AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026510.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026510.01.T01 MTR_5g045590 99.259 405 3 0 36 440 1 405 0.0 824
MsG0580026510.01.T01 MTR_2g105270 52.706 425 153 5 55 439 31 447 8.68e-142 413
MsG0580026510.01.T01 MTR_2g105270 53.429 350 115 5 55 364 31 372 2.75e-107 324
MsG0580026510.01.T01 MTR_2g105270 51.642 335 114 5 55 349 31 357 1.05e-96 295
MsG0580026510.01.T01 MTR_5g005240 40.233 430 212 8 54 438 14 443 2.35e-95 294
MsG0580026510.01.T01 MTR_8g088670 39.651 401 183 7 67 438 50 420 9.89e-84 263
MsG0580026510.01.T01 MTR_1g040495 39.633 381 180 7 75 435 15 365 5.61e-80 252
MsG0580026510.01.T01 MTR_1g076210 41.371 394 183 7 66 435 16 385 7.79e-75 239
MsG0580026510.01.T01 MTR_1g093280 41.371 394 183 7 66 435 16 385 7.79e-75 239
MsG0580026510.01.T01 MTR_1g106065 34.988 423 227 8 57 438 3 418 3.81e-74 238
MsG0580026510.01.T01 MTR_8g094880 36.952 433 198 10 57 440 18 424 4.14e-74 238
MsG0580026510.01.T01 MTR_8g094905 36.952 433 198 10 57 440 18 424 4.14e-74 238
MsG0580026510.01.T01 MTR_7g096170 38.875 391 193 6 67 435 17 383 5.86e-71 229
MsG0580026510.01.T01 MTR_7g096170 40.678 354 165 5 67 399 17 346 5.16e-66 216
MsG0580026510.01.T01 MTR_8g088670 39.172 314 136 5 67 353 50 335 3.51e-60 200
MsG0580026510.01.T01 MTR_8g088670 40.000 310 131 5 67 349 50 331 4.19e-60 200
MsG0580026510.01.T01 MTR_7g096170 40.566 318 144 5 67 363 17 310 3.66e-54 183
MsG0580026510.01.T01 MTR_7g096170 39.850 266 135 4 171 435 45 286 1.95e-44 157
MsG0580026510.01.T01 MTR_1g040475 40.212 189 98 2 62 235 4 192 6.43e-33 124
MsG0580026510.01.T01 MTR_1g076220 34.052 232 91 5 211 438 54 227 5.15e-30 117
MsG0580026510.01.T01 MTR_1g093370 42.105 133 69 3 310 438 37 165 5.22e-24 98.6
MsG0580026510.01.T01 MTR_2g059110 46.753 77 41 0 66 142 8 84 3.90e-17 77.0
MsG0580026510.01.T01 MTR_2g100150 37.086 151 75 6 71 216 12 147 1.88e-14 71.2
MsG0580026510.01.T01 MTR_2g059120 53.968 63 29 0 80 142 20 82 2.95e-14 68.9
MsG0580026510.01.T01 MTR_1g040455 36.264 91 57 1 349 438 7 97 9.04e-14 67.4
MsG0580026510.01.T01 MTR_1g055050 45.556 90 48 1 171 260 50 138 4.09e-13 69.7
MsG0580026510.01.T02 MTR_5g045590 99.259 405 3 0 36 440 1 405 0.0 824
MsG0580026510.01.T02 MTR_2g105270 52.706 425 153 5 55 439 31 447 8.68e-142 413
MsG0580026510.01.T02 MTR_2g105270 53.429 350 115 5 55 364 31 372 2.75e-107 324
MsG0580026510.01.T02 MTR_2g105270 51.642 335 114 5 55 349 31 357 1.05e-96 295
MsG0580026510.01.T02 MTR_5g005240 40.233 430 212 8 54 438 14 443 2.35e-95 294
MsG0580026510.01.T02 MTR_8g088670 39.651 401 183 7 67 438 50 420 9.89e-84 263
MsG0580026510.01.T02 MTR_1g040495 39.633 381 180 7 75 435 15 365 5.61e-80 252
MsG0580026510.01.T02 MTR_1g076210 41.371 394 183 7 66 435 16 385 7.79e-75 239
MsG0580026510.01.T02 MTR_1g093280 41.371 394 183 7 66 435 16 385 7.79e-75 239
MsG0580026510.01.T02 MTR_1g106065 34.988 423 227 8 57 438 3 418 3.81e-74 238
MsG0580026510.01.T02 MTR_8g094880 36.952 433 198 10 57 440 18 424 4.14e-74 238
MsG0580026510.01.T02 MTR_8g094905 36.952 433 198 10 57 440 18 424 4.14e-74 238
MsG0580026510.01.T02 MTR_7g096170 38.875 391 193 6 67 435 17 383 5.86e-71 229
MsG0580026510.01.T02 MTR_7g096170 40.678 354 165 5 67 399 17 346 5.16e-66 216
MsG0580026510.01.T02 MTR_8g088670 39.172 314 136 5 67 353 50 335 3.51e-60 200
MsG0580026510.01.T02 MTR_8g088670 40.000 310 131 5 67 349 50 331 4.19e-60 200
MsG0580026510.01.T02 MTR_7g096170 40.566 318 144 5 67 363 17 310 3.66e-54 183
MsG0580026510.01.T02 MTR_7g096170 39.850 266 135 4 171 435 45 286 1.95e-44 157
MsG0580026510.01.T02 MTR_1g040475 40.212 189 98 2 62 235 4 192 6.43e-33 124
MsG0580026510.01.T02 MTR_1g076220 34.052 232 91 5 211 438 54 227 5.15e-30 117
MsG0580026510.01.T02 MTR_1g093370 42.105 133 69 3 310 438 37 165 5.22e-24 98.6
MsG0580026510.01.T02 MTR_2g059110 46.753 77 41 0 66 142 8 84 3.90e-17 77.0
MsG0580026510.01.T02 MTR_2g100150 37.086 151 75 6 71 216 12 147 1.88e-14 71.2
MsG0580026510.01.T02 MTR_2g059120 53.968 63 29 0 80 142 20 82 2.95e-14 68.9
MsG0580026510.01.T02 MTR_1g040455 36.264 91 57 1 349 438 7 97 9.04e-14 67.4
MsG0580026510.01.T02 MTR_1g055050 45.556 90 48 1 171 260 50 138 4.09e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026510.01.T01 AT2G03620 64.141 396 132 4 52 439 27 420 2.18e-163 467
MsG0580026510.01.T01 AT2G03620 64.141 396 132 4 52 439 27 420 2.18e-163 467
MsG0580026510.01.T01 AT1G80900 53.191 423 148 5 55 439 32 442 3.31e-147 427
MsG0580026510.01.T01 AT1G80900 53.191 423 148 5 55 439 32 442 3.31e-147 427
MsG0580026510.01.T01 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T01 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T01 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T01 AT5G09690 40.657 396 192 4 61 438 25 395 2.98e-89 277
MsG0580026510.01.T01 AT5G09690 40.657 396 192 4 61 438 14 384 3.05e-89 276
MsG0580026510.01.T01 AT3G19640 41.096 438 184 11 75 438 46 483 1.09e-88 278
MsG0580026510.01.T01 AT5G09690 41.144 367 173 4 61 410 25 365 2.58e-83 261
MsG0580026510.01.T01 AT3G58970 38.000 400 199 7 67 438 56 434 3.17e-78 249
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 14 318 1.28e-72 232
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 25 329 1.71e-72 232
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 25 329 1.71e-72 232
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 14 318 2.05e-72 231
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 25 329 2.20e-72 231
MsG0580026510.01.T01 AT5G09690 42.424 330 148 3 61 373 14 318 2.27e-72 231
MsG0580026510.01.T01 AT5G64560 39.440 393 183 6 75 438 26 392 1.91e-67 220
MsG0580026510.01.T01 AT5G09690 36.111 396 195 6 61 438 14 369 1.97e-67 219
MsG0580026510.01.T01 AT5G64560 40.111 359 161 5 75 405 26 358 2.17e-61 204
MsG0580026510.01.T01 AT5G09690 46.047 215 95 2 61 258 14 224 2.51e-53 180
MsG0580026510.01.T01 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T01 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T01 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T01 AT4G28580 31.579 399 214 6 64 438 44 407 2.89e-51 178
MsG0580026510.01.T01 AT5G09720 39.785 279 137 8 71 336 16 276 3.27e-47 164
MsG0580026510.01.T01 AT5G09720 39.785 279 137 8 71 336 16 276 3.27e-47 164
MsG0580026510.01.T02 AT2G03620 64.141 396 132 4 52 439 27 420 2.18e-163 467
MsG0580026510.01.T02 AT2G03620 64.141 396 132 4 52 439 27 420 2.18e-163 467
MsG0580026510.01.T02 AT1G80900 53.191 423 148 5 55 439 32 442 3.31e-147 427
MsG0580026510.01.T02 AT1G80900 53.191 423 148 5 55 439 32 442 3.31e-147 427
MsG0580026510.01.T02 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T02 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T02 AT1G16010 55.556 405 149 4 63 439 40 441 1.03e-146 425
MsG0580026510.01.T02 AT5G09690 40.657 396 192 4 61 438 25 395 2.98e-89 277
MsG0580026510.01.T02 AT5G09690 40.657 396 192 4 61 438 14 384 3.05e-89 276
MsG0580026510.01.T02 AT3G19640 41.096 438 184 11 75 438 46 483 1.09e-88 278
MsG0580026510.01.T02 AT5G09690 41.144 367 173 4 61 410 25 365 2.58e-83 261
MsG0580026510.01.T02 AT3G58970 38.000 400 199 7 67 438 56 434 3.17e-78 249
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 14 318 1.28e-72 232
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 25 329 1.71e-72 232
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 25 329 1.71e-72 232
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 14 318 2.05e-72 231
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 25 329 2.20e-72 231
MsG0580026510.01.T02 AT5G09690 42.424 330 148 3 61 373 14 318 2.27e-72 231
MsG0580026510.01.T02 AT5G64560 39.440 393 183 6 75 438 26 392 1.91e-67 220
MsG0580026510.01.T02 AT5G09690 36.111 396 195 6 61 438 14 369 1.97e-67 219
MsG0580026510.01.T02 AT5G64560 40.111 359 161 5 75 405 26 358 2.17e-61 204
MsG0580026510.01.T02 AT5G09690 46.047 215 95 2 61 258 14 224 2.51e-53 180
MsG0580026510.01.T02 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T02 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T02 AT5G09690 46.047 215 95 2 61 258 25 235 3.10e-53 180
MsG0580026510.01.T02 AT4G28580 31.579 399 214 6 64 438 44 407 2.89e-51 178
MsG0580026510.01.T02 AT5G09720 39.785 279 137 8 71 336 16 276 3.27e-47 164
MsG0580026510.01.T02 AT5G09720 39.785 279 137 8 71 336 16 276 3.27e-47 164

Find 46 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTCAAATTTGCTGTTT+TGG 0.227613 5:-38723908 None:intergenic
GCTGCCGTGGCAGGAGTATT+TGG 0.239167 5:+38723471 MsG0580026510.01.T01:CDS
TTCTGGATTCAATTTGGTTT+TGG 0.248178 5:+38723527 MsG0580026510.01.T01:CDS
CTACTCTTCTGGATTCAATT+TGG 0.249380 5:+38723521 MsG0580026510.01.T01:CDS
ACAAAGACACTATCTCTTTC+AGG 0.281309 5:+38724138 MsG0580026510.01.T01:intron
TACAGATTTGTAAAACTAAC+TGG 0.282764 5:-38723936 None:intergenic
TTGGAAATTGTTGTATTCAT+TGG 0.355034 5:+38724038 MsG0580026510.01.T01:intron
GAAGCATCTCAAACTTTATC+AGG 0.362455 5:-38723416 None:intergenic
CACGAGGCCATCATCGCGCT+TGG 0.385837 5:+38723795 MsG0580026510.01.T01:intron
GCAATATTTGCTGCCGTGGC+AGG 0.386204 5:+38723462 MsG0580026510.01.T01:CDS
TGGCATTATGATTGTTGAAA+TGG 0.404863 5:-38726306 None:intergenic
AATTTACATGTATCTGTTTG+TGG 0.422545 5:+38723709 MsG0580026510.01.T01:intron
CTTATGAGATTCTATTCTCC+TGG 0.431080 5:-38724106 None:intergenic
CATAATGCCATTGTTGCACT+TGG 0.444827 5:+38726319 MsG0580026510.01.T01:three_prime_UTR
CGCGCTTGGGCAACTATCCA+TGG 0.459145 5:+38723809 MsG0580026510.01.T01:intron
CACTACAAATAAGCTTATCT+AGG 0.471193 5:-38724001 None:intergenic
TGGCCTCGTGATTGATGAAA+TGG 0.471859 5:-38723782 None:intergenic
ACCAAAACAGCAAATTTGAA+TGG 0.472238 5:+38723907 MsG0580026510.01.T01:intron
GTATCTAAAATAGAATAGTA+AGG 0.476408 5:-38723586 None:intergenic
TGGTACAAGAAGAGCGGAGA+TGG 0.487598 5:-38723888 None:intergenic
TAGTTGCCCAAGCGCGATGA+TGG 0.500000 5:-38723802 None:intergenic
ACGAGGCCATCATCGCGCTT+GGG 0.500355 5:+38723796 MsG0580026510.01.T01:intron
ATCATGCAGGAGGAAGTTGA+TGG 0.542588 5:-38724063 None:intergenic
ATCTAGGAGTTATAAAACAT+TGG 0.547847 5:-38723985 None:intergenic
TGTGATTAAAGTTTACATCC+AGG 0.549163 5:+38724088 MsG0580026510.01.T01:intron
GGCCGCAATATTTGCTGCCG+TGG 0.550261 5:+38723458 MsG0580026510.01.T01:CDS
TAGTGTTAATTGAACCATGT+TGG 0.554002 5:+38724019 MsG0580026510.01.T01:intron
TCTTACAGCAGCCACATTGG+TGG 0.559109 5:+38723437 MsG0580026510.01.T01:CDS
GCCAAGTGAAAAGAAACACT+TGG 0.561439 5:-38726263 None:intergenic
CAAGAAGAGCGGAGATGGGA+AGG 0.567527 5:-38723883 None:intergenic
GCATCTCAAACTTTATCAGG+AGG 0.575972 5:-38723413 None:intergenic
GGTACAAGAAGAGCGGAGAT+GGG 0.577697 5:-38723887 None:intergenic
CTTTAATCACAGTATCATGC+AGG 0.577808 5:-38724076 None:intergenic
GCTTCTTACAGCAGCCACAT+TGG 0.587792 5:+38723434 MsG0580026510.01.T01:CDS
TTTATCAAAGATGACAGGAC+TGG 0.590869 5:+38723660 MsG0580026510.01.T01:three_prime_UTR
TAGTTGTCCAAGTGCAACAA+TGG 0.599044 5:-38726326 MsG0580026511.01.T01:CDS
TGACTAGTTCAAAATAACAC+GGG 0.611491 5:-38723856 None:intergenic
CATTCCAAATACTCCTGCCA+CGG 0.617993 5:-38723475 None:intergenic
AGAGATCATAGCATGCGCCA+TGG 0.622045 5:-38723826 None:intergenic
GAATACAACAATTTCCAACA+TGG 0.632017 5:-38724033 None:intergenic
TGCCACGGCAGCAAATATTG+CGG 0.632620 5:-38723460 None:intergenic
AGCCGTGTGAAAACAGCGCT+AGG 0.633253 5:-38723740 None:intergenic
AAATATTGCGGCCACCAATG+TGG 0.651735 5:-38723448 None:intergenic
ATGACTAGTTCAAAATAACA+CGG 0.657792 5:-38723857 None:intergenic
TAATCACAGTATCATGCAGG+AGG 0.666118 5:-38724073 None:intergenic
TCGCCATTTCATCAATCACG+AGG 0.694111 5:+38723779 MsG0580026510.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATATGTTATATTAATA+AGG + Chr5:38722492-38722511 MsG0580026510.01.T01:intron 10.0%
!!! ATGTTAATTTTTCTTTTTTT+GGG - Chr5:38725476-38725495 None:intergenic 10.0%
!! AAGAAAGAGAATTATAATTA+AGG - Chr5:38722685-38722704 None:intergenic 15.0%
!! AGCATACATAATATTTATAT+CGG + Chr5:38721570-38721589 MsG0580026510.01.T01:intron 15.0%
!! ATTATGTTGTCAATTTAATA+TGG + Chr5:38720630-38720649 MsG0580026510.01.T01:intron 15.0%
!! CATTATGTTTACATTAAAAT+TGG + Chr5:38722004-38722023 MsG0580026510.01.T01:intron 15.0%
!! TATATATATAAAGTGACAAA+AGG - Chr5:38723264-38723283 None:intergenic 15.0%
!! TTATGTTGTCAATTTAATAT+GGG + Chr5:38720631-38720650 MsG0580026510.01.T01:intron 15.0%
!!! AATTGTATATTTTCATGTTT+CGG + Chr5:38722386-38722405 MsG0580026510.01.T01:intron 15.0%
!!! AATTTTATTAAAAAGACATC+AGG - Chr5:38722327-38722346 None:intergenic 15.0%
!!! AGATTTTCTTAACATAAAAT+TGG + Chr5:38725847-38725866 MsG0580026510.01.T01:intron 15.0%
!!! CATGTTAATTTTTCTTTTTT+TGG - Chr5:38725477-38725496 None:intergenic 15.0%
!! AATGAATACTTGATTAGTAA+AGG + Chr5:38721042-38721061 MsG0580026510.01.T01:CDS 20.0%
!! AATTAACATGAAATTAAACG+AGG + Chr5:38725487-38725506 MsG0580026510.01.T01:intron 20.0%
!! ATCAGAAGAAAAAAAAATGA+TGG + Chr5:38724580-38724599 MsG0580026510.01.T01:intron 20.0%
!! ATGAATACTTGATTAGTAAA+GGG + Chr5:38721043-38721062 MsG0580026510.01.T01:CDS 20.0%
!! ATTGGAAATTCAAGTAAATA+TGG + Chr5:38722965-38722984 MsG0580026510.01.T01:CDS 20.0%
!! ATTTGAAAACAATCATTTGA+AGG - Chr5:38722848-38722867 None:intergenic 20.0%
!! CTAAATACATAATAAGTCAT+TGG + Chr5:38722430-38722449 MsG0580026510.01.T01:intron 20.0%
!! GTAACTTATATTTAGTTATC+AGG + Chr5:38722733-38722752 MsG0580026510.01.T01:intron 20.0%
!! TCTTCTGATATTGTTATATA+AGG - Chr5:38724569-38724588 None:intergenic 20.0%
!!! AATAGTCATATTTGTTGATA+TGG - Chr5:38724256-38724275 None:intergenic 20.0%
!!! AGATTTTCTCAACATAAAAT+TGG + Chr5:38723211-38723230 MsG0580026510.01.T01:CDS 20.0%
!!! ATAGTCATATTTGTTGATAT+GGG - Chr5:38724255-38724274 None:intergenic 20.0%
!!! ATTCCTTTTTTGTTGATTAA+AGG + Chr5:38721009-38721028 MsG0580026510.01.T01:intron 20.0%
!!! CTATAGTTGAATTTTTATTC+TGG - Chr5:38726159-38726178 None:intergenic 20.0%
!!! GTATCTAAAATAGAATAGTA+AGG - Chr5:38723589-38723608 None:intergenic 20.0%
!!! TTGTAAATTTTTTGTTTCTC+TGG - Chr5:38724964-38724983 None:intergenic 20.0%
!!! TTTGAAAGTATAGTCATATT+TGG - Chr5:38724220-38724239 None:intergenic 20.0%
! AAATATAAGTTACTAGTTGC+AGG - Chr5:38722726-38722745 None:intergenic 25.0%
! AAGTAAATATGGTAGTTCAA+CGG + Chr5:38722976-38722995 MsG0580026510.01.T01:CDS 25.0%
! AATTTACATGTATCTGTTTG+TGG + Chr5:38723709-38723728 MsG0580026510.01.T01:intron 25.0%
! ACAATCTCATTGATATTGAT+AGG + Chr5:38724369-38724388 MsG0580026510.01.T01:intron 25.0%
! AGAATCTTAACCTTTAATAG+AGG - Chr5:38725995-38726014 None:intergenic 25.0%
! AGGGAGAGAATATAATATTT+AGG + Chr5:38722248-38722267 MsG0580026510.01.T01:intron 25.0%
! ATCTAGGAGTTATAAAACAT+TGG - Chr5:38723988-38724007 None:intergenic 25.0%
! ATTACAAACTATGTAAACCA+GGG + Chr5:38725925-38725944 MsG0580026510.01.T01:intron 25.0%
! ATTGATGTCTTGTGAAAATA+TGG - Chr5:38722468-38722487 None:intergenic 25.0%
! ATTTATCCTTCTTCCATATT+AGG + Chr5:38721366-38721385 MsG0580026510.01.T01:CDS 25.0%
! CAACCTTTAATCAACAAAAA+AGG - Chr5:38721015-38721034 None:intergenic 25.0%
! CTTGAGAAGAGTTTATAAAT+AGG - Chr5:38725668-38725687 None:intergenic 25.0%
! GAAATCAGTAAGCAATTATA+TGG - Chr5:38721822-38721841 None:intergenic 25.0%
! GAAGAAGGATAAATGAATTT+CGG - Chr5:38721360-38721379 None:intergenic 25.0%
! GAATCTTAACCTTTAATAGA+GGG - Chr5:38725994-38726013 None:intergenic 25.0%
! TAAATGATTTAAGCTACTGA+GGG - Chr5:38725415-38725434 None:intergenic 25.0%
! TACAGATTTGTAAAACTAAC+TGG - Chr5:38723939-38723958 None:intergenic 25.0%
! TATATAAACTATGTAGACCA+CGG + Chr5:38723346-38723365 MsG0580026510.01.T01:intron 25.0%
! TATTACAAACTATGTAAACC+AGG + Chr5:38725924-38725943 MsG0580026510.01.T01:intron 25.0%
! TATTCAAAACCCTCTATTAA+AGG + Chr5:38725982-38726001 MsG0580026510.01.T01:intron 25.0%
! TCTCACAAAATTTATGAGAA+AGG + Chr5:38724617-38724636 MsG0580026510.01.T01:intron 25.0%
! TGAAAAATTTACAAGATTGC+AGG - Chr5:38722165-38722184 None:intergenic 25.0%
! TGAATACTTGATTAGTAAAG+GGG + Chr5:38721044-38721063 MsG0580026510.01.T01:CDS 25.0%
! TTAAATGATTTAAGCTACTG+AGG - Chr5:38725416-38725435 None:intergenic 25.0%
! TTCACTTTGATGAAAATAGA+AGG + Chr5:38722181-38722200 MsG0580026510.01.T01:intron 25.0%
! TTCTATAAATTGAGTGACTT+TGG - Chr5:38725257-38725276 None:intergenic 25.0%
! TTGAAAGTTAAGAGGAATAT+TGG + Chr5:38725016-38725035 MsG0580026510.01.T01:intron 25.0%
! TTGATATAAACGATGTTGTT+AGG + Chr5:38725139-38725158 MsG0580026510.01.T01:intron 25.0%
! TTGGAAATTGTTGTATTCAT+TGG + Chr5:38724038-38724057 MsG0580026510.01.T01:intron 25.0%
!! ATGACTAGTTCAAAATAACA+CGG - Chr5:38723860-38723879 None:intergenic 25.0%
!! ATTGGTAATTAACTGAGTAT+TGG + Chr5:38720932-38720951 MsG0580026510.01.T01:intron 25.0%
!! CATTTTCATTAAACATCCTA+TGG + Chr5:38722085-38722104 MsG0580026510.01.T01:intron 25.0%
!! TAGTCATATTTGTTGATATG+GGG - Chr5:38724254-38724273 None:intergenic 25.0%
!! TCATTTTCTCGACTTATTAT+CGG + Chr5:38720849-38720868 MsG0580026510.01.T01:intron 25.0%
!! TGATATCAGTGTTTGAATTT+TGG + Chr5:38722362-38722381 MsG0580026510.01.T01:intron 25.0%
!! TTCATAATTGTTTCTCAGTT+GGG + Chr5:38720582-38720601 MsG0580026510.01.T01:intron 25.0%
!! TTCATTGATAATATTCTTGC+TGG + Chr5:38723154-38723173 MsG0580026510.01.T01:intron 25.0%
!! TTGATTAGTTACAACGTTAA+AGG - Chr5:38725523-38725542 None:intergenic 25.0%
!! TTTCATAATTGTTTCTCAGT+TGG + Chr5:38720581-38720600 MsG0580026510.01.T01:intron 25.0%
!! TTTGTTTGTTGAAAGTTAAG+AGG + Chr5:38725008-38725027 MsG0580026510.01.T01:intron 25.0%
!! TTTTCAATCTATCTGTTACA+GGG + Chr5:38723378-38723397 MsG0580026510.01.T01:intron 25.0%
!! TTTTGTGATAGTAATAGACA+CGG - Chr5:38724675-38724694 None:intergenic 25.0%
!!! ACTATATTTTAGTCTAGACA+AGG - Chr5:38724853-38724872 None:intergenic 25.0%
!!! TACATGAGTATGATTTTAAC+AGG + Chr5:38721169-38721188 MsG0580026510.01.T01:CDS 25.0%
!!! TTTTTGTTGATTAAAGGTTG+TGG + Chr5:38721015-38721034 MsG0580026510.01.T01:intron 25.0%
AAAACAGTGTTTAGGCTTAA+CGG + Chr5:38722135-38722154 MsG0580026510.01.T01:intron 30.0%
AAGGTTAAGATTCTTCACAT+TGG + Chr5:38726001-38726020 MsG0580026510.01.T01:intron 30.0%
AAGTTAAGAGGAATATTGGA+TGG + Chr5:38725020-38725039 MsG0580026510.01.T01:intron 30.0%
AATCATTTAAACGACAAGAG+TGG + Chr5:38725426-38725445 MsG0580026510.01.T01:intron 30.0%
ACACACACATGTATAAACTA+TGG - Chr5:38724888-38724907 None:intergenic 30.0%
ACAGATTCAATGCAAAAATG+TGG - Chr5:38721968-38721987 None:intergenic 30.0%
ACCAAAACAGCAAATTTGAA+TGG + Chr5:38723907-38723926 MsG0580026510.01.T01:intron 30.0%
AGTAAATATGGTAGTTCAAC+GGG + Chr5:38722977-38722996 MsG0580026510.01.T01:CDS 30.0%
AGTTAAGAGGAATATTGGAT+GGG + Chr5:38725021-38725040 MsG0580026510.01.T01:intron 30.0%
ATAGTTTATACATGTGTGTG+TGG + Chr5:38724887-38724906 MsG0580026510.01.T01:intron 30.0%
ATATGAGTAGTGAAAAACTG+AGG - Chr5:38726046-38726065 None:intergenic 30.0%
ATGATCTTCCCTTTGAATTT+AGG + Chr5:38721855-38721874 MsG0580026510.01.T01:CDS 30.0%
ATTGAAAAGTTTATAGTCCG+TGG - Chr5:38723366-38723385 None:intergenic 30.0%
CAAGAATGGAGCATATATTT+GGG - Chr5:38724307-38724326 None:intergenic 30.0%
CACTACAAATAAGCTTATCT+AGG - Chr5:38724004-38724023 None:intergenic 30.0%
GAATACAACAATTTCCAACA+TGG - Chr5:38724036-38724055 None:intergenic 30.0%
GAGAACAATATACAATGCAA+TGG + Chr5:38721113-38721132 MsG0580026510.01.T01:CDS 30.0%
GAGAAGAGTTTATAAATAGG+AGG - Chr5:38725665-38725684 None:intergenic 30.0%
GATTTAGTCCCACATTATAT+AGG - Chr5:38725698-38725717 None:intergenic 30.0%
GGATAAAAATTGATCAGGAT+GGG + Chr5:38721253-38721272 MsG0580026510.01.T01:CDS 30.0%
GTCTTGGATAAAAATTGATC+AGG + Chr5:38721248-38721267 MsG0580026510.01.T01:CDS 30.0%
TACTAATCCTTAATACCATG+AGG - Chr5:38725315-38725334 None:intergenic 30.0%
TAGTGTTAATTGAACCATGT+TGG + Chr5:38724019-38724038 MsG0580026510.01.T01:intron 30.0%
TCAAGAATGGAGCATATATT+TGG - Chr5:38724308-38724327 None:intergenic 30.0%
TCAATGAAGAAAAGCAATGT+CGG - Chr5:38723142-38723161 None:intergenic 30.0%
TCATGATATGAGTACAAGAT+AGG - Chr5:38724339-38724358 None:intergenic 30.0%
TGAGATGTTCTATTTCATCA+CGG - Chr5:38722760-38722779 None:intergenic 30.0%
TGATCTTCCCTTTGAATTTA+GGG + Chr5:38721856-38721875 MsG0580026510.01.T01:CDS 30.0%
TGATGAAATAGAACATCTCA+TGG + Chr5:38722760-38722779 MsG0580026510.01.T01:CDS 30.0%
TGGATAAAAATTGATCAGGA+TGG + Chr5:38721252-38721271 MsG0580026510.01.T01:CDS 30.0%
TGGCATTATGATTGTTGAAA+TGG - Chr5:38726309-38726328 None:intergenic 30.0%
TGTGATTAAAGTTTACATCC+AGG + Chr5:38724088-38724107 MsG0580026510.01.T01:intron 30.0%
TTAAATCTCGCATGTTGAAA+AGG - Chr5:38725787-38725806 None:intergenic 30.0%
TTCGTAGAAGTTAAAGAGTT+GGG + Chr5:38720901-38720920 MsG0580026510.01.T01:intron 30.0%
! AATAAGGATCTTGATTTGAC+AGG + Chr5:38722508-38722527 MsG0580026510.01.T01:intron 30.0%
! ATACAGTACTTTTACAGATG+AGG - Chr5:38721080-38721099 None:intergenic 30.0%
! ATAGTAGTGGAAGAATTATG+AGG + Chr5:38721613-38721632 MsG0580026510.01.T01:intron 30.0%
! ATGATGTTCATCATCTTTTG+TGG - Chr5:38724716-38724735 None:intergenic 30.0%
! CTTTTCAATCTATCTGTTAC+AGG + Chr5:38723377-38723396 MsG0580026510.01.T01:intron 30.0%
! TAGTAGTGGAAGAATTATGA+GGG + Chr5:38721614-38721633 MsG0580026510.01.T01:intron 30.0%
! TCAGTTTTTCACTACTCATA+TGG + Chr5:38726045-38726064 MsG0580026510.01.T01:intron 30.0%
! TCATGGTATTAAGGATTAGT+AGG + Chr5:38725314-38725333 MsG0580026510.01.T01:intron 30.0%
! TGAAATAGGATGTCTTTTGT+TGG + Chr5:38721654-38721673 MsG0580026510.01.T01:intron 30.0%
! TGACTAGTTCAAAATAACAC+GGG - Chr5:38723859-38723878 None:intergenic 30.0%
! TGATGTTCATCATCTTTTGT+GGG - Chr5:38724715-38724734 None:intergenic 30.0%
! TGCATTTTATCAAAGATGAC+AGG + Chr5:38723655-38723674 MsG0580026510.01.T01:three_prime_UTR 30.0%
! TTTACACTTTTATCTGATCG+TGG + Chr5:38726232-38726251 MsG0580026510.01.T01:three_prime_UTR 30.0%
! TTTTCACTCTATCTGTTACA+GGG + Chr5:38725956-38725975 MsG0580026510.01.T01:intron 30.0%
!! CATCTGTAAAAGTACTGTAT+CGG + Chr5:38721080-38721099 MsG0580026510.01.T01:CDS 30.0%
!! CGATCTATTTTATTTCACGT+AGG + Chr5:38724407-38724426 MsG0580026510.01.T01:intron 30.0%
!! GTAATTAACTGAGTATTGGT+TGG + Chr5:38720936-38720955 MsG0580026510.01.T01:intron 30.0%
!! TGACCAGAAACTTTACTTTT+TGG + Chr5:38721934-38721953 MsG0580026510.01.T01:intron 30.0%
!! TTCTAGTTTACAGCAAAAAG+AGG - Chr5:38721547-38721566 None:intergenic 30.0%
!! TTCTGGATTCAATTTGGTTT+TGG + Chr5:38723527-38723546 MsG0580026510.01.T01:CDS 30.0%
!!! AAGAGTTGGGTTTTGAATAT+TGG + Chr5:38720914-38720933 MsG0580026510.01.T01:intron 30.0%
!!! AATTTGGTTTTGGTAGTTAC+TGG + Chr5:38723537-38723556 MsG0580026510.01.T01:CDS 30.0%
!!! ACCAGAAACTTTACTTTTTG+GGG + Chr5:38721936-38721955 MsG0580026510.01.T01:intron 30.0%
!!! ACCATTCAAATTTGCTGTTT+TGG - Chr5:38723911-38723930 None:intergenic 30.0%
!!! GACCAGAAACTTTACTTTTT+GGG + Chr5:38721935-38721954 MsG0580026510.01.T01:intron 30.0%
!!! GGTTTTATTGTTGTGGTTTA+AGG + Chr5:38725347-38725366 MsG0580026510.01.T01:intron 30.0%
AAAGTTCACTTAGTGCGATA+AGG - Chr5:38724543-38724562 None:intergenic 35.0%
AATAGTCGAAGATCTCTAGA+AGG - Chr5:38721333-38721352 None:intergenic 35.0%
AATGCAATGGAAGAAACACA+AGG + Chr5:38721126-38721145 MsG0580026510.01.T01:CDS 35.0%
ACAAAGACACTATCTCTTTC+AGG + Chr5:38724138-38724157 MsG0580026510.01.T01:intron 35.0%
ACATGTGATATCTCAGCTAT+TGG + Chr5:38720689-38720708 MsG0580026510.01.T01:intron 35.0%
ACCAGTAACACATCAAAGAT+TGG + Chr5:38725588-38725607 MsG0580026510.01.T01:intron 35.0%
ACTACTCATATGGATTCAAG+TGG + Chr5:38726055-38726074 MsG0580026510.01.T01:intron 35.0%
AGAAGAGTAGTCAAAAACTG+AGG - Chr5:38723511-38723530 None:intergenic 35.0%
AGAGTCCTACCTATATAATG+TGG + Chr5:38725686-38725705 MsG0580026510.01.T01:intron 35.0%
ATAGGACACAATCTCAAGAA+TGG - Chr5:38724321-38724340 None:intergenic 35.0%
ATCCTTCTTCCATATTAGGA+AGG + Chr5:38721370-38721389 MsG0580026510.01.T01:CDS 35.0%
ATGCACATCTTTAGATTCTC+AGG + Chr5:38721904-38721923 MsG0580026510.01.T01:CDS 35.0%
ATTCATGAGGATGACTTCAT+CGG - Chr5:38721445-38721464 None:intergenic 35.0%
CAACTCACAAAACAGTGTTT+AGG + Chr5:38722127-38722146 MsG0580026510.01.T01:intron 35.0%
CACAATAATTTCCTTCCCAA+AGG + Chr5:38724754-38724773 MsG0580026510.01.T01:intron 35.0%
CACATATGCTCATATCCTTT+GGG - Chr5:38724772-38724791 None:intergenic 35.0%
CAGAGAGAAAAATCTGGTAA+GGG + Chr5:38721516-38721535 MsG0580026510.01.T01:intron 35.0%
CTACTCATATGGATTCAAGT+GGG + Chr5:38726056-38726075 MsG0580026510.01.T01:intron 35.0%
CTACTCTTCTGGATTCAATT+TGG + Chr5:38723521-38723540 MsG0580026510.01.T01:CDS 35.0%
CTTATGAGATTCTATTCTCC+TGG - Chr5:38724109-38724128 None:intergenic 35.0%
CTTCGTAGAAGTTAAAGAGT+TGG + Chr5:38720900-38720919 MsG0580026510.01.T01:intron 35.0%
CTTTAATCACAGTATCATGC+AGG - Chr5:38724079-38724098 None:intergenic 35.0%
GAAATTGCAGGAAAAACCAT+AGG - Chr5:38722104-38722123 None:intergenic 35.0%
GAACGTGTTCGAAGATTTAA+AGG + Chr5:38722602-38722621 MsG0580026510.01.T01:CDS 35.0%
GAAGAGGTGATTAATGTTAG+CGG - Chr5:38725735-38725754 None:intergenic 35.0%
GAGTCCTACCTATATAATGT+GGG + Chr5:38725687-38725706 MsG0580026510.01.T01:intron 35.0%
GATTCAATGCAAAAATGTGG+AGG - Chr5:38721965-38721984 None:intergenic 35.0%
GATTTGACAGGTAAATGAAC+TGG + Chr5:38722520-38722539 MsG0580026510.01.T01:intron 35.0%
GCACTATTAGGAAATAGTAG+TGG + Chr5:38721600-38721619 MsG0580026510.01.T01:intron 35.0%
GTTAAGATTCTTCACATTGG+TGG + Chr5:38726004-38726023 MsG0580026510.01.T01:intron 35.0%
GTTCATACTTGTCACTCTTA+TGG - Chr5:38725643-38725662 None:intergenic 35.0%
GTTCATCTGATAACACAGAA+AGG + Chr5:38722999-38723018 MsG0580026510.01.T01:CDS 35.0%
GTTCTTTGTGCATAGAAGTT+TGG + Chr5:38720661-38720680 MsG0580026510.01.T01:intron 35.0%
TACTAGCTGAATGAAACCAT+GGG + Chr5:38725286-38725305 MsG0580026510.01.T01:intron 35.0%
TACTCTCAACACATTATCGT+CGG + Chr5:38723072-38723091 MsG0580026510.01.T01:CDS 35.0%
TAGTCCCACATTATATAGGT+AGG - Chr5:38725694-38725713 None:intergenic 35.0%
TCAAACACTGATATCAAGTC+TGG - Chr5:38722358-38722377 None:intergenic 35.0%
TCACATATGCTCATATCCTT+TGG - Chr5:38724773-38724792 None:intergenic 35.0%
TCCCCAAAAAGTAAAGTTTC+TGG - Chr5:38721940-38721959 None:intergenic 35.0%
TCCTTCTTCCATATTAGGAA+GGG + Chr5:38721371-38721390 MsG0580026510.01.T01:CDS 35.0%
TGTAGCACTCAAGATATGTA+GGG + Chr5:38722229-38722248 MsG0580026510.01.T01:intron 35.0%
TGTTCGAATCATGAGTACAT+AGG - Chr5:38725076-38725095 None:intergenic 35.0%
TTACTAGCTGAATGAAACCA+TGG + Chr5:38725285-38725304 MsG0580026510.01.T01:intron 35.0%
TTGGGAAGGAAATTATTGTG+AGG - Chr5:38724754-38724773 None:intergenic 35.0%
TTGTAGCACTCAAGATATGT+AGG + Chr5:38722228-38722247 MsG0580026510.01.T01:intron 35.0%
TTGTCAACCTTGAACAAATC+CGG + Chr5:38721406-38721425 MsG0580026510.01.T01:CDS 35.0%
TTTATCAAAGATGACAGGAC+TGG + Chr5:38723660-38723679 MsG0580026510.01.T01:three_prime_UTR 35.0%
TTTCAAATTCGTTCACCATC+AGG + Chr5:38722860-38722879 MsG0580026510.01.T01:CDS 35.0%
! ATGCTGTTGAGTTTTCATTC+TGG - Chr5:38723624-38723643 None:intergenic 35.0%
! ATGTTCATCATCTTTTGTGG+GGG - Chr5:38724713-38724732 None:intergenic 35.0%
! CATATTTGTTGATATGGGGA+AGG - Chr5:38724250-38724269 None:intergenic 35.0%
! CTTTTCACTCTATCTGTTAC+AGG + Chr5:38725955-38725974 MsG0580026510.01.T01:intron 35.0%
! GAAGCATCTCAAACTTTATC+AGG - Chr5:38723419-38723438 None:intergenic 35.0%
! GATGTTCATCATCTTTTGTG+GGG - Chr5:38724714-38724733 None:intergenic 35.0%
! GGAGAAACTGTTTGCTAATT+TGG - Chr5:38724818-38724837 None:intergenic 35.0%
! GGTATTAAGGATTAGTAGGT+GGG + Chr5:38725318-38725337 MsG0580026510.01.T01:intron 35.0%
! GTATTAAGGATTAGTAGGTG+GGG + Chr5:38725319-38725338 MsG0580026510.01.T01:intron 35.0%
! TCCAAGTGTTTCTTTTCACT+TGG + Chr5:38726262-38726281 MsG0580026510.01.T01:three_prime_UTR 35.0%
! TGGTATTAAGGATTAGTAGG+TGG + Chr5:38725317-38725336 MsG0580026510.01.T01:intron 35.0%
! TTATACACCGGATTTGTTCA+AGG - Chr5:38721416-38721435 None:intergenic 35.0%
! TTCTAGAGATCTTCGACTAT+TGG + Chr5:38721332-38721351 MsG0580026510.01.T01:CDS 35.0%
! TTGTTGATTAAAGGTTGTGG+TGG + Chr5:38721018-38721037 MsG0580026510.01.T01:intron 35.0%
! TTTGAAATCACTCTACCTGA+TGG - Chr5:38722878-38722897 None:intergenic 35.0%
!! GTTTTGGTAGTTACTGGAAT+TGG + Chr5:38723543-38723562 MsG0580026510.01.T01:CDS 35.0%
!! TCAGTTTTTGACTACTCTTC+TGG + Chr5:38723510-38723529 MsG0580026510.01.T01:CDS 35.0%
!!! GGTAGTTGGTTTTATTGTTG+TGG + Chr5:38725340-38725359 MsG0580026510.01.T01:intron 35.0%
AAACAGTTTCTCCAACAGGA+TGG + Chr5:38724825-38724844 MsG0580026510.01.T01:intron 40.0%
ACAGGTAAATGAACTGGAGA+TGG + Chr5:38722526-38722545 MsG0580026510.01.T01:intron 40.0%
ACTAATCAACCGAGAAAGCT+CGG + Chr5:38725534-38725553 MsG0580026510.01.T01:intron 40.0%
AGAAGGCTGCTAAAATCTCT+AGG + Chr5:38722198-38722217 MsG0580026510.01.T01:intron 40.0%
AGATGTGTCTGACTGAGAAA+AGG + Chr5:38722804-38722823 MsG0580026510.01.T01:CDS 40.0%
ATATGGATTCAAGTGGGTCT+TGG + Chr5:38726062-38726081 MsG0580026510.01.T01:intron 40.0%
ATCATGAGTACATAGGAGTG+AGG - Chr5:38725069-38725088 None:intergenic 40.0%
ATCCTCATGAATTCACTCGA+CGG + Chr5:38721453-38721472 MsG0580026510.01.T01:CDS 40.0%
ATCGGAGTTGTAGCACTATT+AGG + Chr5:38721588-38721607 MsG0580026510.01.T01:intron 40.0%
ATCTATCAGTACTCTCCTTC+TGG + Chr5:38722580-38722599 MsG0580026510.01.T01:CDS 40.0%
ATGATTTAAGCTACTGAGGG+AGG - Chr5:38725412-38725431 None:intergenic 40.0%
CAAAGAATACATCGACGACA+CGG + Chr5:38723187-38723206 MsG0580026510.01.T01:CDS 40.0%
CATAATGCCATTGTTGCACT+TGG + Chr5:38726319-38726338 MsG0580026510.01.T01:three_prime_UTR 40.0%
CATGATTCGAACATAAGCTG+AGG + Chr5:38725083-38725102 MsG0580026510.01.T01:intron 40.0%
CCAGAGAGAAAAATCTGGTA+AGG + Chr5:38721515-38721534 MsG0580026510.01.T01:intron 40.0%
CGCTAAAAGTCTTCCATGTT+CGG + Chr5:38725222-38725241 MsG0580026510.01.T01:intron 40.0%
CTTGTCAAGTGTCACAATCT+CGG - Chr5:38721283-38721302 None:intergenic 40.0%
GAACATCTCATGGATGATGA+TGG + Chr5:38722770-38722789 MsG0580026510.01.T01:CDS 40.0%
GCATCTCAAACTTTATCAGG+AGG - Chr5:38723416-38723435 None:intergenic 40.0%
GCCAAGTGAAAAGAAACACT+TGG - Chr5:38726266-38726285 None:intergenic 40.0%
GCCAATCTTTGATGTGTTAC+TGG - Chr5:38725592-38725611 None:intergenic 40.0%
GTAGCACTCACACTTATTGA+AGG + Chr5:38720763-38720782 MsG0580026510.01.T01:intron 40.0%
GTGGAAGAATTATGAGGGTA+CGG + Chr5:38721619-38721638 MsG0580026510.01.T01:intron 40.0%
TAATCACAGTATCATGCAGG+AGG - Chr5:38724076-38724095 None:intergenic 40.0%
TACTTGTCACTCTTATGGTG+AGG - Chr5:38725638-38725657 None:intergenic 40.0%
TAGCAAACAGTTTCTCCAAC+AGG + Chr5:38724821-38724840 MsG0580026510.01.T01:intron 40.0%
TAGTTGTCCAAGTGCAACAA+TGG - Chr5:38726329-38726348 MsG0580026511.01.T01:CDS 40.0%
TCCAGAGCCCTAAATTCAAA+GGG - Chr5:38721866-38721885 None:intergenic 40.0%
TCCCTTCCTAATATGGAAGA+AGG - Chr5:38721375-38721394 None:intergenic 40.0%
TTCCATATTAGGAAGGGAGA+TGG + Chr5:38721377-38721396 MsG0580026510.01.T01:CDS 40.0%
TTTGACTCAGCGAGTTCAAA+AGG + Chr5:38722637-38722656 MsG0580026510.01.T01:CDS 40.0%
! AGGCTTAACTCTCACTCTTT+TGG - Chr5:38724523-38724542 None:intergenic 40.0%
! CCTTACCAGATTTTTCTCTC+TGG - Chr5:38721518-38721537 None:intergenic 40.0%
! CGCATGTTGAAAAGGTTTTG+CGG - Chr5:38725779-38725798 None:intergenic 40.0%
! CTTTTGAGCTGCATTAGAGA+GGG - Chr5:38725811-38725830 None:intergenic 40.0%
! GTCTTGGTGATTACTGGAAT+TGG + Chr5:38726078-38726097 MsG0580026510.01.T01:intron 40.0%
! GTTCAAAAGGTTGATCAACG+TGG + Chr5:38722650-38722669 MsG0580026510.01.T01:intron 40.0%
! TATGCTCATATCCTTTGGGA+AGG - Chr5:38724768-38724787 None:intergenic 40.0%
! TCTTTTGAGCTGCATTAGAG+AGG - Chr5:38725812-38725831 None:intergenic 40.0%
! TGTGAGTTGTCTGAAATTGC+AGG - Chr5:38722116-38722135 None:intergenic 40.0%
!! AAGGAGAGTACTGATAGATG+AGG - Chr5:38722579-38722598 None:intergenic 40.0%
!!! CTGTTTTGGTACAAGAAGAG+CGG - Chr5:38723897-38723916 None:intergenic 40.0%
!!! GTCGTATTGCCATTTTCTGT+CGG - Chr5:38724501-38724520 None:intergenic 40.0%
AAATATTGCGGCCACCAATG+TGG - Chr5:38723451-38723470 None:intergenic 45.0%
AATTCACTCGACGGTACTGT+TGG + Chr5:38721462-38721481 MsG0580026510.01.T01:CDS 45.0%
AGCCATCTCCCTTCCTAATA+TGG - Chr5:38721382-38721401 None:intergenic 45.0%
ATAAAAGGCCTGAAGCAGAG+AGG + Chr5:38721213-38721232 MsG0580026510.01.T01:CDS 45.0%
ATATCCCGTGCTAGATGAAC+TGG + Chr5:38722553-38722572 MsG0580026510.01.T01:CDS 45.0%
ATCATGCAGGAGGAAGTTGA+TGG - Chr5:38724066-38724085 None:intergenic 45.0%
ATCTTCGAACACGTTCCAGA+AGG - Chr5:38722598-38722617 None:intergenic 45.0%
ATGTTGCCAAGGACTTTCAG+CGG + Chr5:38722941-38722960 MsG0580026510.01.T01:CDS 45.0%
CAGCTCCAGAGAGAAAAATC+TGG + Chr5:38721510-38721529 MsG0580026510.01.T01:CDS 45.0%
CATCGGCAGTGATTATACAC+CGG - Chr5:38721428-38721447 None:intergenic 45.0%
CATTCCAAATACTCCTGCCA+CGG - Chr5:38723478-38723497 None:intergenic 45.0%
CGAGATTGTGACACTTGACA+AGG + Chr5:38721281-38721300 MsG0580026510.01.T01:CDS 45.0%
CTCCAGAGCCCTAAATTCAA+AGG - Chr5:38721867-38721886 None:intergenic 45.0%
TAATACCATGAGGACTCCCA+TGG - Chr5:38725305-38725324 None:intergenic 45.0%
TACCGTCGAGTGAATTCATG+AGG - Chr5:38721458-38721477 None:intergenic 45.0%
TAGACAAGGTTCCATCCTGT+TGG - Chr5:38724839-38724858 None:intergenic 45.0%
TCGCCATTTCATCAATCACG+AGG + Chr5:38723779-38723798 MsG0580026510.01.T01:intron 45.0%
TCTGCATTCTATGACAGCAC+TGG + Chr5:38726188-38726207 MsG0580026510.01.T01:intron 45.0%
TGGCCTCGTGATTGATGAAA+TGG - Chr5:38723785-38723804 None:intergenic 45.0%
TGGGAGTCCTCATGGTATTA+AGG + Chr5:38725305-38725324 MsG0580026510.01.T01:intron 45.0%
TTGGCAACAATCACCGAACA+TGG - Chr5:38725238-38725257 None:intergenic 45.0%
! AAGTGGGTCTTGGTGATTAC+TGG + Chr5:38726072-38726091 MsG0580026510.01.T01:intron 45.0%
! AATCGCAGGGCTGGTATAAA+AGG + Chr5:38721198-38721217 MsG0580026510.01.T01:CDS 45.0%
! CTTTGATGTGTTACTGGTCG+TGG - Chr5:38725586-38725605 None:intergenic 45.0%
! GAAGACTTTTAGCGAGCTTG+TGG - Chr5:38725216-38725235 None:intergenic 45.0%
! GGCATTGAGTGGTGTGAAAT+AGG + Chr5:38721640-38721659 MsG0580026510.01.T01:intron 45.0%
! TCCCTTTGAATTTAGGGCTC+TGG + Chr5:38721862-38721881 MsG0580026510.01.T01:CDS 45.0%
! TTGAAAAGGTTTTGCGGCTG+CGG - Chr5:38725773-38725792 None:intergenic 45.0%
!! ATCCTAGCGCTGTTTTCACA+CGG + Chr5:38723738-38723757 MsG0580026510.01.T01:intron 45.0%
!! CATGGATGATGATGGTGACA+TGG + Chr5:38722778-38722797 MsG0580026510.01.T01:CDS 45.0%
AGAGATCATAGCATGCGCCA+TGG - Chr5:38723829-38723848 None:intergenic 50.0%
AGCAGAGAGGTCATGGAAGT+CGG + Chr5:38721226-38721245 MsG0580026510.01.T01:CDS 50.0%
AGCTTGTGGTGGTTGTGTTG+TGG - Chr5:38725202-38725221 None:intergenic 50.0%
ATCAACCGAGAAAGCTCGGT+CGG + Chr5:38725538-38725557 MsG0580026510.01.T01:intron 50.0%
GAACTCGCTGAGTCAAAGCA+AGG - Chr5:38722634-38722653 None:intergenic 50.0%
GACTAAATCCCCTCGAGTGT+TGG + Chr5:38725709-38725728 MsG0580026510.01.T01:intron 50.0%
GAGTGAAAAGTGATCGTCCC+TGG - Chr5:38725945-38725964 None:intergenic 50.0%
GCTTCCAGCAACATTTCCAG+CGG - Chr5:38723031-38723050 None:intergenic 50.0%
GCTTCTTACAGCAGCCACAT+TGG + Chr5:38723434-38723453 MsG0580026510.01.T01:CDS 50.0%
GGTACAAGAAGAGCGGAGAT+GGG - Chr5:38723890-38723909 None:intergenic 50.0%
TAACAGGCAAGCGAATCGCA+GGG + Chr5:38721185-38721204 MsG0580026510.01.T01:CDS 50.0%
TCTTACAGCAGCCACATTGG+TGG + Chr5:38723437-38723456 MsG0580026510.01.T01:CDS 50.0%
TGAAACCATGGGAGTCCTCA+TGG + Chr5:38725297-38725316 MsG0580026510.01.T01:intron 50.0%
TGAGGCCAGTTCATCTAGCA+CGG - Chr5:38722561-38722580 None:intergenic 50.0%
TGCCACGGCAGCAAATATTG+CGG - Chr5:38723463-38723482 None:intergenic 50.0%
TGGTACAAGAAGAGCGGAGA+TGG - Chr5:38723891-38723910 None:intergenic 50.0%
TGGTGAGGCTAACAAATGCG+TGG - Chr5:38725623-38725642 None:intergenic 50.0%
TGTGGTGGTTGTGTTGTGGA+CGG - Chr5:38725198-38725217 None:intergenic 50.0%
TTAACAGGCAAGCGAATCGC+AGG + Chr5:38721184-38721203 MsG0580026510.01.T01:CDS 50.0%
TTCCATGACCTCTCTGCTTC+AGG - Chr5:38721224-38721243 None:intergenic 50.0%
TTTGTCCGACCGAGCTTTCT+CGG - Chr5:38725546-38725565 None:intergenic 50.0%
! ACACTTATTGAAGGCGTGCC+CGG + Chr5:38720772-38720791 MsG0580026510.01.T01:intron 50.0%
! GACTTTTAGCGAGCTTGTGG+TGG - Chr5:38725213-38725232 None:intergenic 50.0%
! GGATTAGTAGGTGGGGTAGT+TGG + Chr5:38725326-38725345 MsG0580026510.01.T01:intron 50.0%
! TATGAGGGTACGGCATTGAG+TGG + Chr5:38721629-38721648 MsG0580026510.01.T01:intron 50.0%
!! GAGTTGTGTCGATTCGGAAG+AGG - Chr5:38725751-38725770 None:intergenic 50.0%
ACGGTACTGTTGGTCGGTAC+AGG + Chr5:38721472-38721491 MsG0580026510.01.T01:CDS 55.0%
ACTAACACGTGTCAGACGCC+GGG - Chr5:38720793-38720812 None:intergenic 55.0%
AGCCGTGTGAAAACAGCGCT+AGG - Chr5:38723743-38723762 None:intergenic 55.0%
AGTGACCGCTCTGGTGAAGT+AGG - Chr5:38722908-38722927 None:intergenic 55.0%
ATGTTAGCGGCCAACACTCG+AGG - Chr5:38725722-38725741 None:intergenic 55.0%
CAAGAAGAGCGGAGATGGGA+AGG - Chr5:38723886-38723905 None:intergenic 55.0%
CACAGAAAGGATTCAGCCGC+TGG + Chr5:38723012-38723031 MsG0580026510.01.T01:CDS 55.0%
CACCAGAGCGGTCACTTAGT+GGG + Chr5:38722912-38722931 MsG0580026510.01.T01:CDS 55.0%
CACTAACACGTGTCAGACGC+CGG - Chr5:38720794-38720813 None:intergenic 55.0%
CACTCGACGGTACTGTTGGT+CGG + Chr5:38721466-38721485 MsG0580026510.01.T01:CDS 55.0%
CCAAGGACTTTCAGCGGCAT+TGG + Chr5:38722947-38722966 MsG0580026510.01.T01:CDS 55.0%
CCAATGCCGCTGAAAGTCCT+TGG - Chr5:38722950-38722969 None:intergenic 55.0%
GAGGCCAGTTCATCTAGCAC+GGG - Chr5:38722560-38722579 None:intergenic 55.0%
GAGGTCATGGAAGTCGGTCT+TGG + Chr5:38721232-38721251 MsG0580026510.01.T01:CDS 55.0%
GTGACCGCTCTGGTGAAGTA+GGG - Chr5:38722907-38722926 None:intergenic 55.0%
GTGGGCTTCAGATGTTGCCA+AGG + Chr5:38722930-38722949 MsG0580026510.01.T01:CDS 55.0%
GTGTTGTGGACGGTGCAGTA+GGG - Chr5:38725188-38725207 None:intergenic 55.0%
TAGTTGCCCAAGCGCGATGA+TGG - Chr5:38723805-38723824 None:intergenic 55.0%
TCACCAGAGCGGTCACTTAG+TGG + Chr5:38722911-38722930 MsG0580026510.01.T01:CDS 55.0%
TCAGCCGCTGGAAATGTTGC+TGG + Chr5:38723024-38723043 MsG0580026510.01.T01:CDS 55.0%
TGACCGCTCTGGTGAAGTAG+GGG - Chr5:38722906-38722925 None:intergenic 55.0%
TGTGTTGTGGACGGTGCAGT+AGG - Chr5:38725189-38725208 None:intergenic 55.0%
TGTTAGCGGCCAACACTCGA+GGG - Chr5:38725721-38725740 None:intergenic 55.0%
! GCAATATTTGCTGCCGTGGC+AGG + Chr5:38723462-38723481 MsG0580026510.01.T01:CDS 55.0%
!! GCTGCGGAGTTGTGTCGATT+CGG - Chr5:38725757-38725776 None:intergenic 55.0%
!! TAGGGCTCTGGAGTTAGCTC+TGG + Chr5:38721874-38721893 MsG0580026510.01.T01:CDS 55.0%
ACGAGGCCATCATCGCGCTT+GGG + Chr5:38723796-38723815 MsG0580026510.01.T01:intron 60.0%
AGCCCACTAAGTGACCGCTC+TGG - Chr5:38722917-38722936 None:intergenic 60.0%
CAGCCCCTACTTCACCAGAG+CGG + Chr5:38722900-38722919 MsG0580026510.01.T01:CDS 60.0%
CGCGCTTGGGCAACTATCCA+TGG + Chr5:38723809-38723828 MsG0580026510.01.T01:intron 60.0%
GGCCTGAAGCAGAGAGGTCA+TGG + Chr5:38721219-38721238 MsG0580026510.01.T01:CDS 60.0%
GTTAGCGGCCAACACTCGAG+GGG - Chr5:38725720-38725739 None:intergenic 60.0%
! GGCCGCAATATTTGCTGCCG+TGG + Chr5:38723458-38723477 MsG0580026510.01.T01:CDS 60.0%
!! GCTGCCGTGGCAGGAGTATT+TGG + Chr5:38723471-38723490 MsG0580026510.01.T01:CDS 60.0%
AGGCAAGCGAATCGCAGGGC+TGG + Chr5:38721189-38721208 MsG0580026510.01.T01:CDS 65.0%
CACGAGGCCATCATCGCGCT+TGG + Chr5:38723795-38723814 MsG0580026510.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 38720501 38726383 38720501 ID=MsG0580026510.01;Name=MsG0580026510.01
Chr5 mRNA 38720501 38726383 38720501 ID=MsG0580026510.01.T01;Parent=MsG0580026510.01;Name=MsG0580026510.01.T01;_AED=0.39;_eAED=0.40;_QI=0|0.87|0.88|1|0.75|0.66|9|202|440
Chr5 exon 38723399 38723696 38723399 ID=MsG0580026510.01.T01:exon:36751;Parent=MsG0580026510.01.T01
Chr5 exon 38726229 38726345 38726229 ID=MsG0580026510.01.T01:exon:36752;Parent=MsG0580026510.01.T01
Chr5 exon 38726366 38726383 38726366 ID=MsG0580026510.01.T01:exon:36753;Parent=MsG0580026510.01.T01
Chr5 CDS 38720501 38720504 38720501 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38721031 38721531 38721031 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38721855 38721925 38721855 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38722530 38722658 38722530 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38722755 38723093 38722755 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38723185 38723232 38723185 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 CDS 38723399 38723629 38723399 ID=MsG0580026510.01.T01:cds;Parent=MsG0580026510.01.T01
Chr5 three_prime_UTR 38723630 38723696 38723630 ID=MsG0580026510.01.T01:three_prime_utr;Parent=MsG0580026510.01.T01
Chr5 three_prime_UTR 38726229 38726345 38726229 ID=MsG0580026510.01.T01:three_prime_utr;Parent=MsG0580026510.01.T01
Chr5 three_prime_UTR 38726366 38726383 38726366 ID=MsG0580026510.01.T01:three_prime_utr;Parent=MsG0580026510.01.T01
Chr5 mRNA 38720501 38724159 38720501 ID=MsG0580026510.01.T02;Parent=MsG0580026510.01;Name=MsG0580026510.01.T02;_AED=0.37;_eAED=0.37;_QI=0|0.83|0.85|1|1|1|7|530|440
Chr5 exon 38723399 38724159 38723399 ID=MsG0580026510.01.T02:exon:36754;Parent=MsG0580026510.01.T02
Chr5 CDS 38720501 38720504 38720501 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38721031 38721531 38721031 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38721855 38721925 38721855 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38722530 38722658 38722530 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38722755 38723093 38722755 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38723185 38723232 38723185 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 CDS 38723399 38723629 38723399 ID=MsG0580026510.01.T02:cds;Parent=MsG0580026510.01.T02
Chr5 three_prime_UTR 38723630 38724159 38723630 ID=MsG0580026510.01.T02:three_prime_utr;Parent=MsG0580026510.01.T02
Gene Sequence

>MsG0580026510.01.T01

ATGGGTTGTGGTGGAAATGAATACTTGATTAGTAAAGGGGATCGATGCTACCTCATCTGTAAAAGTACTGTATCGGAATTGCGAGTGAGAACAATATACAATGCAATGGAAGAAACACAAGGACAGTATTATGTTTCTAGTCTACATGAGTATGATTTTAACAGGCAAGCGAATCGCAGGGCTGGTATAAAAGGCCTGAAGCAGAGAGGTCATGGAAGTCGGTCTTGGATAAAAATTGATCAGGATGGGAATTCCGAGATTGTGACACTTGACAAGGCTACGATTATGAGACATTGTTCTTTGCCTTCTAGAGATCTTCGACTATTGGATCCGAAATTCATTTATCCTTCTTCCATATTAGGAAGGGAGATGGCTATTGTTGTCAACCTTGAACAAATCCGGTGTATAATCACTGCCGATGAAGTCATCCTCATGAATTCACTCGACGGTACTGTTGGTCGGTACAGGACAATATTATGCAATCAGCTCCAGAGAGAAAAATCTGATGATCTTCCCTTTGAATTTAGGGCTCTGGAGTTAGCTCTGGAATTGACATGCACATCTTTAGATTCTCAGGTAAATGAACTGGAGATGGAAATATATCCCGTGCTAGATGAACTGGCCTCATCTATCAGTACTCTCCTTCTGGAACGTGTTCGAAGATTTAAAGGTCATCTCCTTGCTTTGACTCAGCGAGTTCAAAAGGTCCGTGATGAAATAGAACATCTCATGGATGATGATGGTGACATGGCTGAGATGTGTCTGACTGAGAAAAGGAGAAGACTAGATGCTTCTCCTTCAAATGATTGTTTTCAAATTCGTTCACCATCAGGTAGAGTGATTTCAAAATCAGCCCCTACTTCACCAGAGCGGTCACTTAGTGGGCTTCAGATGTTGCCAAGGACTTTCAGCGGCATTGGAAATTCAAGTAAATATGGTAGTTCAACGGGTTCATCTGATAACACAGAAAGGATTCAGCCGCTGGAAATGTTGCTGGAAGCGTACTTTATCGTCATTGATAATACTCTCAACACATTATCGTCGCTCAAAGAATACATCGACGACACGGAAGATTTTCTCAACATAAAATTGGGAAATATTCAAAACCTCCTGATAAAGTTTGAGATGCTTCTTACAGCAGCCACATTGGTGGCCGCAATATTTGCTGCCGTGGCAGGAGTATTTGGAATGAACTTTGAAACCTCAGTTTTTGACTACTCTTCTGGATTCAATTTGGTTTTGGTAGTTACTGGAATTGGTTGTGTAGCATTGTATTTCGCCTTACTATTCTATTTTAGATACAAAAAAGTGCTTCCAGAATGA

>MsG0580026510.01.T02

ATGGGTTGTGGTGGAAATGAATACTTGATTAGTAAAGGGGATCGATGCTACCTCATCTGTAAAAGTACTGTATCGGAATTGCGAGTGAGAACAATATACAATGCAATGGAAGAAACACAAGGACAGTATTATGTTTCTAGTCTACATGAGTATGATTTTAACAGGCAAGCGAATCGCAGGGCTGGTATAAAAGGCCTGAAGCAGAGAGGTCATGGAAGTCGGTCTTGGATAAAAATTGATCAGGATGGGAATTCCGAGATTGTGACACTTGACAAGGCTACGATTATGAGACATTGTTCTTTGCCTTCTAGAGATCTTCGACTATTGGATCCGAAATTCATTTATCCTTCTTCCATATTAGGAAGGGAGATGGCTATTGTTGTCAACCTTGAACAAATCCGGTGTATAATCACTGCCGATGAAGTCATCCTCATGAATTCACTCGACGGTACTGTTGGTCGGTACAGGACAATATTATGCAATCAGCTCCAGAGAGAAAAATCTGATGATCTTCCCTTTGAATTTAGGGCTCTGGAGTTAGCTCTGGAATTGACATGCACATCTTTAGATTCTCAGGTAAATGAACTGGAGATGGAAATATATCCCGTGCTAGATGAACTGGCCTCATCTATCAGTACTCTCCTTCTGGAACGTGTTCGAAGATTTAAAGGTCATCTCCTTGCTTTGACTCAGCGAGTTCAAAAGGTCCGTGATGAAATAGAACATCTCATGGATGATGATGGTGACATGGCTGAGATGTGTCTGACTGAGAAAAGGAGAAGACTAGATGCTTCTCCTTCAAATGATTGTTTTCAAATTCGTTCACCATCAGGTAGAGTGATTTCAAAATCAGCCCCTACTTCACCAGAGCGGTCACTTAGTGGGCTTCAGATGTTGCCAAGGACTTTCAGCGGCATTGGAAATTCAAGTAAATATGGTAGTTCAACGGGTTCATCTGATAACACAGAAAGGATTCAGCCGCTGGAAATGTTGCTGGAAGCGTACTTTATCGTCATTGATAATACTCTCAACACATTATCGTCGCTCAAAGAATACATCGACGACACGGAAGATTTTCTCAACATAAAATTGGGAAATATTCAAAACCTCCTGATAAAGTTTGAGATGCTTCTTACAGCAGCCACATTGGTGGCCGCAATATTTGCTGCCGTGGCAGGAGTATTTGGAATGAACTTTGAAACCTCAGTTTTTGACTACTCTTCTGGATTCAATTTGGTTTTGGTAGTTACTGGAATTGGTTGTGTAGCATTGTATTTCGCCTTACTATTCTATTTTAGATACAAAAAAGTGCTTCCAGAATGA
Protein sequence

>MsG0580026510.01.T01

MGCGGNEYLISKGDRCYLICKSTVSELRVRTIYNAMEETQGQYYVSSLHEYDFNRQANRRAGIKGLKQRGHGSRSWIKIDQDGNSEIVTLDKATIMRHCSLPSRDLRLLDPKFIYPSSILGREMAIVVNLEQIRCIITADEVILMNSLDGTVGRYRTILCNQLQREKSDDLPFEFRALELALELTCTSLDSQVNELEMEIYPVLDELASSISTLLLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMCLTEKRRRLDASPSNDCFQIRSPSGRVISKSAPTSPERSLSGLQMLPRTFSGIGNSSKYGSSTGSSDNTERIQPLEMLLEAYFIVIDNTLNTLSSLKEYIDDTEDFLNIKLGNIQNLLIKFEMLLTAATLVAAIFAAVAGVFGMNFETSVFDYSSGFNLVLVVTGIGCVALYFALLFYFRYKKVLPE*

>MsG0580026510.01.T02

MGCGGNEYLISKGDRCYLICKSTVSELRVRTIYNAMEETQGQYYVSSLHEYDFNRQANRRAGIKGLKQRGHGSRSWIKIDQDGNSEIVTLDKATIMRHCSLPSRDLRLLDPKFIYPSSILGREMAIVVNLEQIRCIITADEVILMNSLDGTVGRYRTILCNQLQREKSDDLPFEFRALELALELTCTSLDSQVNELEMEIYPVLDELASSISTLLLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMCLTEKRRRLDASPSNDCFQIRSPSGRVISKSAPTSPERSLSGLQMLPRTFSGIGNSSKYGSSTGSSDNTERIQPLEMLLEAYFIVIDNTLNTLSSLKEYIDDTEDFLNIKLGNIQNLLIKFEMLLTAATLVAAIFAAVAGVFGMNFETSVFDYSSGFNLVLVVTGIGCVALYFALLFYFRYKKVLPE*