AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014024.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014024.01.T01 MTR_4g051270 60.550 218 20 2 17 168 88 305 1.83e-78 243
MsG0380014024.01.T01 MTR_4g051270 81.429 70 13 0 173 242 387 456 8.29e-31 118
MsG0380014024.01.T01 MTR_6g055010 60.550 218 20 2 17 168 88 305 2.87e-78 243
MsG0380014024.01.T01 MTR_6g055010 81.429 70 13 0 173 242 406 475 9.45e-31 119
MsG0380014024.01.T01 MTR_7g021770 60.092 218 21 2 17 168 88 305 1.31e-77 242
MsG0380014024.01.T01 MTR_7g021770 80.000 70 14 0 173 242 406 475 7.91e-30 116
MsG0380014024.01.T01 MTR_7g117930 60.092 218 21 2 17 168 88 305 1.72e-77 241
MsG0380014024.01.T01 MTR_7g117930 81.429 70 13 0 173 242 406 475 1.16e-30 118
MsG0380014024.01.T01 MTR_0002s0660 56.881 218 28 2 17 168 88 305 1.53e-72 229
MsG0380014024.01.T01 MTR_0002s0660 72.857 70 19 0 173 242 406 475 1.51e-25 104
MsG0380014024.01.T01 MTR_7g033770 79.612 103 21 0 17 119 88 190 4.14e-52 167
MsG0380014024.01.T01 MTR_5g075460 85.333 75 11 0 34 108 89 163 1.81e-38 134
MsG0380014024.01.T01 MTR_3g035490 78.667 75 16 0 45 119 1 75 1.47e-33 120
MsG0380014024.01.T01 MTR_0002s0100 78.667 75 16 0 45 119 1 75 2.33e-33 120
MsG0380014024.01.T01 MTR_3g035680 81.429 70 13 0 173 242 108 177 9.50e-33 117
MsG0380014024.01.T01 MTR_2176s0010 96.429 56 2 0 113 168 1 56 2.04e-32 118
MsG0380014024.01.T01 MTR_2176s0010 70.588 68 20 0 173 240 157 224 4.96e-26 102
MsG0380014024.01.T01 MTR_5g087240 77.273 66 15 0 177 242 610 675 5.11e-24 100
MsG0380014024.01.T01 MTR_7g084780 84.848 33 5 0 196 228 37 69 3.01e-13 63.5
MsG0380014024.01.T01 MTR_1g059860 58.824 51 21 0 102 152 155 205 6.14e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014024.01.T01 ATCG00490 57.339 218 27 2 17 168 88 305 4.41e-73 230
MsG0380014024.01.T01 ATCG00490 70.000 70 21 0 173 242 406 475 7.71e-25 102
MsG0380014024.01.T01 AT2G07732 82.609 46 8 0 100 145 69 114 8.63e-20 82.0

Find 66 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGTAGGTAATGTATT+TGG 0.076014 3:+48677022 MsG0380014024.01.T01:CDS
CAAATATGGACGTCCCCTAT+TGG 0.303463 3:+48677156 MsG0380014024.01.T01:CDS
AGAGATAAATTGAACAAATA+TGG 0.306170 3:+48677142 MsG0380014024.01.T01:CDS
AGCTGTATTTGCTAGAGAAT+TGG 0.311976 3:+48677420 MsG0380014024.01.T01:CDS
TAACAGAACTTTCTTCAAAA+AGG 0.313816 3:-48676985 None:intergenic
TAGGTTTATAGTACCCCAAT+AGG 0.335599 3:-48677171 None:intergenic
ACCAGTCTTGATCGTTATAA+AGG 0.335616 3:+48676889 MsG0380014024.01.T01:CDS
CCATTGTAGGTAATGTATTT+GGG 0.341419 3:+48677023 MsG0380014024.01.T01:CDS
AAATATGGACGTCCCCTATT+GGG 0.350624 3:+48677157 MsG0380014024.01.T01:CDS
TCACAAGCAGCAGCTAATTC+AGG 0.373684 3:-48678014 None:intergenic
AGGTTTATAGTACCCCAATA+GGG 0.382038 3:-48677170 None:intergenic
TGAGTCTCTTCTCCAGCAAC+AGG 0.389709 3:-48676932 None:intergenic
TAGCTGCTGCTTGTGAAGTC+TGG 0.391463 3:+48678021 MsG0380014024.01.T01:CDS
AATCAAATAGTATCCATTGC+TGG 0.397304 3:-48678065 None:intergenic
AGCTAATTCAGGACTCCATT+TGG 0.412198 3:-48678003 None:intergenic
AGGTAATGTATTTGGGTTCA+AGG 0.415592 3:+48677030 MsG0380014024.01.T01:CDS
GCTCACTATTGCCGCGATAA+TGG 0.423190 3:+48677502 MsG0380014024.01.T01:CDS
GCTGTATTTGCTAGAGAATT+GGG 0.423593 3:+48677421 MsG0380014024.01.T01:CDS
AACATGTTTACCTCCATTGT+AGG 0.424333 3:+48677010 MsG0380014024.01.T01:CDS
GGCCTTGCGTGCTCTACGTC+TGG 0.426433 3:+48677051 MsG0380014024.01.T01:CDS
GTAATGCATGACTACTTAAC+CGG 0.438897 3:+48677454 MsG0380014024.01.T01:CDS
GACTCCATTTGGTAGCTTCA+CGG 0.453939 3:-48677992 None:intergenic
ACCACATCGAAACCTGTTGC+TGG 0.457467 3:+48676920 MsG0380014024.01.T01:CDS
CCGTAGCGAATCGGTAGCTC+TGG 0.464152 3:+48677908 MsG0380014024.01.T01:CDS
AGGAACTTTAGGACACCCTT+GGG 0.475375 3:+48677870 MsG0380014024.01.T01:intron
ATCAAATAGTATCCATTGCT+GGG 0.485651 3:-48678064 None:intergenic
TCAATTTATCTCTCTCAACT+TGG 0.492490 3:-48677132 None:intergenic
CACCTGGTGCCGTAGCGAAT+CGG 0.502259 3:+48677899 MsG0380014024.01.T01:CDS
GCTTATGTTAAAACTTTCCA+AGG 0.502903 3:+48677094 MsG0380014024.01.T01:CDS
TACCGATTCGCTACGGCACC+AGG 0.503241 3:-48677901 None:intergenic
CCCAAATACATTACCTACAA+TGG 0.508175 3:-48677023 None:intergenic
CAAATTTGAATTCCCAGCAA+TGG 0.508854 3:+48678052 MsG0380014024.01.T01:CDS
CACCCTTGGGGAAATGCACC+TGG 0.521465 3:+48677883 MsG0380014024.01.T01:CDS
GAGGAACTTTAGGACACCCT+TGG 0.524326 3:+48677869 MsG0380014024.01.T01:intron
TTATCCGTGAAGCTACCAAA+TGG 0.532937 3:+48677988 MsG0380014024.01.T01:CDS
TCCTTTATAACGATCAAGAC+TGG 0.551429 3:-48676890 None:intergenic
GGATTCCGTGAGGAGGACCT+TGG 0.553871 3:-48677111 None:intergenic
CACCAGGTGCATTTCCCCAA+GGG 0.564366 3:-48677885 None:intergenic
ATGTGTACAAGCTCGTAATG+AGG 0.569123 3:+48677935 MsG0380014024.01.T01:CDS
TTCCAGACGTAGAGCACGCA+AGG 0.578153 3:-48677053 None:intergenic
GGTTTATAGTACCCCAATAG+GGG 0.580846 3:-48677169 None:intergenic
GCACCAGGTGCATTTCCCCA+AGG 0.582933 3:-48677886 None:intergenic
AATATGGACGTCCCCTATTG+GGG 0.585235 3:+48677158 MsG0380014024.01.T01:CDS
CAATAACTGCATGCATTGCA+CGG 0.599019 3:-48677543 None:intergenic
ACATTATTGAATGCTACTGC+GGG 0.600244 3:+48677373 MsG0380014024.01.T01:CDS
AAGTAGTCATGCATTACGAT+AGG 0.600342 3:-48677448 None:intergenic
TATTGATAGACAGAAAATCA+TGG 0.603413 3:+48677561 MsG0380014024.01.T01:CDS
TGTGTACAAGCTCGTAATGA+GGG 0.604683 3:+48677936 MsG0380014024.01.T01:CDS
AGTATTTGCAGTGAATCCAC+CGG 0.604695 3:-48677473 None:intergenic
ATTCACTGCAAATACTACCT+TGG 0.606582 3:+48677480 MsG0380014024.01.T01:CDS
GACATTATTGAATGCTACTG+CGG 0.606911 3:+48677372 MsG0380014024.01.T01:CDS
GGGACGTGATCTTGCTCGTG+AGG 0.610459 3:+48677956 MsG0380014024.01.T01:CDS
TGCTGCTTGTGAAGTCTGGA+AGG 0.612336 3:+48678025 MsG0380014024.01.T01:CDS
ACTTTCCAAGGTCCTCCTCA+CGG 0.616737 3:+48677106 MsG0380014024.01.T01:CDS
GGACGTGATCTTGCTCGTGA+GGG 0.620456 3:+48677957 MsG0380014024.01.T01:CDS
ATCAAGACTGGTAAGTCCAT+CGG 0.625313 3:-48676878 None:intergenic
ATGCATGACTACTTAACCGG+TGG 0.625393 3:+48677457 MsG0380014024.01.T01:CDS
AAATACATTACCTACAATGG+AGG 0.637677 3:-48677020 None:intergenic
TCAACTTGGATTCCGTGAGG+AGG 0.638325 3:-48677118 None:intergenic
ATCGCGGCAATAGTGAGCCA+AGG 0.642206 3:-48677497 None:intergenic
CTCTCAACTTGGATTCCGTG+AGG 0.676911 3:-48677121 None:intergenic
TCCAGCAACAGGTTTCGATG+TGG 0.689792 3:-48676921 None:intergenic
CCAGAGCTACCGATTCGCTA+CGG 0.692443 3:-48677908 None:intergenic
GAAGAAGTAGACCATTATCG+CGG 0.720621 3:-48677513 None:intergenic
GGAACTTTAGGACACCCTTG+GGG 0.727359 3:+48677871 MsG0380014024.01.T01:intron
TAACTGCATGCATTGCACGG+TGG 0.746593 3:-48677540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGATAAATTGAACAAATA+TGG + Chr3:48677142-48677161 MsG0380014024.01.T01:CDS 20.0%
! TAACAGAACTTTCTTCAAAA+AGG - Chr3:48676988-48677007 None:intergenic 25.0%
! TATTGATAGACAGAAAATCA+TGG + Chr3:48677561-48677580 MsG0380014024.01.T01:CDS 25.0%
!!! AAAGTTTTAACATAAGCAAC+GGG - Chr3:48677091-48677110 None:intergenic 25.0%
!!! GAAAGTTTTAACATAAGCAA+CGG - Chr3:48677092-48677111 None:intergenic 25.0%
AAATACATTACCTACAATGG+AGG - Chr3:48677023-48677042 None:intergenic 30.0%
ACTTTCTTCAAAAAGGTCTA+AGG - Chr3:48676981-48677000 None:intergenic 30.0%
AGAATCATCTCCAAATATCT+CGG - Chr3:48677833-48677852 None:intergenic 30.0%
ATTGAAAAAGATAGAAGTCG+CGG + Chr3:48677719-48677738 MsG0380014024.01.T01:intron 30.0%
CCATTGTAGGTAATGTATTT+GGG + Chr3:48677023-48677042 MsG0380014024.01.T01:CDS 30.0%
CTGTGCTTTATAAATAGCTT+CGG - Chr3:48677330-48677349 None:intergenic 30.0%
CTTTCTTCAAAAAGGTCTAA+GGG - Chr3:48676980-48676999 None:intergenic 30.0%
GATGATTCTGTACTTCAATT+CGG + Chr3:48677844-48677863 MsG0380014024.01.T01:intron 30.0%
GCTTATGTTAAAACTTTCCA+AGG + Chr3:48677094-48677113 MsG0380014024.01.T01:CDS 30.0%
GGTTTATCCGCTAAAAATTA+CGG + Chr3:48677198-48677217 MsG0380014024.01.T01:intron 30.0%
TCAATTTATCTCTCTCAACT+TGG - Chr3:48677135-48677154 None:intergenic 30.0%
TCCATTGTAGGTAATGTATT+TGG + Chr3:48677022-48677041 MsG0380014024.01.T01:CDS 30.0%
! GTTCACATTTTCATCATCTT+TGG - Chr3:48677264-48677283 None:intergenic 30.0%
! TTTAGCGGATAAACCAATTT+AGG - Chr3:48677193-48677212 None:intergenic 30.0%
!! AAGTTTTAACATAAGCAACG+GGG - Chr3:48677090-48677109 None:intergenic 30.0%
!! TCCTTTGATTTCACCATTTT+CGG - Chr3:48677354-48677373 None:intergenic 30.0%
!!! GTATTTTTTTCACTCAGGAT+TGG + Chr3:48677741-48677760 MsG0380014024.01.T01:intron 30.0%
AACATGTTTACCTCCATTGT+AGG + Chr3:48677010-48677029 MsG0380014024.01.T01:CDS 35.0%
AAGTAGTCATGCATTACGAT+AGG - Chr3:48677451-48677470 None:intergenic 35.0%
ACATTATTGAATGCTACTGC+GGG + Chr3:48677373-48677392 MsG0380014024.01.T01:CDS 35.0%
ACCAGTCTTGATCGTTATAA+AGG + Chr3:48676889-48676908 MsG0380014024.01.T01:CDS 35.0%
AGGTTTATAGTACCCCAATA+GGG - Chr3:48677173-48677192 None:intergenic 35.0%
ATTCACTGCAAATACTACCT+TGG + Chr3:48677480-48677499 MsG0380014024.01.T01:CDS 35.0%
CAAATTTGAATTCCCAGCAA+TGG + Chr3:48678052-48678071 MsG0380014024.01.T01:CDS 35.0%
CCCAAATACATTACCTACAA+TGG - Chr3:48677026-48677045 None:intergenic 35.0%
CGAAGCTATTTATAAAGCAC+AGG + Chr3:48677328-48677347 MsG0380014024.01.T01:intron 35.0%
GACATTATTGAATGCTACTG+CGG + Chr3:48677372-48677391 MsG0380014024.01.T01:CDS 35.0%
GGAGAAAGGGATATTACTTT+AGG + Chr3:48677668-48677687 MsG0380014024.01.T01:intron 35.0%
GTAATGCATGACTACTTAAC+CGG + Chr3:48677454-48677473 MsG0380014024.01.T01:CDS 35.0%
TACTGTAGTAGGTAAATGGA+AGG + Chr3:48677647-48677666 MsG0380014024.01.T01:intron 35.0%
TAGGTAAATGGAAGGAGAAA+GGG + Chr3:48677655-48677674 MsG0380014024.01.T01:intron 35.0%
TAGGTTTATAGTACCCCAAT+AGG - Chr3:48677174-48677193 None:intergenic 35.0%
TCCTTTATAACGATCAAGAC+TGG - Chr3:48676893-48676912 None:intergenic 35.0%
! AGCTGTATTTGCTAGAGAAT+TGG + Chr3:48677420-48677439 MsG0380014024.01.T01:CDS 35.0%
! AGGTAATGTATTTGGGTTCA+AGG + Chr3:48677030-48677049 MsG0380014024.01.T01:CDS 35.0%
! GCTGTATTTGCTAGAGAATT+GGG + Chr3:48677421-48677440 MsG0380014024.01.T01:CDS 35.0%
! GGGGTACTATAAACCTAAAT+TGG + Chr3:48677177-48677196 MsG0380014024.01.T01:intron 35.0%
!! TGCTCTACCGTAATTTTTAG+CGG - Chr3:48677208-48677227 None:intergenic 35.0%
AAATATGGACGTCCCCTATT+GGG + Chr3:48677157-48677176 MsG0380014024.01.T01:CDS 40.0%
AGCAGTTATGAATGTCTACG+CGG + Chr3:48677224-48677243 MsG0380014024.01.T01:intron 40.0%
AGCTAATTCAGGACTCCATT+TGG - Chr3:48678006-48678025 None:intergenic 40.0%
AGTATTTGCAGTGAATCCAC+CGG - Chr3:48677476-48677495 None:intergenic 40.0%
ATGTGTACAAGCTCGTAATG+AGG + Chr3:48677935-48677954 MsG0380014024.01.T01:CDS 40.0%
CAATAACTGCATGCATTGCA+CGG - Chr3:48677546-48677565 None:intergenic 40.0%
CTGGTACTGTAGTAGGTAAA+TGG + Chr3:48677643-48677662 MsG0380014024.01.T01:intron 40.0%
CTTCGGCACAAATAAGAAAC+GGG - Chr3:48677313-48677332 None:intergenic 40.0%
GAAGAAGTAGACCATTATCG+CGG - Chr3:48677516-48677535 None:intergenic 40.0%
GATTCTGTACTTCAATTCGG+TGG + Chr3:48677847-48677866 MsG0380014024.01.T01:intron 40.0%
GCCGAAAATGGTGAAATCAA+AGG + Chr3:48677350-48677369 MsG0380014024.01.T01:intron 40.0%
GCTTCGGCACAAATAAGAAA+CGG - Chr3:48677314-48677333 None:intergenic 40.0%
GGTTTATAGTACCCCAATAG+GGG - Chr3:48677172-48677191 None:intergenic 40.0%
GTAGGTAAATGGAAGGAGAA+AGG + Chr3:48677654-48677673 MsG0380014024.01.T01:intron 40.0%
TATAAAGCACAGGCCGAAAA+TGG + Chr3:48677338-48677357 MsG0380014024.01.T01:intron 40.0%
TCTCCAACGCATAAATGGTT+GGG - Chr3:48677288-48677307 None:intergenic 40.0%
TGTGTACAAGCTCGTAATGA+GGG + Chr3:48677936-48677955 MsG0380014024.01.T01:CDS 40.0%
TTATCCGTGAAGCTACCAAA+TGG + Chr3:48677988-48678007 MsG0380014024.01.T01:CDS 40.0%
!! TCAGGATTGGTTTCTTTACC+TGG + Chr3:48677754-48677773 MsG0380014024.01.T01:intron 40.0%
!!! TCGCGGTATTTTTTTCACTC+AGG + Chr3:48677736-48677755 MsG0380014024.01.T01:intron 40.0%
AATATGGACGTCCCCTATTG+GGG + Chr3:48677158-48677177 MsG0380014024.01.T01:CDS 45.0%
ACTCCCAACCATTTATGCGT+TGG + Chr3:48677282-48677301 MsG0380014024.01.T01:intron 45.0%
AGTTATGAATGTCTACGCGG+TGG + Chr3:48677227-48677246 MsG0380014024.01.T01:intron 45.0%
ATGCATGACTACTTAACCGG+TGG + Chr3:48677457-48677476 MsG0380014024.01.T01:CDS 45.0%
ATTCACGCTGGTACTGTAGT+AGG + Chr3:48677636-48677655 MsG0380014024.01.T01:intron 45.0%
CAAATATGGACGTCCCCTAT+TGG + Chr3:48677156-48677175 MsG0380014024.01.T01:CDS 45.0%
CTCTCCAACGCATAAATGGT+TGG - Chr3:48677289-48677308 None:intergenic 45.0%
CTTCGGGTGGTATTCATGTT+TGG + Chr3:48677791-48677810 MsG0380014024.01.T01:intron 45.0%
TCACAAGCAGCAGCTAATTC+AGG - Chr3:48678017-48678036 None:intergenic 45.0%
! AAAGCGTTACGTATGTCAGG+TGG + Chr3:48677606-48677625 MsG0380014024.01.T01:intron 45.0%
! CAATTCGGTGGAGGAACTTT+AGG + Chr3:48677859-48677878 MsG0380014024.01.T01:intron 45.0%
! GACTCCATTTGGTAGCTTCA+CGG - Chr3:48677995-48678014 None:intergenic 45.0%
! GCTAAAGCGTTACGTATGTC+AGG + Chr3:48677603-48677622 MsG0380014024.01.T01:intron 45.0%
! TCTGTACTTCAATTCGGTGG+AGG + Chr3:48677850-48677869 MsG0380014024.01.T01:intron 45.0%
!! AGGAACTTTAGGACACCCTT+GGG + Chr3:48677870-48677889 MsG0380014024.01.T01:intron 45.0%
ACCACATCGAAACCTGTTGC+TGG + Chr3:48676920-48676939 MsG0380014024.01.T01:CDS 50.0%
ACTTTCCAAGGTCCTCCTCA+CGG + Chr3:48677106-48677125 MsG0380014024.01.T01:CDS 50.0%
CCAAATATCTCGGTCAGAGC+AGG - Chr3:48677823-48677842 None:intergenic 50.0%
CCTGCTCTGACCGAGATATT+TGG + Chr3:48677820-48677839 MsG0380014024.01.T01:intron 50.0%
CTCTCAACTTGGATTCCGTG+AGG - Chr3:48677124-48677143 None:intergenic 50.0%
GCTCACTATTGCCGCGATAA+TGG + Chr3:48677502-48677521 MsG0380014024.01.T01:CDS 50.0%
GGGTCTCTCCAACGCATAAA+TGG - Chr3:48677293-48677312 None:intergenic 50.0%
GGTGGAGATCATATTCACGC+TGG + Chr3:48677624-48677643 MsG0380014024.01.T01:intron 50.0%
TAACTGCATGCATTGCACGG+TGG - Chr3:48677543-48677562 None:intergenic 50.0%
TCAACTTGGATTCCGTGAGG+AGG - Chr3:48677121-48677140 None:intergenic 50.0%
TCCAGCAACAGGTTTCGATG+TGG - Chr3:48676924-48676943 None:intergenic 50.0%
TGAATACCACCCGAAGCAAC+AGG - Chr3:48677787-48677806 None:intergenic 50.0%
TGAGTCTCTTCTCCAGCAAC+AGG - Chr3:48676935-48676954 None:intergenic 50.0%
! TAGCTGCTGCTTGTGAAGTC+TGG + Chr3:48678021-48678040 MsG0380014024.01.T01:CDS 50.0%
! TGCTGCTTGTGAAGTCTGGA+AGG + Chr3:48678025-48678044 MsG0380014024.01.T01:CDS 50.0%
! TGGTGTTCTGCCTGTTGCTT+CGG + Chr3:48677774-48677793 MsG0380014024.01.T01:intron 50.0%
!! GAGGAACTTTAGGACACCCT+TGG + Chr3:48677869-48677888 MsG0380014024.01.T01:intron 50.0%
!! GGAACTTTAGGACACCCTTG+GGG + Chr3:48677871-48677890 MsG0380014024.01.T01:intron 50.0%
ATCGCGGCAATAGTGAGCCA+AGG - Chr3:48677500-48677519 None:intergenic 55.0%
CACCAGGTGCATTTCCCCAA+GGG - Chr3:48677888-48677907 None:intergenic 55.0%
GAAGCAACAGGCAGAACACC+AGG - Chr3:48677775-48677794 None:intergenic 55.0%
GGACGTGATCTTGCTCGTGA+GGG + Chr3:48677957-48677976 MsG0380014024.01.T01:CDS 55.0%
TTCCAGACGTAGAGCACGCA+AGG - Chr3:48677056-48677075 None:intergenic 55.0%
! GGTGTTCTGCCTGTTGCTTC+GGG + Chr3:48677775-48677794 MsG0380014024.01.T01:intron 55.0%
!! CCAGAGCTACCGATTCGCTA+CGG - Chr3:48677911-48677930 None:intergenic 55.0%
CACCCTTGGGGAAATGCACC+TGG + Chr3:48677883-48677902 MsG0380014024.01.T01:CDS 60.0%
CCGTAGCGAATCGGTAGCTC+TGG + Chr3:48677908-48677927 MsG0380014024.01.T01:CDS 60.0%
GCACCAGGTGCATTTCCCCA+AGG - Chr3:48677889-48677908 None:intergenic 60.0%
GGATTCCGTGAGGAGGACCT+TGG - Chr3:48677114-48677133 None:intergenic 60.0%
GGGACGTGATCTTGCTCGTG+AGG + Chr3:48677956-48677975 MsG0380014024.01.T01:CDS 60.0%
! GTTCTGCCTGTTGCTTCGGG+TGG + Chr3:48677778-48677797 MsG0380014024.01.T01:intron 60.0%
!! CACCTGGTGCCGTAGCGAAT+CGG + Chr3:48677899-48677918 MsG0380014024.01.T01:CDS 60.0%
!! TACCGATTCGCTACGGCACC+AGG - Chr3:48677904-48677923 None:intergenic 60.0%
GGCCTTGCGTGCTCTACGTC+TGG + Chr3:48677051-48677070 MsG0380014024.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48676881 48678085 48676881 ID=MsG0380014024.01;Name=MsG0380014024.01
Chr3 mRNA 48676881 48678085 48676881 ID=MsG0380014024.01.T01;Parent=MsG0380014024.01;Name=MsG0380014024.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|242
Chr3 exon 48676881 48677179 48676881 ID=MsG0380014024.01.T01:exon:8538;Parent=MsG0380014024.01.T01
Chr3 exon 48677372 48677596 48677372 ID=MsG0380014024.01.T01:exon:8539;Parent=MsG0380014024.01.T01
Chr3 exon 48677881 48678085 48677881 ID=MsG0380014024.01.T01:exon:8540;Parent=MsG0380014024.01.T01
Chr3 CDS 48676881 48677179 48676881 ID=MsG0380014024.01.T01:cds;Parent=MsG0380014024.01.T01
Chr3 CDS 48677372 48677596 48677372 ID=MsG0380014024.01.T01:cds;Parent=MsG0380014024.01.T01
Chr3 CDS 48677881 48678085 48677881 ID=MsG0380014024.01.T01:cds;Parent=MsG0380014024.01.T01
Gene Sequence

>MsG0380014024.01.T01

ATGGACTTACCAGTCTTGATCGTTATAAAGGACGCTGCTACCACATCGAAACCTGTTGCTGGAGAAGAGACTCAATTTATTGCTTATGTAGCTTATCCCTTAGACCTTTTTGAAGAAAGTTCTGTTACTAACATGTTTACCTCCATTGTAGGTAATGTATTTGGGTTCAAGGCCTTGCGTGCTCTACGTCTGGAAGATTTGCGAATCCCCGTTGCTTATGTTAAAACTTTCCAAGGTCCTCCTCACGGAATCCAAGTTGAGAGAGATAAATTGAACAAATATGGACGTCCCCTATTGGGGACATTATTGAATGCTACTGCGGGCACAGTTGACGATATGATGAAAAGAGCTGTATTTGCTAGAGAATTGGGCGTGCCTATCGTAATGCATGACTACTTAACCGGTGGATTCACTGCAAATACTACCTTGGCTCACTATTGCCGCGATAATGGTCTACTTCTTCATATCCACCGTGCAATGCATGCAGTTATTGATAGACAGAAAATCATGGTATGCACTTTCGTGACACCCTTGGGGAAATGCACCTGGTGCCGTAGCGAATCGGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAAGCTACCAAATGGAGTCCTGAATTAGCTGCTGCTTGTGAAGTCTGGAAGGAGATCAAATTTGAATTCCCAGCAATGGATACTATTTGA

Protein sequence

>MsG0380014024.01.T01

MDLPVLIVIKDAATTSKPVAGEETQFIAYVAYPLDLFEESSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGTLLNATAGTVDDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKIMVCTFVTPLGKCTWCRSESVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI*