744700 | None:intergenic |
| AAGAATTTCTAACTATTGCA+TGG | 0.481440 | 3:+48743453 | MsG0380014054.01.T01:CDS |
| GGCGAAACAAGGAGGACAAC+GGG | 0.481846 | 3:+48744876 | MsG0380014054.01.T01:CDS |
| CCTGCGTGTTCGGCTATAGC+GGG | 0.483049 | 3:-48743677 | None:intergenic |
| AATTGTGATTCTGGGATCTT+GGG | 0.486220 | 3:+48744117 | MsG0380014054.01.T01:CDS |
| TGTTCATATCTCTCATCAAA+AGG | 0.491842 | 3:-48744601 | None:intergenic |
| TTGGCAATTCACGCAAGGAT+TGG | 0.498707 | 3:+48743257 | MsG0380014054.01.T01:CDS |
| CAAGTTGATGATAAAATACA+TGG | 0.502523 | 3:+48744802 | MsG0380014054.01.T01:CDS |
| GTGCATTGTTGGAACTGGAT+TGG | 0.504759 | 3:+48743625 | MsG0380014054.01.T01:CDS |
| TGGAGGTTTGGGCGCTCGAG+GGG | 0.505858 | 3:+48744908 | MsG0380014054.01.T01:CDS |
| CTCCTGAATCTAAGGCCACT+TGG | 0.506387 | 3:-48743652 | None:intergenic |
| TGTACTCATTAGTGAACGTC+TGG | 0.512500 | 3:+48743955 | MsG0380014054.01.T01:CDS |
| AGAACTACGATCTTTGGCTC+TGG | 0.513829 | 3:+48745077 | MsG0380014054.01.T01:CDS |
| GTTCGCCCCGTCAATCCTCC+AGG | 0.515843 | 3:-48743137 | None:intergenic |
| GATATGCCTTATTTGCAAGA+TGG | 0.518600 | 3:+48744457 | MsG0380014054.01.T01:CDS |
| TATTAGTAGCTTATATGCCA+TGG | 0.519177 | 3:+48743909 | MsG0380014054.01.T01:CDS |
| GTAAACAAACATCGAATCCA+TGG | 0.519391 | 3:+48744668 | MsG0380014054.01.T01:CDS |
| CAGAAACGTGAAATTAAAGT+AGG | 0.520965 | 3:+48744373 | MsG0380014054.01.T01:CDS |
| ATATAGTATTCATCTCTACT+TGG | 0.523407 | 3:-48743356 | None:intergenic |
| AAAGTAGGTGATAAAGTGGC+CGG | 0.529519 | 3:+48744388 | MsG0380014054.01.T01:CDS |
| AAAACTACCTATAGGTGGTA+GGG | 0.530153 | 3:+48744270 | MsG0380014054.01.T01:CDS |
| GCATTTACCTTTATGAACCT+GGG | 0.530323 | 3:-48743816 | None:intergenic |
| AAAGATTCTGGAGCATCCAC+AGG | 0.531781 | 3:-48745039 | None:intergenic |
| GCAGATGGTGCTGCTACTGT+TGG | 0.531919 | 3:+48743860 | MsG0380014054.01.T01:CDS |
| GATAAAGTGGCCGGGAGACA+TGG | 0.532845 | 3:+48744397 | MsG0380014054.01.T01:CDS |
| AGAAAGACTTCCAGATTCAA+AGG | 0.533242 | 3:+48745124 | MsG0380014054.01.T01:CDS |
| GGGTTGAAGACCATATCAAC+GGG | 0.535156 | 3:-48744484 | None:intergenic |
| CACAACAACCCCTTAAAGGA+AGG | 0.535519 | 3:+48744854 | MsG0380014054.01.T01:CDS |
| AATTCTTGACGGTATCGAGC+TGG | 0.536702 | 3:-48743437 | None:intergenic |
| TAAAACTACCTATAGGTGGT+AGG | 0.538804 | 3:+48744269 | MsG0380014054.01.T01:CDS |
| CAATAGTTAGAAATTCTTGA+CGG | 0.539101 | 3:-48743448 | None:intergenic |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 3:-48744197 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 3:-48744194 | None:intergenic |
| TACTCGGGTTCAAATATCCA+TGG | 0.546454 | 3:-48744685 | None:intergenic |
| TCCTGCGTGTTCGGCTATAG+CGG | 0.549505 | 3:-48743678 | None:intergenic |
| AGAATTTCTAACTATTGCAT+GGG | 0.549733 | 3:+48743454 | MsG0380014054.01.T01:CDS |
| CAGATATTGGAATGTTCACT+CGG | 0.551609 | 3:+48744538 | MsG0380014054.01.T01:CDS |
| TAGTGATTCTTTCAGGACCA+TGG | 0.551937 | 3:-48744042 | None:intergenic |
| GAATACTATATGGTAGCGAC+GGG | 0.553560 | 3:+48743368 | MsG0380014054.01.T01:CDS |
| GATGGTGCTGCTACTGTTGG+CGG | 0.553778 | 3:+48743863 | MsG0380014054.01.T01:CDS |
| CATTGACCCAAATAGTTCAT+GGG | 0.556065 | 3:+48743093 | MsG0380014054.01.T01:CDS |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 3:+48744215 | MsG0380014054.01.T01:CDS |
| GCCGAGTTATTGATGTGAGA+TGG | 0.559021 | 3:+48744293 | MsG0380014054.01.T01:CDS |
| CTCGGAACTACGATTATTGG+AGG | 0.559077 | 3:+48745003 | MsG0380014054.01.T01:CDS |
| AGACTTCCAGATTCAAAGGA+AGG | 0.563377 | 3:+48745128 | MsG0380014054.01.T01:CDS |
| GGAAGTCTTTCTCAGATACA+AGG | 0.565963 | 3:-48745113 | None:intergenic |
| AACAAGTGCATAATGTCCAC+TGG | 0.566338 | 3:-48744830 | None:intergenic |
| TGTTTCGCCCTTCCTTTAAG+GGG | 0.567625 | 3:-48744862 | None:intergenic |
| AATGTTCACTCGGATTAGCT+GGG | 0.569063 | 3:+48744548 | MsG0380014054.01.T01:CDS |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 3:+48744186 | MsG0380014054.01.T01:CDS |
| TGAATACTATATGGTAGCGA+CGG | 0.571395 | 3:+48743367 | MsG0380014054.01.T01:CDS |
| TCCTACATTGATTCCTTCCG+AGG | 0.572209 | 3:-48743222 | None:intergenic |
| CAAATGCGTCCATAGTGACT+AGG | 0.573493 | 3:-48743188 | None:intergenic |
| CTTAAAGGAAGGGCGAAACA+AGG | 0.579473 | 3:+48744865 | MsG0380014054.01.T01:CDS |
| AATTAAAGTAGGTGATAAAG+TGG | 0.581077 | 3:+48744384 | MsG0380014054.01.T01:CDS |
| ATATTTGAACCCGAGTATCC+GGG | 0.581389 | 3:+48744691 | MsG0380014054.01.T01:CDS |
| CAGACTCATGTGACAAGCCA+TGG | 0.581560 | 3:+48744025 | MsG0380014054.01.T01:CDS |
| CTGTCCTACATTCATTCGTG+AGG | 0.583153 | 3:-48744518 | None:intergenic |
| AGTAAATGGGCTTCTAGATG+TGG | 0.584284 | 3:-48744073 | None:intergenic |
| CCCGAGTATCCGGGAAAGAG+CGG | 0.584519 | 3:+48744700 | MsG0380014054.01.T01:CDS |
| TGTCCAATTGACACCTCGGA+AGG | 0.584582 | 3:+48743209 | MsG0380014054.01.T01:CDS |
| ATGCTCGATAAAAGGAATCA+GGG | 0.587469 | 3:-48743531 | None:intergenic |
| TGGGATCTTGGGTAGAAACA+GGG | 0.592045 | 3:+48744128 | MsG0380014054.01.T01:CDS |
| TCAGAATTGTAACCTTCCCA+TGG | 0.596416 | 3:-48743926 | None:intergenic |
| ATTAGTAGCTTATATGCCAT+GGG | 0.596673 | 3:+48743910 | MsG0380014054.01.T01:CDS |
| AAGTAGGTGATAAAGTGGCC+GGG | 0.597954 | 3:+48744389 | MsG0380014054.01.T01:CDS |
| GGGCGAAACAAGGAGGACAA+CGG | 0.598993 | 3:+48744875 | MsG0380014054.01.T01:CDS |
| TCCATCTCACATCAATAACT+CGG | 0.602104 | 3:-48744294 | None:intergenic |
| CACGCAAGGATTGGTCCTTG+GGG | 0.608804 | 3:+48743266 | MsG0380014054.01.T01:CDS |
| GTAGCTTATATGCCATGGGA+AGG | 0.611195 | 3:+48743914 | MsG0380014054.01.T01:CDS |
| TGTCCTACATTCATTCGTGA+GGG | 0.611498 | 3:-48744517 | None:intergenic |
| GATCCTTGGCAATTCACGCA+AGG | 0.614349 | 3:+48743252 | MsG0380014054.01.T01:CDS |
| AAAATACATGGACGTTCCAG+TGG | 0.614997 | 3:+48744814 | MsG0380014054.01.T01:CDS |
| AACTGGATTGGAACGCCAAG+TGG | 0.615266 | 3:+48743637 | MsG0380014054.01.T01:CDS |
| AAACTACCTATAGGTGGTAG+GGG | 0.618823 | 3:+48744271 | MsG0380014054.01.T01:CDS |
| TGATGAGAGATATGAACAGG+AGG | 0.620223 | 3:+48744606 | MsG0380014054.01.T01:CDS |
| AATCCTTGCGTGAATTGCCA+AGG | 0.621341 | 3:-48743255 | None:intergenic |
| CATTTGTCCAATTGACACCT+CGG | 0.622149 | 3:+48743205 | MsG0380014054.01.T01:CDS |
| GTACCCTCACGAATGAATGT+AGG | 0.622385 | 3:+48744514 | MsG0380014054.01.T01:CDS |
| TGGGTTGAAGACCATATCAA+CGG | 0.622611 | 3:-48744485 | None:intergenic |
| TGCGTCCATAGTGACTAGGA+TGG | 0.626242 | 3:-48743184 | None:intergenic |
| AAACAAGGAGGACAACGGGT+AGG | 0.626804 | 3:+48744880 | MsG0380014054.01.T01:CDS |
| ACGCAAGGATTGGTCCTTGG+GGG | 0.629421 | 3:+48743267 | MsG0380014054.01.T01:CDS |
| TTGAGTTATTTGGGTCCTGG+AGG | 0.630319 | 3:+48743122 | MsG0380014054.01.T01:CDS |
| TGGGTCCTGGAGGATTGACG+GGG | 0.631061 | 3:+48743132 | MsG0380014054.01.T01:CDS |
| GGGATCTTGGGTAGAAACAG+GGG | 0.635116 | 3:+48744129 | MsG0380014054.01.T01:CDS |
| ACAACAACCCCTTAAAGGAA+GGG | 0.636584 | 3:+48744855 | MsG0380014054.01.T01:CDS |
| ACCTCGGAAGGAATCAATGT+AGG | 0.642821 | 3:+48743221 | MsG0380014054.01.T01:CDS |
| AGGAACAATACCTAAACCTG+TGG | 0.656849 | 3:+48745023 | MsG0380014054.01.T01:CDS |
| AAAGCTCGTCAAGAAGTACT+CGG | 0.659322 | 3:+48744985 | MsG0380014054.01.T01:CDS |
| ACAACGGGTAGGCGAAATGG+AGG | 0.659407 | 3:+48744891 | MsG0380014054.01.T01:CDS |
| TATGGTCTTCAACCCATTAG+GGG | 0.670295 | 3:+48744492 | MsG0380014054.01.T01:CDS |
| GATTCAGGTATCGACCTCAA+AGG | 0.672007 | 3:+48744237 | MsG0380014054.01.T01:CDS |
| TGTCTAAAACTACCTATAGG+TGG | 0.673297 | 3:+48744265 | MsG0380014054.01.T01:CDS |
| CCCGCTATAGCCGAACACGC+AGG | 0.684746 | 3:+48743677 | MsG0380014054.01.T01:CDS |
| GAATATTTGATGGAAGAACA+GGG | 0.689025 | 3:+48744722 | MsG0380014054.01.T01:CDS |
| AAAGGAAGGGCGAAACAAGG+AGG | 0.708508 | 3:+48744868 | MsG0380014054.01.T01:CDS |
| ACTGAATCGAGGTATTCAGG+AGG | 0.734798 | 3:+48743403 | MsG0380014054.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAATTTCAAGATATA+AGG | - | Chr3:48744781-48744800 | None:intergenic | 15.0% |
| !! | ATATATATATGAATCGTTTC+TGG | - | Chr3:48744349-48744368 | None:intergenic | 20.0% |
| !!! | AAGATCATTTTATTTGGAAA+TGG | + | Chr3:48743725-48743744 | MsG0380014054.01.T01:CDS | 20.0% |
| !!! | AGATCATTTTATTTGGAAAT+GGG | + | Chr3:48743726-48743745 | MsG0380014054.01.T01:CDS | 20.0% |
| !!! | ATTTTATTAGTGATTCTTTC+AGG | - | Chr3:48744052-48744071 | None:intergenic | 20.0% |
| !!! | TTCCATTTTTGTCTAAATTT+CGG | - | Chr3:48744099-48744118 | None:intergenic | 20.0% |
| ! | AAAAATGGAATTGTGATTCT+GGG | + | Chr3:48744109-48744128 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | AAAGGTAAATGCGTAAAAAA+GGG | + | Chr3:48743827-48743846 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | + | Chr3:48743453-48743472 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | AAGCTCCAATAGAAAAATAT+TGG | - | Chr3:48743511-48743530 | None:intergenic | 25.0% |
| ! | AAGTAGAGATGAATACTATA+TGG | + | Chr3:48743358-48743377 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | AATTAAAGTAGGTGATAAAG+TGG | + | Chr3:48744384-48744403 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | + | Chr3:48743454-48743473 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | ATATAGTATTCATCTCTACT+TGG | - | Chr3:48743359-48743378 | None:intergenic | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | - | Chr3:48743451-48743470 | None:intergenic | 25.0% |
| ! | CCAATAGAAAAATATTGGAA+GGG | - | Chr3:48743506-48743525 | None:intergenic | 25.0% |
| ! | CTCTCAGAAATTTCAAAAAA+CGG | - | Chr3:48743305-48743324 | None:intergenic | 25.0% |
| ! | GAACGTTGATATCTAATTAA+TGG | - | Chr3:48743767-48743786 | None:intergenic | 25.0% |
| ! | TAAAGGTAAATGCGTAAAAA+AGG | + | Chr3:48743826-48743845 | MsG0380014054.01.T01:CDS | 25.0% |
| ! | TCCAATAGAAAAATATTGGA+AGG | - | Chr3:48743507-48743526 | None:intergenic | 25.0% |
| !! | ACTGACAAGATCATTTTATT+TGG | + | Chr3:48743719-48743738 | MsG0380014054.01.T01:CDS | 25.0% |
| !! | GATCTAAAACTTGAGATAAT+GGG | - | Chr3:48743064-48743083 | None:intergenic | 25.0% |
| !! | TAAGGTTTTCCTATTATAAC+AGG | - | Chr3:48744763-48744782 | None:intergenic | 25.0% |
| !!! | CAAGTTGATGATAAAATACA+TGG | + | Chr3:48744802-48744821 | MsG0380014054.01.T01:CDS | 25.0% |
| AATGAATGTAGGACAGATAT+TGG | + | Chr3:48744525-48744544 | MsG0380014054.01.T01:CDS | 30.0% | |
| AGATTATTACGAGCTATACT+TGG | + | Chr3:48744214-48744233 | MsG0380014054.01.T01:CDS | 30.0% | |
| ATTAGTAGCTTATATGCCAT+GGG | + | Chr3:48743910-48743929 | MsG0380014054.01.T01:CDS | 30.0% | |
| ATTATAACAGGCTGTTCAAA+AGG | - | Chr3:48744751-48744770 | None:intergenic | 30.0% | |
| CAAAAATGGAATTGTGATTC+TGG | + | Chr3:48744108-48744127 | MsG0380014054.01.T01:CDS | 30.0% | |
| CAGAAACGTGAAATTAAAGT+AGG | + | Chr3:48744373-48744392 | MsG0380014054.01.T01:CDS | 30.0% | |
| CTCCGAAATTTAGACAAAAA+TGG | + | Chr3:48744094-48744113 | MsG0380014054.01.T01:CDS | 30.0% | |
| GAATATTTGATGGAAGAACA+GGG | + | Chr3:48744722-48744741 | MsG0380014054.01.T01:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | + | Chr3:48744215-48744234 | MsG0380014054.01.T01:CDS | 30.0% | |
| GATTCATAAGTGGTTGTTAA+TGG | - | Chr3:48743026-48743045 | None:intergenic | 30.0% | |
| GGGAGAAAATTGAGTTATTT+GGG | + | Chr3:48743113-48743132 | MsG0380014054.01.T01:CDS | 30.0% | |
| GTCTAAATTTCGGAGTAAAT+GGG | - | Chr3:48744089-48744108 | None:intergenic | 30.0% | |
| TATTAGTAGCTTATATGCCA+TGG | + | Chr3:48743909-48743928 | MsG0380014054.01.T01:CDS | 30.0% | |
| TCCAAAAAACGATTCATAAG+TGG | - | Chr3:48743036-48743055 | None:intergenic | 30.0% | |
| TGGGAGAAAATTGAGTTATT+TGG | + | Chr3:48743112-48743131 | MsG0380014054.01.T01:CDS | 30.0% | |
| TGTCTAAATTTCGGAGTAAA+TGG | - | Chr3:48744090-48744109 | None:intergenic | 30.0% | |
| TGTTCATATCTCTCATCAAA+AGG | - | Chr3:48744604-48744623 | None:intergenic | 30.0% | |
| TTTGAACAGCCTGTTATAAT+AGG | + | Chr3:48744751-48744770 | MsG0380014054.01.T01:CDS | 30.0% | |
| ! | ACTTGTCTAAAACTACCTAT+AGG | + | Chr3:48744262-48744281 | MsG0380014054.01.T01:CDS | 30.0% |
| ! | ATTTTCTCCCATGAACTATT+TGG | - | Chr3:48743103-48743122 | None:intergenic | 30.0% |
| ! | CCCTTCCAATATTTTTCTAT+TGG | + | Chr3:48743503-48743522 | MsG0380014054.01.T01:CDS | 30.0% |
| ! | CGATCTAAAACTTGAGATAA+TGG | - | Chr3:48743065-48743084 | None:intergenic | 30.0% |
| ! | TTCAAAGATTTTGTCTAGAC+AGG | + | Chr3:48744435-48744454 | MsG0380014054.01.T01:CDS | 30.0% |
| ! | TTCAGAAAACACAAGTTTTC+TGG | - | Chr3:48744635-48744654 | None:intergenic | 30.0% |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | - | Chr3:48744254-48744273 | None:intergenic | 30.0% |
| ! | TTTTCTCCCATGAACTATTT+GGG | - | Chr3:48743102-48743121 | None:intergenic | 30.0% |
| ! | TTTTGATGAGAGATATGAAC+AGG | + | Chr3:48744603-48744622 | MsG0380014054.01.T01:CDS | 30.0% |
| !! | ATGCATGCAAGTATTTTTGT+TGG | - | Chr3:48743789-48743808 | None:intergenic | 30.0% |
| !!! | AATTTTTTAGCACTGAATCG+AGG | + | Chr3:48743392-48743411 | MsG0380014054.01.T01:CDS | 30.0% |
| !!! | ACCACTTATGAATCGTTTTT+TGG | + | Chr3:48743032-48743051 | MsG0380014054.01.T01:CDS | 30.0% |
| AAAACTACCTATAGGTGGTA+GGG | + | Chr3:48744270-48744289 | MsG0380014054.01.T01:CDS | 35.0% | |
| AAACTTCCTTCCTTTGAATC+TGG | - | Chr3:48745137-48745156 | None:intergenic | 35.0% | |
| AAATTGAGTTATTTGGGTCC+TGG | + | Chr3:48743119-48743138 | MsG0380014054.01.T01:CDS | 35.0% | |
| AACTATTTGGGTCAATGGAT+TGG | - | Chr3:48743090-48743109 | None:intergenic | 35.0% | |
| AGAAAGACTTCCAGATTCAA+AGG | + | Chr3:48745124-48745143 | MsG0380014054.01.T01:CDS | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | + | Chr3:48744310-48744329 | MsG0380014054.01.T01:CDS | 35.0% | |
| ATATGGTCTTCAACCCATTA+GGG | + | Chr3:48744491-48744510 | MsG0380014054.01.T01:CDS | 35.0% | |
| ATGCTCGATAAAAGGAATCA+GGG | - | Chr3:48743534-48743553 | None:intergenic | 35.0% | |
| CAAAAATCCCAGGTTCATAA+AGG | + | Chr3:48743809-48743828 | MsG0380014054.01.T01:CDS | 35.0% | |
| CAGATATTGGAATGTTCACT+CGG | + | Chr3:48744538-48744557 | MsG0380014054.01.T01:CDS | 35.0% | |
| CATTGACCCAAATAGTTCAT+GGG | + | Chr3:48743093-48743112 | MsG0380014054.01.T01:CDS | 35.0% | |
| GCATCATTATGCTCGATAAA+AGG | - | Chr3:48743542-48743561 | None:intergenic | 35.0% | |
| GCATTTACCTTTATGAACCT+GGG | - | Chr3:48743819-48743838 | None:intergenic | 35.0% | |
| GCTCGTAATAATCTATCTTC+CGG | - | Chr3:48744208-48744227 | None:intergenic | 35.0% | |
| GGAATATTTGATGGAAGAAC+AGG | + | Chr3:48744721-48744740 | MsG0380014054.01.T01:CDS | 35.0% | |
| GGAATCAATGTAGGACTTAT+TGG | + | Chr3:48743230-48743249 | MsG0380014054.01.T01:CDS | 35.0% | |
| GTAAACAAACATCGAATCCA+TGG | + | Chr3:48744668-48744687 | MsG0380014054.01.T01:CDS | 35.0% | |
| TAAAACTACCTATAGGTGGT+AGG | + | Chr3:48744269-48744288 | MsG0380014054.01.T01:CDS | 35.0% | |
| TATGCTCGATAAAAGGAATC+AGG | - | Chr3:48743535-48743554 | None:intergenic | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | - | Chr3:48744297-48744316 | None:intergenic | 35.0% | |
| TGGATTCGATGTTTGTTTAC+TGG | - | Chr3:48744668-48744687 | None:intergenic | 35.0% | |
| ! | AGTTCCAACAATGCACTTTT+CGG | - | Chr3:48743621-48743640 | None:intergenic | 35.0% |
| ! | TGAATACTATATGGTAGCGA+CGG | + | Chr3:48743367-48743386 | MsG0380014054.01.T01:CDS | 35.0% |
| ! | TGTCTAAAACTACCTATAGG+TGG | + | Chr3:48744265-48744284 | MsG0380014054.01.T01:CDS | 35.0% |
| !! | AAGGGACAAATTTTAGCAGA+TGG | + | Chr3:48743845-48743864 | MsG0380014054.01.T01:CDS | 35.0% |
| !! | AATTGTGATTCTGGGATCTT+GGG | + | Chr3:48744117-48744136 | MsG0380014054.01.T01:CDS | 35.0% |
| !! | AGAAACAGGGGATATTTTAG+TGG | + | Chr3:48744141-48744160 | MsG0380014054.01.T01:CDS | 35.0% |
| !! | GATATGCCTTATTTGCAAGA+TGG | + | Chr3:48744457-48744476 | MsG0380014054.01.T01:CDS | 35.0% |
| !!! | AGCTAGAACCTGCTTTTTTT+TGG | - | Chr3:48744321-48744340 | None:intergenic | 35.0% |
| !!! | GAAACAGGGGATATTTTAGT+GGG | + | Chr3:48744142-48744161 | MsG0380014054.01.T01:CDS | 35.0% |
| AAAATACATGGACGTTCCAG+TGG | + | Chr3:48744814-48744833 | MsG0380014054.01.T01:CDS | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | + | Chr3:48744271-48744290 | MsG0380014054.01.T01:CDS | 40.0% | |
| AAAGTAGGTGATAAAGTGGC+CGG | + | Chr3:48744388-48744407 | MsG0380014054.01.T01:CDS | 40.0% | |
| AACAAGTGCATAATGTCCAC+TGG | - | Chr3:48744833-48744852 | None:intergenic | 40.0% | |
| ACAACAACCCCTTAAAGGAA+GGG | + | Chr3:48744855-48744874 | MsG0380014054.01.T01:CDS | 40.0% | |
| ACGAGCAATCGAAAAGATTC+TGG | - | Chr3:48745054-48745073 | None:intergenic | 40.0% | |
| AGACTTCCAGATTCAAAGGA+AGG | + | Chr3:48745128-48745147 | MsG0380014054.01.T01:CDS | 40.0% | |
| AGGAACAATACCTAAACCTG+TGG | + | Chr3:48745023-48745042 | MsG0380014054.01.T01:CDS | 40.0% | |
| ATATTTGAACCCGAGTATCC+GGG | + | Chr3:48744691-48744710 | MsG0380014054.01.T01:CDS | 40.0% | |
| CATTTGTCCAATTGACACCT+CGG | + | Chr3:48743205-48743224 | MsG0380014054.01.T01:CDS | 40.0% | |
| CCATGAACTATTTGGGTCAA+TGG | - | Chr3:48743095-48743114 | None:intergenic | 40.0% | |
| CCATTGACCCAAATAGTTCA+TGG | + | Chr3:48743092-48743111 | MsG0380014054.01.T01:CDS | 40.0% | |
| CGCATTTACCTTTATGAACC+TGG | - | Chr3:48743820-48743839 | None:intergenic | 40.0% | |
| GATATCCATCCTAGTCACTA+TGG | + | Chr3:48743179-48743198 | MsG0380014054.01.T01:CDS | 40.0% | |
| GATATGGTCTTCAACCCATT+AGG | + | Chr3:48744490-48744509 | MsG0380014054.01.T01:CDS | 40.0% | |
| GATATTTGAACCCGAGTATC+CGG | + | Chr3:48744690-48744709 | MsG0380014054.01.T01:CDS | 40.0% | |
| GGAAAGAGCGGAATATTTGA+TGG | + | Chr3:48744712-48744731 | MsG0380014054.01.T01:CDS | 40.0% | |
| GGAAGTCTTTCTCAGATACA+AGG | - | Chr3:48745116-48745135 | None:intergenic | 40.0% | |
| GGGTAAATTAACGCCTCAAA+TGG | + | Chr3:48744162-48744181 | MsG0380014054.01.T01:CDS | 40.0% | |
| GGTCTTCCATCTTGCAAATA+AGG | - | Chr3:48744466-48744485 | None:intergenic | 40.0% | |
| GTACTCGGAACTACGATTAT+TGG | + | Chr3:48745000-48745019 | MsG0380014054.01.T01:CDS | 40.0% | |
| GTTACACAACAACCCCTTAA+AGG | + | Chr3:48744850-48744869 | MsG0380014054.01.T01:CDS | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | - | Chr3:48744200-48744219 | None:intergenic | 40.0% | |
| TACTCGGGTTCAAATATCCA+TGG | - | Chr3:48744688-48744707 | None:intergenic | 40.0% | |
| TAGTGATTCTTTCAGGACCA+TGG | - | Chr3:48744045-48744064 | None:intergenic | 40.0% | |
| TATGGTCTTCAACCCATTAG+GGG | + | Chr3:48744492-48744511 | MsG0380014054.01.T01:CDS | 40.0% | |
| TCAAATATTCCGCTCTTTCC+CGG | - | Chr3:48744712-48744731 | None:intergenic | 40.0% | |
| TCAGAATTGTAACCTTCCCA+TGG | - | Chr3:48743929-48743948 | None:intergenic | 40.0% | |
| TCTAACTATTGCATGGGAAC+AGG | + | Chr3:48743460-48743479 | MsG0380014054.01.T01:CDS | 40.0% | |
| TGATGAGAGATATGAACAGG+AGG | + | Chr3:48744606-48744625 | MsG0380014054.01.T01:CDS | 40.0% | |
| TGTACTCATTAGTGAACGTC+TGG | + | Chr3:48743955-48743974 | MsG0380014054.01.T01:CDS | 40.0% | |
| TGTAGGACTTATTGGATCCT+TGG | + | Chr3:48743238-48743257 | MsG0380014054.01.T01:CDS | 40.0% | |
| TGTCCTACATTCATTCGTGA+GGG | - | Chr3:48744520-48744539 | None:intergenic | 40.0% | |
| TTGCATGCATCAAAAATCCC+AGG | + | Chr3:48743799-48743818 | MsG0380014054.01.T01:CDS | 40.0% | |
| TTGTTTCGCCCTTCCTTTAA+GGG | - | Chr3:48744866-48744885 | None:intergenic | 40.0% | |
| ! | ACCTTTATTTCCATGTCTCC+CGG | - | Chr3:48744410-48744429 | None:intergenic | 40.0% |
| ! | AGTAAATGGGCTTCTAGATG+TGG | - | Chr3:48744076-48744095 | None:intergenic | 40.0% |
| ! | GAAAAGTGCATTGTTGGAAC+TGG | + | Chr3:48743620-48743639 | MsG0380014054.01.T01:CDS | 40.0% |
| ! | GAATACTATATGGTAGCGAC+GGG | + | Chr3:48743368-48743387 | MsG0380014054.01.T01:CDS | 40.0% |
| ! | TGGGTTGAAGACCATATCAA+CGG | - | Chr3:48744488-48744507 | None:intergenic | 40.0% |
| !! | AAAGCTCGTCAAGAAGTACT+CGG | + | Chr3:48744985-48745004 | MsG0380014054.01.T01:CDS | 40.0% |
| !! | AATGTTCACTCGGATTAGCT+GGG | + | Chr3:48744548-48744567 | MsG0380014054.01.T01:CDS | 40.0% |
| !! | GAATTGTGATTCTGGGATCT+TGG | + | Chr3:48744116-48744135 | MsG0380014054.01.T01:CDS | 40.0% |
| !!! | AACTGCTAGTTTTCGGATAC+GGG | + | Chr3:48743157-48743176 | MsG0380014054.01.T01:CDS | 40.0% |
| !!! | GAACTGCTAGTTTTCGGATA+CGG | + | Chr3:48743156-48743175 | MsG0380014054.01.T01:CDS | 40.0% |
| AACGATCTTTCCTGCGTGTT+CGG | - | Chr3:48743690-48743709 | None:intergenic | 45.0% | |
| AAGTAGGTGATAAAGTGGCC+GGG | + | Chr3:48744389-48744408 | MsG0380014054.01.T01:CDS | 45.0% | |
| AATCCTTGCGTGAATTGCCA+AGG | - | Chr3:48743258-48743277 | None:intergenic | 45.0% | |
| ACCTCGGAAGGAATCAATGT+AGG | + | Chr3:48743221-48743240 | MsG0380014054.01.T01:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | + | Chr3:48744222-48744241 | MsG0380014054.01.T01:CDS | 45.0% | |
| AGATGGAAGACCCGTTGATA+TGG | + | Chr3:48744474-48744493 | MsG0380014054.01.T01:CDS | 45.0% | |
| CAAATGCGTCCATAGTGACT+AGG | - | Chr3:48743191-48743210 | None:intergenic | 45.0% | |
| CACAACAACCCCTTAAAGGA+AGG | + | Chr3:48744854-48744873 | MsG0380014054.01.T01:CDS | 45.0% | |
| CGTTCGAGAACTACGATCTT+TGG | + | Chr3:48745071-48745090 | MsG0380014054.01.T01:CDS | 45.0% | |
| CTCGGAACTACGATTATTGG+AGG | + | Chr3:48745003-48745022 | MsG0380014054.01.T01:CDS | 45.0% | |
| CTGTCCTACATTCATTCGTG+AGG | - | Chr3:48744521-48744540 | None:intergenic | 45.0% | |
| CTTAAAGGAAGGGCGAAACA+AGG | + | Chr3:48744865-48744884 | MsG0380014054.01.T01:CDS | 45.0% | |
| CTTGTTTCGCCCTTCCTTTA+AGG | - | Chr3:48744867-48744886 | None:intergenic | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | + | Chr3:48744186-48744205 | MsG0380014054.01.T01:CDS | 45.0% | |
| GAGGATTCTTTCGCCATTTG+AGG | - | Chr3:48744178-48744197 | None:intergenic | 45.0% | |
| GCCGAGTTATTGATGTGAGA+TGG | + | Chr3:48744293-48744312 | MsG0380014054.01.T01:CDS | 45.0% | |
| GGGTTGAAGACCATATCAAC+GGG | - | Chr3:48744487-48744506 | None:intergenic | 45.0% | |
| GTACCCTCACGAATGAATGT+AGG | + | Chr3:48744514-48744533 | MsG0380014054.01.T01:CDS | 45.0% | |
| GTAGCTTATATGCCATGGGA+AGG | + | Chr3:48743914-48743933 | MsG0380014054.01.T01:CDS | 45.0% | |
| GTCAAGCAGTTCCTCTTTCT+CGG | + | Chr3:48743594-48743613 | MsG0380014054.01.T01:CDS | 45.0% | |
| GTGCATTGTTGGAACTGGAT+TGG | + | Chr3:48743625-48743644 | MsG0380014054.01.T01:CDS | 45.0% | |
| TGGGATCTTGGGTAGAAACA+GGG | + | Chr3:48744128-48744147 | MsG0380014054.01.T01:CDS | 45.0% | |
| TGTTTCGCCCTTCCTTTAAG+GGG | - | Chr3:48744865-48744884 | None:intergenic | 45.0% | |
| TTGAGTTATTTGGGTCCTGG+AGG | + | Chr3:48743122-48743141 | MsG0380014054.01.T01:CDS | 45.0% | |
| TTGGCAATTCACGCAAGGAT+TGG | + | Chr3:48743257-48743276 | MsG0380014054.01.T01:CDS | 45.0% | |
| ! | AATTCTTGACGGTATCGAGC+TGG | - | Chr3:48743440-48743459 | None:intergenic | 45.0% |
| ! | ACTGAATCGAGGTATTCAGG+AGG | + | Chr3:48743403-48743422 | MsG0380014054.01.T01:CDS | 45.0% |
| ! | AGAACTACGATCTTTGGCTC+TGG | + | Chr3:48745077-48745096 | MsG0380014054.01.T01:CDS | 45.0% |
| ! | AGCACTGAATCGAGGTATTC+AGG | + | Chr3:48743400-48743419 | MsG0380014054.01.T01:CDS | 45.0% |
| ! | ATTCCTTCCGAGGTGTCAAT+TGG | - | Chr3:48743215-48743234 | None:intergenic | 45.0% |
| !! | AAAGATTCTGGAGCATCCAC+AGG | - | Chr3:48745042-48745061 | None:intergenic | 45.0% |
| !! | GAATGTTCACTCGGATTAGC+TGG | + | Chr3:48744547-48744566 | MsG0380014054.01.T01:CDS | 45.0% |
| !! | GATTCAGGTATCGACCTCAA+AGG | + | Chr3:48744237-48744256 | MsG0380014054.01.T01:CDS | 45.0% |
| !! | TCCTACATTGATTCCTTCCG+AGG | - | Chr3:48743225-48743244 | None:intergenic | 45.0% |
| AAACAAGGAGGACAACGGGT+AGG | + | Chr3:48744880-48744899 | MsG0380014054.01.T01:CDS | 50.0% | |
| AAAGGAAGGGCGAAACAAGG+AGG | + | Chr3:48744868-48744887 | MsG0380014054.01.T01:CDS | 50.0% | |
| AGCGGGAACTCCTGAATCTA+AGG | - | Chr3:48743663-48743682 | None:intergenic | 50.0% | |
| CAGACTCATGTGACAAGCCA+TGG | + | Chr3:48744025-48744044 | MsG0380014054.01.T01:CDS | 50.0% | |
| CTGGGATCTTGGGTAGAAAC+AGG | + | Chr3:48744127-48744146 | MsG0380014054.01.T01:CDS | 50.0% | |
| GATCCTTGGCAATTCACGCA+AGG | + | Chr3:48743252-48743271 | MsG0380014054.01.T01:CDS | 50.0% | |
| GCCGGGAGACATGGAAATAA+AGG | + | Chr3:48744406-48744425 | MsG0380014054.01.T01:CDS | 50.0% | |
| GGACTTTCTATAGACCCCCA+AGG | - | Chr3:48743284-48743303 | None:intergenic | 50.0% | |
| GGGATCTTGGGTAGAAACAG+GGG | + | Chr3:48744129-48744148 | MsG0380014054.01.T01:CDS | 50.0% | |
| GGTAGGCGAAATGGAGGTTT+GGG | + | Chr3:48744897-48744916 | MsG0380014054.01.T01:CDS | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | - | Chr3:48744197-48744216 | None:intergenic | 50.0% | |
| TGCGTCCATAGTGACTAGGA+TGG | - | Chr3:48743187-48743206 | None:intergenic | 50.0% | |
| TGTCCAATTGACACCTCGGA+AGG | + | Chr3:48743209-48743228 | MsG0380014054.01.T01:CDS | 50.0% | |
| TTTGGGTCCTGGAGGATTGA+CGG | + | Chr3:48743130-48743149 | MsG0380014054.01.T01:CDS | 50.0% | |
| ! | AACTGGATTGGAACGCCAAG+TGG | + | Chr3:48743637-48743656 | MsG0380014054.01.T01:CDS | 50.0% |
| ! | CACTTTTCGGACCGAGAAAG+AGG | - | Chr3:48743608-48743627 | None:intergenic | 50.0% |
| ! | CGGTCCGAAAAGTGCATTGT+TGG | + | Chr3:48743614-48743633 | MsG0380014054.01.T01:CDS | 50.0% |
| ! | CTCCTGAATCTAAGGCCACT+TGG | - | Chr3:48743655-48743674 | None:intergenic | 50.0% |
| ! | TCTGGAGCATCCACAGGTTT+AGG | - | Chr3:48745036-48745055 | None:intergenic | 50.0% |
| !! | ATTCGTGAGGGTACCCCTAA+TGG | - | Chr3:48744508-48744527 | None:intergenic | 50.0% |
| !! | TCACGCAAGGATTGGTCCTT+GGG | + | Chr3:48743265-48743284 | MsG0380014054.01.T01:CDS | 50.0% |
| !! | TTCACGCAAGGATTGGTCCT+TGG | + | Chr3:48743264-48743283 | MsG0380014054.01.T01:CDS | 50.0% |
| !! | TTCGTGAGGGTACCCCTAAT+GGG | - | Chr3:48744507-48744526 | None:intergenic | 50.0% |
| ACAACGGGTAGGCGAAATGG+AGG | + | Chr3:48744891-48744910 | MsG0380014054.01.T01:CDS | 55.0% | |
| AGGACAACGGGTAGGCGAAA+TGG | + | Chr3:48744888-48744907 | MsG0380014054.01.T01:CDS | 55.0% | |
| GATAAAGTGGCCGGGAGACA+TGG | + | Chr3:48744397-48744416 | MsG0380014054.01.T01:CDS | 55.0% | |
| GGCGAAACAAGGAGGACAAC+GGG | + | Chr3:48744876-48744895 | MsG0380014054.01.T01:CDS | 55.0% | |
| GGGCGAAACAAGGAGGACAA+CGG | + | Chr3:48744875-48744894 | MsG0380014054.01.T01:CDS | 55.0% | |
| GGGTAGGCGAAATGGAGGTT+TGG | + | Chr3:48744896-48744915 | MsG0380014054.01.T01:CDS | 55.0% | |
| GTTGGCGGTGAACTCGCTTT+GGG | + | Chr3:48743878-48743897 | MsG0380014054.01.T01:CDS | 55.0% | |
| TCCGCTCTTTCCCGGATACT+CGG | - | Chr3:48744704-48744723 | None:intergenic | 55.0% | |
| TCCTGCGTGTTCGGCTATAG+CGG | - | Chr3:48743681-48743700 | None:intergenic | 55.0% | |
| TGTTGGCGGTGAACTCGCTT+TGG | + | Chr3:48743877-48743896 | MsG0380014054.01.T01:CDS | 55.0% | |
| TTGGGTCCTGGAGGATTGAC+GGG | + | Chr3:48743131-48743150 | MsG0380014054.01.T01:CDS | 55.0% | |
| ! | CGCCAAGTGGCCTTAGATTC+AGG | + | Chr3:48743650-48743669 | MsG0380014054.01.T01:CDS | 55.0% |
| !! | ACGCAAGGATTGGTCCTTGG+GGG | + | Chr3:48743267-48743286 | MsG0380014054.01.T01:CDS | 55.0% |
| !! | CACGCAAGGATTGGTCCTTG+GGG | + | Chr3:48743266-48743285 | MsG0380014054.01.T01:CDS | 55.0% |
| !! | GATGGTGCTGCTACTGTTGG+CGG | + | Chr3:48743863-48743882 | MsG0380014054.01.T01:CDS | 55.0% |
| !! | GCAGATGGTGCTGCTACTGT+TGG | + | Chr3:48743860-48743879 | MsG0380014054.01.T01:CDS | 55.0% |
| !!! | CGGGGCGAACTGCTAGTTTT+CGG | + | Chr3:48743150-48743169 | MsG0380014054.01.T01:CDS | 55.0% |
| AATGGAGGTTTGGGCGCTCG+AGG | + | Chr3:48744906-48744925 | MsG0380014054.01.T01:CDS | 60.0% | |
| ACTCGGCCCCTACCACCTAT+AGG | - | Chr3:48744280-48744299 | None:intergenic | 60.0% | |
| ATGGAGGTTTGGGCGCTCGA+GGG | + | Chr3:48744907-48744926 | MsG0380014054.01.T01:CDS | 60.0% | |
| CCCGAGTATCCGGGAAAGAG+CGG | + | Chr3:48744700-48744719 | MsG0380014054.01.T01:CDS | 60.0% | |
| CCGCTCTTTCCCGGATACTC+GGG | - | Chr3:48744703-48744722 | None:intergenic | 60.0% | |
| CCTGCGTGTTCGGCTATAGC+GGG | - | Chr3:48743680-48743699 | None:intergenic | 60.0% | |
| TGGGTCCTGGAGGATTGACG+GGG | + | Chr3:48743132-48743151 | MsG0380014054.01.T01:CDS | 60.0% | |
| CCCGCTATAGCCGAACACGC+AGG | + | Chr3:48743677-48743696 | MsG0380014054.01.T01:CDS | 65.0% | |
| GTTCGCCCCGTCAATCCTCC+AGG | - | Chr3:48743140-48743159 | None:intergenic | 65.0% | |
| GTTTGGGCGCTCGAGGGGTT+CGG | + | Chr3:48744913-48744932 | MsG0380014054.01.T01:CDS | 65.0% | |
| TGGAGGTTTGGGCGCTCGAG+GGG | + | Chr3:48744908-48744927 | MsG0380014054.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48743008 | 48745158 | 48743008 | ID=MsG0380014054.01;Name=MsG0380014054.01 |
| Chr3 | mRNA | 48743008 | 48745158 | 48743008 | ID=MsG0380014054.01.T01;Parent=MsG0380014054.01;Name=MsG0380014054.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|716 |
| Chr3 | exon | 48743008 | 48745158 | 48743008 | ID=MsG0380014054.01.T01:exon:8546;Parent=MsG0380014054.01.T01 |
| Chr3 | CDS | 48743008 | 48745158 | 48743008 | ID=MsG0380014054.01.T01:cds;Parent=MsG0380014054.01.T01 |
| Gene Sequence |
| Protein sequence |
