AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022166.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022166.01.T01 MTR_4g084130 85.614 285 33 2 35 311 77 361 4.76e-168 475
MsG0480022166.01.T01 MTR_4g084130 85.614 285 33 2 35 311 189 473 4.15e-166 474
MsG0480022166.01.T01 MTR_4g057970 56.690 284 115 2 35 310 197 480 8.22e-104 315
MsG0480022166.01.T01 MTR_1g017390 40.426 282 160 2 35 308 197 478 2.58e-64 213
MsG0480022166.01.T01 MTR_1g017380 40.426 282 160 2 35 308 197 478 3.32e-64 213
MsG0480022166.01.T01 MTR_1g090130 37.638 271 155 5 37 296 185 452 3.84e-49 172
MsG0480022166.01.T01 MTR_1g090140 36.296 270 160 3 37 296 185 452 8.50e-49 171
MsG0480022166.01.T01 MTR_8g017080 33.688 282 175 3 41 312 190 469 1.47e-44 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022166.01.T01 AT5G18820 65.614 285 89 3 35 310 77 361 2.75e-115 341
MsG0480022166.01.T01 AT5G18820 65.614 285 89 3 35 310 183 467 6.53e-114 341
MsG0480022166.01.T01 AT2G28000 54.452 292 124 3 27 310 189 479 4.01e-101 308
MsG0480022166.01.T01 AT5G18820 63.229 223 80 1 35 255 183 405 6.44e-82 255
MsG0480022166.01.T01 AT1G55490 40.702 285 159 4 35 310 206 489 3.86e-64 213
MsG0480022166.01.T01 AT1G55490 40.702 285 159 4 35 310 206 489 3.86e-64 213
MsG0480022166.01.T01 AT1G55490 40.702 285 159 4 35 310 206 489 3.86e-64 213
MsG0480022166.01.T01 AT1G55490 40.702 285 159 4 35 310 206 489 3.86e-64 213
MsG0480022166.01.T01 AT1G55490 40.702 285 159 4 35 310 206 489 3.86e-64 213
MsG0480022166.01.T01 AT3G13470 40.351 285 160 4 35 310 202 485 1.43e-63 211
MsG0480022166.01.T01 AT5G56500 41.343 283 156 4 35 308 202 483 4.65e-62 207
MsG0480022166.01.T01 AT5G56500 41.343 283 156 4 35 308 202 483 4.65e-62 207
MsG0480022166.01.T01 AT1G26230 35.789 285 173 4 35 310 190 473 2.26e-50 175
MsG0480022166.01.T01 AT1G26230 35.789 285 173 4 35 310 130 413 3.56e-50 175
MsG0480022166.01.T01 AT1G26230 35.789 285 173 4 35 310 138 421 4.13e-50 175
MsG0480022166.01.T01 AT1G26230 35.789 285 173 4 35 310 190 473 6.94e-50 175
MsG0480022166.01.T01 AT3G23990 38.202 267 151 5 41 296 188 451 1.18e-48 171
MsG0480022166.01.T01 AT3G13860 35.816 282 169 3 41 312 188 467 6.12e-46 164
MsG0480022166.01.T01 AT2G33210 35.926 270 159 5 38 296 186 452 1.99e-45 162
MsG0480022166.01.T01 AT2G33210 35.714 266 160 4 38 296 186 447 5.23e-45 161
MsG0480022166.01.T01 AT1G26230 35.968 253 152 4 35 278 190 441 1.59e-43 155

Find 112 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCCATGGAGTTCTTTA+TGG 0.180538 4:+69209086 None:intergenic
AAATATAGTTGTTGCATTAC+TGG 0.223714 4:+69210643 None:intergenic
TATAAAATGAATCGATAAAA+TGG 0.237331 4:+69207210 None:intergenic
AGGAACAAGTCCCTCATTTA+TGG 0.247557 4:+69209152 None:intergenic
TGCCACATATGTCCACCTTT+TGG 0.268341 4:-69209121 MsG0480022166.01.T01:CDS
AATTGCATCGGAAAGCTATA+TGG 0.273514 4:+69212641 None:intergenic
CGGTTGCTGTTTCTTACTCT+TGG 0.295088 4:-69207323 MsG0480022166.01.T01:three_prime_UTR
GTTTGACAATGCTAAAGTTT+TGG 0.318990 4:-69211487 MsG0480022166.01.T01:CDS
GGTTGCTGTTTCTTACTCTT+GGG 0.329280 4:-69207322 MsG0480022166.01.T01:three_prime_UTR
CAAAGAAATAGTTCCTTTGC+TGG 0.343686 4:-69211439 MsG0480022166.01.T01:CDS
TGAATTTCAGCCTTAGTGTT+TGG 0.363338 4:+69210614 None:intergenic
CCATTGGGTTGATTAGTACT+TGG 0.365452 4:-69207382 MsG0480022166.01.T01:three_prime_UTR
CCGCTAGGGGATTGTAATCT+TGG 0.369134 4:+69210985 None:intergenic
ATAAATGAGGGACTTGTTCC+TGG 0.377624 4:-69209150 MsG0480022166.01.T01:CDS
ATAGGGAGTTGAATAGTGTT+AGG 0.390313 4:-69207242 MsG0480022166.01.T01:three_prime_UTR
AAACACTAAGGCTGAAATTC+AGG 0.392021 4:-69210612 MsG0480022166.01.T01:CDS
TCCTGGTTGGTGATGAAGTA+AGG 0.397913 4:+69211525 None:intergenic
TTCCTATGCTTCGTGATACA+TGG 0.398814 4:+69207287 None:intergenic
TTATTGACAATATCAGATAT+AGG 0.399438 4:+69207150 None:intergenic
ATAGAGAAGATTGGATTTGA+TGG 0.411296 4:-69212139 MsG0480022166.01.T01:CDS
TGTCAATAATAAACTCCAAT+TGG 0.417604 4:-69207136 MsG0480022166.01.T01:three_prime_UTR
GGATAGAAAGCTGAGGATTG+AGG 0.422156 4:-69209199 MsG0480022166.01.T01:CDS
GAGAGAATTGCGAAACTCAC+TGG 0.423970 4:-69210521 MsG0480022166.01.T01:CDS
ACCAGAGGTACACGTGGCTT+GGG 0.437428 4:+69207478 None:intergenic
GATTTGGGTCTTACACTTGA+AGG 0.439787 4:-69210710 MsG0480022166.01.T01:CDS
GCAGCTAATGCTGGAGTTGA+TGG 0.441043 4:-69207695 MsG0480022166.01.T01:three_prime_UTR
TGGAAGATCTGAGAGCAAAT+TGG 0.442856 4:-69209071 MsG0480022166.01.T01:CDS
TTATTTCTGTACAGATTGAC+AGG 0.447480 4:-69211560 MsG0480022166.01.T01:intron
GCTGAAGCTATAGAGAAGAT+TGG 0.448331 4:-69212148 MsG0480022166.01.T01:CDS
CGAGTACTGAAATCTATTGA+AGG 0.451425 4:-69207049 MsG0480022166.01.T01:three_prime_UTR
CACGAAGCATAGGAACAATT+AGG 0.453661 4:-69207279 MsG0480022166.01.T01:three_prime_UTR
TAGGAACTTCAAAGTTACAT+AGG 0.459557 4:-69207260 MsG0480022166.01.T01:three_prime_UTR
AAATCAATTGCAGCTAATGC+TGG 0.460888 4:-69207704 MsG0480022166.01.T01:three_prime_UTR
TCCATGGAGTTCTTTATGGC+AGG 0.461420 4:+69209090 None:intergenic
ATTCGATGATGAATGTCCAT+TGG 0.461738 4:-69207398 MsG0480022166.01.T01:three_prime_UTR
GACCAGAGGTACACGTGGCT+TGG 0.462563 4:+69207477 None:intergenic
AACAAGAATGCTCTTATGAA+TGG 0.468016 4:-69207354 MsG0480022166.01.T01:three_prime_UTR
GGCACACTTAAACATCCAAT+TGG 0.468648 4:+69207121 None:intergenic
CCCTCTGTGGTAATTGAAGA+AGG 0.472729 4:-69212082 MsG0480022166.01.T01:CDS
CATTGGGTTGATTAGTACTT+GGG 0.476943 4:-69207381 MsG0480022166.01.T01:three_prime_UTR
ACCCAAGCCACGTGTACCTC+TGG 0.480505 4:-69207479 MsG0480022166.01.T01:three_prime_UTR
TTCGATGATGAATGTCCATT+GGG 0.482674 4:-69207397 MsG0480022166.01.T01:three_prime_UTR
TAGAGAAGATTGGATTTGAT+GGG 0.484021 4:-69212138 MsG0480022166.01.T01:CDS
TTAGCTGCAATTGATTTAGC+AGG 0.491114 4:+69207710 None:intergenic
TCCGATGCAATTGAGAATGC+TGG 0.492043 4:-69212630 MsG0480022166.01.T01:CDS
ATTGCATCGGAAAGCTATAT+GGG 0.496353 4:+69212642 None:intergenic
GCTGTAGCCTCGATTTCTGC+TGG 0.500546 4:-69212198 MsG0480022166.01.T01:CDS
TCTCTGAGAGCTTTCTCGAA+TGG 0.502708 4:+69210540 None:intergenic
AATCGATACAATGCCATGAC+TGG 0.503792 4:-69207632 MsG0480022166.01.T01:three_prime_UTR
ATTTGCTCTCAGATCTTCCA+TGG 0.508882 4:+69209074 None:intergenic
CTTTCATTGCAGTACCAAGC+TGG 0.512828 4:+69210675 None:intergenic
GAGGGACTTGTTCCTGGAGG+GGG 0.523820 4:-69209144 MsG0480022166.01.T01:CDS
CGTCAGTTGACTGTTAATAG+AGG 0.532261 4:-69210951 MsG0480022166.01.T01:intron
TCCTATGCTTCGTGATACAT+GGG 0.533265 4:+69207288 None:intergenic
AGGAACTTCAAAGTTACATA+GGG 0.536839 4:-69207259 MsG0480022166.01.T01:three_prime_UTR
ATGAGGGACTTGTTCCTGGA+GGG 0.540906 4:-69209146 MsG0480022166.01.T01:CDS
AGAGAATTGCGAAACTCACT+GGG 0.543748 4:-69210520 MsG0480022166.01.T01:CDS
GCACATCTTGCAACTCGACT+AGG 0.544259 4:+69207572 None:intergenic
TTCAGTACTCGAGATATTAG+CGG 0.546119 4:+69207061 None:intergenic
CCTTCTTCAATTACCACAGA+GGG 0.548053 4:+69212082 None:intergenic
TGCAGTCTCCATTGCTAGCG+TGG 0.548928 4:-69207540 MsG0480022166.01.T01:three_prime_UTR
GTTGCTGTTTCTTACTCTTG+GGG 0.550639 4:-69207321 MsG0480022166.01.T01:three_prime_UTR
TGCTCCGCTCTTAATTATTG+CGG 0.552174 4:-69211397 MsG0480022166.01.T01:CDS
GGACGTCACTGCACAAGTGT+TGG 0.553988 4:-69211373 MsG0480022166.01.T01:CDS
CCACGTGTACCTCTGGTCCC+TGG 0.554763 4:-69207472 MsG0480022166.01.T01:three_prime_UTR
GTCGACCTCTTGAATTAGCA+TGG 0.554920 4:+69212606 None:intergenic
TGGCAGGTATCAAGTCCAAA+AGG 0.555888 4:+69209106 None:intergenic
GGTAATTGAAGAAGGGATGA+AGG 0.557464 4:-69212074 MsG0480022166.01.T01:intron
AGAAGACTAGAACATTTGAC+TGG 0.559546 4:-69207657 MsG0480022166.01.T01:three_prime_UTR
GTCCAAAAGGTGGACATATG+TGG 0.568776 4:+69209119 None:intergenic
ATTTGCTGATCCAAACACTA+AGG 0.569532 4:-69210624 MsG0480022166.01.T01:CDS
ACGTACTGAAACAACCGCTA+GGG 0.570789 4:+69210971 None:intergenic
ATCTTCATATGTGCCAGTCA+TGG 0.575331 4:+69207619 None:intergenic
AGTTAGAACCACGCTAGCAA+TGG 0.576905 4:+69207532 None:intergenic
GTTTAAGTGTGCCAGTGTCA+TGG 0.582934 4:-69207111 MsG0480022166.01.T01:three_prime_UTR
CACAGAGGGTTCAGATGATG+AGG 0.585532 4:+69212096 None:intergenic
GTACTCGAGATATTAGCGGC+TGG 0.587940 4:+69207065 None:intergenic
ACCAGCATTCTCAATTGCAT+CGG 0.591998 4:+69212629 None:intergenic
ACCTGCCATAAAGAACTCCA+TGG 0.595150 4:-69209091 MsG0480022166.01.T01:CDS
GAGAGCAAATTCCATGACAC+TGG 0.600560 4:+69207100 None:intergenic
GCAAATTGGTGCTGATATTG+TGG 0.604334 4:-69209057 MsG0480022166.01.T01:exon
TGAGGGACTTGTTCCTGGAG+GGG 0.606887 4:-69209145 MsG0480022166.01.T01:CDS
CTGGTCCATGCTAATTCAAG+AGG 0.607881 4:-69212611 MsG0480022166.01.T01:CDS
TCCGCTCTTAATTATTGCGG+AGG 0.608855 4:-69211394 MsG0480022166.01.T01:CDS
TCCTTACTTCATCACCAACC+AGG 0.611481 4:-69211526 MsG0480022166.01.T01:CDS
TGCTGGAATGACGAGTATGT+TGG 0.615872 4:-69212181 MsG0480022166.01.T01:CDS
GACGTACTGAAACAACCGCT+AGG 0.616168 4:+69210970 None:intergenic
CTCATCATCTGAACCCTCTG+TGG 0.621846 4:-69212095 MsG0480022166.01.T01:CDS
TGGTGCTGATATTGTGGCGA+AGG 0.622265 4:-69209051 MsG0480022166.01.T01:intron
CCTCTGTGGTAATTGAAGAA+GGG 0.624622 4:-69212081 MsG0480022166.01.T01:CDS
ACACACTGAGCTAGAACTTG+AGG 0.625418 4:-69209220 MsG0480022166.01.T01:CDS
AGAGAAGATTGGATTTGATG+GGG 0.625525 4:-69212137 MsG0480022166.01.T01:CDS
AGCATTGTCAAACTCCACAA+TGG 0.627191 4:+69211497 None:intergenic
CGTCATTCCAGCAGAAATCG+AGG 0.638226 4:+69212191 None:intergenic
TCTTATGAATGGAAAAGTCA+CGG 0.641737 4:-69207343 MsG0480022166.01.T01:three_prime_UTR
GGTACAACATCAGACCAGCT+TGG 0.642489 4:-69210689 MsG0480022166.01.T01:CDS
ACCCATGTATCACGAAGCAT+AGG 0.644738 4:-69207289 MsG0480022166.01.T01:three_prime_UTR
TATTTCTGTACAGATTGACA+GGG 0.647650 4:-69211559 MsG0480022166.01.T01:intron
CTAATTCAAGAGGTCGACCA+TGG 0.650322 4:-69212601 MsG0480022166.01.T01:intron
CGTACTGAAACAACCGCTAG+GGG 0.654139 4:+69210972 None:intergenic
AGATGATGAGGATGACTCGA+TGG 0.670117 4:+69212108 None:intergenic
CCAAGTACTAATCAACCCAA+TGG 0.670646 4:+69207382 None:intergenic
CAGGTATCAAGTCCAAAAGG+TGG 0.673351 4:+69209109 None:intergenic
GGAGTTATACCAGGGACCAG+AGG 0.684313 4:+69207463 None:intergenic
CCCTTCTTCAATTACCACAG+AGG 0.689217 4:+69212081 None:intergenic
TCCTCCGCAATAATTAAGAG+CGG 0.695220 4:+69211393 None:intergenic
ATTTCTGTACAGATTGACAG+GGG 0.695818 4:-69211558 MsG0480022166.01.T01:intron
CCAGGGACCAGAGGTACACG+TGG 0.705754 4:+69207472 None:intergenic
AATGAGGGACTTGTTCCTGG+AGG 0.707403 4:-69209147 MsG0480022166.01.T01:CDS
AACTTGAGGATAGAAAGCTG+AGG 0.724054 4:-69209206 MsG0480022166.01.T01:CDS
CCAAGATTACAATCCCCTAG+CGG 0.743750 4:-69210985 MsG0480022166.01.T01:CDS
GAGAATTGCGAAACTCACTG+GGG 0.807164 4:-69210519 MsG0480022166.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGCTATATTTATA+GGG + Chr4:69207701-69207720 None:intergenic 10.0%
!! AAACATATATGAATATATAA+AGG - Chr4:69207829-69207848 MsG0480022166.01.T01:intron 10.0%
!! TAAAAAATTGCTATATTTAT+AGG + Chr4:69207702-69207721 None:intergenic 10.0%
!!! AACATTCAATTTTATTTTTT+AGG - Chr4:69207977-69207996 MsG0480022166.01.T01:intron 10.0%
!!! AACATTTCATTTTATTTTTT+AGG + Chr4:69207733-69207752 None:intergenic 10.0%
!!! AATTATTTTAATAAAGTCTA+TGG - Chr4:69208551-69208570 MsG0480022166.01.T01:intron 10.0%
!!! AATTTTATTATTTTAGTTTC+TGG - Chr4:69211825-69211844 MsG0480022166.01.T01:intron 10.0%
!!! AATTTTTTTTGTTTTAGTTT+TGG - Chr4:69207764-69207783 MsG0480022166.01.T01:intron 10.0%
!!! ACATTCAATTTTATTTTTTA+GGG - Chr4:69207978-69207997 MsG0480022166.01.T01:intron 10.0%
!!! ACATTTCATTTTATTTTTTA+GGG + Chr4:69207732-69207751 None:intergenic 10.0%
!!! CAAAAAAATTATTTTGTTTT+TGG + Chr4:69207948-69207967 None:intergenic 10.0%
!! AAAATGTTAAATGAAAACAA+AGG + Chr4:69208631-69208650 None:intergenic 15.0%
!! ATAAGTTATGATATAACAAT+AGG - Chr4:69210079-69210098 MsG0480022166.01.T01:intron 15.0%
!! GTATTTATGATGATAAATTA+GGG - Chr4:69207658-69207677 MsG0480022166.01.T01:three_prime_UTR 15.0%
!! TATAAAATGAATCGATAAAA+TGG + Chr4:69212503-69212522 None:intergenic 15.0%
!!! ATTTTTTTTTACTTAACTGT+TGG - Chr4:69209772-69209791 MsG0480022166.01.T01:intron 15.0%
!!! CAATAATTTTTTTTTGAAGA+AGG + Chr4:69210899-69210918 None:intergenic 15.0%
!!! TGAAATTGTTTTCTATTTTA+GGG + Chr4:69212271-69212290 None:intergenic 15.0%
!!! TTGAATTTTGTTGTTTTATA+TGG - Chr4:69208798-69208817 MsG0480022166.01.T01:intron 15.0%
!!! TTTAGTAATTTATTTGCTTT+TGG + Chr4:69210259-69210278 None:intergenic 15.0%
!!! TTTCATTTAACATTTTTAGT+TGG - Chr4:69208635-69208654 MsG0480022166.01.T01:intron 15.0%
!! AAAAATGACCAACATTTATT+GGG - Chr4:69211777-69211796 MsG0480022166.01.T01:intron 20.0%
!! AAACATACCTCATTTATTTA+TGG - Chr4:69210953-69210972 MsG0480022166.01.T01:CDS 20.0%
!! AAAGAAAAAATATTCAGACT+CGG + Chr4:69210726-69210745 None:intergenic 20.0%
!! AAATTTCATCCATTAATCTA+AGG + Chr4:69207147-69207166 None:intergenic 20.0%
!! AGTATTTCTTACTCTATTTA+AGG - Chr4:69209319-69209338 MsG0480022166.01.T01:intron 20.0%
!! ATGAACATAAATTGTCATTA+AGG - Chr4:69207921-69207940 MsG0480022166.01.T01:intron 20.0%
!! ATGTCAAAATTATATCCATT+AGG + Chr4:69207792-69207811 None:intergenic 20.0%
!! ATTGTGAATGTGAAAAAAAA+TGG + Chr4:69209968-69209987 None:intergenic 20.0%
!! CTTTCTTATCTATTATTGTA+GGG - Chr4:69209440-69209459 MsG0480022166.01.T01:intron 20.0%
!! GGTATTTATGATGATAAATT+AGG - Chr4:69207657-69207676 MsG0480022166.01.T01:three_prime_UTR 20.0%
!! TAAAGGTTGAACATAATAAA+CGG - Chr4:69207846-69207865 MsG0480022166.01.T01:intron 20.0%
!! TCTTTCTTATCTATTATTGT+AGG - Chr4:69209439-69209458 MsG0480022166.01.T01:intron 20.0%
!! TGAATTAGATACCTTTATAA+CGG + Chr4:69209222-69209241 None:intergenic 20.0%
!! TGTCAAAATTATATCCATTA+GGG + Chr4:69207791-69207810 None:intergenic 20.0%
!! TTATTGACAATATCAGATAT+AGG + Chr4:69212563-69212582 None:intergenic 20.0%
!!! AAAATCTAAAACTCAACTAT+AGG - Chr4:69209608-69209627 MsG0480022166.01.T01:intron 20.0%
!!! AATTTTTTCATGGAAAGAAA+AGG + Chr4:69210803-69210822 None:intergenic 20.0%
!!! AGATTTTATTAATTCAACCA+AGG - Chr4:69209354-69209373 MsG0480022166.01.T01:intron 20.0%
!!! ATTTTTTTTCACATTCACAA+TGG - Chr4:69209967-69209986 MsG0480022166.01.T01:intron 20.0%
!!! CTGAAATTGTTTTCTATTTT+AGG + Chr4:69212272-69212291 None:intergenic 20.0%
!!! TAGAATTTTACAGATAAAGA+AGG - Chr4:69209122-69209141 MsG0480022166.01.T01:CDS 20.0%
!!! TTTTCTTTCCATGAAAAAAT+TGG - Chr4:69210802-69210821 MsG0480022166.01.T01:intron 20.0%
! AAAAAATATGTTGAGAATGC+AGG - Chr4:69210214-69210233 MsG0480022166.01.T01:intron 25.0%
! AAAGGTTGAACATAATAAAC+GGG - Chr4:69207847-69207866 MsG0480022166.01.T01:intron 25.0%
! AAATATAGTTGTTGCATTAC+TGG + Chr4:69209070-69209089 None:intergenic 25.0%
! AAATTGTTGTGAAGAAACAA+TGG - Chr4:69210365-69210384 MsG0480022166.01.T01:intron 25.0%
! AATTGCTATATTTATAGGGA+CGG + Chr4:69207697-69207716 None:intergenic 25.0%
! ACAGTTGAAAAATGAGATAA+TGG + Chr4:69208692-69208711 None:intergenic 25.0%
! ACCGTAAAAATTGAATCTTA+GGG + Chr4:69210190-69210209 None:intergenic 25.0%
! CTAAAACAAAAAAAATTGCG+AGG + Chr4:69207761-69207780 None:intergenic 25.0%
! GAAAAATGACCAACATTTAT+TGG - Chr4:69211776-69211795 MsG0480022166.01.T01:intron 25.0%
! TACAATCAACAAGAAGAATA+AGG + Chr4:69211270-69211289 None:intergenic 25.0%
! TACTAAATTTAAGTGCTTTG+TGG - Chr4:69210272-69210291 MsG0480022166.01.T01:intron 25.0%
! TCTTAATGCAAACTTTAACA+TGG + Chr4:69211580-69211599 None:intergenic 25.0%
! TGTCAATAATAAACTCCAAT+TGG - Chr4:69212574-69212593 MsG0480022166.01.T01:intron 25.0%
! TGTGAAAAAAAATGGAATTG+AGG + Chr4:69209960-69209979 None:intergenic 25.0%
! TTAGGGACTAAAATCAAAAT+TGG - Chr4:69207995-69208014 MsG0480022166.01.T01:intron 25.0%
!! ACCCTAAGATTCAATTTTTA+CGG - Chr4:69210186-69210205 MsG0480022166.01.T01:intron 25.0%
!! CAAACGATAACTACATATTT+TGG + Chr4:69211501-69211520 None:intergenic 25.0%
!! CAATAAAATGATGATTTGTC+TGG - Chr4:69207225-69207244 MsG0480022166.01.T01:three_prime_UTR 25.0%
!! GAAGTGTTTATTAGCTTATT+TGG - Chr4:69209998-69210017 MsG0480022166.01.T01:intron 25.0%
!! TGAAATTTGCATATTTTGCA+AGG - Chr4:69210839-69210858 MsG0480022166.01.T01:intron 25.0%
!!! AAAACTCTCCAATTTTTTCA+TGG + Chr4:69210813-69210832 None:intergenic 25.0%
!!! AGAAAAAGTATTCCTTTTGA+AGG - Chr4:69207381-69207400 MsG0480022166.01.T01:three_prime_UTR 25.0%
!!! TGCAAAACATTTGCTTTTTT+TGG - Chr4:69209530-69209549 MsG0480022166.01.T01:intron 25.0%
!!! TTAGTTCTACCTTAGATTAA+TGG - Chr4:69207135-69207154 MsG0480022166.01.T01:three_prime_UTR 25.0%
!!! TTTTTTATTTTCCTGCTTGT+AGG - Chr4:69207199-69207218 MsG0480022166.01.T01:three_prime_UTR 25.0%
AAAAAAAACCATGAGCTACT+TGG + Chr4:69209884-69209903 None:intergenic 30.0%
AAAAATGTAAGCCTAGTATG+AGG + Chr4:69208521-69208540 None:intergenic 30.0%
AAAATACTAACGCTTGAGTA+GGG - Chr4:69211152-69211171 MsG0480022166.01.T01:intron 30.0%
AAAATTGAATCTTAGGGTGA+TGG + Chr4:69210184-69210203 None:intergenic 30.0%
AAACAGACAACAGCTATAAT+AGG + Chr4:69208132-69208151 None:intergenic 30.0%
AAATTGAATCTTAGGGTGAT+GGG + Chr4:69210183-69210202 None:intergenic 30.0%
AACAAGAATGCTCTTATGAA+TGG - Chr4:69212356-69212375 MsG0480022166.01.T01:intron 30.0%
AACAGACAACAGCTATAATA+GGG + Chr4:69208131-69208150 None:intergenic 30.0%
AGAAAAGGCAACATAATACA+TGG + Chr4:69210788-69210807 None:intergenic 30.0%
AGCAAGTCATTGTGTTTAAA+TGG - Chr4:69209919-69209938 MsG0480022166.01.T01:intron 30.0%
AGGAACTTCAAAGTTACATA+GGG - Chr4:69212451-69212470 MsG0480022166.01.T01:intron 30.0%
ATAGAGAAGATTGGATTTGA+TGG - Chr4:69207571-69207590 MsG0480022166.01.T01:three_prime_UTR 30.0%
ATAGCCTATACAAGAATCAA+GGG + Chr4:69209853-69209872 None:intergenic 30.0%
ATGGAAAAGACAGTAAAGAT+TGG - Chr4:69207345-69207364 MsG0480022166.01.T01:three_prime_UTR 30.0%
ATTGAGACTAACTTTGTGAA+AGG - Chr4:69211898-69211917 MsG0480022166.01.T01:intron 30.0%
CACCGTAAAAATTGAATCTT+AGG + Chr4:69210191-69210210 None:intergenic 30.0%
CATACCTCATTTATTTATGG+TGG - Chr4:69210956-69210975 MsG0480022166.01.T01:CDS 30.0%
CTATAATAGGGAAAAACACA+GGG + Chr4:69208119-69208138 None:intergenic 30.0%
CTGCAAAATAAGCAACTATT+TGG + Chr4:69208583-69208602 None:intergenic 30.0%
GATAGTAGAAAATTCACTAG+AGG + Chr4:69210761-69210780 None:intergenic 30.0%
GGTATGAATCAGTTGAATTT+CGG + Chr4:69211391-69211410 None:intergenic 30.0%
TAGAGAAGATTGGATTTGAT+GGG - Chr4:69207572-69207591 MsG0480022166.01.T01:three_prime_UTR 30.0%
TAGGAACTTCAAAGTTACAT+AGG - Chr4:69212450-69212469 MsG0480022166.01.T01:intron 30.0%
TCATTGTGTTTAAATGGAAC+TGG - Chr4:69209925-69209944 MsG0480022166.01.T01:intron 30.0%
TCCAACAAAACCAATAACAA+AGG + Chr4:69209798-69209817 None:intergenic 30.0%
TCTTATGAATGGAAAAGTCA+CGG - Chr4:69212367-69212386 MsG0480022166.01.T01:intron 30.0%
TGCAATCAAGACATTTGAAA+AGG + Chr4:69210346-69210365 None:intergenic 30.0%
TGGAAAAGACAGTAAAGATT+GGG - Chr4:69207346-69207365 MsG0480022166.01.T01:three_prime_UTR 30.0%
TGTTCCACCATAAATAAATG+AGG + Chr4:69210963-69210982 None:intergenic 30.0%
TTAGTCATTTGACTAGCAAT+GGG + Chr4:69209394-69209413 None:intergenic 30.0%
TTGACTGTACTTCATTGAAT+GGG - Chr4:69211056-69211075 MsG0480022166.01.T01:intron 30.0%
TTTAGTCATTTGACTAGCAA+TGG + Chr4:69209395-69209414 None:intergenic 30.0%
TTTATATGGTGTACTGTGTT+GGG - Chr4:69208812-69208831 MsG0480022166.01.T01:intron 30.0%
TTTGACTGTACTTCATTGAA+TGG - Chr4:69211055-69211074 MsG0480022166.01.T01:intron 30.0%
! AAAAGCAAATGTTTTGCATG+TGG + Chr4:69209528-69209547 None:intergenic 30.0%
! AAAAGTTCTTTTGCACTAGA+TGG + Chr4:69209714-69209733 None:intergenic 30.0%
! AAATCCTATTTCTCTGAAGA+GGG - Chr4:69207321-69207340 MsG0480022166.01.T01:three_prime_UTR 30.0%
! GGCTTACATTTTTCTATCTT+TGG - Chr4:69208528-69208547 MsG0480022166.01.T01:intron 30.0%
! GTTTGACAATGCTAAAGTTT+TGG - Chr4:69208223-69208242 MsG0480022166.01.T01:intron 30.0%
! TATGAAGATCTTTTGAATGC+TGG - Chr4:69212105-69212124 MsG0480022166.01.T01:CDS 30.0%
! TATTTCTGTACAGATTGACA+GGG - Chr4:69208151-69208170 MsG0480022166.01.T01:intron 30.0%
! TTTTATATGGTGTACTGTGT+TGG - Chr4:69208811-69208830 MsG0480022166.01.T01:intron 30.0%
!! AAAGTATTCCTTTTGAAGGA+AGG - Chr4:69207385-69207404 MsG0480022166.01.T01:three_prime_UTR 30.0%
!! AAGAAGCAGTTGATAAGTAA+AGG + Chr4:69209298-69209317 None:intergenic 30.0%
!! AAGTATTCCTTTTGAAGGAA+GGG - Chr4:69207386-69207405 MsG0480022166.01.T01:three_prime_UTR 30.0%
!! AGAAGCAGTTGATAAGTAAA+GGG + Chr4:69209297-69209316 None:intergenic 30.0%
!! CAATGCTAAAGTTTTGGTAA+CGG - Chr4:69208229-69208248 MsG0480022166.01.T01:intron 30.0%
!! GTCTTACTTTGCTATTTCTT+TGG - Chr4:69211078-69211097 MsG0480022166.01.T01:intron 30.0%
!! TATTTTAGGGAGTTATACCA+GGG + Chr4:69212258-69212277 None:intergenic 30.0%
!! TTATTTCTGTACAGATTGAC+AGG - Chr4:69208150-69208169 MsG0480022166.01.T01:intron 30.0%
!!! ACATTTTTAGTTGGACAGTA+TGG - Chr4:69208644-69208663 MsG0480022166.01.T01:intron 30.0%
!!! TTGTTATTGGTTTTGTTGGA+TGG - Chr4:69209798-69209817 MsG0480022166.01.T01:intron 30.0%
AAAAATATTCAGACTCGGAG+AGG + Chr4:69210721-69210740 None:intergenic 35.0%
AAAATATTCAGACTCGGAGA+GGG + Chr4:69210720-69210739 None:intergenic 35.0%
AAACAACTGCAGATATGTTG+AGG + Chr4:69211192-69211211 None:intergenic 35.0%
AAACACTAAGGCTGAAATTC+AGG - Chr4:69209098-69209117 MsG0480022166.01.T01:CDS 35.0%
AAATACTAACGCTTGAGTAG+GGG - Chr4:69211153-69211172 MsG0480022166.01.T01:intron 35.0%
AAATCAATTGCAGCTAATGC+TGG - Chr4:69212006-69212025 MsG0480022166.01.T01:intron 35.0%
AATTGCATCGGAAAGCTATA+TGG + Chr4:69207072-69207091 None:intergenic 35.0%
ACCCTGGATATAATTCAGTT+TGG - Chr4:69211408-69211427 MsG0480022166.01.T01:CDS 35.0%
AGAAGACTAGAACATTTGAC+TGG - Chr4:69212053-69212072 MsG0480022166.01.T01:intron 35.0%
AGAGAAGATTGGATTTGATG+GGG - Chr4:69207573-69207592 MsG0480022166.01.T01:three_prime_UTR 35.0%
AGCCAAACTGAATTATATCC+AGG + Chr4:69211413-69211432 None:intergenic 35.0%
AGTCTCAATCCTACAAGAAA+AGG + Chr4:69211887-69211906 None:intergenic 35.0%
ATAGGGAGTTGAATAGTGTT+AGG - Chr4:69212468-69212487 MsG0480022166.01.T01:intron 35.0%
ATATGATCCCTTCCTTCAAA+AGG + Chr4:69207396-69207415 None:intergenic 35.0%
ATCTTCCATGGAGTTCTTTA+TGG + Chr4:69210627-69210646 None:intergenic 35.0%
ATGGGAACAAAAGACATTTG+AGG + Chr4:69208864-69208883 None:intergenic 35.0%
ATTCGATGATGAATGTCCAT+TGG - Chr4:69212312-69212331 MsG0480022166.01.T01:intron 35.0%
ATTGCATCGGAAAGCTATAT+GGG + Chr4:69207071-69207090 None:intergenic 35.0%
ATTTAATAAACCCCCCAAGA+TGG - Chr4:69210120-69210139 MsG0480022166.01.T01:intron 35.0%
ATTTCTGTACAGATTGACAG+GGG - Chr4:69208152-69208171 MsG0480022166.01.T01:intron 35.0%
CAAAGAAATAGTTCCTTTGC+TGG - Chr4:69208271-69208290 MsG0480022166.01.T01:intron 35.0%
CACATTCACAATGGAGAATT+TGG - Chr4:69209976-69209995 MsG0480022166.01.T01:intron 35.0%
CATAATAAACGGGCATAACA+TGG - Chr4:69207857-69207876 MsG0480022166.01.T01:intron 35.0%
CATAGCCTATACAAGAATCA+AGG + Chr4:69209854-69209873 None:intergenic 35.0%
CATTTACCAATTGTGTAGGT+AGG - Chr4:69210464-69210483 MsG0480022166.01.T01:intron 35.0%
CATTTATTGGGCTATTTGCT+AGG - Chr4:69211789-69211808 MsG0480022166.01.T01:intron 35.0%
CCTACTGCATTTGATAAACT+CGG - Chr4:69208476-69208495 MsG0480022166.01.T01:intron 35.0%
CCTGTGATATTAAAGTCAAC+AGG + Chr4:69208961-69208980 None:intergenic 35.0%
GAAAATACTAACGCTTGAGT+AGG - Chr4:69211151-69211170 MsG0480022166.01.T01:intron 35.0%
GATGCATTTACCAATTGTGT+AGG - Chr4:69210460-69210479 MsG0480022166.01.T01:intron 35.0%
GCAAATAGCCCAATAAATGT+TGG + Chr4:69211788-69211807 None:intergenic 35.0%
GCCAAACTGAATTATATCCA+GGG + Chr4:69211412-69211431 None:intergenic 35.0%
GCTATAATAGGGAAAAACAC+AGG + Chr4:69208120-69208139 None:intergenic 35.0%
GTAGTTTCATAAGCCATCTT+GGG + Chr4:69210136-69210155 None:intergenic 35.0%
GTATCCCTTGATTCTTGTAT+AGG - Chr4:69209846-69209865 MsG0480022166.01.T01:intron 35.0%
GTGATATTAAAGTCAACAGG+AGG + Chr4:69208958-69208977 None:intergenic 35.0%
GTGTGAATCTATTCTATCGA+AGG + Chr4:69211324-69211343 None:intergenic 35.0%
TAAGGTAGAACTAACAACCA+TGG + Chr4:69207129-69207148 None:intergenic 35.0%
TACAAGATATTGCGCTATGA+CGG - Chr4:69208446-69208465 MsG0480022166.01.T01:intron 35.0%
TAGTTTCATAAGCCATCTTG+GGG + Chr4:69210135-69210154 None:intergenic 35.0%
TCAATCCTACAAGAAAAGGA+GGG + Chr4:69211883-69211902 None:intergenic 35.0%
TGAAAAACTCAGACAGCATT+GGG + Chr4:69207437-69207456 None:intergenic 35.0%
TGAATTTCAGCCTTAGTGTT+TGG + Chr4:69209099-69209118 None:intergenic 35.0%
TGACTTTAATATCACAGGTG+CGG - Chr4:69208963-69208982 MsG0480022166.01.T01:intron 35.0%
TGTGTTTAAATGGAACTGGA+TGG - Chr4:69209929-69209948 MsG0480022166.01.T01:intron 35.0%
TTATCGTTTGATCCATTTCC+TGG - Chr4:69211511-69211530 MsG0480022166.01.T01:CDS 35.0%
TTCAGTACTCGAGATATTAG+CGG + Chr4:69212652-69212671 None:intergenic 35.0%
TTCGATGATGAATGTCCATT+GGG - Chr4:69212313-69212332 MsG0480022166.01.T01:intron 35.0%
TTGAAAAACTCAGACAGCAT+TGG + Chr4:69207438-69207457 None:intergenic 35.0%
! AATGATGATTTGTCTGGTGA+TGG - Chr4:69207231-69207250 MsG0480022166.01.T01:three_prime_UTR 35.0%
! AATTCAACTGATTCATACCC+TGG - Chr4:69211392-69211411 MsG0480022166.01.T01:CDS 35.0%
! ACTTTTGCTGCCATAAATGA+GGG - Chr4:69210548-69210567 MsG0480022166.01.T01:CDS 35.0%
! ATTTGCTGATCCAAACACTA+AGG - Chr4:69209086-69209105 MsG0480022166.01.T01:CDS 35.0%
! CAAATCCTATTTCTCTGAAG+AGG - Chr4:69207320-69207339 MsG0480022166.01.T01:three_prime_UTR 35.0%
! GATTTTCTCTGTGGAGATTT+GGG - Chr4:69208985-69209004 MsG0480022166.01.T01:intron 35.0%
! GCTTCATGCATTTTAAACCA+CGG + Chr4:69211641-69211660 None:intergenic 35.0%
! GTACCACACTGCAATTATTT+TGG - Chr4:69207253-69207272 MsG0480022166.01.T01:three_prime_UTR 35.0%
! GTGCAAAAGAACTTTTGTTG+TGG - Chr4:69209718-69209737 MsG0480022166.01.T01:intron 35.0%
! GTTCTGAGTTCAATGACATT+GGG - Chr4:69209462-69209481 MsG0480022166.01.T01:intron 35.0%
! TACTTTTGCTGCCATAAATG+AGG - Chr4:69210547-69210566 MsG0480022166.01.T01:CDS 35.0%
! TTAGCTGCAATTGATTTAGC+AGG + Chr4:69212003-69212022 None:intergenic 35.0%
! TTTTATTGCAACCTACAAGC+AGG + Chr4:69207213-69207232 None:intergenic 35.0%
!! AGTTGATAAGTAAAGGGTCA+AGG + Chr4:69209291-69209310 None:intergenic 35.0%
!! CATTGGGTTGATTAGTACTT+GGG - Chr4:69212329-69212348 MsG0480022166.01.T01:intron 35.0%
!! CCTGTTGACTTTAATATCAC+AGG - Chr4:69208958-69208977 MsG0480022166.01.T01:intron 35.0%
!! CGAGTACTGAAATCTATTGA+AGG - Chr4:69212661-69212680 MsG0480022166.01.T01:CDS 35.0%
!! CTATTTTAGGGAGTTATACC+AGG + Chr4:69212259-69212278 None:intergenic 35.0%
!! TAACTGTTGGCCTTTGTTAT+TGG - Chr4:69209785-69209804 MsG0480022166.01.T01:intron 35.0%
!! TATTCTTCCCTGCTACTTTA+GGG - Chr4:69211239-69211258 MsG0480022166.01.T01:intron 35.0%
!! TTTAAACCACGGTATTGACA+CGG + Chr4:69211630-69211649 None:intergenic 35.0%
!!! ATTATCAGCAGTTGCTTTTG+GGG - Chr4:69207297-69207316 MsG0480022166.01.T01:three_prime_UTR 35.0%
!!! GATTATCAGCAGTTGCTTTT+GGG - Chr4:69207296-69207315 MsG0480022166.01.T01:three_prime_UTR 35.0%
!!! GCCTTTGTTATTGGTTTTGT+TGG - Chr4:69209794-69209813 MsG0480022166.01.T01:intron 35.0%
!!! GTTTTAGTTTTGGTCCCTAA+TGG - Chr4:69207774-69207793 MsG0480022166.01.T01:intron 35.0%
!!! TGGTCATTTTTCTCTCCTAA+GGG + Chr4:69211768-69211787 None:intergenic 35.0%
!!! TTGGTCATTTTTCTCTCCTA+AGG + Chr4:69211769-69211788 None:intergenic 35.0%
AAATATTCAGACTCGGAGAG+GGG + Chr4:69210719-69210738 None:intergenic 40.0%
AACAAAGAGGGAACAGCTTA+TGG + Chr4:69210159-69210178 None:intergenic 40.0%
AACACATTTCCAGCTTTGCT+TGG - Chr4:69208928-69208947 MsG0480022166.01.T01:intron 40.0%
AACTTGAGGATAGAAAGCTG+AGG - Chr4:69210504-69210523 MsG0480022166.01.T01:intron 40.0%
AATCGATACAATGCCATGAC+TGG - Chr4:69212078-69212097 MsG0480022166.01.T01:CDS 40.0%
ACAAAGAGGGAACAGCTTAT+GGG + Chr4:69210158-69210177 None:intergenic 40.0%
ACAAGATATTGCGCTATGAC+GGG - Chr4:69208447-69208466 MsG0480022166.01.T01:intron 40.0%
ACATACATGTCCTGTCATCA+TGG - Chr4:69209246-69209265 MsG0480022166.01.T01:intron 40.0%
ACCAGCATTCTCAATTGCAT+CGG + Chr4:69207084-69207103 None:intergenic 40.0%
AGAGAATTGCGAAACTCACT+GGG - Chr4:69209190-69209209 MsG0480022166.01.T01:CDS 40.0%
AGCATTGTCAAACTCCACAA+TGG + Chr4:69208216-69208235 None:intergenic 40.0%
AGGAACAAGTCCCTCATTTA+TGG + Chr4:69210561-69210580 None:intergenic 40.0%
AGTTGTGCATGAATCATTGC+AGG - Chr4:69211966-69211985 MsG0480022166.01.T01:intron 40.0%
AGTTTCATAAGCCATCTTGG+GGG + Chr4:69210134-69210153 None:intergenic 40.0%
ATACGATCGTTGCAAGACAT+GGG + Chr4:69208882-69208901 None:intergenic 40.0%
ATCTTCATATGTGCCAGTCA+TGG + Chr4:69212094-69212113 None:intergenic 40.0%
ATTTGCTCTCAGATCTTCCA+TGG + Chr4:69210639-69210658 None:intergenic 40.0%
CAACCAGGAAAAATCCATTG+TGG - Chr4:69208199-69208218 MsG0480022166.01.T01:intron 40.0%
CAATCCTACAAGAAAAGGAG+GGG + Chr4:69211882-69211901 None:intergenic 40.0%
CACGAAGCATAGGAACAATT+AGG - Chr4:69212431-69212450 MsG0480022166.01.T01:intron 40.0%
CATACATGTCCTGTCATCAT+GGG - Chr4:69209247-69209266 MsG0480022166.01.T01:intron 40.0%
CATTCCCTCTTCAGAGAAAT+AGG + Chr4:69207328-69207347 None:intergenic 40.0%
CCAAGTACTAATCAACCCAA+TGG + Chr4:69212331-69212350 None:intergenic 40.0%
CCGAGTTTATCAAATGCAGT+AGG + Chr4:69208479-69208498 None:intergenic 40.0%
CCTCTGTGGTAATTGAAGAA+GGG - Chr4:69207629-69207648 MsG0480022166.01.T01:three_prime_UTR 40.0%
CCTTCTTCAATTACCACAGA+GGG + Chr4:69207631-69207650 None:intergenic 40.0%
CGTCAGTTGACTGTTAATAG+AGG - Chr4:69208759-69208778 MsG0480022166.01.T01:intron 40.0%
CTCAATCCTACAAGAAAAGG+AGG + Chr4:69211884-69211903 None:intergenic 40.0%
GAAAAACTCAGACAGCATTG+GGG + Chr4:69207436-69207455 None:intergenic 40.0%
GAAGGAAGGGATCATATCAA+AGG - Chr4:69207399-69207418 MsG0480022166.01.T01:three_prime_UTR 40.0%
GAGCCAAAATAATTGCAGTG+TGG + Chr4:69207259-69207278 None:intergenic 40.0%
GATTTGGGTCTTACACTTGA+AGG - Chr4:69209000-69209019 MsG0480022166.01.T01:intron 40.0%
GCTGAAGCTATAGAGAAGAT+TGG - Chr4:69207562-69207581 MsG0480022166.01.T01:three_prime_UTR 40.0%
GGACATGATCATTCAGATCT+GGG + Chr4:69208098-69208117 None:intergenic 40.0%
GGCACACTTAAACATCCAAT+TGG + Chr4:69212592-69212611 None:intergenic 40.0%
GGTAATTGAAGAAGGGATGA+AGG - Chr4:69207636-69207655 MsG0480022166.01.T01:three_prime_UTR 40.0%
GGTAGTTTCATAAGCCATCT+TGG + Chr4:69210137-69210156 None:intergenic 40.0%
TAGCAATGGGACATCTTCTT+CGG + Chr4:69209381-69209400 None:intergenic 40.0%
TCCTATGCTTCGTGATACAT+GGG + Chr4:69212425-69212444 None:intergenic 40.0%
TCCTCCGCAATAATTAAGAG+CGG + Chr4:69208320-69208339 None:intergenic 40.0%
TGCTCCGCTCTTAATTATTG+CGG - Chr4:69208313-69208332 MsG0480022166.01.T01:intron 40.0%
TGGAAGATCTGAGAGCAAAT+TGG - Chr4:69210639-69210658 MsG0480022166.01.T01:CDS 40.0%
TGGTTTCTCCATCTACAATG+TGG + Chr4:69211542-69211561 None:intergenic 40.0%
TTCCTATGCTTCGTGATACA+TGG + Chr4:69212426-69212445 None:intergenic 40.0%
! ATAAATGAGGGACTTGTTCC+TGG - Chr4:69210560-69210579 MsG0480022166.01.T01:CDS 40.0%
! ATTTTTCTCTCCTAAGGGAC+AGG + Chr4:69211763-69211782 None:intergenic 40.0%
! CTATTTCTCTGAAGAGGGAA+TGG - Chr4:69207326-69207345 MsG0480022166.01.T01:three_prime_UTR 40.0%
! GGATTTTCTCTGTGGAGATT+TGG - Chr4:69208984-69209003 MsG0480022166.01.T01:intron 40.0%
! TCTTTTGCACTAGATGGAGT+TGG + Chr4:69209708-69209727 None:intergenic 40.0%
! TTTTCCCCTCCTTTTCTTGT+AGG - Chr4:69211875-69211894 MsG0480022166.01.T01:intron 40.0%
! TTTTTCTCTCCTAAGGGACA+GGG + Chr4:69211762-69211781 None:intergenic 40.0%
!! ACTCCACAATGGATTTTTCC+TGG + Chr4:69208205-69208224 None:intergenic 40.0%
!! AGCTGAGATTCTAGAGTACT+TGG + Chr4:69211464-69211483 None:intergenic 40.0%
!! CACAATGGATTTTTCCTGGT+TGG + Chr4:69208201-69208220 None:intergenic 40.0%
!! CCATTGGGTTGATTAGTACT+TGG - Chr4:69212328-69212347 MsG0480022166.01.T01:intron 40.0%
!! GCAAATTGGTGCTGATATTG+TGG - Chr4:69210653-69210672 MsG0480022166.01.T01:CDS 40.0%
!! GGATTATCAGCAGTTGCTTT+TGG - Chr4:69207295-69207314 MsG0480022166.01.T01:three_prime_UTR 40.0%
!! GGTTCTGAGTTCAATGACAT+TGG - Chr4:69209461-69209480 MsG0480022166.01.T01:intron 40.0%
!! GGTTGCTGTTTCTTACTCTT+GGG - Chr4:69212388-69212407 MsG0480022166.01.T01:intron 40.0%
!! GTATTCTTCCCTGCTACTTT+AGG - Chr4:69211238-69211257 MsG0480022166.01.T01:intron 40.0%
!! GTTGCTGTTTCTTACTCTTG+GGG - Chr4:69212389-69212408 MsG0480022166.01.T01:intron 40.0%
!! TGCATAGCTTTTTCCAGCAA+AGG + Chr4:69208287-69208306 None:intergenic 40.0%
!! TTAAACCACGGTATTGACAC+GGG + Chr4:69211629-69211648 None:intergenic 40.0%
AACATTCTTGCGTGAGGGTT+TGG - Chr4:69209565-69209584 MsG0480022166.01.T01:intron 45.0%
AATGTGGACCATCCAGGAAA+TGG + Chr4:69211526-69211545 None:intergenic 45.0%
ACACACTGAGCTAGAACTTG+AGG - Chr4:69210490-69210509 MsG0480022166.01.T01:intron 45.0%
ACCCATGTATCACGAAGCAT+AGG - Chr4:69212421-69212440 MsG0480022166.01.T01:intron 45.0%
ACCTGCCATAAAGAACTCCA+TGG - Chr4:69210619-69210638 MsG0480022166.01.T01:CDS 45.0%
ACGTACTGAAACAACCGCTA+GGG + Chr4:69208742-69208761 None:intergenic 45.0%
ACTAGCAACATTCTTGCGTG+AGG - Chr4:69209559-69209578 MsG0480022166.01.T01:intron 45.0%
AGATGATGAGGATGACTCGA+TGG + Chr4:69207605-69207624 None:intergenic 45.0%
AGGCTTATCCCTAAAGTAGC+AGG + Chr4:69211250-69211269 None:intergenic 45.0%
AGTTAGAACCACGCTAGCAA+TGG + Chr4:69212181-69212200 None:intergenic 45.0%
ATCTACAATGTGGACCATCC+AGG + Chr4:69211532-69211551 None:intergenic 45.0%
CAGGTATCAAGTCCAAAAGG+TGG + Chr4:69210604-69210623 None:intergenic 45.0%
CATACGATCGTTGCAAGACA+TGG + Chr4:69208883-69208902 None:intergenic 45.0%
CATGTCTTGCAACGATCGTA+TGG - Chr4:69208881-69208900 MsG0480022166.01.T01:intron 45.0%
CCAAGATTACAATCCCCTAG+CGG - Chr4:69208725-69208744 MsG0480022166.01.T01:intron 45.0%
CCCTCTGTGGTAATTGAAGA+AGG - Chr4:69207628-69207647 MsG0480022166.01.T01:three_prime_UTR 45.0%
CCCTTCTTCAATTACCACAG+AGG + Chr4:69207632-69207651 None:intergenic 45.0%
CGTTTGATCCATTTCCTGGA+TGG - Chr4:69211515-69211534 MsG0480022166.01.T01:CDS 45.0%
CTAATTCAAGAGGTCGACCA+TGG - Chr4:69207109-69207128 MsG0480022166.01.T01:three_prime_UTR 45.0%
CTAGCAACATTCTTGCGTGA+GGG - Chr4:69209560-69209579 MsG0480022166.01.T01:intron 45.0%
CTGGGGTATAGCCGTTATAA+AGG - Chr4:69209208-69209227 MsG0480022166.01.T01:CDS 45.0%
CTGGTCCATGCTAATTCAAG+AGG - Chr4:69207099-69207118 MsG0480022166.01.T01:three_prime_UTR 45.0%
CTTTCATTGCAGTACCAAGC+TGG + Chr4:69209038-69209057 None:intergenic 45.0%
GAGAATTGCGAAACTCACTG+GGG - Chr4:69209191-69209210 MsG0480022166.01.T01:CDS 45.0%
GAGAGAATTGCGAAACTCAC+TGG - Chr4:69209189-69209208 MsG0480022166.01.T01:CDS 45.0%
GAGAGCAAATTCCATGACAC+TGG + Chr4:69212613-69212632 None:intergenic 45.0%
GCAAACTTTAACATGGACCG+TGG + Chr4:69211573-69211592 None:intergenic 45.0%
GCATGAAACCAAGTAGCTCA+TGG - Chr4:69209873-69209892 MsG0480022166.01.T01:intron 45.0%
GCTGTAAAATGTCCAGGACT+CGG - Chr4:69208403-69208422 MsG0480022166.01.T01:intron 45.0%
GGATAGAAAGCTGAGGATTG+AGG - Chr4:69210511-69210530 MsG0480022166.01.T01:intron 45.0%
GGCTCTCGCTATGATTAATC+TGG - Chr4:69207274-69207293 MsG0480022166.01.T01:three_prime_UTR 45.0%
GGCTTATCCCTAAAGTAGCA+GGG + Chr4:69211249-69211268 None:intergenic 45.0%
GGGACATGATCATTCAGATC+TGG + Chr4:69208099-69208118 None:intergenic 45.0%
GGGTCAAGGTGATCAGAATA+AGG + Chr4:69209277-69209296 None:intergenic 45.0%
GTCCAAAAGGTGGACATATG+TGG + Chr4:69210594-69210613 None:intergenic 45.0%
GTCGACCTCTTGAATTAGCA+TGG + Chr4:69207107-69207126 None:intergenic 45.0%
GTTGCAGCTGTAAAATGTCC+AGG - Chr4:69208397-69208416 MsG0480022166.01.T01:intron 45.0%
GTTTAAGTGTGCCAGTGTCA+TGG - Chr4:69212599-69212618 MsG0480022166.01.T01:intron 45.0%
GTTTCATAAGCCATCTTGGG+GGG + Chr4:69210133-69210152 None:intergenic 45.0%
TAACTCAGATGCAAACACGC+AGG + Chr4:69211726-69211745 None:intergenic 45.0%
TAAGCCTAGTATGAGGAAGC+TGG + Chr4:69208514-69208533 None:intergenic 45.0%
TCCATGGAGTTCTTTATGGC+AGG + Chr4:69210623-69210642 None:intergenic 45.0%
TCCGATGCAATTGAGAATGC+TGG - Chr4:69207080-69207099 MsG0480022166.01.T01:three_prime_UTR 45.0%
TCCGCTCTTAATTATTGCGG+AGG - Chr4:69208316-69208335 MsG0480022166.01.T01:intron 45.0%
TCCTTACTTCATCACCAACC+AGG - Chr4:69208184-69208203 MsG0480022166.01.T01:intron 45.0%
TGCTGGAATGACGAGTATGT+TGG - Chr4:69207529-69207548 MsG0480022166.01.T01:three_prime_UTR 45.0%
TGGATGGTCCACATTGTAGA+TGG - Chr4:69211531-69211550 MsG0480022166.01.T01:CDS 45.0%
TGGCAGGTATCAAGTCCAAA+AGG + Chr4:69210607-69210626 None:intergenic 45.0%
TGTGCACCTACCTACACAAT+TGG + Chr4:69210473-69210492 None:intergenic 45.0%
! GAGAAACCACTGACTATCCA+CGG - Chr4:69211553-69211572 MsG0480022166.01.T01:intron 45.0%
! TCTCTGAGAGCTTTCTCGAA+TGG + Chr4:69209173-69209192 None:intergenic 45.0%
! TGCCACATATGTCCACCTTT+TGG - Chr4:69210589-69210608 MsG0480022166.01.T01:CDS 45.0%
!! AGGGTGATGGGAAACAAAGA+GGG + Chr4:69210171-69210190 None:intergenic 45.0%
!! CGGTTGCTGTTTCTTACTCT+TGG - Chr4:69212387-69212406 MsG0480022166.01.T01:intron 45.0%
!! TAAACCACGGTATTGACACG+GGG + Chr4:69211628-69211647 None:intergenic 45.0%
!! TAGGGTGATGGGAAACAAAG+AGG + Chr4:69210172-69210191 None:intergenic 45.0%
!! TCCTGGTTGGTGATGAAGTA+AGG + Chr4:69208188-69208207 None:intergenic 45.0%
!! AACTATTATTAAAAATTATT+AGG + Chr4:69208050-69208069 None:intergenic 5.0%
!! ACTATTATTAAAAATTATTA+GGG + Chr4:69208049-69208068 None:intergenic 5.0%
AAATGTCCAGGACTCGGAGA+TGG - Chr4:69208409-69208428 MsG0480022166.01.T01:intron 50.0%
AGGGACAGGGTTAGGCTATA+TGG + Chr4:69211749-69211768 None:intergenic 50.0%
ATAGCCTAACCCTGTCCCTT+AGG - Chr4:69211750-69211769 MsG0480022166.01.T01:intron 50.0%
CACAGAGGGTTCAGATGATG+AGG + Chr4:69207617-69207636 None:intergenic 50.0%
CCGCTAGGGGATTGTAATCT+TGG + Chr4:69208728-69208747 None:intergenic 50.0%
CGTACTGAAACAACCGCTAG+GGG + Chr4:69208741-69208760 None:intergenic 50.0%
CGTCATTCCAGCAGAAATCG+AGG + Chr4:69207522-69207541 None:intergenic 50.0%
CTCATCATCTGAACCCTCTG+TGG - Chr4:69207615-69207634 MsG0480022166.01.T01:three_prime_UTR 50.0%
CTTTGATTACAGCTCCCCTC+TGG - Chr4:69211677-69211696 MsG0480022166.01.T01:intron 50.0%
GACGTACTGAAACAACCGCT+AGG + Chr4:69208743-69208762 None:intergenic 50.0%
GCACATCTTGCAACTCGACT+AGG + Chr4:69212141-69212160 None:intergenic 50.0%
GCAGCTAATGCTGGAGTTGA+TGG - Chr4:69212015-69212034 MsG0480022166.01.T01:intron 50.0%
GGTACAACATCAGACCAGCT+TGG - Chr4:69209021-69209040 MsG0480022166.01.T01:intron 50.0%
GTACTCGAGATATTAGCGGC+TGG + Chr4:69212648-69212667 None:intergenic 50.0%
GTTGGACAGTATGGCTGTCT+TGG - Chr4:69208653-69208672 MsG0480022166.01.T01:intron 50.0%
TAAGGACAGCCCATGATGAC+AGG + Chr4:69209259-69209278 None:intergenic 50.0%
TCTGCCAGCTTCCTCATACT+AGG - Chr4:69208507-69208526 MsG0480022166.01.T01:intron 50.0%
TTCTTTCCATCTCCGAGTCC+TGG + Chr4:69208418-69208437 None:intergenic 50.0%
! AATGAGGGACTTGTTCCTGG+AGG - Chr4:69210563-69210582 MsG0480022166.01.T01:CDS 50.0%
! ACAGGTGCGGATTTTCTCTG+TGG - Chr4:69208976-69208995 MsG0480022166.01.T01:intron 50.0%
! ATGAGGGACTTGTTCCTGGA+GGG - Chr4:69210564-69210583 MsG0480022166.01.T01:CDS 50.0%
!! AAACCACGGTATTGACACGG+GGG + Chr4:69211627-69211646 None:intergenic 50.0%
!! TGGTGCTGATATTGTGGCGA+AGG - Chr4:69210659-69210678 MsG0480022166.01.T01:CDS 50.0%
ACATACCCCTCAGTTGCCAG+AGG + Chr4:69211696-69211715 None:intergenic 55.0%
AGGCTACAGCTGCACAAGGT+GGG + Chr4:69207502-69207521 None:intergenic 55.0%
ATACCCCTCAGTTGCCAGAG+GGG + Chr4:69211694-69211713 None:intergenic 55.0%
ATCGAGGCTACAGCTGCACA+AGG + Chr4:69207506-69207525 None:intergenic 55.0%
CATACCCCTCAGTTGCCAGA+GGG + Chr4:69211695-69211714 None:intergenic 55.0%
CATGGACCGTGGATAGTCAG+TGG + Chr4:69211562-69211581 None:intergenic 55.0%
CTCTCCTAAGGGACAGGGTT+AGG + Chr4:69211757-69211776 None:intergenic 55.0%
GCTGTAGCCTCGATTTCTGC+TGG - Chr4:69207512-69207531 MsG0480022166.01.T01:three_prime_UTR 55.0%
GGACGTCACTGCACAAGTGT+TGG - Chr4:69208337-69208356 MsG0480022166.01.T01:intron 55.0%
GGAGGTCAACCAAGCAAAGC+TGG + Chr4:69208940-69208959 None:intergenic 55.0%
GGAGTTATACCAGGGACCAG+AGG + Chr4:69212250-69212269 None:intergenic 55.0%
GGGACATCTTCTTCGGTCCT+TGG + Chr4:69209374-69209393 None:intergenic 55.0%
TGCAGTCTCCATTGCTAGCG+TGG - Chr4:69212170-69212189 MsG0480022166.01.T01:CDS 55.0%
! ACCAGAGGTACACGTGGCTT+GGG + Chr4:69212235-69212254 None:intergenic 55.0%
! TGAGGGACTTGTTCCTGGAG+GGG - Chr4:69210565-69210584 MsG0480022166.01.T01:CDS 55.0%
ACATATGTGGCACCCCCTCC+AGG + Chr4:69210581-69210600 None:intergenic 60.0%
ACCCAAGCCACGTGTACCTC+TGG - Chr4:69212231-69212250 MsG0480022166.01.T01:intron 60.0%
AGCTCCCCTCTGGCAACTGA+GGG - Chr4:69211687-69211706 MsG0480022166.01.T01:intron 60.0%
CACGGGGGAGGAAGGATGAA+TGG + Chr4:69211612-69211631 None:intergenic 60.0%
GAGGCTACAGCTGCACAAGG+TGG + Chr4:69207503-69207522 None:intergenic 60.0%
GGCTACAGCTGCACAAGGTG+GGG + Chr4:69207501-69207520 None:intergenic 60.0%
! GACCAGAGGTACACGTGGCT+TGG + Chr4:69212236-69212255 None:intergenic 60.0%
! GAGGGACTTGTTCCTGGAGG+GGG - Chr4:69210566-69210585 MsG0480022166.01.T01:CDS 60.0%
!! GGTATTGACACGGGGGAGGA+AGG + Chr4:69211620-69211639 None:intergenic 60.0%
CAGCTCCCCTCTGGCAACTG+AGG - Chr4:69211686-69211705 MsG0480022166.01.T01:intron 65.0%
CCACGTGTACCTCTGGTCCC+TGG - Chr4:69212238-69212257 MsG0480022166.01.T01:intron 65.0%
CCTCCCCCGTGTCAATACCG+TGG - Chr4:69211621-69211640 MsG0480022166.01.T01:intron 65.0%
GCTCCCCTCTGGCAACTGAG+GGG - Chr4:69211688-69211707 MsG0480022166.01.T01:intron 65.0%
! CCAGGGACCAGAGGTACACG+TGG + Chr4:69212241-69212260 None:intergenic 65.0%
!! CCACGGTATTGACACGGGGG+AGG + Chr4:69211624-69211643 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 69207045 69212687 69207045 ID=MsG0480022166.01;Name=MsG0480022166.01
Chr4 mRNA 69207045 69212687 69207045 ID=MsG0480022166.01.T01;Parent=MsG0480022166.01;Name=MsG0480022166.01.T01;_AED=0.27;_eAED=0.31;_QI=0|0.33|0.42|0.85|0.66|0.57|7|713|316
Chr4 exon 69212602 69212687 69212602 ID=MsG0480022166.01.T01:exon:8706;Parent=MsG0480022166.01.T01
Chr4 exon 69212075 69212219 69212075 ID=MsG0480022166.01.T01:exon:8707;Parent=MsG0480022166.01.T01
Chr4 exon 69211327 69211568 69211327 ID=MsG0480022166.01.T01:exon:8708;Parent=MsG0480022166.01.T01
Chr4 exon 69210952 69211010 69210952 ID=MsG0480022166.01.T01:exon:8709;Parent=MsG0480022166.01.T01
Chr4 exon 69210520 69210752 69210520 ID=MsG0480022166.01.T01:exon:8710;Parent=MsG0480022166.01.T01
Chr4 exon 69209052 69209250 69209052 ID=MsG0480022166.01.T01:exon:8711;Parent=MsG0480022166.01.T01
Chr4 exon 69207045 69207744 69207045 ID=MsG0480022166.01.T01:exon:8712;Parent=MsG0480022166.01.T01
Chr4 CDS 69212602 69212687 69212602 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 CDS 69212075 69212219 69212075 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 CDS 69211327 69211568 69211327 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 CDS 69210952 69211010 69210952 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 CDS 69210520 69210752 69210520 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 CDS 69209065 69209250 69209065 ID=MsG0480022166.01.T01:cds;Parent=MsG0480022166.01.T01
Chr4 three_prime_UTR 69209052 69209064 69209052 ID=MsG0480022166.01.T01:three_prime_utr;Parent=MsG0480022166.01.T01
Chr4 three_prime_UTR 69207045 69207744 69207045 ID=MsG0480022166.01.T01:three_prime_utr;Parent=MsG0480022166.01.T01
Gene Sequence

>MsG0480022166.01.T01

ATGACGGCGTCACAATTGCACGACCCATATAGCTTTCCGATGCAATTGAGAATGCTGGTCCATGCTAATTCAAGAGGTCGACCATGCTGTAGCCTCGATTTCTGCTGGAATGACGAGTATGTTGGTAATTTGATTGCTGAAGCTATAGAGAAGATTGGATTTGATGGGGTAATCACCATCGAGTCATCCTCATCATCTGAACCCTCTGTGGTAATTGAAGAAGGGATGAAGATTGACAGGGGTTACATGTCTCCTTACTTCATCACCAACCAGGAAAAATCCATTGTGGAGTTTGACAATGCTAAAGTTTTGGTAACGGATCAGAAGATTTCAAGCGTCAAAGAAATAGTTCCTTTGCTGGAAAAAGCTATGCAGTTGAGTGCTCCGCTCTTAATTATTGCGGAGGACGTCACTGCACAAGTGTTGGAAACATTAATAGTGAACAAAATGCAAGATTACTACGAGTTGCAGCTTTGCCAAGATTACAATCCCCTAGCGGTTGTTTCAGTACGTCAGTTGACTGTTAATAGAGGTGCGGATTTTCTCTGTGGAGATTTGGGTCTTACACTTGAAGGTACAACATCAGACCAGCTTGGTACTGCAATGAAAGTGAAAATAACCAGTAATGCAACAACTATATTTGCTGATCCAAACACTAAGGCTGAAATTCAGGCTAGAATTTTACAGATAAAGAAGGATCTTATTGAAACAGACAATGCAAACCATTCGAGAAAGCTCTCAGAGAGAATTGCGAAACTCACTGGGGTAGGTGCACACACTGAGCTAGAACTTGAGGATAGAAAGCTGAGGATTGAGGATGCTAAGAATGCTACTTTTGCTGCCATAAATGAGGGACTTGTTCCTGGAGGGGGTGCCACATATGTCCACCTTTTGGACTTGATACCTGCCATAAAGAACTCCATGGAAGATCTGAGAGCAAATTGGTGCTGA

Protein sequence

>MsG0480022166.01.T01

MTASQLHDPYSFPMQLRMLVHANSRGRPCCSLDFCWNDEYVGNLIAEAIEKIGFDGVITIESSSSSEPSVVIEEGMKIDRGYMSPYFITNQEKSIVEFDNAKVLVTDQKISSVKEIVPLLEKAMQLSAPLLIIAEDVTAQVLETLIVNKMQDYYELQLCQDYNPLAVVSVRQLTVNRGADFLCGDLGLTLEGTTSDQLGTAMKVKITSNATTIFADPNTKAEIQARILQIKKDLIETDNANHSRKLSERIAKLTGVGAHTELELEDRKLRIEDAKNATFAAINEGLVPGGGATYVHLLDLIPAIKNSMEDLRANWC*